CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP013352	Clostridium butyricum strain JKY6D1 chromosome 1, complete sequence	4 crisprs	cas3,csa3,DEDDh,DinG,RT,WYL	0	9
NZ_CP013353	Clostridium butyricum strain JKY6D1 chromosome 2, complete sequence	3 crisprs	DEDDh,RT,csa3,cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6	60	1
NZ_CP013354	Clostridium butyricum strain JKY6D1 plasmid, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013352_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013352_1

1801058-1801141

Orphan

Consensus_repeat	Method
TGGTATTATCTAAATGAAGATGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013352_1

>merge|NZ_CP013352|1|1801058-1801141|CRISPRCasFinder
TGGTATTATCTAAATGAAGATGGAATAATGCAAAGAGGATGGGTTTATAGTAATAATTCATGGTATTATCTAAATGAATATGGA

>NZ_CP013352|1|1|1801058-1801141|CRISPRCasFinder
TGGTATTATCTAAATGAAGATGGA	ATAATGCAAAGAGGATGGGTTTATAGTAATAATTCA
TGGTATTATCTAAATGAATATGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013352.1\|WP_046057737.1\|1793311_1795348_+\|penicillin-binding-transpeptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223839
NZ_CP013352.1\|WP_058141937.1\|1801646_1803044_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|341130
NZ_CP013352.1\|WP_058141934.1\|1795667_1798895_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP013352.1\|WP_024040156.1\|1785699_1786284_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|225023
NZ_CP013352.1\|WP_002580016.1\|1787924_1789373_+\|TrkH-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223246
NZ_CP013352.1\|WP_058141644.1\|1812165_1813545_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|290319
NZ_CP013352.1\|WP_002580027.1\|1803973_1804471_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224248
NZ_CP013352.1\|WP_003411879.1\|1810608_1812141_+\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP013352.1\|WP_035761877.1\|1804608_1805535_+\|LD-carboxypeptidase	unknown	unknown	gnl\|CDD\|132882
NZ_CP013352.1\|WP_002580029.1\|1805579_1806500_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP013352.1\|WP_058141940.1\|1809401_1810463_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235440
NZ_CP013352.1\|WP_058141939.1\|1806660_1807272_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224882
NZ_CP013352.1\|WP_002580018.1\|1790429_1791326_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP013352.1\|WP_058141935.1\|1798964_1800335_-\|iron-hydrogenase	unknown	unknown	gnl\|CDD\|274983
NZ_CP013352.1\|WP_058141932.1\|1789544_1790261_+\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP013352.1\|WP_058141938.1\|1803107_1803710_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|197609
NZ_CP013352.1\|WP_058141933.1\|1791415_1792732_+\|polynucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|237339
NZ_CP013352.1\|WP_002580015.1\|1786555_1787935_+\|Trk-system-potassium-transporter-TrkA	unknown	unknown	gnl\|CDD\|236541
NZ_CP013352.1\|WP_003427727.1\|1792887_1793151_+\|late-competence-development-ComFB-family-protein	unknown	unknown	gnl\|CDD\|378482
NZ_CP013352.1\|WP_002580031.1\|1807648_1809316_+\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|235154

Protein	Function_ID	Function_description	E-value
NZ_CP013352.1\|WP_046057737.1\|1793311_1795348_+\|penicillin-binding-transpeptidase-domain-containing-protein	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	9.61978e-114
NZ_CP013352.1\|WP_058141937.1\|1801646_1803044_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	4.27688e-25
NZ_CP013352.1\|WP_058141934.1\|1795667_1798895_+\|sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.14153e-50
NZ_CP013352.1\|WP_024040156.1\|1785699_1786284_-\|serine/threonine-protein-kinase	gnl\|CDD\|225023	COG2112, COG2112, Predicted Ser/Thr protein kinase [Signal transduction mechanisms].	7.52172e-06
NZ_CP013352.1\|WP_002580016.1\|1787924_1789373_+\|TrkH-family-potassium-uptake-protein	gnl\|CDD\|223246	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	1.48912e-114
NZ_CP013352.1\|WP_058141644.1\|1812165_1813545_-\|IS5-family-transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	1.58099e-22
NZ_CP013352.1\|WP_002580027.1\|1803973_1804471_+\|hypothetical-protein	gnl\|CDD\|224248	COG1329, COG1329, Transcriptional regulators, similar to M. xanthus CarD [Transcription].	4.54629e-28
NZ_CP013352.1\|WP_003411879.1\|1810608_1812141_+\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	1.73004e-19
NZ_CP013352.1\|WP_035761877.1\|1804608_1805535_+\|LD-carboxypeptidase	gnl\|CDD\|132882	cd07025, Peptidase_S66, LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment of preformed D-Ala-D-Ala dipeptides. Some enzymes possessing LD-carboxypeptidase activity also act as LD-transpeptidase by replacing the terminal D-Ala with another D-amino acid. MccF contributes to self-immunity towards microcin C7 (MccC7), a ribosomally encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. Its possible biological role is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	1.37135e-119
NZ_CP013352.1\|WP_002580029.1\|1805579_1806500_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.36116e-15
NZ_CP013352.1\|WP_058141940.1\|1809401_1810463_+\|histidinol-phosphate-transaminase	gnl\|CDD\|235440	PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional.	0
NZ_CP013352.1\|WP_058141939.1\|1806660_1807272_-\|hypothetical-protein	gnl\|CDD\|224882	COG1971, COG1971, Predicted membrane protein [Function unknown].	1.90478e-09
NZ_CP013352.1\|WP_002580018.1\|1790429_1791326_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	7.6785e-65
NZ_CP013352.1\|WP_058141935.1\|1798964_1800335_-\|iron-hydrogenase	gnl\|CDD\|274983	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3. See for descriptions of different groups.	3.17198e-111
NZ_CP013352.1\|WP_058141932.1\|1789544_1790261_+\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	2.05143e-93
NZ_CP013352.1\|WP_058141938.1\|1803107_1803710_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|197609	smart00257, LysM, Lysin motif.	9.78045e-05
NZ_CP013352.1\|WP_058141933.1\|1791415_1792732_+\|polynucleotide-adenylyltransferase	gnl\|CDD\|237339	PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional.	1.18573e-93
NZ_CP013352.1\|WP_002580015.1\|1786555_1787935_+\|Trk-system-potassium-transporter-TrkA	gnl\|CDD\|236541	PRK09496, trkA, Trk system potassium transporter TrkA.	4.2245e-171
NZ_CP013352.1\|WP_003427727.1\|1792887_1793151_+\|late-competence-development-ComFB-family-protein	gnl\|CDD\|378482	pfam10719, ComFB, Late competence development protein ComFB. This family is conserved in bacteria. Some members, with three conserved cysteines, are annotated as late competence development protein ComFB.	2.66768e-22
NZ_CP013352.1\|WP_002580031.1\|1807648_1809316_+\|2-isopropylmalate-synthase	gnl\|CDD\|235154	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated.	0

>NZ_CP013352.1|WP_058141935.1|1798964_1800335_-|iron-hydrogenase
MNSKYTDLFHELIQAYYDGNFDETLSRIMVCHESSPQETFKIITSLCGVNIEFDNNYIYNLKKAITMYSVNKRIVEKLECSGVNCIKSKDDKFTCEAACPFNAIKYDTTNKTTYISKDICINCGICVDSCKGGRILDKVEFIPVMNLIKENKTVIAAVAPAINGQFGDNVTMDMLREAFIKIGFSDMIEVAFAADILSIKEACEFDKHVNKDGDLMITSCCCPMWVGMLKKVYTSLVKDLSPSISPMIAAGRIIKKINSDAKVVFIGPCIAKKAEAKENDLKDVIDFVLTFAELDEIFKALKIDLSSLKGIPSKDYTSRGGRMYARSGGVSNAVSDIIEELYPDKFKSFKSSTASGVKECKEILEKALNKELDSNFIEGMGCKGGCVGGPKTLIPLEKGKQQVDNFAFDSPIKVPLHSETLDNILKEIGINSIDDFKDKQKMSLFERDFNSNNVKK
>NZ_CP013352.1|WP_058141934.1|1795667_1798895_+|sensor-histidine-kinase
MIIINKLKNTILKISVIFFILNLFTSISVVKAEAYSNIVFKNITIEDGLAQATVECMIQDSRGYMWFGTNDGLSRYNGHEFEVYRNEIGVDNSIVNNYIVCMNEDRDGNLWIGTIDGASKINLSTNEITNYKNSSGLSNNNITEILVTKDGEILLATIDGLNIYDKTNDRFTRIFNNEYIKDQEIYSLDEDINGDIWLGGSKNITKINLKNNTCEDFSDINKEYEKINDCAYKVLCDDKYIWVGTISNGLYKINIETSQTETINLSNSKISSNNIHTIMKDKNGIMWIGTDSGLVKYDSKNDEYNTYVNKAYDKYSLVDDYVYSVIQDRSGLIWVGTYAGVSMFEPENKIEHYKVDPLSHSSINENLIHGIYEDDDGLIWIGTNTKGVNVLDRKNENIYDISEFTNGTALSSNSINDISGHANKIFIATNNGLNIYDKNTRKISVYNEKQGLNAKKIRNITYDDSGVLWIGTTNGINILNLETDEITDLNYILDKYSLDDRYSECIFKDSEGFYWLGSFLNGGLIKIDPYNNTAIQYKHEGKDGDLSNNTVRTIIEDDEKNIWVGTSGGLNKLDKETGKFKTYTTSDGLANNNIYGIVIDETGNLWMSTNLGISKLDREKDRFFNLNITDGLQSNEFNGHSYGKLKSGELIFGGINGLNIFNPDEILNNMYIPRVEFDRFRVNGRTIDTLQDAKLNYNENTIGIKFFLPDYKNIKNIQYYYSLEGAGNDWSLVNTNELVLSNLGSGTYIFRVKARNSSGIFSEESSFKFTIKPPFWRSAEFILIYILIGVSLVVLIVKSKNTKMRLLDDMVSKRTRELSDEMEKNTELLNKIINLEKRKNAYLVNISHDLRTPLNVLSSIHQLINQLNKSESGIEREKLDYYMNIFGKNVDRLLKLINDLIDSSKIEHGNYHINIGKHNIVYIVEDTALSLKDYVESKNIELIIDPELEECFIECDSNEIERCIINLVNNAAKFTDEGGRILVSVVELENEVKIMVSDTGIGIDEKHLETVFDRFNQVIDSNKETKGGSGLGLTITKLIVGLHNGRIFAESEINVGSKFTIILPKKQPKEKVEKI
>NZ_CP013352.1|WP_046057737.1|1793311_1795348_+|penicillin-binding-transpeptidase-domain-containing-protein
MEKKKNLYMLVGVLIVVVPLVICTIIYMGYSYTHKPENKWQEYTELLQNKEYDKMYDLIDSTAQAKISREDFVARNKNIYEGIEAKDINITIKSISKEDNDTLINYNTKMDTIAGELEFDNSVKIASELGKGHTIKWTSKNIFPDLGENDKVRVKTLKGRRGNITDRNGQLIATDSYLSNVGVVPGKLGDNKEESIAKIANILKCSTETINKALSANYITDDMFVPIKDIPYGDAKVVDLLKVPGVMIKEKDSRVYPLGRDTAHITGYVQSINGDELEQNKDKDYTENSLIGKAGLEKMYEDFLRGIDGAEIYIQNSEGEKKSVVLSKDARNGEDLKLTIDINVQKKVNEELGSDKGCAVVMNPENGEVLALSSTPSYDPNDFILGMSQEKWNTLNNNEDKPLFNRFQATSVPGSALKPIIAAIGVDSGSVKPDQVRKISGLAWQKDESFGNYYVTRTSNIEEVNLENALVYSDNIYFAQIAMDMGSNLIEEKLKSFGFGEKIPFEFALYNSQYSNDGKIKEGAQLADTGYGQGEVMVNPVHLTSMYSMFLNQGNIIEPHLVIDNKNNNIIWKKSVVSKESAQIVLNDLIQIVENPAGTGHEAYNSKLKIAGKTGTAEIKNSQTDTSGTELGWFVGMTTEGDNKVLVTMMIEDVKGRGGSHYVVPKVKDVIESVSLKQ
>NZ_CP013352.1|WP_003427727.1|1792887_1793151_+|late-competence-development-ComFB-family-protein
MKKITNCMEISVKECLDKLIEESNGCKCEKCRYDMMAIALNNLKPYYVTTHLGEVITKIKNMEQQSEANIVVEVTKAIKKVHMSPKH
>NZ_CP013352.1|WP_058141933.1|1791415_1792732_+|polynucleotide-adenylyltransferase
MNYKLKIPSDVQYIINVLIENGYEGYMVGGCVRDLLINREPNDYDITTNAKPEIVARLFDKVILTGLKHGTVTVIINKVQYEVTTYREDGEYKDSRHPENVKFVTDIKNDLSRRDFTINAMAYNKEKGLIDYFDGLSDLKNKVIRTVGNPEKRFTEDSLRMLRAVRFAVQLDFKIEESIIQSIKILNNNLEFISKERIREEFNKIILKDPNGLKLLHECSILKYIADDLDKAYDYYINDKTKCYNLYEHLILSSCNIKKDLSLRLTMLFHDLGKLKNWNNKLEKVDNIFIESACIAEKILRSLKYDNGTIKKVKTLITYMHSDLEDKVSIKKLLNIIDVELFEDLIKVKKAHIMSENIEEVKFLNIEKLYCDILEKNECFRIRDMKINGEDIIKIGVKKGKDVGTMLNYLLCKVIEDNNLNYKKKLLELAEDKLSMNI
>NZ_CP013352.1|WP_002580018.1|1790429_1791326_+|MurR/RpiR-family-transcriptional-regulator
MEELNNENSKDLMRLIQGKFIRLSKGQKLIAEYILKNYDKAAFMTAAKLGNAVGVSESTVVRFAIEVGFSGYPKLQKALQELIKNKLTTVQRLELRNDYFSDGDALKGVLKADMENIRATLEKINQNTFQDVVQHIFEAKRIYIIGLRSSTALAEFLGFYLNIILQNVKVVSYGISDVFEQMINVGEGDLVIGIGFPRYAAKTIDALEFSQDRGAKVVALTDSLLSPLATKADYTLIAQSNMASFVDSLVAPLSVINALIIAVGMREKENISNVFSNLELIWKNYNVYSINNKNVADD
>NZ_CP013352.1|WP_058141932.1|1789544_1790261_+|rRNA-pseudouridine-synthase
MEERLQKYMASCGIAARRKCEELILLGKVKVNGNIIEELGFKVNPLEDIVEYDGRVITKEERKVYIMLNKPEDVITSVKDEKDRKTVIDIVKVNERIFPIGRLDYDSSGLILLTNDGELYNKIIHPRVELDKKYVAVVKGEVSLDDKEKFESGIDIGGYITAPAKLKMLEYSHRKDLSTIEVCIHEGKNRQIRKMCSAINHEVMSLKRVSIGNIRLGQLKKGEYRYLNDEEMKYLMSL
>NZ_CP013352.1|WP_002580016.1|1787924_1789373_+|TrkH-family-potassium-uptake-protein
MNYKAVLSILGNVVKYMVALLFVPLLIALYYGEGDAKSFLLTILIGAPIGFILSNIKAEKKAIYAKEGFLIVGFAWIIISAIGALPFVISGAIPSFIDAFFETVSGFTTTGATILTAIEGLPKGILFWRSFTHWIGGMGFLIFMLALIPSLGSNSIHLLKAESPGPSPGKIVPKIKETAKILYLIYFALTLIEGILLMCAGMNLYDAVIHAMGTAGTGGFSNMNASIAAFNSPAIEWIITIFMLIFGINFALYFQILKGNFKGFFKNEELRYYLLIILSAFILITVNIISLNGGDIILSVRQSAFQVSSIVTSTGFATVDFNFWPTLSKLIIVMLMFVGAMAGSTGGGIKTVRIVIMLKAIKREINKIIHPKRVNSVKIDGKTVDEDIIHGVFLFIGAYIIISLIAIFIISFDNFDVVTTVTSVITTMSNIGPGLEVVGPAGNFAAFSPLSKLVLSFCMLAGRLEIYPMLIMFSPSIWRKNH
>NZ_CP013352.1|WP_002580015.1|1786555_1787935_+|Trk-system-potassium-transporter-TrkA
MMNIIIVGAGKVGYAIAKNLSTGNDNVTIIDNKMTALERINNNLDVMCVKGNCTSLKVLNEAGIEEADLLISVTNSDELNMLCSLAGKKLGAKHTVARVRNPGYDEDITLLTEAVGIDLVINPEKAAAGEISKLIKYPSVCSIDNFANGRVNMVGFDITEDTGLENKKISELGYLRGNVLFCGIERNGEMIVPKGDYIFEKDDHVYVIGEHKDIQEIFKKFGKYRRKVRSSMIIGGGRIGYYLTKIVSEAGVHCKLIENDFNKCEELAELIPNSVIINGDGLDQELLLSESLEEADSFITLTGRDEDNLIASLFAAKNGVKNIITKVTRDNYNEIAKTIGINSTINPKSVTANKIIKYVRTLKNRKKCPIENVYKICNEKAEAIEFIVKENAQYINIKIKNLNFKYDSLIATIVRENKTIIPSGDDILKPGDRVVVVTKDTNLLSLSGIFVGGGKNNEL
>NZ_CP013352.1|WP_024040156.1|1785699_1786284_-|serine/threonine-protein-kinase
MRYILDIKECEFLGKGHEGSVYLTPEGYALKIFLKKKKAKEEVSILELVKTSKFFPKVIFIAGNMILREYVDGVTLFEHLKKNGISYKLSCEIIDLIEDFKKMKFKRLNIRNAHIFVDKNENIKVIDPRKIFTKNTPYPKDIIKILVNLNIFDDFLKNVAQYRSDLLQYYVDAYNYYVYMSKKSMHIDMHAEIC
>NZ_CP013352.1|WP_058141937.1|1801646_1803044_+|L,D-transpeptidase-family-protein
MKEFMYEKSTKISCILLIVLFLIYFLGAFYFKTHFFFKTSVNGIDISFKTVDEAKDIVYNELSDFKVVLKDDSNEDKIESKDINLEYNGDKKIEEIKEKQSFFKWASALIDNKQYENLDIFTYDESMLEEKVKDLNFFKNLDVIEPKNPQFQYTDGKYIVLEEVKGNKLNYEKTIKAIKSAIEHGNKVVDLNTTGCYERPKYTRDSEKVKEVKDIIDKYVYSKIVYSFDELMETVDGSIINKWIDIDDDMNPSINEKKVKEYIDSLCEKYNTVGKERKFDSSIGKTVIVKGGYYGWKINSNEEVKALIENIKHGQSVFKEPIYSQKGLSRSDDDIGDTYVEVNITRQHLWFYKNGKLLTQGDIVTGCQSKNTPTAEGVYGLNYKQKDATLKGDGYSSKVSYWMPFNGNIGLHDARWRSSFGGNIYKTNGTHGCVNMPQYLAKIIFENIESNTPIICYSEDTKNNN
>NZ_CP013352.1|WP_058141938.1|1803107_1803710_-|LysM-peptidoglycan-binding-domain-containing-protein
MKKYYYLFLFTALISILLLSCQFIPSLKSNKSISPNNSSFDIHSNDANQNSDSTNNYENSNNNSDDFVIPCSNAVHITIREFINNQQCSSYLVKENETLNDILMRYNSTCAPNASLKLIKELNNITSTNDVKAGTTLKIPETTMKNGSLYTISQGDTWSKICEKYYPVYDIDSIMKLLIFINDYKNDILPLGDTIFLPKI
>NZ_CP013352.1|WP_002580027.1|1803973_1804471_+|hypothetical-protein
MFEFNIGDKVVYPNQGVGVIDLIEEKEFKGKKEKYYKIHLINNTMKLSLPLSRVKSANMRHISDSKTLDSKLNNIKYYVKEVDKLAKTNYKERNEIYSTKVKSGTLEDLLEIISNLTELKTIHDLNSMEKTILRNTKRILIDEIAQSKKISLDEAGYLLDIFMNS
>NZ_CP013352.1|WP_035761877.1|1804608_1805535_+|LD-carboxypeptidase
MIRPKPLKKGDTIGIIGTCSPPKKERIDPAIKWIKSLGLEVVIGRSVNENHGYLCGEDKVRADDLNYMFHNKDIKGIFIVRGGYGAARILNMIDYDNIKKNPKILAGYSDVTALHIAINQKCKMITFHTPMPCTEFYTDIDDYTVESFKDSIFKINYTKKVVNPDKCKSFEGLVKGNACGRITGGNLSIIASLMGTPYEINTKNKILFLEDIDESPYKIDRMLTQLRLANKFKDAAGIILGSWTGCDAKDTSRSLSLNEVFNEIIIPEKRPTIMNIACGHTLPTMSIPLGSNISINADSLEILNIDKD
>NZ_CP013352.1|WP_002580029.1|1805579_1806500_-|DMT-family-transporter
MNNYKGIIYAILSSIAFGIMPIFAKIAYKNGSNPTSSLLFRFLISGLILLLYLNFKKVSIKISVKQFLLLFFIGMFGYTITTITLFVSYNYLDSGLATALHYIYPALVCIFSFILYKENITKEKIFSLVLSIIGVYSLIAFESKTLNILGILLALFSGLAYALNVISLSFKSIKSIDNRVVTMYICFGASLGMIIYGAFTESLTFTINLEMMISYLGLSIISTIASMLFLLKAIKLIGSTSASILATFEAVVSIIMGIIFLNEKLTFALILGTSLIIISTTILAREKSPKPCDQYNKLSNAIDINH
>NZ_CP013352.1|WP_058141939.1|1806660_1807272_-|hypothetical-protein
MNFLSALLLSTAINIDTLKISFSSKNDSSVPLNLKILFASIFTTFITFLAFCFGKIIDIYFTHSLSNIFGSVHLGFVGVYYLIEHIRIQKDNDGYDTSFYVNNFKKHKNLIELNNPYIYSDSFKNLFNISIALSLNNILPSIAGSLTNINLPLTILFNFLICIFFYIAGNFIYNKKFIKYIKTNHYLITSILLIILSVFESFH
>NZ_CP013352.1|WP_002580031.1|1807648_1809316_+|2-isopropylmalate-synthase
MLNYKKYKRFETIKLKDRTWPDNEITKAPIWCSVDLRDGNQALINPMTVEEKIEFFNLLVKLGFKEIEIGFPSASQIEYDFLRRLVDENLIPDDVMVQVLTQARPHLIKRTFESLRNVKKAIVHIYNSTSVLQRDVVFNMSKEEIKEIAVEGTKLVKEYAKDFEGEILLEYSPESFTGTEVDYALDVCEAVMDTWEASKDNKVIINLPATVEMDTPNVFADQIEWMCRNFKDRERVILSVHPHNDRGTGVADSELALLAGADRIEGTLFGNGERTGNVDVLNIAYNMFSHGVNPQLDIENINEIIEVYERCVKIPVHVRHPYAGNLVFTAFSGSHQDAINKGMKKYNERHGNIWEVPYLPIDPSDLGREYEALVRINSQSGKGGVAFVMDHCYGFKLPKTMQKEFADIIQKMSEVKGEISPSEVMDAFTKEYLDLDVPFKLLKCTFTDISEMDGSEDTKADVIVVYNGEQRVLEGIGNGPIDSFKKALAESSLINVKIIDYTEHAMSTGSEAKAASYVYMERLDNKKKTFGVGTDSNITRASIKSMMSAINRLYK
>NZ_CP013352.1|WP_058141940.1|1809401_1810463_+|histidinol-phosphate-transaminase
MIIYWNDHVKTLEPYVPGEQPKDKKYIKLNTNENPYGPSPKVIDAIKNAVCDDLKLYPDPTCSNLSMEIAKYYHINDDEIFIGNGSDEILAFVFMTFFQKDRKVLFPDISYTFYNVYAEMFNVNYEHIKLDDKFNIPLEGFYKDNGGIIFPNPNAPTGKYIETNKIIEVLEKNKNSVVIVDEAYIDFGGKSMVEYIETYPNLLVIQTFSKSRSLAGLRVGFAIGNSQLIEGLNRVKNSFNSYTIDRLALIGAAEAIKDKNYFDVTTKKIIRTREDTVKKLENLNFEILDSKANFIFVKHKEFSGKYLYEKLKENGVLVRHFNKERIEDYLRITIGTDEEMSLLIANVKKILKY
>NZ_CP013352.1|WP_003411879.1|1810608_1812141_+|cell-wall-binding-protein
MTYKKNRLLALGIITIGLSFISTNANAEIKKTEVYEETMQNEKLLANDTSIKEKTQSDYKIKRNWLTEEVASQLNKDFKDLTTEDFEHIIKIDFRYKKIDDTIPDEIALLKNLQYLDLNYCRLYGDIPEEIANMTNLTHLDLGDNKLGKLPESLEKKIIDGDYAYCDVEGNQLRLEKGWHLLKGNWTYIDRYGERLTGVQTIDKVTYDFGEQGFIKEGWEQVDNIWHYYDRVSGMIKNDWKLINSKWYYFNADGIMVTGLQNIQGTKFCFAPSGEMLTGFQNIGGYNYSFCESGGMQYGLVNVNGKQYYFDETTGIMATNTEKVINGKKYIFAADGSGSIKSNVWIDNYTYIQANGQTVNTYYDYSHSNTNYQLFKYMTDLGNQISVDRTAVALHGGITSNNCVYFASEALRRVGVGIPTSTCNTYELENELKYMGFVPCYDLSQLKPGDIVFTNNYSHVYIFMCWDTDGYAYIVDNQSYNFDNKVLHKRQVYQDTSITDRATHFYYYPN
>NZ_CP013352.1|WP_058141644.1|1812165_1813545_-|IS5-family-transposase
MYSIDNQLKIEDFVFPFGELDKNNRWVKLADIIPWFEFEQIYSEKFINNGRPSKPFRIVLGSLIIKQKLNCSDRETVSAIAENPYLQYFIGLKEFQQSAPFGASSMVEFRKRISDEMIIEMNEIILESEASSEDIHDDDNNDNTPKNEGTILMDATCTPADITYPQDLNLLNSAREKLEGYIDCLHDSCNGKKPRTYRKTARKEFLNVSKCRKKSGKKLRKAIRKQLNYIIRDIRYIEEYLSHGKDLNQSQSKEYEVILQLYEQQRYMFDNRKHTVNDRIVSIAQPHVRPIVRGKTKSPTEFGAKVEISVVDGYVRMERLSWDAYNESESLIPIVENYKERNGVYPERILADKIYRNRNNLSYCKEHGISITGPALGRPKKNKDKFEKKQEYIDTCERNEVEGKFGTSKTKYGLNRIFAKLKETAQSVINMAFFVMNLDKKLRVILRQILSGIFWCKII

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Crispr_ID: NZ_CP013352_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013352_2

2247386-2247468

Orphan

Consensus_repeat	Method
CCTGAATTATCTGTATAATACCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013352_2

>merge|NZ_CP013352|2|2247386-2247468|CRISPRCasFinder
CCTGAATTATCTGTATAATACCAGGTTCCCTTATCATTTATCCACCCAGTCTTCATTGCTCCTGAATTATCTGCATAATACCA

>NZ_CP013352|2|2|2247386-2247468|CRISPRCasFinder
CCTGAATTATCTGTATAATACCA	GGTTCCCTTATCATTTATCCACCCAGTCTTCATTGCT
CCTGAATTATCTGCATAATACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013352.1\|WP_058371801.1\|2233853_2234114_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368227
NZ_CP013352.1\|WP_058141644.1\|2242185_2243565_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|290319
NZ_CP013352.1\|WP_057087522.1\|2257555_2258509_-\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|238572
NZ_CP013352.1\|WP_081044116.1\|2240986_2241967_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380514
NZ_CP013352.1\|WP_058371810.1\|2252326_2252815_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|377139
NZ_CP013352.1\|WP_058371814.1\|2255986_2257402_-\|sucrose-phosphorylase	unknown	unknown	gnl\|CDD\|200492
NZ_CP013352.1\|WP_058371815.1\|2258572_2260048_-\|glycoside-hydrolase-family-32-protein	unknown	unknown	gnl\|CDD\|224536
NZ_CP013352.1\|WP_058371808.1\|2247924_2248734_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NZ_CP013352.1\|WP_058371800.1\|2232058_2233636_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP013352.1\|WP_058371811.1\|2252926_2253745_-\|PTS-mannose-transporter-subunit-IID	unknown	unknown	gnl\|CDD\|182965
NZ_CP013352.1\|WP_058371812.1\|2253765_2254557_-\|PTS-mannose/fructose/sorbose-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|237895
NZ_CP013352.1\|WP_058371809.1\|2249514_2252316_-\|sigma-54-dependent-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226443
NZ_CP013352.1\|WP_058371806.1\|2239289_2240741_-\|PTS-sucrose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|131051
NZ_CP013352.1\|WP_058371804.1\|2236691_2237303_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP013352.1\|WP_058371799.1\|2231742_2232021_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013352.1\|WP_058371802.1\|2234127_2235384_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235104
NZ_CP013352.1\|WP_058371813.1\|2255343_2255757_-\|PTS-mannose-transporter-subunit-IID	unknown	unknown	gnl\|CDD\|185045
NZ_CP013352.1\|WP_058371805.1\|2237713_2239204_-\|sucrose-6-phosphate-hydrolase	unknown	unknown	gnl\|CDD\|273554
NZ_CP013352.1\|WP_057087364.1\|2254802_2255294_-\|PTS-fructose-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|185045
NZ_CP013352.1\|WP_058371803.1\|2235528_2236431_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407

Protein	Function_ID	Function_description	E-value
NZ_CP013352.1\|WP_058371801.1\|2233853_2234114_-\|hypothetical-protein	gnl\|CDD\|368227	pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1. RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp domain, which a mobile domain involved in positioning the DNA, maintenance of the transcription bubble and positioning of the nascent RNA strand.	0.00580198
NZ_CP013352.1\|WP_058141644.1\|2242185_2243565_-\|IS5-family-transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	1.58099e-22
NZ_CP013352.1\|WP_057087522.1\|2257555_2258509_-\|carbohydrate-kinase	gnl\|CDD\|238572	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.	4.7556e-110
NZ_CP013352.1\|WP_081044116.1\|2240986_2241967_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|380514	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	3.49835e-103
NZ_CP013352.1\|WP_058371810.1\|2252326_2252815_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|377139	pfam03830, PTSIIB_sorb, PTS system sorbose subfamily IIB component.	6.82501e-63
NZ_CP013352.1\|WP_058371814.1\|2255986_2257402_-\|sucrose-phosphorylase	gnl\|CDD\|200492	cd11355, AmyAc_Sucrose_phosphorylase, Alpha amylase catalytic domain found in sucrose phosphorylase (also called sucrose glucosyltransferase, disaccharide glucosyltransferase, and sucrose-phosphate alpha-D glucosyltransferase). Sucrose phosphorylase is a bacterial enzyme that catalyzes the phosphorolysis of sucrose to yield glucose-1-phosphate and fructose. These enzymes do not have the conserved calcium ion present in other alpha amylase family enzymes. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP013352.1\|WP_058371815.1\|2258572_2260048_-\|glycoside-hydrolase-family-32-protein	gnl\|CDD\|224536	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism].	2.14229e-153
NZ_CP013352.1\|WP_058371808.1\|2247924_2248734_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.40351e-74
NZ_CP013352.1\|WP_058371800.1\|2232058_2233636_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	6.19838e-15
NZ_CP013352.1\|WP_058371811.1\|2252926_2253745_-\|PTS-mannose-transporter-subunit-IID	gnl\|CDD\|182965	PRK11103, PRK11103, PTS mannose transporter subunit IID.	8.80113e-146
NZ_CP013352.1\|WP_058371812.1\|2253765_2254557_-\|PTS-mannose/fructose/sorbose-transporter-subunit-IIC	gnl\|CDD\|237895	PRK15065, PRK15065, mannose/fructose/sorbose family PTS transporter subunit IIC.	4.7934e-134
NZ_CP013352.1\|WP_058371809.1\|2249514_2252316_-\|sigma-54-dependent-transcriptional-regulator	gnl\|CDD\|226443	COG3933, COG3933, Transcriptional antiterminator [Transcription].	1.86705e-101
NZ_CP013352.1\|WP_058371806.1\|2239289_2240741_-\|PTS-sucrose-transporter-subunit-IIBC	gnl\|CDD\|131051	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component. This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).	0
NZ_CP013352.1\|WP_058371804.1\|2236691_2237303_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	1.9701e-09
NZ_CP013352.1\|WP_058371802.1\|2234127_2235384_-\|DNA-polymerase-IV	gnl\|CDD\|235104	PRK03103, PRK03103, DNA polymerase IV; Reviewed.	1.52032e-106
NZ_CP013352.1\|WP_058371813.1\|2255343_2255757_-\|PTS-mannose-transporter-subunit-IID	gnl\|CDD\|185045	PRK15088, PRK15088, PTS system mannose-specific transporter subunits IIAB; Provisional.	1.67377e-46
NZ_CP013352.1\|WP_058371805.1\|2237713_2239204_-\|sucrose-6-phosphate-hydrolase	gnl\|CDD\|273554	TIGR01322, Sucrose-6-phosphate_hydrolase, sucrose-6-phosphate hydrolase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP013352.1\|WP_057087364.1\|2254802_2255294_-\|PTS-fructose-transporter-subunit-IIB	gnl\|CDD\|185045	PRK15088, PRK15088, PTS system mannose-specific transporter subunits IIAB; Provisional.	1.16939e-86
NZ_CP013352.1\|WP_058371803.1\|2235528_2236431_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	5.29777e-36

>NZ_CP013352.1|WP_058141644.1|2242185_2243565_-|IS5-family-transposase
MYSIDNQLKIEDFVFPFGELDKNNRWVKLADIIPWFEFEQIYSEKFINNGRPSKPFRIVLGSLIIKQKLNCSDRETVSAIAENPYLQYFIGLKEFQQSAPFGASSMVEFRKRISDEMIIEMNEIILESEASSEDIHDDDNNDNTPKNEGTILMDATCTPADITYPQDLNLLNSAREKLEGYIDCLHDSCNGKKPRTYRKTARKEFLNVSKCRKKSGKKLRKAIRKQLNYIIRDIRYIEEYLSHGKDLNQSQSKEYEVILQLYEQQRYMFDNRKHTVNDRIVSIAQPHVRPIVRGKTKSPTEFGAKVEISVVDGYVRMERLSWDAYNESESLIPIVENYKERNGVYPERILADKIYRNRNNLSYCKEHGISITGPALGRPKKNKDKFEKKQEYIDTCERNEVEGKFGTSKTKYGLNRIFAKLKETAQSVINMAFFVMNLDKKLRVILRQILSGIFWCKII
>NZ_CP013352.1|WP_081044116.1|2240986_2241967_-|LacI-family-transcriptional-regulator
MATIKDVAREAGVAVGTVSKVINNIYVKPQTKVLVEEAIKKLNYEPNIYARGFKTNRTNTVAVILPTIWNPFFSELAYHIEKSLRKIGMKMIICNSEENKDSEIEYISMAKQNKMDGIIAITYSNIDEYVSDNIAFVSIDRYFSKNITYVSSDNFNGGMLAAEKLVEFGCKNLAYIGRGSKINNATRKRKDGFIKYCEENNISYEICELLSSVKDFNNLLDEFIKNKFKDNIEIDGVFAVTDEYALDFIKRLNKFNIKVPRDIQVIGFDGSRASAKDEVVISTIRQPVELIAQESVKALMNIIENKHLEKEIILPVNFIEGNTTKK
>NZ_CP013352.1|WP_058371806.1|2239289_2240741_-|PTS-sucrose-transporter-subunit-IIBC
MSDKKDFKKTAKSILEYIGGKENVISAAHCATRLRLVLQDDKKINLKKIEELELVKGNFNNGGQFQIILGTGIVDQVYKEFSELTCISEVSKEELKKAATVKLNIFQRFLKALADVFVPILPALVAAGLLMGINNILTAKGLFISNMSLVEVYPQFTDLAEMINLFSNAAFTFLPILIGFSATKIFGGTPVLGAVIGAIMIHPDLLNGYGYGQAILDGKVPYWSILGINIAKVGYQGTVLPVIVSSFVLAKLECKLRKTVTPILDNIVTPLISVLVTAALTFTVIGPIMRTVGDWMTSGVMWLFFDLGPIGGAIYGVVYPLLVITGMHHSLVTAETQILSNISTLGGSPTFAVVAASNVAQGAAALAVFIIMRKNAKMKSIASASGISALLGITEPAVFGVNLKLKYPFIGALIGSAIGSAYATCMNVLALSQGPAGLPGIIVIRPQSMIQYMISLAIAFSVTFIVTLLLGKASNRKKGDVIH
>NZ_CP013352.1|WP_058371805.1|2237713_2239204_-|sucrose-6-phosphate-hydrolase
MNEWTREERYRTIIDVSDEEIRALKTIVDKCPFRQKFHIQPSTGLLNDPNGFSYYNGEYHLFYQWFPLGPVHGMKHWYHVSSKDLITWKDCGVGIIPTEYFESHGAFSGSGIVEHEKLYLFYTGNTRNENWIRHSYQCMAVMDITGEIRKNKKAVIEELPEGYSDNFRDPKVFKENDKYYCLIGAERIEGNLGTIVYYESDDLYNWSFKGEINNDFIGNGFMWECPDYLKYNDKAVLIFSPQGLEAQGDKYLNIFQSGYLIGNKINFENGEFIHSEFNELDRGFDFYAPQTVQDNNGRKILIGWMGLPEIKYPTDENGWAHCLTLPRELKLKDDKLIQSPVKELELLRDKEQRKSFVLNNEEININGFCEKTYEVICNFKNFNGKYIGMKLRKGIDEETAFYYDIENEKLVLDRSRSGVSFATEYGCERKCSYKGKELKLQIFVDVSSIEIFVNDGEEVFTSRVFTKETSNGISIFSDKSVQVDVNLWTIKNNRDK
>NZ_CP013352.1|WP_058371804.1|2236691_2237303_+|sigma-70-family-RNA-polymerase-sigma-factor
MNYDYIENLVKQCKDGDESSKEKLIEEFRPFIINLSKRTFIPGYDYDDFKNECYRILFRCILLYKIESHRFVAYATNGIKNSINDLIRRNIQTNNIHGSGAAVFDNFVEETYKADVPEITDILCSQYDNDCLKYALNKLTEDEIDLIHHLFYENKTLKSYTDEKGMCYSYAVKKKRYILDKLFMYVNIYLNPRCTNGSYTENP
>NZ_CP013352.1|WP_058371803.1|2235528_2236431_-|N-acetylmuramoyl-L-alanine-amidase
MSNFVIAAGHTASGNIGCGVVAYLDESKCTREISQLVGKELERKGHKVNVLIIDKSNSYNCEDCFVRTKMANELNEKEKVDLYVEIHINAGGGTGTEVLITNMVDSPIAEKYAERISASVSGALGIRNRGVKKQSLIVLNKTSMPAILIECLFADSSDSNKYNAEVIAGAIVDGLTGVDSRHNKQWKLGWNRNSIGCWYSPDNINKTYYTSQNGWKCIDGEWYIFDEQGYALENSWYYDESDCCWYYLDENCRMIYASDNNPLWKWINGGCYAFDEEGRMYTNCVTSDGWRVDESGMWIE
>NZ_CP013352.1|WP_058371802.1|2234127_2235384_-|DNA-polymerase-IV
MIYDNDRIVFHVDVNSAYLSWTAVKLLQYGSSIDIREIPSVIGGDIENRHGIILAASISAKELGIKTGEPIFSAMQKCRDLKVYPPDYDWYVKSSNAMVQLLEEYSPKIQRYSIDECFMDCTHFKDNYKKMAVKVKMRISDELGFNCNIGISTNKLLAKMASDFKPKNTVHTLFKEEISQKMWPLPAGDLFMVGRATKEKLSKLNINTIGDIAKADVNLLVQKMHSHGKLIYEYANGIDNSEIRECNYLDIKGIGNSITISYDVETYEEACRILLALTESATMRLRENRSLCSLVVVSVKTNNFLYYSHQKPLENSTDSTNIIYEGIKKTFRETWKGEKIRQLGVRLTKLCSNEYYQESLFDFENNEKQMKLDKTVDEIRKRFGKQAVIRSTFLHSGIKPIEGGTGSKGDYPMMSSIL
>NZ_CP013352.1|WP_058371801.1|2233853_2234114_-|hypothetical-protein
MKVVAKSIEMIAYFKSDGMINPIKFRVQEDNSYEVIKINKIISTDIEKLCGNKMMVFTCSAFINNTEKIFEIKYDVEKCKWMLFKI
>NZ_CP013352.1|WP_058371800.1|2232058_2233636_-|helix-turn-helix-domain-containing-protein
MSSGNYIRDRRKEKGLTQEDLAELAGCNVRTVRRLETEGCVKETNTIKKILEILEVRTSRIDNKGRLVLKFEADDDDNEEILNELGCNNSNEVFNALKNNLIQAYQLVEKKNYYEALEIYLAVSKLFVNEKIHLKIAILYYNMGRYEECIDASNKLINGQSYIYEGLNIKGICLSKLGKYEESLEILKEALEIKGDYIDYYNLGVTYGIKGDTYKAIKQYKKCLEINPNHARAHLNISICYFTILSINKSLYHVEEAIRLNPDMYEAYAIKGECYRFLDDLDYATDNFKLCLDKDQQNYSSIFGMCIISAVKNELIDSTRYFKELFKLYSDNFFKTDKDKSLIVDIGYKRTTVIEIEKISKYVYKVTLGDEHIEIKVDSEGSFIYIGCLPISDETGTILYPTIGKAYTDKYEYDKCIEGIERTIEVFKASQKYPLHVNFKREIEVILTELEDCVKIEIIFGCADKYKIVSYTDTKGQGFEGFIEFFNKYNQFRIQVEYLDKEEFIIDCIKNVIINRIKSENCTYY
>NZ_CP013352.1|WP_058371799.1|2231742_2232021_-|hypothetical-protein
MKQNYCNYINDFLLNMVNERMDNLENNDEYKEIERNIESLKNEVRYHLDDKIDIKLNELFELINKKQIISEEYLYKTGFHDGIVFLSNVNCR
>NZ_CP013352.1|WP_058371808.1|2247924_2248734_-|Cof-type-HAD-IIB-family-hydrolase
MKNFKMLCLDIDGTLLNSKHEITEVTMKLIKKVVDEKQVKVILVSARMPCGIDYLQRQLQIEAPIICYSGSLVLDKKYNVISNNYIGLNLVLEMIEEAKKENMHISLYKDNEWIIENRDNWARIESEITGINPKVLNFKEIECTEKYKLGFNKVLIIENEEKIKKISDILTKKLGDKLNIYQSKPTYLEIMNKSVSKTSAIQQLMNLYNIEKDEVVSVGDNFNDIDMIKFAGIGVAMGNAPDEVKKNSDYVTLSNDEDGVANVIKKYFI
>NZ_CP013352.1|WP_058371809.1|2249514_2252316_-|sigma-54-dependent-transcriptional-regulator
MKRVDRVYEYILEKSKEYTKEDLLKIKGISAAEIEKNTGILRSNVSRELNTLCRCKKAVKIRNYPILYFERNYFQKILDIELPCELEEIENIDDFIKCDEREEDNSPFRNLIGYESSLKNQIDQAKAALMYPPNGLHTLIIGSTGVGKSLFANIMYQYYKKIKNRSCDVPFIVFNCADYYNNAQLLLSYIFGYVKGAFTGADKDKEGIIEKADGGILFLDEIHRLPPEGQEMIFYFMDTGTYNKLGESGRGRKANVLLIGATTENPKSTLLNTFIRRIPITITIPDFQDRPLKEKIQLINYLISKEAQRVNKSITIDSDVIKALIGSASYGNVGQLKSNIQLMCAKGFLDSIKYDGMINIAFKSLTNEIREGILNFKEETKGADIIANSITINPDGRKIFLEAETDESNFNIYKVIENKLGELLQKGENTEKINENLIKDIDNYLHKYYKRFKFQNHKRDGILKIVSKEIVEFTEKIKIMIEQRMNTTLNDRFVYSLSLHLSSLFTRIKNNEFNNLETDFAISTDSDEYILAKEIYVQIKNNFNVIIPNVEIKYLALLIHSLKNSSQNEKVGIVVVAHGDSTATSMVNFAKKLFSIDNIIGVDMPFESTLPEILDYTMQKVIEADEGKGVLMLVDMGSLNGLGERISNNLNINVKSISMVSTPIVLEAVRKVSLSNNDLDLIYKNLIHDFEEYRVKYTECVDDSKEKVIVTVCSTGKGAAEKLKNIVKDYLEKLKNNIEVISIGLNDFNKKIIKLSEERNIVAVIGITEPIISRKIPFIPIEKLIDGTGEIIIKNIIDGKYQFSYASDKEYKNDDLEKVCKETINEFTTFLNSDKIYPLLCEFIKQIEKLVNKKYDNMFKLRLMIHIACAIERILLNGDLKYESDYSELNTEYIRIVKEAEEYIERAISIKLTDDEIYYIVSILESFDEETEN
>NZ_CP013352.1|WP_058371810.1|2252326_2252815_-|PTS-sugar-transporter-subunit-IIB
MEISFVRIDDRLIHGQTVCIWSKEYDCNRIIACSNEAANNPLRKNLLLSVHIPNKKVYVLSIEKALEAYTNPKYNGFKAMFLFTNPKDILTMVNNGVNIKSVNVGGMCYKTGKIQITGAISVSKEDVDAFKQLSEKGVKLEIRQLAKDNKVNLIDKLEELKL
>NZ_CP013352.1|WP_058371811.1|2252926_2253745_-|PTS-mannose-transporter-subunit-IID
MSEKKLQKKDLISMFIRSNFLLGSFNFERMQSVGFCVSMIPALKKLYKGKDLQDALKRHLEFFNTQPFIAAPIMGITAAMEEQKANGADIDESSISGVKIGLMGPLAGVGDPIFWGTLRPVLAALGAGLALSGSIAGPLLFFLGFNIIRIATLWFGINYGYEKGTKLVTESSDKLKYLTEGASVLGLLVMGALVSKWTTVNIPFVLSKYTGQDGIEVITTIQSVLDSLMPGLVPLLLTFLCMKLLKKKVNPLIIIFALFAVGILGYAFGILA
>NZ_CP013352.1|WP_058371812.1|2253765_2254557_-|PTS-mannose/fructose/sorbose-transporter-subunit-IIC
MSTLQLILLVIVAAIAGMGSVLDSAQTHRPLVACTLVGLVLGDLPTGIILGGTLEMLALGWMNVGAAMAPDAALASVISAVLVIVGKQSIGAGIAVAVPIAAAGQVLTIFVRTITVFFQHLADKYAESGNTRGIEICHFTGLSLQAIRVAIPAAIVGLLAGTDAVNAMLAAIPEVITRGLQVAGGFIVVVGYAMVINMMNSKSLMPFFFIGFLLAAFTDFNLLGFGAVGLIAAIFHIKSMVNNSAKSVSIGSNINDIDDSDLM
>NZ_CP013352.1|WP_057087364.1|2254802_2255294_-|PTS-fructose-transporter-subunit-IIB
MEISFVRIDDRLIHGQVATVWSKESGCNRIMACSDEVAADTLRKQLLLQVAPPGIKAYVVPIEKAIEAYKNPKYDSFKTLFLFTNPTDVLRMVEGGVDIKSINVGGMCYKSGKTQITGAVSVDENDIEAFKQLDKKGIELEVRQIAKDPKVKLMQKLKESNLL
>NZ_CP013352.1|WP_058371813.1|2255343_2255757_-|PTS-mannose-transporter-subunit-IID
MIGVVVGTHGMFSEEIVKSSEMIFGKQENVSSVTFKPGEGVEHLVEKYKKAIEKLDCTDGILFMVDLFGGSPFNAASMIAMNMEKAEIVTGVNLPMLLEVYGSKEFMSITELVNIAEGSGREAIKKLEKSQIDEEEL
>NZ_CP013352.1|WP_058371814.1|2255986_2257402_-|sucrose-phosphorylase
MNKIKNEIMLITYADSLGENLKDLKDIIDTYYSKAVGGVHILPFFPSSGDRGFAPMRYDVVDEAFGDMNDVKSISENKYLMYDFMVNHISRQSDYFKDFAEKKDESEYKDFFIRYKDFWKNGEPTQEEVDLIYKRKPRAPYYEVEFKDGSKEKVWCTFAEEQIDLNMDSKVARNFIKETLISMCKNGASIIRLDAFAYAIKKPGTSCFFIEPEMWELLYEIQDIVKEYGVDILPEIHEHYTIQHKIAEKGFWIYDFALPVLVLNALYSGNGDNLRRWLDMSPMKQFTTLDTHDGIGIVDVKDLMTDEEIEETKEAMFTKGANVKKIYNTAAYNNLDIYQVNCTYYSALGNNDKAYLLARAIQFFAPGIPQVYYVGMLAGENDIELMESTKNGRDINRHYYTKEEIKENIENRKVVRDIRELMELRNSHKAFGLDGECITESNGSKLIITRKCGEYTLTLKADLKSYDFTIE
>NZ_CP013352.1|WP_057087522.1|2257555_2258509_-|carbohydrate-kinase
MNKNVFCIGELLIDMVCVDNKGLKDGEKFEKKAGGAPANVAAAITKLEGNAAFLGQVGDDFFGKFLVQILKDLNINTEMTVEKGSTTMALVGIDADGERNFDFLRGSDGEYSFDNVDTSKITSTDIIHFGSATGFLEGELKKTYFKLLDYAKQNNLYVSFDPNYRDALIKPDMLPQFVEDSKSFLKHSDFTKLSDEELTLITGEKDLEAGVKALHDLGVKVVTITLGSKGTYLSVDGENVIIPSIKIKQVDSTGAGDSFVGAVLKQVSDIEDKKNISMDKWKEIIAFANKVGAITCTNYGAINSMPTKEDIEYSKWS
>NZ_CP013352.1|WP_058371815.1|2258572_2260048_-|glycoside-hydrolase-family-32-protein
MSKLTNQVLLEARNYEKDKIKEIDQDSRPSFHISAPIGWINDPNGFSSFKGEYHLFYQYHPYSVQWGPMHWGHSKTKDFIKWEQLPAALAPDEKYDKDGCFSGSAVEFDGKHALMYTSVIDDILENGEHHIRQTQSIAIGDGINYEKLDCNPVIDSNMLPEGSSPVDFRDPKIWRNGNKFYVVIGSRSEDKSGQILLYESEDLKKWNFVSVIDRSNNEIGRMWECPDIFNIDGKDILIISPQEMKAYELEFHNGNSTVYIIGEFDKDNKTLKREDYKTIDYGLDFYAPQTLESEDGRRIMIAWMQSWENRIIPSDFKWCGMMTLPRELKVKNGKLIQNPVREIENYYTNTQKYNSIAIDKETTLDGISGREIDMTIEVNYGIYREFEIKVAKNSEYETIIRYDNEKNILTFDRSYSGRYDDRVHTRSMQVRDQNGKIKLRLIMDKYSVEIFVNDGEQAMTSTFYTPLEAKDIEFNANGLAEINIEKHDIKL

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Crispr_ID: NZ_CP013352_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013352_3

3266641-3266726

Orphan

Consensus_repeat	Method
TCTTTCCCAAGATAATATTTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013352_3

>merge|NZ_CP013352|3|3266641-3266726|CRISPRCasFinder
TCTTTCCCAAGATAATATTTAAATATTAATCTAAAAATTCATTATTATTCTTCTTAGATTATTTCTTTCCCAAGATAATATTTAAA

>NZ_CP013352|3|3|3266641-3266726|CRISPRCasFinder
TCTTTCCCAAGATAATATTTAAA	TATTAATCTAAAAATTCATTATTATTCTTCTTAGATTATT
TCTTTCCCAAGATAATATTTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013352.1\|WP_058371900.1\|3260289_3261624_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP013352.1\|WP_002579058.1\|3263600_3263936_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013352.1\|WP_058146712.1\|3262092_3263520_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|181973
NZ_CP013352.1\|WP_033127508.1\|3277627_3278866_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP013352.1\|WP_058146720.1\|3269582_3270212_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223564
NZ_CP013352.1\|WP_058146714.1\|3263937_3264333_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013352.1\|WP_058146710.1\|3255043_3258184_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013352.1\|WP_058146723.1\|3271691_3273269_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NZ_CP013352.1\|WP_003424020.1\|3258353_3259181_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP013352.1\|WP_003408009.1\|3268311_3269439_-\|betaine/proline/choline-family-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NZ_CP013352.1\|WP_035777619.1\|3259180_3260080_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP013352.1\|WP_043852480.1\|3253682_3255026_-\|glucosylceramidase	unknown	unknown	gnl\|CDD\|307945
NZ_CP013352.1\|WP_043852473.1\|3273329_3273656_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013352.1\|WP_058146725.1\|3275896_3277363_+\|leucine-rich-repeat-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP013352.1\|WP_045143730.1\|3252417_3253431_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP013352.1\|WP_058146721.1\|3270348_3271071_-\|Spo0E-family-sporulation-regulatory-protein-aspartic-acid-phosphatase	unknown	unknown	gnl\|CDD\|379605
NZ_CP013352.1\|WP_058146716.1\|3264782_3266543_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|237053
NZ_CP013352.1\|WP_058146718.1\|3266728_3268312_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|270327
NZ_CP013352.1\|WP_003423897.1\|3274041_3275454_-\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NZ_CP013352.1\|WP_002579051.1\|3271308_3271647_-\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424

Protein	Function_ID	Function_description	E-value
NZ_CP013352.1\|WP_058371900.1\|3260289_3261624_-\|extracellular-solute-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.63515e-22
NZ_CP013352.1\|WP_058146720.1\|3269582_3270212_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|223564	COG0490, COG0490, Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism].	8.0843e-21
NZ_CP013352.1\|WP_043852480.1\|3253682_3255026_-\|glucosylceramidase	gnl\|CDD\|307945	pfam02055, Glyco_hydro_30, Glycosyl hydrolase family 30 TIM-barrel domain.	1.59404e-86
NZ_CP013352.1\|WP_002579051.1\|3271308_3271647_-\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	1.17872e-38
NZ_CP013352.1\|WP_058146712.1\|3262092_3263520_-\|6-phospho-beta-glucosidase	gnl\|CDD\|181973	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed.	0
NZ_CP013352.1\|WP_058146718.1\|3266728_3268312_-\|ABC-transporter-permease-subunit	gnl\|CDD\|270327	cd13609, PBP2_Opu_like_1, Substrate-binding domain of putative ABC-type osmoprotectant uptake system; the type 2 periplasmic-binding protein fold. This group includes the periplasmic substrate-binding component of a putative ABC transport system that is predicted to be involved in uptake of osmoprotectants (also termed compatible solutes) such as betaine, choline, proline betaine, carnitine, and L-proline. The relative substrate preference of this group is not known. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.19943e-159
NZ_CP013352.1\|WP_058146723.1\|3271691_3273269_-\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	9.05115e-117
NZ_CP013352.1\|WP_003424020.1\|3258353_3259181_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	8.66325e-65
NZ_CP013352.1\|WP_003408009.1\|3268311_3269439_-\|betaine/proline/choline-family-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	1.18689e-145
NZ_CP013352.1\|WP_035777619.1\|3259180_3260080_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	8.30071e-70
NZ_CP013352.1\|WP_033127508.1\|3277627_3278866_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	5.00962e-127
NZ_CP013352.1\|WP_058146725.1\|3275896_3277363_+\|leucine-rich-repeat-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	4.39158e-32
NZ_CP013352.1\|WP_045143730.1\|3252417_3253431_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	5.06978e-105
NZ_CP013352.1\|WP_058146721.1\|3270348_3271071_-\|Spo0E-family-sporulation-regulatory-protein-aspartic-acid-phosphatase	gnl\|CDD\|379605	pfam14417, MEDS, MEDS: MEthanogen/methylotroph, DcmR Sensory domain. MEDS is prototyped by DcmR and is likely to function with the PocR domain in certain organisms in sensing hydrocarbon derivatives. The MEDS domain occurs fused to Histidine Kinase and as stand-alone version. Sequence analysis shows that it is a catalytically inactive version of the P-loop NTPase domain of the RecA superfamily.	3.80161e-22
NZ_CP013352.1\|WP_058146716.1\|3264782_3266543_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|237053	PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_CP013352.1\|WP_003423897.1\|3274041_3275454_-\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0

>NZ_CP013352.1|WP_058146716.1|3264782_3266543_+|1-deoxy-D-xylulose-5-phosphate-synthase
MYLEKINSPEDVKNLSINEMNELSSEIRQVLLKKLSEHGGHIGPNLGIVELTVALHHVFNSPQDKIVYDVSHQSYIHKMLTGRRDAFINSEKYDDVSGYTNPHESEHDFFNIGHTSTSVSLACGLAKARDLKDEKDNIIAIIGDGSLSGGEAYEGLNNAAEAGTNMIIIVNDNDMSIAENHGGLYKNLKELRDTNGKCECNFFKSMGLDYYYVNDGHDFDQLISVFNKVKDTDHPVVIHIHTIKGKGFELAETNKEQWHWGMPFVLETGDSKFPMGDAEDYGDLTAKYLLNEMKQDPTVAVITSGTPGVLGFSPERRAEAGRQFIDVGIAEEHAVALASGMAANGGKPVYGVYSTFLQRTYDQISQDLCINNNPAVILVTLASVYGMNDVTHLGLYDIGMMSNIPNLVYLAPTCKEEYFAMLKWSMNQQDHPVAIRIPAMGVINSGNEDNTDYSELNKYQVTKQGKDVAVIALGDFYQLGQSLVEKLSSENGIEATLINPKYITGLDEELLETLKKEHKLVITLEDGILEGGFGERIARYYGSSDVKVLNYGIKKEFLDRYVPDELMKKNRITPEQMSEDIMNILK
>NZ_CP013352.1|WP_058146714.1|3263937_3264333_-|hypothetical-protein
MNFIRGWGDEASMKSFLKSTLGFGIAAIILNTLWGVITSRIGLKGGWICGFILTGTLWYVNHYLGVVENKKESAFIDMGFAVAICSFSRDFLKNGLEGIVTSAPTFICVIIGGTIAGVVAGIIKRHQKQGE
>NZ_CP013352.1|WP_002579058.1|3263600_3263936_-|hypothetical-protein
MNSFGALTTIFGSAIFSFGVIMYWDKFVSLLGAFGGFIAAMLIPGTMWILNHGAENHLIKQSGSIWIDMAWAVGIGVLISSIMQGGSLRKSKWIMLSAIIGGFIGGFLINM
>NZ_CP013352.1|WP_058146712.1|3262092_3263520_-|6-phospho-beta-glucosidase
MAFNKDFLWGGAVAAHQLEGGWNEGGKGPSTADVMTAGAHGVPREITDGVIEGLNYPNHEAIDFYHRYKEDIALFAEMGFKCFRTSIAWSRIFPNGDELEPNEEGLKFYDDMFDELLKYNIEPVITLSHFEIPYGIVKNYGGWRNRKVIDMFVRYATAVMERYKDKVKYWMTFNEINNQKQTGVDIFPWTCSGIIYEEGDNREEIMYQAAHHELVASALVVKKGHEINPDFKIGCMVSFVPIYPYSCNPDDMMLQVEAMHDRYFFSDVHARGHYGAYAIKEWERKGYNIKMDPEDAQILKEGTVDYIGFSYYMSNAVKSDAQNTEDLLSGHSASVKNPYVKASDWGWQIDPVGLRYSLNTLYERYELPLFIVENGFGAIDVKEEDGSCNDDYRIEYLKAHIQQMEKAIEVDGVDLMGYTPWGCIDLVSFTTGEMKKRYGFIYVDKDNDGNGTLNRSKKKSFDWYKNVIATNGEEL
>NZ_CP013352.1|WP_058371900.1|3260289_3261624_-|extracellular-solute-binding-protein
MRLKKVLSLVVTGLLATSFIACGSSSSNSQTASGGSNKIVVWTLSDDLKQFAEHYQEENPGKEVEVTVIAPADYPTKVTTALRGKAETPDIIVGEPQMIPNFMEAGFFEDLSQEPYNAEQYKDKIVDYVYQAGKDETGKVRALSYQMTPGGITYRRDIAKAVWGNDDPAFIGEKFKDVTTITQTAKELKDKGYRIFADTGNLRWFVYGNDPQPWVKDNKLMMTDDRLAYVDAAVKLYQDKLVAFAPEWSAAWYQSMSAPIPVDTDGKELDQVDPNSEKTEVFSYALPTWGTLIIRDNAKDNIGKFGVTTGPNSYFSGGTFMGISSYSKNKEAAWDFLKYCTVTESTSDWWIEKSKGDVVSYIPSLESHKDMENEAFGGQKTYDFWLAESKKIDYSLVTKYDDQISKFFGQAIESVQKGQMSKEDALKDFYKNVKTVYPEIEVPN
>NZ_CP013352.1|WP_035777619.1|3259180_3260080_-|sugar-ABC-transporter-permease
MGDINKWGYAFIFPFLVVFIVFSIYPIFKTLYLSFTNFTGFGQAEFVGIQNYTRVLKDGLFWGAFKNTLKIWSVNVILQFGLAFLLTIIFSDIKYKMKGLPIFRALFYLPNLIAATSVAFLFKALLDWQFGSLNQLLVKLGLITTKINWLGQPGTATIVVAVIGAWMWFGNAFIVLMAGVQGISKDYFEAATIDGAGRWTTFTKITLPLLKPILLYVAITSLIGGLQIFDIPFLITDGLGAPNGALNTVVMYLYNTAFKYNNIGYAAAIAYALFFIIAIFSAFTFKSMYGDSKKAKEGK
>NZ_CP013352.1|WP_003424020.1|3258353_3259181_-|carbohydrate-ABC-transporter-permease
MFTKIKKSIIYIGLILLSVICLGPFLIMMVNSTRSSQEIINSFSLIPGNSLQSNWKIMSDYFNIFSGLKNSLFISVCVTVLSGYFSALTAYGLAIYKFKGRNVVFTTILVLMMVPAQLGLLGFYDLINGLGLMDSYIPLIIPAIASPFTVFFLRQYIVSVLPSSIIEAARMDGASELSTFHRIGLPIMMPGIATMSIGTFIASWNNYLMPLVLLVSPKKFTLPVMMGSLSASKDITANMGATYVSVAVSVVPIMIAFCFFSKYIISSISAGGVKE
>NZ_CP013352.1|WP_058146710.1|3255043_3258184_-|hypothetical-protein
MKADKIVKVDYIDESKYYTIENYDKKLPFASFMAGVAGIHGIPMWSFYVNRGQAISSIGIRDKDNCIMEFFPANEAYKMVYTNGFRTFIKVIYENKEEVIEPFGVTTSDLIERTIKIKNNELKLIEINNEKNLKTEVTYFTIPNEDFAALSRKVEVTNLNDENIKVEILDGLTSVLPYGSKNIEYKEIGNTLRSWMEGYIIDGNTAIYKVRSSTGDSTKMDEVKNGYFYCAFNHSEKSIKPIVDPEKIFGFDTSLKEPVEFYENSISSLSKEDKCYNKVPCAFAGNTEELEPQKSIVIYSYIGYMNSIEKISTAQEKIINKEYFEEKCEEGNEIIDNTLKCVETESAYPLFDEYIKQCYMDNVLRGGYPLKIGGKIYYVYSRKHGDLERDYNFFSIEPNFYSQGNGNFRDVNQNRRMDNYIHPFVGTENIKLFNELIQLDGYNPLKISGKKLYVKDENKKEVLNLIDKDSSSLEEFLNKKFTVGDIYAELIKFDDYNDEDIEKLLNNIVALTEEDNEADFGEGFWIDHWTYNLDLIEEYLNIYPDKLKELLIEDKGYKFFNSPEYVLPREERYELDNEKVRQYVCLGKKGNVQPWVSDRNGNVYKVNLLTKLVMLAGTKFMSLDNMGFGIEMEGGKPGWNDAMNGLPGLLGSSFAETAELQRLLLFIRQNLNVVEGSLQVPLEFYTAMTELNGVLSDALDNKVTQFDYWNKVSNIKEVYRASTNYEVSGENKEIYVCELEDLLNKMIEKINIGIKDIKKLNDGKIPTFMYYDVVKYELNEKNQVKPLEFKVNFLPMFLEGAARYLKIVNNIEEKHEIYDTTINSDVYDKKLKMYKTSESLEAVSFEIGRARTFTPGWLERESVFMHMEFKYILELIKSGLYDEFFESIKSAMPPFMDPEVYGRSILENSSFIASSSNPDEHNHGRGFVARLSGTTVEMLNIWKLMMVGNKLFTYKDEVLTFELNPILSKDFFKDGIIKTTLLGSIKLTYINAENKNTFGEDRGIVNKLKIVDFDGNKYEFYGNKICGEIAAKIRDNQIKEIEAVIL
>NZ_CP013352.1|WP_043852480.1|3253682_3255026_-|glucosylceramidase
MKKYNVYETYKDGKEKLELKKLDDIALKSESNHNACIKVNTGNKFQKILGFGGALTESSSYALSKLDDDVRKKVLKSYYDKEEGIGYKFGRIHINSCDFSLENYTYVEENDLTLDTFTLERDEKYVLPLVREVKEISEGDLTILASPWSPPSYMKTNGEMNHGGKLKEECKQLWADYYVKYIEKMKEKDIDIWAVTVQNEPAAIQTWDSCEYTAEEERDFVKYYLGPTFHNNNLQDKKIIIWDHNRDIAYERAKVVLEDEEAAKYVYGTGLHWYVSEEFANVSKIHNEFPDKHLIFTEGCQEGGVHLGSWDTGERYGRNIIGDFNNYMEAWMDWNIALDETGGPNHVGNLCDSPVIIDTKEKNVIYNSSFYYIAHFSKFIKENAIRVESTVEGEKVYCLSCINEDNTICSVIMNESDDIKIVDLEIDGDKVSLQLKPHSIYTIKEVK
>NZ_CP013352.1|WP_045143730.1|3252417_3253431_-|LacI-family-transcriptional-regulator
MSTIYEIAKIAGVSPTTVSKVLNDYPDVSDKTRAKIKKILEEENFYPNSQAQNLSTKKTWTLGIVYFENLGVGLSHPFFSGVIEAFKNQADSHGYSLLFGSKNNRLGNDTFLEYFKYINVDGIAIICTDPRDKETLQLIESDFPIVVIDMFSSNTSTVTSDSAQGCRLAINYLYNLGHRKIAHIEGISKEDNWPSSIRKEYYIRAMKDLNLDVPDEYIVDGVNFDVSGGYEAMKKLLELEEMPTAVFASCDKLAIGAIDAIKEAGLSVPEDISIIGFDDIELAKYVTPKLTTIRQDCTSVGKAAVDLLVEQINAKAKLKINKVIPVELIERESCRKI
>NZ_CP013352.1|WP_058146718.1|3266728_3268312_-|ABC-transporter-permease-subunit
MSDFFMNLYLKKSEVISLLLEHIQLTLLAVLIAVVIGVPLGIFITNYKKLAKIVIGFANLVQAIPSLAILGFLIPVVGIGSVPAIIMVVLYSMLPIIKNTYTGISNINPDMIESAKGVGMTNIQILKIVKIPLAMPMIMAGIRISGVTAVGLMTIAAFVGAGGLGYLVFSGIQTVDNNLILFGAIPAAILALIIDYITSKIEYAVMPNGIRKSDGTMKVKRGNKGKNKKNKIIALVTSVILIIILLFSTNVFNKSNNKIVIASKNFTEQIILGNMLEQLIEAKTDIDVETKLNLGGTQVAYSALKSGSVDLYVEYTGTAYVNLLDIKDGNTNPDEVYKKVNEIFKEKENIEFLDPLGFNNTYALVVRKDTAEKYNLKSISDLKKVSEEFLMGPTIEFANREDGLLGLDKAYNINFKKVKPIDGGLRYTALMNNESDVIDAFTTDGLLDKFGLKVLEDDKNFFPPYYAAPLIRMDTLKEHPELEEVLNLLSNKITDEKMRKLNYEVDVNGRDPKVVANEFLVSEGYIN
>NZ_CP013352.1|WP_003408009.1|3268311_3269439_-|betaine/proline/choline-family-ABC-transporter-ATP-binding-protein
MIEFKNIKKSYKSKIILENFNLSIDSGKLVVLIGASGCGKTTLLKMINRLISITEGEILINGKDINKMDPIKLRRGIGYVIQQTGLFPHMTVKENIEIIPRLMKISERKIEKKTIELLNMVGLDPNEYLYRYPAELSGGQQQRVGVARAFATDAEIILMDEPFSALDPITRTELQEQLFNIQKEYNKTIVFVTHDMDEAINIADMICILKDGKIIQYDTPENILKNPENDYVEEFVGKNKIWAKPEFIKAEDVMINRPATVSIKRSLLQAREIMREKTVDSLLIVDKEGMLLGYVTLSDIQKIDNKSILVGEVMRRSPEYVTEDTNLLDLLEKFTGLKRGYLPVCNENGKLMGLVTRSTLISVLSSQYIDIGGDN
>NZ_CP013352.1|WP_058146720.1|3269582_3270212_+|GntR-family-transcriptional-regulator
MNNSSIPTYKKIALDIANKIQINNILEGDILHGRSTLSSKYNVSPETIRRSMILLEDVEVVKTIKGKGILVLSREKAISFLNRNKSIDSIRSYKTEIDKLLNNRKEIENQLLKSIQGIIDYSSRFNEVNNIIPLEFVVPENCLYIGKTVGEIMFWQNTGATLIAVKRNDELLLSPGPYISLNPNDVLIVVGNDNIRNSVPQFLYPKNNL
>NZ_CP013352.1|WP_058146721.1|3270348_3271071_-|Spo0E-family-sporulation-regulatory-protein-aspartic-acid-phosphatase
MKEICDNCKINNRIEEYKEKLNSSIENRNGDLLDDEVVLSSQFLDNFVYKCVSCNKNINYLSKLNLREVFGTHTTFYYYGEQHLLVNLYFYINEGIKNNELIYISMEEELYNKLLDFLISNNVSTENIKFKNVKELILGHKKGGFNGLVETAMGILGSSNIEKYNGLRWIGQPSFAIKGTSQNDFLEMEEDLNKFIKNMNAALLCVYDAYDYMHKGKIINKKVIEESFKTHSFVLNNYVS
>NZ_CP013352.1|WP_002579051.1|3271308_3271647_-|P-II-family-nitrogen-regulator
MKKLEIVINSEKLEDLKKILSDCNANGVMISNVMGYGNQKGYKTIYRGTEYSVNLLPKVKVETVVPADVAEKIIDKVLKEISTGNYGDGKIFIYDADDIVRIRTGERGKDAL
>NZ_CP013352.1|WP_058146723.1|3271691_3273269_-|ammonium-transporter
MKKSLKLLGIILFLGALALTFALAISPTSGSDPTGAAYIATTGNETITDVATTANKAYYGANYVWVMITGFMVFFFQCGFAMVETGFCRGKNAAHTMTMNFMVFLVGAIGYFLTGFAIQFGGSGGAAGLGTGGSALNAMLSIPGLGGILGYKGFMLSGNGIYDPGIFALFFFQMVFMDTTVTIPTGALAERVKYSAVIILSFFISMFLYPLFGNWVWGGGFLATLGQNFGLGHGVVDFAGSAVVHSMGGMIALSSAIVIGPRIGKFKKDGTARPFPGHDIPMAIIGTIILFFCWFSFNAGSTLNSSDFRLAVVATNTMIAGAVGGLVAMFYMWIKYGKPDPSMTANGALAGLVAITAPCAFVNGPCAFFIGGIAGYLVCISVAFVENKLKLDDPVGAISVHCVNGVWGIIALGLFADGAYGDGINGVAGGVRGLFYGDPSQLVAQLIAVAVLVIWGFGVSYIFLKVLDKVWGLRVKPEEELAGLDIPEMGVSAYPDIQLIKSPELDYYSADNIEIKQIKTFKEKV
>NZ_CP013352.1|WP_043852473.1|3273329_3273656_-|hypothetical-protein
MKFINSNDDSILSKKIAVYFLQCVSLMIVFLGMFFSIFSAINHISIKVLSVNISGIVFGVLVFYLGIKYYLSVCNLKEKLLKNKYKFSWSNFNFQKGRKISSFIKGKF
>NZ_CP013352.1|WP_003423897.1|3274041_3275454_-|glycoside-hydrolase-family-1-protein
MFHKKLKNFPKDFLWGASTSAYQVEGASLEYGKGPSVQDIKKIPEGTPDFKVSSDHYHHYKEDVALFAEMGFKAYRFSISWARLIPNGVGEINPQGIEFYGNLIDECLKYGIEPIVTMYHFDLPAALQTKGGWSNRETIDAFVNFAKVMFENYGDRVKYWLTINEQNMMTLVGDVIGTLDGIETDNVQKELYKQNHHMLIAQAKAMKLCHDMCPNGKIGPAPNISAVYPASSKPEDILAASNCSAIRNWLYLDMAVHGRYNPTAWNYMVEKGIEPTIEDGDMEALRSGHPDFIAFNYYNTATVEAFPGEITNERSSGDQQSGHGEQGMFKGVSNPNLQKTEFGWEIDPVGFRNTLREVYERYALPLIITENGLGAYDKLEENDTINDDYRINYLRKHIEQAQLAISDGVDLIGYCPWSAIDLISTHEGFKKRYGFIYVNRDEFDLKDLRRIRKKSFFWYQNVIKTNGEEL
>NZ_CP013352.1|WP_058146725.1|3275896_3277363_+|leucine-rich-repeat-protein
MLRLSRKLSKLILIAMSINIINTTNVFAAENNSNITISNGIATISSNVTEIDSSTFSENNNITKVIIPSNVKKIGEGCFSNFKNLKEVIIEDGVKEIGSDAFIGCENLEKINIPSSITVVGDFAFIGCSKLKDVDFQSKTTNIGGSTFLYTAWLDKIRDDNGLVIINNLVISGKNTSASLTIPDGVKIINSHAFEGCNTLKEINIPDSVVEIRDSAFEACSNLSKVKLSNKLETIGENAFSDCKLQSVNIPSTLKSVQLYSFNSDITVTGAVDLYNSLIKPLKTAKEDNLNILLRNKPYGWGKATESGDKIFYKNSKGELQTGWMDLDGKKYYFYSNGQLATGFIDLNGTKYYFDPSSGNNLGNLVVGWKNINNNWYYFNQSGDGDKVAGFMRTSWLYDDGTMATGFINLNGAYYYLNNSGSMVTGWQYLQNSWYYFNKSDDGGLEGLMKKGWNRINGNWYYFNYSDGKMAHDTWIDGYYVNSSGTCV
>NZ_CP013352.1|WP_033127508.1|3277627_3278866_-|IS256-family-transposase
MTKKIDTNFDYNEEIKKCKTIDDVMGKNGLIQKLVKDVLENILEGEMEEHLGRNKYERTESNNQSNRNYRNGYSSKNLRSSFGDVDLDVPRDRNAEFEPQIIKKYETVCTELDKKIISLYAKGMSTSDIQSEIEDLYGIKISPSMVSKITDKVLASATEWQNRALDKIYPIVYLDAMYFKVRSNGKIINKAVYICLGYTMDGYKDILGIWVDEAEGAKFWLGICNDLKNRGVKEILIACMDGLKGLPQAIKTVFPSVNIQTCIVHQIRNSIKYIASKDKKAFMKDLKEVYKASTEELALAQLDNLKSLWGDKYAIVIDSWYNNWSNLSTFFDFSPSIRKMIYTTNALEGFNRQIRKFTKVRVIFPTDESLNKCVYLATMEIIEKWSQPTPNWGATLAELSIIFEDQLKDELA

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Crispr_ID: NZ_CP013352_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013352_4

3321010-3321098

Orphan

Consensus_repeat	Method
TGTTAATATTATTACATTTGTAGTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013352_4

>merge|NZ_CP013352|4|3321010-3321098|CRISPRCasFinder
TGTTAATATTATTACATTTGTAGTTATCTAGTAATTATGGTCTTTTAATTCAAAATTTTGCTTTGTTAATATTATTACATTTGTAGTTA

>NZ_CP013352|4|4|3321010-3321098|CRISPRCasFinder
TGTTAATATTATTACATTTGTAGTTA	TCTAGTAATTATGGTCTTTTAATTCAAAATTTTGCTT
TGTTAATATTATTACATTTGTAGTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013352.1\|WP_002582347.1\|3317305_3318901_-\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NZ_CP013352.1\|WP_002581975.1\|3336783_3338367_-\|IS1182-like-element-ISClbu1-family-transposase	unknown	unknown	gnl\|CDD\|372705
NZ_CP013352.1\|WP_058371913.1\|3341952_3343362_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013352.1\|WP_058371903.1\|3304062_3305913_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|270700
NZ_CP013352.1\|WP_058371912.1\|3338570_3340352_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP013352.1\|WP_003423738.1\|3340983_3341946_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP013352.1\|WP_058371909.1\|3327106_3328099_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226202
NZ_CP013352.1\|WP_058371905.1\|3312213_3314226_-\|cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|119407
NZ_CP013352.1\|WP_058371947.1\|3314880_3317121_-\|cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|119407
NZ_CP013352.1\|WP_003423833.1\|3311472_3311871_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013352.1\|WP_058371910.1\|3328592_3330830_-\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP013352.1\|WP_058371904.1\|3308000_3311072_-\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP013352.1\|WP_058371907.1\|3321207_3324225_-\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP013352.1\|WP_043852464.1\|3302170_3302872_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013352.1\|WP_058371908.1\|3324870_3326514_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP013352.1\|WP_058371906.1\|3319946_3320996_-\|bacteriocin	unknown	unknown	gnl\|CDD\|227588
NZ_CP013352.1\|WP_003407822.1\|3303172_3303871_-\|NTP-transferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|227093
NZ_CP013352.1\|WP_058371911.1\|3334819_3336334_-\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP013352.1\|WP_033127685.1\|3331352_3332330_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380478
NZ_CP013352.1\|WP_058146735.1\|3306521_3307514_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226202

Protein	Function_ID	Function_description	E-value
NZ_CP013352.1\|WP_002582347.1\|3317305_3318901_-\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NZ_CP013352.1\|WP_002581975.1\|3336783_3338367_-\|IS1182-like-element-ISClbu1-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	3.24262e-35
NZ_CP013352.1\|WP_058371903.1\|3304062_3305913_-\|phosphotransferase	gnl\|CDD\|270700	cd05151, ChoK-like, Choline Kinase and similar proteins. This subfamily is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate and displays negligible activity towards N-methylated derivatives of Etn. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	9.37029e-49
NZ_CP013352.1\|WP_058371912.1\|3338570_3340352_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	7.60826e-35
NZ_CP013352.1\|WP_003423738.1\|3340983_3341946_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	7.71525e-28
NZ_CP013352.1\|WP_058371909.1\|3327106_3328099_-\|hypothetical-protein	gnl\|CDD\|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.22583e-08
NZ_CP013352.1\|WP_058371905.1\|3312213_3314226_-\|cell-wall-hydrolase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	2.49148e-68
NZ_CP013352.1\|WP_058371947.1\|3314880_3317121_-\|cell-wall-hydrolase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	2.147e-60
NZ_CP013352.1\|WP_058371910.1\|3328592_3330830_-\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.38915e-35
NZ_CP013352.1\|WP_058371904.1\|3308000_3311072_-\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.70184e-19
NZ_CP013352.1\|WP_058371907.1\|3321207_3324225_-\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	5.60546e-25
NZ_CP013352.1\|WP_058371908.1\|3324870_3326514_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.85655e-39
NZ_CP013352.1\|WP_058371906.1\|3319946_3320996_-\|bacteriocin	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	1.57954e-16
NZ_CP013352.1\|WP_003407822.1\|3303172_3303871_-\|NTP-transferase-domain-containing-protein	gnl\|CDD\|227093	COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane].	5.44976e-71
NZ_CP013352.1\|WP_058371911.1\|3334819_3336334_-\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	4.06997e-39
NZ_CP013352.1\|WP_033127685.1\|3331352_3332330_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|380478	cd01536, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2) receptors such as LsrB and LuxP which are highly homologous to periplasmic pentose/hexose sugar-binding proteins.	3.51643e-63
NZ_CP013352.1\|WP_058146735.1\|3306521_3307514_-\|hypothetical-protein	gnl\|CDD\|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.33551e-08

>NZ_CP013352.1|WP_058371906.1|3319946_3320996_-|bacteriocin
MRNKFLNKLIAVSIVLTAATVMIPMKTEAAWINNYYGGFAYSNGYYLSTGWNMINGTWYYFNSLGVMQTGWLNSNGTWYYLDQSGAMQTGVIQVEGKIYLLGPSGGMQTGSNIINGKMYYFGPDGVCMGTDVPTPLKGYDYYGNPVQPYVPSQISNPNAVMDSNIPLENGQKIEEQYRVYYKDDDGDLILTKRIDADTKITLYEPDKAGYEFIEWNTKKNGNGTSYDAGDKVKLTGDLTLYAQWDEVETDDDSDEDTIKVTGITLGAVGYTGTTINISVGDTVQFTRKIAPSTATNTKVTWSVKNGSTGKAEITSTGKLTALQPGTVTVRATATDGSKVFKEMTVIIEN
>NZ_CP013352.1|WP_002582347.1|3317305_3318901_-|peptide-chain-release-factor-3
MADYIKEIEKRRTFAIISHPDAGKTTLTEKFLLYGGAIRLAGSVKARKASKHAVSDWMEIEKQRGISVTSSVMQFNYNDHCINILDTPGHQDFSEDTYRTLMAADSAVMVVDAAKGIEDQTRKLFQVASLREMPIFTFVNKMDREARDPFQLLDDIENELGIKTYPMNWPIGSGKEFKGVYERDNNRIIAFNGGNHGQNEVEAIEGTPDDPKFREILGEALHDKLMEDIELLDIAGDELDLEAVRNGELTPVFFGSALTNFGVEPFLEHFLEMTTAPLARHSSVGDIDPFEDKFSAFVFKIQANMNKAHRDRIAFMRICSGKFNKGEDVYHMQGGKKIKLAQPQQFMAQDREIVEEAYAGDIIGVFDPGIFSIGDTLCAASKKFKFEGIPTFAPEHFARVRPVDTMKRKQFVKGCTQIAQEGAIQVFKEIHIGMEEIIVGVVGVLQFEVLEYRLKNEYNVDIKMDRLDYRYVRWIEDQSIDMDSLNLTSDTKKVKDMKDRNLLIFQNDWGISWALDHNKDLVLSAVGKNDD
>NZ_CP013352.1|WP_058371947.1|3314880_3317121_-|cell-wall-hydrolase
MILGLVPTLSVQAATTDFKIISKTEVTAAQAKKWAQSKGATDTFADLAKLYWKYAEECGGVNPGIAYVQAAKETGYGRFGGVLDESYNNPCGMKTSSGGGDYDKEAHQRFNSWDEGVQAHMDHLALYAGADGYPKANTYDPRHFVTIKGRATTTNSLGGKWAPSATYGEEIGKLYMSLMDSAGVIFEKDEDEDLWEDVEDEEDTSAAPNPGTVEKKPADLSIEEAIKLPEKITNDTSGTDSSQGSGNDSPNITSTIGWKNVDGNWYYYKSDETKAFGWIKPDSGWYYLDDADGKMVRGWLKNNNKWYYLDESGAMITGWKLIDSKWYLFDKNGIMTTGVQNDGNSSYYLDKSGAMIEEQGWKKVEDKWIYLEKGGKIKLGWLKENNAWYYLQGDGSMVNGLKRIDGQVYSFYDNGTMQTGWKSVNSNWYYFKSSGEMTTGWTYDGDTCYYLYDNGAMAKGWITIGDSWYLLSSSGVMQTGWVTSNGDTYYLDKSTGRMVTNTTVDGYKIGKDGKRKGKVNQGDSNSNNSNSNNSNSNNSQTGPGSTGKVIYVDAGHDYGKDSGAVATINGVTYSETDLNMQVADKLKTSLENRGYTVIMTRNLGEKPSFSSLTESLSYRVNKANNANADLFISIHHNSAGETAKGIETLYSEVSQDDAFGGQYDSTRIAKSKSLASEINNNIASSLDLTNRGGKSQNLYVCRNTKMPAVLVEVGFITNAEEAVRCSDPSSQQRVAEAIAAVVSKHY
>NZ_CP013352.1|WP_058371905.1|3312213_3314226_-|cell-wall-hydrolase
MKIRERLASFFIALFVAFSFIPSMKVMADTVADINIISDTKVTVAQAEKWAKSKGATDTFISLAELYFKYADECGNVNPGIAYVQAAKETGYGKFGGVLDESYHNPCGMKTSSGGGDYDPNAHQKFNSWDEGVQAHLDHLALYAGADGYPKSDTFDPRHFVTIKGKAPTVNSLGGKWAPSTVYGEEVNSLYRDLLKSAGVTIGSEEIPNEDNSGNNSGSNSGSGSNSNGSNNSGTPGGSTNVQPPKDTVEPQGLPVNKPIAITADNSTNISSNIGWKLEGGRWYYYRSDGSKATGWIKHDANWYYLYSDGVMANGWVQLGSTWYYLQSSGAMKLGWLKDGSKWYYLQGNGAMVTGFNSIDGKTYFLDSSGTMRVSWFKISGQWYYFNTDGSMLTGWIRPDGNWYYLFSNGIMASGWLARDGELYCLSESGVMQTGWVYEKGGYYYFHPTSGKMLRDTVVDGWEIGPDGKRGDRVGGGSSKLIVIDPGHNFGGDDGAYGYHSGVTYSERDLNMQVALKLKTKLEAYGYQVVMTRNESDRETLSVSESLAKRVNLANSLNADFFVSLHHNSAGSESANGVETYYSSNASNSNNISISRNMATKINNAIVGKTGQYNRGAKDGNLYVCRNTNMPSVLVELGFVSNPTEAAKCATWTNQDLAASAIAEAIASSI
>NZ_CP013352.1|WP_003423833.1|3311472_3311871_-|hypothetical-protein
MNWFRKFMYGRYGVDELSMVLVGVSIALLLLSGLLPRSLSILSLIAYIPMVIYIFRIFSKNIFKRQQENYKYISFKNSMLSKAKKYKGKIQGAKTHKYFKCPSCGQELRVPKGNGKITITCPKCKTSFKAKS
>NZ_CP013352.1|WP_058371904.1|3308000_3311072_-|cell-wall-binding-protein
MKKIVKRLLALVIVFASMFSFLPLQFGDNGQEANAANDSSVDISYADLSLRVVGGTSILDKKTDDTVGKLPYYNTSDGENTFDLTISDFSKTENQIKEELLKKYPEGGSGETTYVSNAYMNIISLNNIKLATRSGAEIPEGRDALDDLEIKMEKITPSGALNRFGVRFDNMPLGVDRIDYNLLGTVQKIKYTVNKETSTVTLEKSGTYDNVNLSESIDSFIINNGKDFVGKNVESFTLDQYVGKRDLIDSEETKYNNKAPLLYTAEAEADETIKMRYTWEVPDSLTALNYKMKFTMDLFNTHDNTNVYVNGTKGQGQAIDSNTISGFLNDLSNNDQFVVIKTKNGTDIAKSYSAEIRFPKKKTENDFSLIEAGVLKAEYANDSSVKAYIGKKFTETAKTDADGNRYVEYKGTITIDPKARMVCLRPKVVSGVNVEYELYNNYTVNGITKAAKAYELINGQAYIDFNLGDENELELQIKDASTQKLLAKYIYTVKQRDDAEKAFNENFIFDDNNSNTYLTREGSKEKISFKVGKSENRSTFDLYTKDKNEVKITLDPDGITNSNEYFKVWTSDTLDGNNFTEAQASIDNEFDINSGIRDTDLYVDISKAKRIMVQAYYDEVTEKDGVYTLVKSYSLGSKYIFFIPANINSSDTDDNQKSDNAVLSNIKVKGQTLYNLDEDKNGFSIDSRNYRVTVPKDQTTAVLTVVPEDENVKSIVATVSGTDTSYELYPGEETEFMLNSSGITDLEITVTAQNGKKTEVYNLSIINNSKGGSSKLKDLILSSGDFNFDSDVYTTKVQVEQSVNKISITPIAEDSKAKITINGQKFTGKPISVSLAGKQTTEVDIEVESEDGESTTTYTLKIKRVSVISDDDSDNNQGTTEDIYYDYDNDCWVDTTKYDEWGTIKNRVMYFDKRGRQVKDRWIYTGKKWYYLNEAGYRATGWKIDDETGQRYYMDNVTGEMKMGWMNLNGSWYYLGTTGVMHTGWLWLNNNWYYFTENGEMITNQSMVIDGKMYRFATDGRIY
>NZ_CP013352.1|WP_058146735.1|3306521_3307514_-|hypothetical-protein
MIERDWKFEKIKKYKENALRENIYNKENVKKYKECPYCGSKSFIKYGNYNRIQRYKCKNEECKKTFSNTTNSVWKYLKHKPEKWFEFIELMGEHTTLNECAAKLEISIVTAFYWRHKIFHAIENNYKPEKFDEVVYVDTYYTEKCYKGSRNKNYTYADKVKNKFDKMYGLVPRNVSVLIAEERGKMPLIRRTENDETIVNNFNNNVLKIAAKDCYMRTDYFTNKKLKNNLLQYNKKLSNETKKKYGLKIIGNRIEDKIKEDKKKNIMAYLTAWLSRCKGIATKYINHYYNFYSLIDSEKVFDYMSIFFELLKNGSYTSVNQLRKTHIENY
>NZ_CP013352.1|WP_058371903.1|3304062_3305913_-|phosphotransferase
MLEDRLEILKILNENFNINQRELSKRTNMSLGKVNSVLKEFTEDNFIDRIVNNRGILYKVTDKGMKFLEESIANAKNTRLKLHEEEKKIVKQAVILAAGRAEHFGKPVGLLEIEDFKLIDRTLNILKENGITKIVLVTGYESEQFEEYFKNSRNIKIVKSDIYKWTGTMHSLSLAKEYIDDDFLLIENDLIFEKRAIKELSESPNRDCILFTNESGSGDEAFVEIRDNHLYKMSKDIHQFNRIDGEMIGLTKVSYKLYEMMLEEFKGNVNPYLNYEYVLLDVARNYNIGFVKIDDLAWGDADSIKEYEKIKNYLYPTIRRRELNYEINNIKSIVCEAFKVEDEDITEVTPAGGMTNKNYRICVKGTRYILRVAGTGTVQMINRNTEMFNSAIASEKGFNVEVPYFNLETGVKISKFIENAETLTHRSVKKEENLRQVTKILRDLHESEDFRMDNEFNMFRELEKYEEILRKDEGQFFDDYAEVREKVMALEEELQRCDRVFVPSHNDLVSENLVKDTEGRIYLIDWEYSGINDDMWDLAALSLENEFSEDDIELMFRLYFNGEEPDENSRRRLLIHQICQDTLWAVWTLIKEAEGDDFGTYGIDRYNRAKEYLKKL
>NZ_CP013352.1|WP_003407822.1|3303172_3303871_-|NTP-transferase-domain-containing-protein
MRAILMAAGMGTRLRPLTENTPKSLIEVNGMPLLERQIINLREIGVEEIIVLTGYLHEKFDDIVKKYNLIKVVNDKYDVYNNIYTMYLVRDYLKDAFVIDADNYITRNFLPKVQPKTSVYYSACKENITGEWILKYTETGRIYDVEIAPKNSKASYIMSGASYWTEKDGKIISEKVKKAVEEDKLFDIYWDNIAVENYDNMNVYIEKINSDDIFEIDTLEDLDYLKSKLNNM
>NZ_CP013352.1|WP_043852464.1|3302170_3302872_+|hypothetical-protein
MNVTIIYDNLKDDNSYDHINFLLKNLKLNTPINCTEYFLPTDFSLHCKHYCQCIIGNCDYFNFCSVNKIAKSISDSDLIILVCSSLRKCFLPPSLKLLIEHLSYIWMPHKNHIPMADKIGLVISNDYVPLLPSTGRTLKKHLKFWGIKNILKFTSHDSSKIIPNTNLLSKDYINLLTLSIKIMNIYSSNHTTSSHSGNIIKFPYSQLISNKKFLSNNNPTDNVIPLKKIQNDL
>NZ_CP013352.1|WP_058371907.1|3321207_3324225_-|cell-wall-binding-protein
MKRDLIKKLICCMAITACISSTMPVDVYAATWMNDNMGNYYFYESNTYAVGWRNIDGTVYYFDASGVMQKGWIKYGDSWYYLDNNGALKTGWINYNGEWYYSNSAGIMQTGILLIDGQTYYFGNNGVMKKGNVIINGQFYTIGVNGAIVSNAVPVPDKVFDRNNNCIKQINSVDSTTIMTPDGSKYDNPIVDQSEDGDYEEPARKFTVTFRDENGQELKTKNITDGDTVKMYEPDDENGKGDEDRNFIEWNTKRDGSGKSYDSDEKVKVTKDLTLYARWEELEEQTLVSSISITGSNEVEIGKTTQLTAEVKPSDATNTKVKWSIVDNEDGTASGKASIDQDGVLTGLENGLGKITVKAEAMDKSNVSTTKVITVVEAKNLIESIKINGPDTISEDGAVVKLTADVSPETASNANVSWKITDGSEYAEIDRDTGELKALADGKVTVMASAKDGSGISATKTINITGQSVKATKIQVSGYENVKTVSTGKKLQMVARIYPDNVASANDEVEWSAVYTSGEKIGEQVSINEGTIGVIGDAAGQRLKYAVLNPEYRGKVEVTARSKSDSSILGKTTITVVKDAESVDIKAIDTSGNDITNKPEITNNAGKLNLKAVLNPSDTTDTSSVKWSMELIDGDGKDNDVSNYATLTSGETSAIIGAKKNGVIKVTAIANDSSKAIGEITIEFSGQKIYATKIDLYTDIESNGVIKRTEIEEGYEFNIQKGASVTVEGEVGPENATDKNITWSVLGDKDYVTPKIEGNKLTITANKELSSEMVTVRIKAVADNIIKEFKINIYENIQGVLVSSPNVVISGQDFKVTSKVLPENVNGNKIKLSAITSANDGSLTGSAFVTSDVTVSRNSATYTVTPVNPGTIKLQAVATLNSSEDSYTTDVITVLKAIENINLESTINQVTLENGQSGNINFTAKVNGEDVGSYINFLKWEIISQPKNVTAQISSNGLLSVTRTGDIAIGSQVVVRVSANYDSTKYSEFIIGVSNAPVVDSTATS
>NZ_CP013352.1|WP_058371908.1|3324870_3326514_-|N-acetylmuramoyl-L-alanine-amidase-family-protein
MIKRLKKTSALIVLATTLATIVPVGNMQIRAEAADKYSNEFSNNYNIESLENSISLASEETAEDKQIAEKITQYINGKYPGATVKVQSPKYIKLTITKSIAEKMATQICSSNDTIRQILKNEPNLVKPGASQDEVNKIVDSMTDEQIESVKPKVYNVVYQTILAFNGQSVPIYGYEVMNGEQIEDAGYFVGGKIGALIMQKDGKPLCISVEQIKDFNEQIKNKILEDIKEKISEIIQNSGITEIIDKVLKKVNSVVSDVTDTIEDLSDAIDDLTDSIKDKADDIDDAWDKVFDRFDNDEGWGKKDGYIYYYDKDGISLKGVQKIDGKTYYFNRIDGAMETGWQIVDGKRCYFDEKKGYQLFLQWVQDGEDWYFLSDQGPVKKSEWVNDNGRKYYLKSDGKMTKDWLKIDDDWYYFNGSNGAMEYSTWKYSNDKWYYLNQDGKAANDWTYIDENWYYFRENSCSMETGWFRADGSWYYSDSTGAMKTGWIQGDDGWYYLDDTSGKMKKNEWVYSNGSWYYFNINGAMVTKARYIDGVKYNFNSDGRMA
>NZ_CP013352.1|WP_058371909.1|3327106_3328099_-|hypothetical-protein
MIERDWEFEKIKKYKENSLRENIYNKGNVKKYKECPYCGNKSFIKYGKYNGIQRYKCKNEECKKTFSNTTNSVWKYLKHKPEKWFEFIELMGEHTTLNECAAKLEISIVTAFYWRHKIFHAIENNYKPEKFDEVVDVDTYYTEKCYKGSRNKNYTYADKVKNKFDKMYGLVPRNVSVLIAEESGKMPLIRKTESNETIVNNFNNNVLKIASKDCYMRTDHFTNKKLKNNLLQYNKKLSNATKKKYGLKIIGNRIEDKIKEYKKKNIIAYLTAWLSRYKGIATKYINHYYNFYSLIDSEKVFDYMSIFFELLKNGSYTSVEVLRTNHVEDY
>NZ_CP013352.1|WP_058371910.1|3328592_3330830_-|cell-wall-binding-protein
MRAKFNFKRVFAYLLIFAMTFSFVQIGQANPVKAATSGSKEVNDSFKFIIGDASSGTTKDVDMDYSGDLVLRSVTLSQTYTIMPQAGYNIESVKSSSDKMKITKAVSGTTNTFTIGTIKDYSNFKLTVKVKNSSGEINTYDIRVEFNIDSSLEFNKLRITVDNDDPVTLTYTQCDSEGIYYYEESNPEAKKAKIEMFDDSNNAMSFKVNGGTNKIVNLVGGDNTIELTVTSAGYSKVYTLIITKKGVAKLKSLVPSTGSLSPSFNSDTTEYTVTVPTTQETIAFTPTAIDNSSTIKVKKITVASGKKSQDIKLDEGENEIPIVVTNKDGDVTTYKVTVTRTEKFRSANLKSLKLTSGTLSPTFNKGVYQYTTIVENTVSSVGVTPVAEDANATIEVNGKEIPSGATSPYINLDEGGNVINVTVTDSKGNDNTYVIMITRKYSKNNVNLSSLSVTDGTFSPKFDPEIYAYSVKVPRNIEEVRIKFETQNEKSKVTINGVEYKSGQQSDKIKLDLGANTVVVKVVSEDNKSTVNYTLSIIRDKVQGTLNDWVLVGGEWMYYDGDGIPAKNRWVKYDNQWYHVDVNGYMNKDGWLFDGGKWYYLDPNGIMLYGWIKDTGFWYYLRESGEMVEDNWTMLDGNWYFFNQYGQMQTGWTLYKGKWYYLDDHGVMQKGWITYDKNKYYLDDDGTMRTGWLYNGKVWYYFESSGRMVTGWQTIGNRSYYFDSKGAMKTGMLFLDGRWINLDSL
>NZ_CP013352.1|WP_033127685.1|3331352_3332330_-|substrate-binding-domain-containing-protein
MKKLLSLLMVFVLMFTALGCSKNGSKGTSIGNTKVFASIADDDKFKQTIVSGMESYADENNVDLDVAIAHNNVETQVQQIKDAKTKGYDVIVCILVESDTAQQIINAAGDIPVIFTNVEPDSGRLKSDKYIYVGSDENEAAKYTFESLKEYFKDKKSFNAVLFEGSMDSKSASVRTESLKSQLKKNGFDVNYVFQDDAGWDREKAKKMFEAFLKLNVSYDCIISNNDEMALGVIDAMEENGIDPSKVPILGLDATPEACKAISNGKMSFSIKQSGEGQGESVIKAAKALKNGDKISEIEHGDSSGKYIWYPYSKVDKSNVQQYMR
>NZ_CP013352.1|WP_058371911.1|3334819_3336334_-|cell-wall-binding-protein
MRKLREGIAATVLALYSLIGIEMLSGSLTCVEAYAKNIEDKPYLKDIYVGLGYNIEFIKDKYEYIVDVDKDVEDIYVKTRPENDNDIIKINGKVITKDDKFKKDLSLEMGKNKVVIEVIKNNDNNEEEYTDNDDFSEDDVQNDKDKYGSAQDKTVYTLYIYRGGADEVYLKNITLDKSNIGYFVNKKNYNIESDENGQLVKLEVETFGDEYSVFVNGNKLDFTNSLSLKFKGIGKYTITLDVVDDETKRKSTYVLNIYRGIPVTPNVSDSINSVLKPNQWVIVNGRWRYNDAVGQPLKNTWFFDMNYNSYFYFNGRGNMKTGWINEGGNTYYLGNDGMMRTGWVEYEGKWYYLDMNGVMRTDWVKNNGEWYYLDQDGSMKTGWIVDKENWYYLNNDGSMETGWILDYKKWYYLSQNGAMKTGWAQYKDDWYYLNNDGSMKSGEWVEYKDKWYYINYSGTMRCGWLYKDDKYYYFNEDGSMRTEPIVLDGYLYNFNEDGSVNFND
>NZ_CP013352.1|WP_002581975.1|3336783_3338367_-|IS1182-like-element-ISClbu1-family-transposase
MNTNNIIPMHQIGFPINIENIISDSDSVRVLYDVMEGLDYSELNRTYSTIGRNPALLPKTMFAIIVYGYMEGIYSSRALEKACKRDINFKWLLQGQLPPGHNSIDRFRRERLAGCIENLFNQLVKKLRELNEIQFKNIFIDGTKIEASANRYTFVWKKSIDKFEDRLQKKIKESLIKMNHDLNLCLIITNAKISVQDANYILDSIRIMIEANNIEFVYGKGKRKSKFQRYTEQLNEFIEKQNKYNEYNSIFNGRNSFSKTDHDATFMHMKEDHMKNGQLKPAYNIQIGVEGEYIVGVDISSERSDQLTFIPFLDRLEKNLNQKYESVTADAGYESEENYAYLESKKQEAFIKPANYEKSKTKKFKSDISKKENMYYNTDEDYYICASGKKMLLKGTKKKKTKSGYETTVSIYECEDCDGCEYKSKCTKAKGNKQIHVAKNFMRLRTNSLKNITTPKGILLRMNRSIQVEGAFGVIKQDYGFRRFFMRGNIKVRTEFLLMAFGYNVNKLYHKTIQNRNGELLHKQQAS
>NZ_CP013352.1|WP_058371912.1|3338570_3340352_-|N-acetylmuramoyl-L-alanine-amidase-family-protein
MIKRMNKLTALMVAATAVASIVPAVSASAAAKLEVQEGNIDAAVAYGDGKYVYDGYLTDDDESGLYFNNGTKDSFLENDEDYEFGSEKYGTKYTIVENDGEDYLLDLSSGKVLDDESIEDLRNNVELKLRTTLKKADDRYATVNNKIVFENNDEIAQVLGNQFGDVWYSYGVKSADSDKTLYGFANESGKYIDASALANMTVSTTDSAVRVTEFDKEKNDAMVSLAEAPKVIAQDSSYLYAITKVNVTIAGEADGTRTYIQKISKAQGDTKDGAYMPKSVDSYEISSNFYIDKDNDDTAKAEELLLDENNMVRVIKDTIYVTTVSEDGKVYVNTIKLKKEKVTKNDGTKKLDVYVAVKDQDDDEKIEGGANAVSIDAEGNTWAVNKGKIYKFNGTEFVEVYTCDRTIDHLDVYDENNLIAWNKENEVFATVQTKDGNGTDEGDKEETKAGWVTNADGTWSYNKADGTKTTGWLLDGSTWYYFNTNGVMQTGWVNVNGTWYYLNPVSNGYKGAMQTGWLNDNGTWYYLQSNGAMKTGWLNDNGTWYYLNSNGSMKTGWLLDTDGNWYYLQSNGAMAKNTTIDGYKLGSNGAWIR
>NZ_CP013352.1|WP_003423738.1|3340983_3341946_-|N-acetylmuramoyl-L-alanine-amidase-family-protein
MKGLNLKKLVAMALTLATVTAVSPVAASAAWKQDAKGWWNTEGNSWSIGWRQIDGTWYHFDETGYMSTGWVIDYSAGYGQWYFMDQSGAMKTGWMQDAGKWYFLQPSGAMKTGWINDAGTWYFAEASGSMLTGVIKVDGQTYYLQSNGAMATGEVEINGTKYTFAANGACVGDAPKADKVFGTTDSGNNSGSSNTDKDTDSDSGSSSGGSSHGGGGSSSSTPAAIKDYSTSANITVENVSDKEADVDTYKVTFNKTLTQSKEGDYAVRDLYVTNEDAVITEEEDGYLVSVKKGSTLDAKGVIRVIRAGKVYYATGIAVTK
>NZ_CP013352.1|WP_058371913.1|3341952_3343362_-|hypothetical-protein
MNNSKKFANIILSIVLVVTIILTVLSSIIRFSATNKGIYLRLLEDSNTYSNVEQALSNKMAAILGNDISENLKESIITEEDIRKEADVVLECVISDLISGQANIPEIDTTIYKERVAEALNTLTGFEAKIRNDKNLTSSIQNNDMCLTPINTINSNEKLIGENMFNVHNLNENKSNDLTLVNMASRAELEAQGRAMLKEKGLTEEEARRKATERGISEQDVWNYLEENGYLDEESQNEESSDSGVQKDEVSDKDTDLSNSSNTTDSNETINNNVQADKSNTSNDNKNDETKVSKKKIQEIVTSVLMDGNKNFDEKVNEISSKLMEEAEKIINAEMEKLNFSKVINSNEFNLAIKITSALYNNFYVLLLLIVIICVLIFFVNKESVLNGLVIIGNSVLVAGVIMSLIFGYVYMSKVYAHIDINLNKAYFEPMFLQCAEYFSKLLCAISIIILFLGLIINIFMMKIKLTRR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

387949 : 460474

Bacillus_phage(22.22%)

transposase,tRNA,protease,coat

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058141691.1\|387949_389533_-\|transposase	IS1182 family transposase	Q9MBP7	Staphylococcus_prophage	9.9e-61	33.1
WP_002582780.1\|389815_391165_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_003429873.1\|391170_391617_+	YaiI/YqxD family protein	NA	NA	NA	NA
WP_003429871.1\|391835_394253_+	triple tyrosine motif-containing protein	NA	NA	NA	NA
WP_058141692.1\|394307_395135_+	lytic transglycosylase domain-containing protein	A0A0H4TGB4	Bacillus_phage	6.6e-24	41.1
WP_024038780.1\|395376_396093_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_058141693.1\|396686_400040_+	intein-containing ATP-dependent DNA helicase PcrA	A7KV33	Bacillus_phage	3.4e-87	26.1
WP_058141694.1\|400215_402207_+	NAD-dependent DNA ligase LigA	A0A0A8J9A9	Ralstonia_phage	9.5e-85	33.9
WP_024038777.1\|402211_402484_+	hypothetical protein	NA	NA	NA	NA
WP_003410901.1\|402794_403085_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_058141695.1\|403106_404564_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_002582790.1\|404583_406014_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_002582791.1\|406068_406371_-	hypothetical protein	NA	NA	NA	NA
WP_024038775.1\|406574_408062_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_058141696.1\|408117_409860_-	hypothetical protein	NA	NA	NA	NA
WP_058141697.1\|409954_410932_+	AIR synthase	NA	NA	NA	NA
WP_058141698.1\|411003_411618_+	XTP/dITP diphosphatase	A0A0P0A2M4	Ugandan_cassava_brown_streak_virus	4.2e-07	31.1
WP_002582796.1\|411640_412126_+	metallophosphoesterase	NA	NA	NA	NA
WP_002582797.1\|414630_415500_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_058371729.1\|415696_416584_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_058141699.1\|416596_417484_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_058141700.1\|417494_419654_+	1,3-beta-galactosyl-N-acetylhexosamine phosphorylase	NA	NA	NA	NA
WP_058141701.1\|419912_421259_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_035764899.1\|421322_422279_+	ATPase	NA	NA	NA	NA
WP_003429739.1\|422313_423453_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
WP_002582805.1\|423756_424233_+	PTS N-acetylgalactosamine transporter subunit IIB	NA	NA	NA	NA
WP_002582806.1\|424264_425035_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_002582807.1\|425024_425870_+	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
WP_002582808.1\|426005_426752_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_058141703.1\|426853_428014_+	SIS domain-containing protein	NA	NA	NA	NA
WP_002582810.1\|428032_428464_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_002582811.1\|428509_429364_+	tagatose bisphosphate family class II aldolase	NA	NA	NA	NA
WP_002582812.1\|431300_433346_+	M13 family metallopeptidase	E3T4I7	Cafeteria_roenbergensis_virus	1.7e-84	32.8
WP_002582338.1\|438960_439908_+	polysaccharide deacetylase	NA	NA	NA	NA
WP_002582337.1\|440211_440697_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_002582336.1\|440701_441535_+	DUF3298 and DUF4163 domain-containing protein	NA	NA	NA	NA
WP_002582335.1\|441925_443305_+	TldD/PmbA family protein	NA	NA	NA	NA
WP_043853366.1\|443307_444651_+	TldD/PmbA family protein	NA	NA	NA	NA
WP_002582333.1\|444740_445532_-	hypothetical protein	NA	NA	NA	NA
WP_033127208.1\|445654_446614_+	FAD-binding protein	NA	NA	NA	NA
WP_002582331.1\|446653_447217_-	hypothetical protein	NA	NA	NA	NA
WP_035764760.1\|447234_447867_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA
WP_002582329.1\|448236_449256_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.5e-65	41.6
WP_043853365.1\|449264_450269_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_002582327.1\|450383_451610_+\|protease	trypsin-like serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	2.0e-21	27.2
WP_003412645.1\|451745_452063_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA
WP_002582325.1\|452142_452502_+	hypothetical protein	NA	NA	NA	NA
WP_043853364.1\|452623_453766_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002582323.1\|453835_454960_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_035764142.1\|455107_456124_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_080630488.1\|456095_456872_+\|coat	spore coat protein	NA	NA	NA	NA
WP_003429682.1\|457051_458086_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_002582319.1\|458245_459367_-	glycosyltransferase family 4 protein	A0A2K9VGK0	Pontimonas_phage	5.0e-06	40.3
WP_002582318.1\|459475_460474_+\|coat	CotS family spore coat protein	NA	NA	NA	NA

DBSCAN-SWA_2

1214702 : 1224793

Prochlorococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058141824.1\|1214702_1218449_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.2e-32	24.5
WP_002579500.1\|1218705_1219185_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.3e-27	43.7
WP_002579501.1\|1219184_1219892_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SLB8	Cyanophage	2.1e-47	44.8
WP_002579502.1\|1219999_1221412_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-55	32.8
WP_035762527.1\|1221503_1222508_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.5e-67	45.4
WP_058141825.1\|1222495_1223104_+	phosphoribosylglycinamide formyltransferase	R9S626	Prochlorococcus_phage	3.7e-24	37.5
WP_002579505.1\|1223284_1224793_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	E3SNU8	Prochlorococcus_phage	1.8e-35	46.0

DBSCAN-SWA_3

1766372 : 1834341

Staphylococcus_prophage(16.67%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002580000.1\|1766372_1767578_+\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
WP_002580001.1\|1767611_1768499_+	two pore domain potassium channel family protein	NA	NA	NA	NA
WP_002580002.1\|1768577_1769123_+	hypothetical protein	NA	NA	NA	NA
WP_003411964.1\|1769333_1770044_+	membrane protein	NA	NA	NA	NA
WP_058371746.1\|1770219_1771803_-\|transposase	IS1182 family transposase	Q9MBP7	Staphylococcus_prophage	9.9e-61	33.1
WP_002580004.1\|1772345_1772651_+	STAS domain-containing protein	NA	NA	NA	NA
WP_003411899.1\|1772682_1774779_+	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_002580006.1\|1774845_1775283_+	ATP-binding protein	NA	NA	NA	NA
WP_058141931.1\|1775500_1777471_+	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_002580008.1\|1777691_1778549_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_002580009.1\|1778918_1780580_+	Na/Pi cotransporter family protein	NA	NA	NA	NA
WP_002580010.1\|1780945_1781485_+	2'-5' RNA ligase family protein	NA	NA	NA	NA
WP_080646785.1\|1781785_1784524_+	calcium-translocating P-type ATPase, PMCA-type	M1HX51	Paramecium_bursaria_Chlorella_virus	1.8e-102	32.3
WP_002580012.1\|1784749_1785067_+	hypothetical protein	NA	NA	NA	NA
WP_002580013.1\|1785164_1785656_+	HD domain-containing protein	NA	NA	NA	NA
WP_024040156.1\|1785699_1786284_-	serine/threonine protein kinase	NA	NA	NA	NA
WP_002580015.1\|1786555_1787935_+	Trk system potassium transporter TrkA	NA	NA	NA	NA
WP_002580016.1\|1787924_1789373_+	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_058141932.1\|1789544_1790261_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_002580018.1\|1790429_1791326_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_058141933.1\|1791415_1792732_+	polynucleotide adenylyltransferase	H7BUW3	unidentified_phage	4.8e-69	38.1
WP_003427727.1\|1792887_1793151_+	late competence development ComFB family protein	NA	NA	NA	NA
WP_046057737.1\|1793311_1795348_+	penicillin-binding transpeptidase domain-containing protein	NA	NA	NA	NA
WP_058141934.1\|1795667_1798895_+	sensor histidine kinase	A0A1V0SGX0	Hokovirus	2.5e-18	29.2
WP_058141935.1\|1798964_1800335_-	iron hydrogenase	NA	NA	NA	NA
WP_058141936.1\|1800661_1801204_+\|protease	collagenolytic protease	NA	NA	NA	NA
WP_058141937.1\|1801646_1803044_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_058141938.1\|1803107_1803710_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_002580027.1\|1803973_1804471_+	hypothetical protein	NA	NA	NA	NA
WP_035761877.1\|1804608_1805535_+	LD-carboxypeptidase	NA	NA	NA	NA
WP_002580029.1\|1805579_1806500_-	DMT family transporter	NA	NA	NA	NA
WP_058141939.1\|1806660_1807272_-	hypothetical protein	NA	NA	NA	NA
WP_002580031.1\|1807648_1809316_+	2-isopropylmalate synthase	NA	NA	NA	NA
WP_058141940.1\|1809401_1810463_+	histidinol-phosphate transaminase	NA	NA	NA	NA
WP_003411879.1\|1810608_1812141_+	cell wall-binding protein	NA	NA	NA	NA
WP_058141644.1\|1812165_1813545_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_002579879.1\|1813978_1815115_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_024040140.1\|1815318_1816368_+	M42 family metallopeptidase	NA	NA	NA	NA
WP_058141941.1\|1816410_1817373_+	DUF2232 domain-containing protein	NA	NA	NA	NA
WP_058141942.1\|1817464_1818265_-	hypothetical protein	NA	NA	NA	NA
WP_058141943.1\|1818525_1820634_+	carbohydrate-binding domain-containing protein	NA	NA	NA	NA
WP_058141944.1\|1820712_1821267_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_058141945.1\|1821444_1822401_+	cobalamin biosynthesis protein P47K	NA	NA	NA	NA
WP_002580040.1\|1822472_1823096_+	hypothetical protein	NA	NA	NA	NA
WP_002580041.1\|1823121_1824120_+	permease	NA	NA	NA	NA
WP_002580042.1\|1824197_1824935_+	TIGR03943 family protein	NA	NA	NA	NA
WP_002580043.1\|1824968_1825532_-	hypothetical protein	NA	NA	NA	NA
WP_003427677.1\|1825753_1826620_+	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	8.7e-51	44.4
WP_058141946.1\|1827171_1827543_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_058141947.1\|1827750_1828206_+	hypothetical protein	NA	NA	NA	NA
WP_125390888.1\|1828343_1829291_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_058141948.1\|1829419_1829902_+	glyoxalase	NA	NA	NA	NA
WP_058141949.1\|1829977_1830433_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_058141950.1\|1830674_1831598_+	homocysteine S-methyltransferase family protein	NA	NA	NA	NA
WP_045143990.1\|1831634_1832249_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_024040124.1\|1832336_1832711_+	DUF4440 domain-containing protein	NA	NA	NA	NA
WP_033127508.1\|1833102_1834341_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.0e-52	51.9

DBSCAN-SWA_4

1873220 : 1881310

Clostridium_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058371755.1\|1873220_1873727_-	helix-turn-helix transcriptional regulator	Q0SPH9	Clostridium_phage	6.1e-12	39.5
WP_155594175.1\|1873955_1874105_+	hypothetical protein	NA	NA	NA	NA
WP_058371756.1\|1874105_1874405_+	hypothetical protein	NA	NA	NA	NA
WP_035764050.1\|1874373_1874559_-	hypothetical protein	NA	NA	NA	NA
WP_155594176.1\|1875285_1875453_+	hypothetical protein	NA	NA	NA	NA
WP_035764048.1\|1875478_1875718_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A0K2CZ86	Paenibacillus_phage	9.8e-21	60.3
WP_058371757.1\|1875943_1876801_+	hypothetical protein	Q0SPI6	Clostridium_phage	5.8e-47	40.5
WP_043852896.1\|1876793_1877168_+	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	1.0e-16	44.3
WP_035764044.1\|1877195_1877354_+	hypothetical protein	NA	NA	NA	NA
WP_058371758.1\|1877399_1878167_+	ParA family protein	H7BUL8	unidentified_phage	1.8e-47	39.1
WP_058371759.1\|1878172_1879165_+	ParB/RepB/Spo0J family partition protein	H7BVD1	unidentified_phage	1.5e-22	30.0
WP_058371760.1\|1879214_1879631_+	hypothetical protein	NA	NA	NA	NA
WP_043666071.1\|1879646_1879922_+	hypothetical protein	NA	NA	NA	NA
WP_058371761.1\|1879905_1880529_+	hypothetical protein	NA	NA	NA	NA
WP_035764036.1\|1880521_1880950_+	single-stranded DNA-binding protein	A1EAD1	Streptococcus_phage	3.7e-26	51.9
WP_035764034.1\|1880965_1881310_+	hypothetical protein	Q0SPI5	Clostridium_phage	1.2e-22	52.6

DBSCAN-SWA_5

1884366 : 1901000

Bacillus_virus(28.57%)

head,terminase,capsid,tail,protease,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035764109.1\|1884366_1884861_+	hypothetical protein	I2E8Y5	Clostridium_phage	9.1e-29	39.9
WP_035764028.1\|1885015_1885318_+	HNH endonuclease	A0A2I7SC48	Paenibacillus_phage	4.4e-26	62.4
WP_043666037.1\|1885403_1885787_+\|terminase	terminase	Q0H265	Geobacillus_phage	1.2e-15	45.3
WP_058371944.1\|1885776_1887543_+\|terminase	terminase large subunit	A0A0S2SXJ7	Bacillus_phage	2.3e-268	75.7
WP_035764025.1\|1887600_1888806_+\|portal	phage portal protein	A6XMJ5	Bacillus_virus	4.0e-155	66.8
WP_058371767.1\|1888798_1889377_+\|head,protease	HK97 family phage prohead protease	Q0H262	Geobacillus_phage	2.5e-70	72.5
WP_058371768.1\|1889366_1890779_+\|capsid	phage major capsid protein	A6XMJ6	Bacillus_virus	1.2e-118	59.5
WP_035764019.1\|1890792_1891077_+	hypothetical protein	A6XMJ7	Bacillus_virus	3.6e-06	41.6
WP_035764017.1\|1891089_1891374_+	hypothetical protein	Q0H259	Geobacillus_phage	4.6e-33	71.0
WP_058371769.1\|1891373_1891694_+	hypothetical protein	A6XMK0	Bacillus_virus	1.4e-19	46.2
WP_035764014.1\|1891686_1892043_+	hypothetical protein	A0A290FZT5	Caldibacillus_phage	2.9e-21	50.0
WP_058371770.1\|1892039_1892369_+	hypothetical protein	A6XMK2	Bacillus_virus	3.0e-28	59.6
WP_058371771.1\|1892370_1892940_+\|tail	phage tail protein	A0A0U4JWV5	Exiguobacterium_phage	8.8e-60	61.8
WP_043666011.1\|1892951_1893293_+	hypothetical protein	A0A290GJX3	Caldibacillus_phage	3.1e-36	63.7
WP_153741809.1\|1893322_1893496_+	hypothetical protein	Q0H231	Geobacillus_phage	2.6e-07	54.0
WP_058371772.1\|1893515_1896422_+	hypothetical protein	A6XMK6	Bacillus_virus	4.7e-133	48.7
WP_058371773.1\|1896421_1897126_+\|tail	phage tail protein	A0A1L2BYA2	Clostridium_phage	7.8e-66	51.9
WP_058371774.1\|1897125_1898814_+	hypothetical protein	A0A1L2BYA1	Clostridium_phage	1.1e-158	56.1
WP_058371775.1\|1898829_1899675_+	hypothetical protein	A0A1L2BYA7	Clostridium_phage	1.0e-51	74.5
WP_058371776.1\|1899703_1900216_+	hypothetical protein	A0A0U4IVC6	Arthrobacter_phage	3.1e-16	51.9
WP_058371777.1\|1900229_1901000_+	hypothetical protein	A0A0Y0AE86	Bacillus_phage	4.4e-06	33.7

DBSCAN-SWA_6

2277129 : 2282549

Clostridium_phage(28.57%)

integrase

attL 2276479:2276493|attR 2284920:2284934

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2276479:2276493	attL	NA	NA	NA	NA
WP_058371829.1\|2277129_2277846_-	hypothetical protein	S5MP04	Brevibacillus_phage	1.2e-24	41.4
WP_033128325.1\|2277877_2278117_-	AbrB family transcriptional regulator	A0A2I7SC16	Paenibacillus_phage	2.4e-11	44.6
WP_058371946.1\|2278171_2278819_-	AAA family ATPase	Q0H276	Geobacillus_phage	1.8e-32	41.2
WP_058371830.1\|2278847_2279918_-	DnaD domain protein	V5UQV4	Oenococcus_phage	3.1e-21	41.6
WP_002580423.1\|2280162_2280465_-	hypothetical protein	NA	NA	NA	NA
WP_033128322.1\|2280551_2280782_-	DUF739 family protein	A0A0A7RTP5	Clostridium_phage	5.0e-14	56.8
WP_058371831.1\|2280935_2281418_+	helix-turn-helix transcriptional regulator	A0A0A7RTR3	Clostridium_phage	1.9e-23	55.5
WP_058229741.1\|2281445_2282549_+\|integrase	site-specific integrase	A0A0U3U8Y8	Bacillus_phage	8.9e-16	27.2
2284920:2284934	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2814982 : 2867828

Clostridium_phage(68.97%)

transposase,terminase,integrase,capsid,holin,portal

attL 2818176:2818191|attR 2869862:2869877

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002581975.1\|2814982_2816566_-\|transposase	IS1182-like element ISClbu1 family transposase	Q9MBP7	Staphylococcus_prophage	9.9e-61	33.1
WP_002581048.1\|2816670_2817315_-	fructose-6-phosphate aldolase	A0A0E3HNZ3	Synechococcus_phage	3.0e-48	47.7
WP_002581049.1\|2817380_2818088_-	purine-nucleoside phosphorylase	NA	NA	NA	NA
2818176:2818191	attL	NA	NA	NA	NA
WP_002581050.1\|2818189_2819113_-	transketolase family protein	NA	NA	NA	NA
WP_003424913.1\|2819132_2819948_-	transketolase	G9E5U1	Micromonas_pusilla_virus	2.2e-16	34.5
WP_035779099.1\|2819987_2821178_-	phosphopentomutase	NA	NA	NA	NA
WP_058146450.1\|2821374_2822577_+\|transposase	transposase	NA	NA	NA	NA
WP_002581053.1\|2822697_2823099_-	cytidine deaminase	NA	NA	NA	NA
WP_058146452.1\|2823160_2824363_-	Na+ dependent nucleoside transporter domain-containing protein	NA	NA	NA	NA
WP_003424907.1\|2824563_2825349_-	uridine phosphorylase	NA	NA	NA	NA
WP_002581056.1\|2825676_2825928_-	hypothetical protein	A0A0A7RW97	Clostridium_phage	1.4e-17	54.4
WP_002581057.1\|2826103_2826739_+	hypothetical protein	NA	NA	NA	NA
WP_058146880.1\|2826913_2827594_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_003424904.1\|2827595_2828243_-	fructose-6-phosphate aldolase	E3SNX1	Prochlorococcus_phage	1.1e-47	47.7
WP_043662954.1\|2828290_2829217_-	transketolase family protein	NA	NA	NA	NA
WP_058146454.1\|2829236_2830052_-	transketolase	G9E5U1	Micromonas_pusilla_virus	1.5e-15	37.0
WP_002581062.1\|2830112_2830976_-	L-ribulose-5-phosphate 3-epimerase	NA	NA	NA	NA
WP_002581063.1\|2831058_2831748_-	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA
WP_058146456.1\|2831864_2832893_-	hypothetical protein	NA	NA	NA	NA
WP_002581065.1\|2832926_2833220_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_002581066.1\|2833245_2834703_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
WP_002581067.1\|2834731_2835190_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_027636241.1\|2835319_2836384_-	L-ascorbate 6-phosphate lactonase	NA	NA	NA	NA
WP_002581069.1\|2836769_2837549_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_058146663.1\|2837744_2839328_-\|transposase	IS1182 family transposase	Q9MBP7	Staphylococcus_prophage	1.7e-60	33.1
WP_043853196.1\|2839450_2840764_-	sodium-dependent transporter	NA	NA	NA	NA
WP_002581071.1\|2841158_2841482_+	hypothetical protein	NA	NA	NA	NA
WP_002581072.1\|2841644_2842424_-	zinc transporter ZupT	NA	NA	NA	NA
WP_058371851.1\|2843060_2843696_-	hypothetical protein	NA	NA	NA	NA
WP_058371852.1\|2843793_2844465_-	hypothetical protein	M9Q2L2	Clostridium_phage	1.3e-14	36.1
WP_155594183.1\|2844604_2844814_-	hypothetical protein	NA	NA	NA	NA
WP_058371854.1\|2844857_2845682_-	hypothetical protein	Q0SPG7	Clostridium_phage	2.3e-32	42.6
WP_058371855.1\|2845683_2846124_-\|holin	phage holin family protein	J9QD30	Clostridium_phage	6.4e-34	56.3
WP_058371856.1\|2846184_2851542_-	hypothetical protein	D7RWK2	Brochothrix_phage	1.3e-27	26.8
WP_058371857.1\|2851565_2851952_-	hypothetical protein	Q0SPL5	Clostridium_phage	2.4e-21	41.4
WP_058371858.1\|2852001_2852259_-	hypothetical protein	NA	NA	NA	NA
WP_052501809.1\|2852274_2852625_-	hypothetical protein	A0A1S5SF11	Streptococcus_phage	1.3e-29	53.0
WP_058371859.1\|2852636_2856305_-	hypothetical protein	M9Q251	Clostridium_phage	1.5e-14	56.2
WP_052501810.1\|2856346_2856667_-	hypothetical protein	M9Q2I4	Clostridium_phage	1.6e-34	69.9
WP_058371860.1\|2856677_2857013_-	hypothetical protein	M9Q2L0	Clostridium_phage	8.4e-10	39.6
WP_058371861.1\|2857028_2857487_-	hypothetical protein	M9Q1I1	Clostridium_phage	4.4e-54	70.3
WP_043853209.1\|2857495_2857885_-	hypothetical protein	M9Q2F6	Clostridium_phage	3.3e-42	65.9
WP_058371862.1\|2857884_2858259_-	hypothetical protein	M9Q249	Clostridium_phage	2.4e-37	63.7
WP_058371863.1\|2858255_2858570_-	hypothetical protein	M9Q2I3	Clostridium_phage	1.6e-23	55.1
WP_058371864.1\|2858572_2858926_-	hypothetical protein	M9Q2K9	Clostridium_phage	2.1e-35	62.5
WP_043853213.1\|2859278_2860166_-	hypothetical protein	M9Q2F4	Clostridium_phage	1.2e-108	66.4
WP_058371866.1\|2860193_2860802_-	hypothetical protein	M9Q248	Clostridium_phage	2.6e-41	59.9
WP_058371867.1\|2861137_2862394_-\|capsid	capsid protein	M9Q2F2	Clostridium_phage	5.3e-142	61.7
WP_043853216.1\|2862377_2863904_-\|portal	phage portal protein	M9Q246	Clostridium_phage	7.6e-191	64.5
WP_058371868.1\|2864060_2865425_-\|terminase	terminase	M9Q2I1	Clostridium_phage	1.0e-202	76.7
WP_058371869.1\|2865421_2866063_-	hypothetical protein	M9Q2K7	Clostridium_phage	1.1e-26	41.7
WP_043853218.1\|2866100_2866673_-	recombinase family protein	A0A219YB42	Aeromonas_phage	2.0e-32	42.4
WP_058371870.1\|2867210_2867828_-\|integrase	tyrosine-type recombinase/integrase	A0A1L2BY87	Clostridium_phage	2.1e-22	36.2
2869862:2869877	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3678555 : 3690789

Erysipelothrix_phage(66.67%)

integrase

attL 3677369:3677395|attR 3690151:3690177

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3677369:3677395	attL	NA	NA	NA	NA
WP_058141620.1\|3678555_3681504_-	DEAD/DEAH box helicase	A0A2K5B256	Erysipelothrix_phage	1.3e-234	47.2
WP_058371939.1\|3681516_3683430_-	site-specific DNA-methyltransferase	A0A2K5B2C1	Erysipelothrix_phage	2.4e-133	45.2
WP_058141625.1\|3683483_3684242_-	DUF4391 domain-containing protein	A0A2K5B2C0	Erysipelothrix_phage	1.2e-06	23.2
WP_058146856.1\|3684251_3687509_-	helicase	A0A2K5B2B9	Erysipelothrix_phage	7.3e-300	50.9
WP_058141627.1\|3688673_3688853_-	hypothetical protein	NA	NA	NA	NA
WP_058141629.1\|3689022_3689979_-\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	7.1e-38	31.6
WP_058141631.1\|3690339_3690789_-	nucleoside deaminase	A0A2H4PQS8	Staphylococcus_phage	3.3e-09	33.1
3690151:3690177	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3806212 : 3812848

Faustovirus(16.67%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058141651.1\|3806212_3807364_+	aminotransferase class V-fold PLP-dependent enzyme	A0A1X7QGF3	Faustovirus	8.4e-17	29.9
WP_002582832.1\|3807420_3807996_+\|protease	spore protease YyaC	G3M9W0	Bacillus_virus	1.2e-19	36.0
WP_002581275.1\|3808230_3809562_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.8e-24	31.2
WP_002582831.1\|3809661_3810183_-	DUF4446 family protein	NA	NA	NA	NA
WP_002582830.1\|3810222_3811086_-	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	6.5e-14	35.7
WP_002582829.1\|3811099_3811861_-	ParA family protein	Q8JL10	Natrialba_phage	1.4e-20	30.3
WP_058141652.1\|3812068_3812848_-	nucleoid occlusion protein	S5WII0	Leptospira_phage	4.3e-17	40.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013353

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013353_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013353_1

554497-558382

TypeI-B

III-B

Consensus_repeat	Method
ATTTAAATACATCTAATGTTACTGTTAATC	CRT
ATTTAAATACATCTAATGTTACTGTTAATC	PILER-CR
ATTTAAATACATCTAATGTTACTGTTAATC	CRISPRCasFinder

59 spacers

cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

The CRISPR arrays of NZ_CP013353_1

>merge|NZ_CP013353|1|554497-558382|CRT,PILER-CR,CRISPRCasFinder
AAAGTGTTGGCAATCTAGTTCCTGTTAATTCGTTAATTCTCTATTAAAATCCTTTTTCTGCAACCAATCTAAATACATCTCATGTTACTGTTAATCGTACTATCTAGTAATTCGAATAGAGCCTTTTCTCTTATTTAAATACATCTAATGTTACTGTTAATCCAATCTACCATGTAATCTAAATTAGAGTTTAAATTTATTTAAATACATCTAATGTTACTGTTAATCTGAATATTTTTTAATGTATCTATATATTTTTGCTTTATTTAAATACATCTAATGTTACTGTTAATCGCAATATAGTGAAACGTGTTCGGATTATCCTTTCGATTTAAATACATCTAATGTTACTGTTAATCCTAAATGCTCTACGCAACATTGTATATTGTTGTTCATTTAAATACATCTAATGTTACTGTTAATCTAGTTATTTGATGTATTTTTTCTTCGTTGTACCAATTTAAATACATCTAATGTTACTGTTAATCTGCTTCTCGTACATATACAGAGTATTTTGGTTCAAATTTAAATACATCTAATGTTACTGTTAATCCTCAAGAAGAACCACCAAAAAAGAGGGAGTTCGGATTTAAATACATCTAATGTTACTGTTAATCAAAACGCTAACAATGATTTAGGTAACTCAAGTTTAAATTTAAATACATCTAATGTTACTGTTAATCTTTAACTTTATTAACATGATTATACCCCGCATATATTTAAATACATCTAATGTTACTGTTAATCAAATAAATTAAAAGATAAGGTAATGATTATAAATTGATTTAAATACATCTAATGTTACTGTTAATCATGCGTTTTTTAGAGCGTTCGACAATGAGAATTACAATTTAAATACATCTAATGTTACTGTTAATCATTAAAATTACAGATGGAGAAAATGCAAAAGAAAATATTTAAATACATCTAATGTTACTGTTAATCTTTAATAATTGGAATTGCATTTGGATTTCTATTAAAATTTAAATACATCTAATGTTACTGTTAATCTGTGCTTTGTCAAGAACAATTTTGTTACTGTTTGCTATTTAAATACATCTAATGTTACTGTTAATCCATATTAAATACACTCTATCTCCTAAAATTAACCATATTTAAATACATCTAATGTTACTGTTAATCGTTCTGTTATCGCTATTATACACGTTCATAATATTCATTTAAATACATCTAATGTTACTGTTAATCAATAACGATTTTAAAAGGAAGTTCAAGGAGGGATTAATTTAAATACATCTAATGTTACTGTTAATCTATTGCCAATTGCTGTTCAATTTTAGTTGCCATATATATTTAAATACATCTAATGTTACTGTTAATCAGTGATAGTAATTCAAACAGTTCTAGTGCTTCGGTATTTAAATACATCTAATGTTACTGTTAATCCTCAATATATGTGTTTAATAGTGTTTATTCTTCTGGATTTAAATACATCTAATGTTACTGTTAATCAGAAATTCAAAACCATGTAAATACAGAAGAAGTAACATTTAAATACATCTAATGTTACTGTTAATCTCTCTAGCTTGTACAACATAAGCTTCTTTTTCATCATTTAAATACATCTAATGTTACTGTTAATCAAAATCCTGTAAATCCAAAATTTTCCCTCATTAGCTATTTAAATACATCTAATGTTACTGTTAATCCTGTTTAGCGCCTGTGTGACATTCGTCAATTAAAACAATTTAAATACATCTAATGTTACTGTTAATCAAGATTAGATAAACTAGTAGGATGGCATATAGGAAATTTAAATACATCTAATGTTACTGTTAATCTTACGCCATATCTTAATAATAACAATAATAATTTATCATTTAAATACATCTAATGTTACTGTTAATCTTTAGAAATTCAGGACAAGATTAGAAAATTATCAAAATTTAAATACATCTAATGTTACTGTTAATCTTAGATTCAAGTACAGAGTTGGTAGATAGTTATTGATTTAAATACATCTAATGTTACTGTTAATCTTTGTTTTCTTTTCTTTGATTGTATTTTCTTTTTATTTAAATACATCTAATGTTACTGTTAATCGTTTTTAGAAAGATATAAAAAATAATTTTATGAGGATTTAAATACATCTAATGTTACTGTTAATCAATAGATATGATAATACAAAGAAAGTTTATAGCTTATTTAAATACATCTAATGTTACTGTTAATCCAATTGGGTTTATGCATTTCTTATCTTTCTAAAAAATTTAAATACATCTAATGTTACTGTTAATCTGGATGCTAATAGCATTAGAATTCATATTATAGAATTTAAATACATCTAATGTTACTGTTAATCCAATTGCAACAAGATTTACAGAAAAAGATGTAACATTTAAATACATCTAATGTTACTGTTAATCTTGGGATATAGATTTACCAAGTTTGAATTACAACAAATTTAAATACATCTAATGTTACTGTTAATCAAATTCAATCTACTAAAAGCAAATGATATATATAATTTAAATACATCTAATGTTACTGTTAATCTTTATTTCTTAAAACCTAACACAAAACCCACAACTATTTAAATACATCTAATGTTACTGTTAATCGTTAAGTCTCTGTGTTTAAATTCTTTAACTATTGTATTTAAATACATCTAATGTTACTGTTAATCATTGTTTTGATATATTTTAGTTAATTCATTATATTTATTTAAATACATCTAATGTTACTGTTAATCTCTTACTTGACTCCCATCATTTGCTAAAACTGTTATTTAAATACATCTAATGTTACTGTTAATCAACTAGCTAAAAGTATAGCAGATGCAAGTTTCTTATTTAAATACATCTAATGTTACTGTTAATCTAAAATATATAAAGATGGTTTTAATATATCAGATGAATTTAAATACATCTAATGTTACTGTTAATCGAAATAGTTAAAAGCGTACAAGCAACAGGGAAATAATTTAAATACATCTAATGTTACTGTTAATCTTTCAGTATTTTCAACTATTGTATTGTTTTCTTCATTTAAATACATCTAATGTTACTGTTAATCAATATTTTATTTAATCTATTAACATATTCTTCTTTTATTTAAATACATCTAATGTTACTGTTAATCGCCTTCCTACAGGTAGTGGCAAAACTATTTTGATGGCATTTAAATACATCTAATGTTACTGTTAATCTTAGAGGATATAAAACATAAATAAATAAAATCAAATTTAAATACATCTAATGTTACTGTTAATCCAAAATCTATTATATAATTAGTACATAAGATAAAATTTAAATACATCTAATGTTACTGTTAATCATAGCATAAAATAAATAATAAGAGGTGTAAAGATAATTTAAATACATCTAATGTTACTGTTAATCCTATCATTGTATGTCAAACTTGTTAATGTCGTATAATTTAAATACATCTAATGTTACTGTTAATCGAGGATGTTAACAGTTAAATAAAATTAAAGGGAGTATTTAAATACATCTAATGTTACTGTTAATCCATAAAGAAACATTAAATATTATAATAAAGTTAAGATTTAAATACATCTAATGTTACTGTTAATCATTCTCTTTATATTGAGTATATAACTGATTATTAGTATTTAAATACATCTAATGTTACTGTTAATCTTGGAAAGTTTTTAGATGTATACACCATTGAAAACAGATTTAAATACATCTAATGTTACTGTTAATCTTTTAGATTTGAAAGCTTCTAATAATTCATTGTTTATTTAAATACATCTAATGTTACTGTTAATCCCAACTGTATTTGATATTTTTTCTTTTCTTGCTACATTTAAATACATCTAATGTTACTGTTAATCCTTATTTATATTTATAAATATTGTTCTTTTGTTCTAATTTAAATACATCTAATGTTACTGTTAATC

>NZ_CP013353|1|1|554497-558382|CRT
AAAGTGTTGGCAATCTAGTTCCTGTTAATT	CGTTAATTCTCTATTAAAATCCTTTTTCTGCAACCA
ATCTAAATACATCTCATGTTACTGTTAATC	GTACTATCTAGTAATTCGAATAGAGCCTTTTCTCTT
ATTTAAATACATCTAATGTTACTGTTAATC	CAATCTACCATGTAATCTAAATTAGAGTTTAAATTT
ATTTAAATACATCTAATGTTACTGTTAATC	TGAATATTTTTTAATGTATCTATATATTTTTGCTTT
ATTTAAATACATCTAATGTTACTGTTAATC	GCAATATAGTGAAACGTGTTCGGATTATCCTTTCG
ATTTAAATACATCTAATGTTACTGTTAATC	CTAAATGCTCTACGCAACATTGTATATTGTTGTTC
ATTTAAATACATCTAATGTTACTGTTAATC	TAGTTATTTGATGTATTTTTTCTTCGTTGTACCA
ATTTAAATACATCTAATGTTACTGTTAATC	TGCTTCTCGTACATATACAGAGTATTTTGGTTCAA
ATTTAAATACATCTAATGTTACTGTTAATC	CTCAAGAAGAACCACCAAAAAAGAGGGAGTTCGG
ATTTAAATACATCTAATGTTACTGTTAATC	AAAACGCTAACAATGATTTAGGTAACTCAAGTTTAA
ATTTAAATACATCTAATGTTACTGTTAATC	TTTAACTTTATTAACATGATTATACCCCGCATAT
ATTTAAATACATCTAATGTTACTGTTAATC	AAATAAATTAAAAGATAAGGTAATGATTATAAATTG
ATTTAAATACATCTAATGTTACTGTTAATC	ATGCGTTTTTTAGAGCGTTCGACAATGAGAATTACA
ATTTAAATACATCTAATGTTACTGTTAATC	ATTAAAATTACAGATGGAGAAAATGCAAAAGAAAAT
ATTTAAATACATCTAATGTTACTGTTAATC	TTTAATAATTGGAATTGCATTTGGATTTCTATTAAA
ATTTAAATACATCTAATGTTACTGTTAATC	TGTGCTTTGTCAAGAACAATTTTGTTACTGTTTGCT
ATTTAAATACATCTAATGTTACTGTTAATC	CATATTAAATACACTCTATCTCCTAAAATTAACCAT
ATTTAAATACATCTAATGTTACTGTTAATC	GTTCTGTTATCGCTATTATACACGTTCATAATATTC
ATTTAAATACATCTAATGTTACTGTTAATC	AATAACGATTTTAAAAGGAAGTTCAAGGAGGGATTA
ATTTAAATACATCTAATGTTACTGTTAATC	TATTGCCAATTGCTGTTCAATTTTAGTTGCCATATAT
ATTTAAATACATCTAATGTTACTGTTAATC	AGTGATAGTAATTCAAACAGTTCTAGTGCTTCGGT
ATTTAAATACATCTAATGTTACTGTTAATC	CTCAATATATGTGTTTAATAGTGTTTATTCTTCTGG
ATTTAAATACATCTAATGTTACTGTTAATC	AGAAATTCAAAACCATGTAAATACAGAAGAAGTAAC
ATTTAAATACATCTAATGTTACTGTTAATC	TCTCTAGCTTGTACAACATAAGCTTCTTTTTCATC
ATTTAAATACATCTAATGTTACTGTTAATC	AAAATCCTGTAAATCCAAAATTTTCCCTCATTAGCT
ATTTAAATACATCTAATGTTACTGTTAATC	CTGTTTAGCGCCTGTGTGACATTCGTCAATTAAAACA
ATTTAAATACATCTAATGTTACTGTTAATC	AAGATTAGATAAACTAGTAGGATGGCATATAGGAA
ATTTAAATACATCTAATGTTACTGTTAATC	TTACGCCATATCTTAATAATAACAATAATAATTTATC
ATTTAAATACATCTAATGTTACTGTTAATC	TTTAGAAATTCAGGACAAGATTAGAAAATTATCAAA
ATTTAAATACATCTAATGTTACTGTTAATC	TTAGATTCAAGTACAGAGTTGGTAGATAGTTATTG
ATTTAAATACATCTAATGTTACTGTTAATC	TTTGTTTTCTTTTCTTTGATTGTATTTTCTTTTT
ATTTAAATACATCTAATGTTACTGTTAATC	GTTTTTAGAAAGATATAAAAAATAATTTTATGAGG
ATTTAAATACATCTAATGTTACTGTTAATC	AATAGATATGATAATACAAAGAAAGTTTATAGCTT
ATTTAAATACATCTAATGTTACTGTTAATC	CAATTGGGTTTATGCATTTCTTATCTTTCTAAAAA
ATTTAAATACATCTAATGTTACTGTTAATC	TGGATGCTAATAGCATTAGAATTCATATTATAGA
ATTTAAATACATCTAATGTTACTGTTAATC	CAATTGCAACAAGATTTACAGAAAAAGATGTAAC
ATTTAAATACATCTAATGTTACTGTTAATC	TTGGGATATAGATTTACCAAGTTTGAATTACAACAA
ATTTAAATACATCTAATGTTACTGTTAATC	AAATTCAATCTACTAAAAGCAAATGATATATATA
ATTTAAATACATCTAATGTTACTGTTAATC	TTTATTTCTTAAAACCTAACACAAAACCCACAACT
ATTTAAATACATCTAATGTTACTGTTAATC	GTTAAGTCTCTGTGTTTAAATTCTTTAACTATTGT
ATTTAAATACATCTAATGTTACTGTTAATC	ATTGTTTTGATATATTTTAGTTAATTCATTATATTT
ATTTAAATACATCTAATGTTACTGTTAATC	TCTTACTTGACTCCCATCATTTGCTAAAACTGTT
ATTTAAATACATCTAATGTTACTGTTAATC	AACTAGCTAAAAGTATAGCAGATGCAAGTTTCTT
ATTTAAATACATCTAATGTTACTGTTAATC	TAAAATATATAAAGATGGTTTTAATATATCAGATGA
ATTTAAATACATCTAATGTTACTGTTAATC	GAAATAGTTAAAAGCGTACAAGCAACAGGGAAATA
ATTTAAATACATCTAATGTTACTGTTAATC	TTTCAGTATTTTCAACTATTGTATTGTTTTCTTC
ATTTAAATACATCTAATGTTACTGTTAATC	AATATTTTATTTAATCTATTAACATATTCTTCTTTT
ATTTAAATACATCTAATGTTACTGTTAATC	GCCTTCCTACAGGTAGTGGCAAAACTATTTTGATGGC
ATTTAAATACATCTAATGTTACTGTTAATC	TTAGAGGATATAAAACATAAATAAATAAAATCAA
ATTTAAATACATCTAATGTTACTGTTAATC	CAAAATCTATTATATAATTAGTACATAAGATAAA
ATTTAAATACATCTAATGTTACTGTTAATC	ATAGCATAAAATAAATAATAAGAGGTGTAAAGATA
ATTTAAATACATCTAATGTTACTGTTAATC	CTATCATTGTATGTCAAACTTGTTAATGTCGTATA
ATTTAAATACATCTAATGTTACTGTTAATC	GAGGATGTTAACAGTTAAATAAAATTAAAGGGAGT
ATTTAAATACATCTAATGTTACTGTTAATC	CATAAAGAAACATTAAATATTATAATAAAGTTAAG
ATTTAAATACATCTAATGTTACTGTTAATC	ATTCTCTTTATATTGAGTATATAACTGATTATTAGT
ATTTAAATACATCTAATGTTACTGTTAATC	TTGGAAAGTTTTTAGATGTATACACCATTGAAAACAG
ATTTAAATACATCTAATGTTACTGTTAATC	TTTTAGATTTGAAAGCTTCTAATAATTCATTGTTT
ATTTAAATACATCTAATGTTACTGTTAATC	CCAACTGTATTTGATATTTTTTCTTTTCTTGCTAC
ATTTAAATACATCTAATGTTACTGTTAATC	CTTATTTATATTTATAAATATTGTTCTTTTGTTCTA
ATTTAAATACATCTAATGTTACTGTTAATC

>NZ_CP013353|1|1|554563-558382|PILER-CR
ATCTAAATACATCTCATGTTACTGTTAATC	GTACTATCTAGTAATTCGAATAGAGCCTTTTCTCTT
ATTTAAATACATCTAATGTTACTGTTAATC	CAATCTACCATGTAATCTAAATTAGAGTTTAAATTT
ATTTAAATACATCTAATGTTACTGTTAATC	TGAATATTTTTTAATGTATCTATATATTTTTGCTTT
ATTTAAATACATCTAATGTTACTGTTAATC	GCAATATAGTGAAACGTGTTCGGATTATCCTTTCG
ATTTAAATACATCTAATGTTACTGTTAATC	CTAAATGCTCTACGCAACATTGTATATTGTTGTTC
ATTTAAATACATCTAATGTTACTGTTAATC	TAGTTATTTGATGTATTTTTTCTTCGTTGTACCA
ATTTAAATACATCTAATGTTACTGTTAATC	TGCTTCTCGTACATATACAGAGTATTTTGGTTCAA
ATTTAAATACATCTAATGTTACTGTTAATC	CTCAAGAAGAACCACCAAAAAAGAGGGAGTTCGG
ATTTAAATACATCTAATGTTACTGTTAATC	AAAACGCTAACAATGATTTAGGTAACTCAAGTTTAA
ATTTAAATACATCTAATGTTACTGTTAATC	TTTAACTTTATTAACATGATTATACCCCGCATAT
ATTTAAATACATCTAATGTTACTGTTAATC	AAATAAATTAAAAGATAAGGTAATGATTATAAATTG
ATTTAAATACATCTAATGTTACTGTTAATC	ATGCGTTTTTTAGAGCGTTCGACAATGAGAATTACA
ATTTAAATACATCTAATGTTACTGTTAATC	ATTAAAATTACAGATGGAGAAAATGCAAAAGAAAAT
ATTTAAATACATCTAATGTTACTGTTAATC	TTTAATAATTGGAATTGCATTTGGATTTCTATTAAA
ATTTAAATACATCTAATGTTACTGTTAATC	TGTGCTTTGTCAAGAACAATTTTGTTACTGTTTGCT
ATTTAAATACATCTAATGTTACTGTTAATC	CATATTAAATACACTCTATCTCCTAAAATTAACCAT
ATTTAAATACATCTAATGTTACTGTTAATC	GTTCTGTTATCGCTATTATACACGTTCATAATATTC
ATTTAAATACATCTAATGTTACTGTTAATC	AATAACGATTTTAAAAGGAAGTTCAAGGAGGGATTA
ATTTAAATACATCTAATGTTACTGTTAATC	TATTGCCAATTGCTGTTCAATTTTAGTTGCCATATAT
ATTTAAATACATCTAATGTTACTGTTAATC	AGTGATAGTAATTCAAACAGTTCTAGTGCTTCGGT
ATTTAAATACATCTAATGTTACTGTTAATC	CTCAATATATGTGTTTAATAGTGTTTATTCTTCTGG
ATTTAAATACATCTAATGTTACTGTTAATC	AGAAATTCAAAACCATGTAAATACAGAAGAAGTAAC
ATTTAAATACATCTAATGTTACTGTTAATC	TCTCTAGCTTGTACAACATAAGCTTCTTTTTCATC
ATTTAAATACATCTAATGTTACTGTTAATC	AAAATCCTGTAAATCCAAAATTTTCCCTCATTAGCT
ATTTAAATACATCTAATGTTACTGTTAATC	CTGTTTAGCGCCTGTGTGACATTCGTCAATTAAAACA
ATTTAAATACATCTAATGTTACTGTTAATC	AAGATTAGATAAACTAGTAGGATGGCATATAGGAA
ATTTAAATACATCTAATGTTACTGTTAATC	TTACGCCATATCTTAATAATAACAATAATAATTTATC
ATTTAAATACATCTAATGTTACTGTTAATC	TTTAGAAATTCAGGACAAGATTAGAAAATTATCAAA
ATTTAAATACATCTAATGTTACTGTTAATC	TTAGATTCAAGTACAGAGTTGGTAGATAGTTATTG
ATTTAAATACATCTAATGTTACTGTTAATC	TTTGTTTTCTTTTCTTTGATTGTATTTTCTTTTT
ATTTAAATACATCTAATGTTACTGTTAATC	GTTTTTAGAAAGATATAAAAAATAATTTTATGAGG
ATTTAAATACATCTAATGTTACTGTTAATC	AATAGATATGATAATACAAAGAAAGTTTATAGCTT
ATTTAAATACATCTAATGTTACTGTTAATC	CAATTGGGTTTATGCATTTCTTATCTTTCTAAAAA
ATTTAAATACATCTAATGTTACTGTTAATC	TGGATGCTAATAGCATTAGAATTCATATTATAGA
ATTTAAATACATCTAATGTTACTGTTAATC	CAATTGCAACAAGATTTACAGAAAAAGATGTAAC
ATTTAAATACATCTAATGTTACTGTTAATC	TTGGGATATAGATTTACCAAGTTTGAATTACAACAA
ATTTAAATACATCTAATGTTACTGTTAATC	AAATTCAATCTACTAAAAGCAAATGATATATATA
ATTTAAATACATCTAATGTTACTGTTAATC	TTTATTTCTTAAAACCTAACACAAAACCCACAACT
ATTTAAATACATCTAATGTTACTGTTAATC	GTTAAGTCTCTGTGTTTAAATTCTTTAACTATTGT
ATTTAAATACATCTAATGTTACTGTTAATC	ATTGTTTTGATATATTTTAGTTAATTCATTATATTT
ATTTAAATACATCTAATGTTACTGTTAATC	TCTTACTTGACTCCCATCATTTGCTAAAACTGTT
ATTTAAATACATCTAATGTTACTGTTAATC	AACTAGCTAAAAGTATAGCAGATGCAAGTTTCTT
ATTTAAATACATCTAATGTTACTGTTAATC	TAAAATATATAAAGATGGTTTTAATATATCAGATGA
ATTTAAATACATCTAATGTTACTGTTAATC	GAAATAGTTAAAAGCGTACAAGCAACAGGGAAATA
ATTTAAATACATCTAATGTTACTGTTAATC	TTTCAGTATTTTCAACTATTGTATTGTTTTCTTC
ATTTAAATACATCTAATGTTACTGTTAATC	AATATTTTATTTAATCTATTAACATATTCTTCTTTT
ATTTAAATACATCTAATGTTACTGTTAATC	GCCTTCCTACAGGTAGTGGCAAAACTATTTTGATGGC
ATTTAAATACATCTAATGTTACTGTTAATC	TTAGAGGATATAAAACATAAATAAATAAAATCAA
ATTTAAATACATCTAATGTTACTGTTAATC	CAAAATCTATTATATAATTAGTACATAAGATAAA
ATTTAAATACATCTAATGTTACTGTTAATC	ATAGCATAAAATAAATAATAAGAGGTGTAAAGATA
ATTTAAATACATCTAATGTTACTGTTAATC	CTATCATTGTATGTCAAACTTGTTAATGTCGTATA
ATTTAAATACATCTAATGTTACTGTTAATC	GAGGATGTTAACAGTTAAATAAAATTAAAGGGAGT
ATTTAAATACATCTAATGTTACTGTTAATC	CATAAAGAAACATTAAATATTATAATAAAGTTAAG
ATTTAAATACATCTAATGTTACTGTTAATC	ATTCTCTTTATATTGAGTATATAACTGATTATTAGT
ATTTAAATACATCTAATGTTACTGTTAATC	TTGGAAAGTTTTTAGATGTATACACCATTGAAAACAG
ATTTAAATACATCTAATGTTACTGTTAATC	TTTTAGATTTGAAAGCTTCTAATAATTCATTGTTT
ATTTAAATACATCTAATGTTACTGTTAATC	CCAACTGTATTTGATATTTTTTCTTTTCTTGCTAC
ATTTAAATACATCTAATGTTACTGTTAATC	CTTATTTATATTTATAAATATTGTTCTTTTGTTCTA
ATTTAAATACATCTAATGTTACTGTTAATC

>NZ_CP013353|1|1|554563-558382|CRISPRCasFinder
ATCTAAATACATCTCATGTTACTGTTAATC	GTACTATCTAGTAATTCGAATAGAGCCTTTTCTCTT
ATTTAAATACATCTAATGTTACTGTTAATC	CAATCTACCATGTAATCTAAATTAGAGTTTAAATTT
ATTTAAATACATCTAATGTTACTGTTAATC	TGAATATTTTTTAATGTATCTATATATTTTTGCTTT
ATTTAAATACATCTAATGTTACTGTTAATC	GCAATATAGTGAAACGTGTTCGGATTATCCTTTCG
ATTTAAATACATCTAATGTTACTGTTAATC	CTAAATGCTCTACGCAACATTGTATATTGTTGTTC
ATTTAAATACATCTAATGTTACTGTTAATC	TAGTTATTTGATGTATTTTTTCTTCGTTGTACCA
ATTTAAATACATCTAATGTTACTGTTAATC	TGCTTCTCGTACATATACAGAGTATTTTGGTTCAA
ATTTAAATACATCTAATGTTACTGTTAATC	CTCAAGAAGAACCACCAAAAAAGAGGGAGTTCGG
ATTTAAATACATCTAATGTTACTGTTAATC	AAAACGCTAACAATGATTTAGGTAACTCAAGTTTAA
ATTTAAATACATCTAATGTTACTGTTAATC	TTTAACTTTATTAACATGATTATACCCCGCATAT
ATTTAAATACATCTAATGTTACTGTTAATC	AAATAAATTAAAAGATAAGGTAATGATTATAAATTG
ATTTAAATACATCTAATGTTACTGTTAATC	ATGCGTTTTTTAGAGCGTTCGACAATGAGAATTACA
ATTTAAATACATCTAATGTTACTGTTAATC	ATTAAAATTACAGATGGAGAAAATGCAAAAGAAAAT
ATTTAAATACATCTAATGTTACTGTTAATC	TTTAATAATTGGAATTGCATTTGGATTTCTATTAAA
ATTTAAATACATCTAATGTTACTGTTAATC	TGTGCTTTGTCAAGAACAATTTTGTTACTGTTTGCT
ATTTAAATACATCTAATGTTACTGTTAATC	CATATTAAATACACTCTATCTCCTAAAATTAACCAT
ATTTAAATACATCTAATGTTACTGTTAATC	GTTCTGTTATCGCTATTATACACGTTCATAATATTC
ATTTAAATACATCTAATGTTACTGTTAATC	AATAACGATTTTAAAAGGAAGTTCAAGGAGGGATTA
ATTTAAATACATCTAATGTTACTGTTAATC	TATTGCCAATTGCTGTTCAATTTTAGTTGCCATATAT
ATTTAAATACATCTAATGTTACTGTTAATC	AGTGATAGTAATTCAAACAGTTCTAGTGCTTCGGT
ATTTAAATACATCTAATGTTACTGTTAATC	CTCAATATATGTGTTTAATAGTGTTTATTCTTCTGG
ATTTAAATACATCTAATGTTACTGTTAATC	AGAAATTCAAAACCATGTAAATACAGAAGAAGTAAC
ATTTAAATACATCTAATGTTACTGTTAATC	TCTCTAGCTTGTACAACATAAGCTTCTTTTTCATC
ATTTAAATACATCTAATGTTACTGTTAATC	AAAATCCTGTAAATCCAAAATTTTCCCTCATTAGCT
ATTTAAATACATCTAATGTTACTGTTAATC	CTGTTTAGCGCCTGTGTGACATTCGTCAATTAAAACA
ATTTAAATACATCTAATGTTACTGTTAATC	AAGATTAGATAAACTAGTAGGATGGCATATAGGAA
ATTTAAATACATCTAATGTTACTGTTAATC	TTACGCCATATCTTAATAATAACAATAATAATTTATC
ATTTAAATACATCTAATGTTACTGTTAATC	TTTAGAAATTCAGGACAAGATTAGAAAATTATCAAA
ATTTAAATACATCTAATGTTACTGTTAATC	TTAGATTCAAGTACAGAGTTGGTAGATAGTTATTG
ATTTAAATACATCTAATGTTACTGTTAATC	TTTGTTTTCTTTTCTTTGATTGTATTTTCTTTTT
ATTTAAATACATCTAATGTTACTGTTAATC	GTTTTTAGAAAGATATAAAAAATAATTTTATGAGG
ATTTAAATACATCTAATGTTACTGTTAATC	AATAGATATGATAATACAAAGAAAGTTTATAGCTT
ATTTAAATACATCTAATGTTACTGTTAATC	CAATTGGGTTTATGCATTTCTTATCTTTCTAAAAA
ATTTAAATACATCTAATGTTACTGTTAATC	TGGATGCTAATAGCATTAGAATTCATATTATAGA
ATTTAAATACATCTAATGTTACTGTTAATC	CAATTGCAACAAGATTTACAGAAAAAGATGTAAC
ATTTAAATACATCTAATGTTACTGTTAATC	TTGGGATATAGATTTACCAAGTTTGAATTACAACAA
ATTTAAATACATCTAATGTTACTGTTAATC	AAATTCAATCTACTAAAAGCAAATGATATATATA
ATTTAAATACATCTAATGTTACTGTTAATC	TTTATTTCTTAAAACCTAACACAAAACCCACAACT
ATTTAAATACATCTAATGTTACTGTTAATC	GTTAAGTCTCTGTGTTTAAATTCTTTAACTATTGT
ATTTAAATACATCTAATGTTACTGTTAATC	ATTGTTTTGATATATTTTAGTTAATTCATTATATTT
ATTTAAATACATCTAATGTTACTGTTAATC	TCTTACTTGACTCCCATCATTTGCTAAAACTGTT
ATTTAAATACATCTAATGTTACTGTTAATC	AACTAGCTAAAAGTATAGCAGATGCAAGTTTCTT
ATTTAAATACATCTAATGTTACTGTTAATC	TAAAATATATAAAGATGGTTTTAATATATCAGATGA
ATTTAAATACATCTAATGTTACTGTTAATC	GAAATAGTTAAAAGCGTACAAGCAACAGGGAAATA
ATTTAAATACATCTAATGTTACTGTTAATC	TTTCAGTATTTTCAACTATTGTATTGTTTTCTTC
ATTTAAATACATCTAATGTTACTGTTAATC	AATATTTTATTTAATCTATTAACATATTCTTCTTTT
ATTTAAATACATCTAATGTTACTGTTAATC	GCCTTCCTACAGGTAGTGGCAAAACTATTTTGATGGC
ATTTAAATACATCTAATGTTACTGTTAATC	TTAGAGGATATAAAACATAAATAAATAAAATCAA
ATTTAAATACATCTAATGTTACTGTTAATC	CAAAATCTATTATATAATTAGTACATAAGATAAA
ATTTAAATACATCTAATGTTACTGTTAATC	ATAGCATAAAATAAATAATAAGAGGTGTAAAGATA
ATTTAAATACATCTAATGTTACTGTTAATC	CTATCATTGTATGTCAAACTTGTTAATGTCGTATA
ATTTAAATACATCTAATGTTACTGTTAATC	GAGGATGTTAACAGTTAAATAAAATTAAAGGGAGT
ATTTAAATACATCTAATGTTACTGTTAATC	CATAAAGAAACATTAAATATTATAATAAAGTTAAG
ATTTAAATACATCTAATGTTACTGTTAATC	ATTCTCTTTATATTGAGTATATAACTGATTATTAGT
ATTTAAATACATCTAATGTTACTGTTAATC	TTGGAAAGTTTTTAGATGTATACACCATTGAAAACAG
ATTTAAATACATCTAATGTTACTGTTAATC	TTTTAGATTTGAAAGCTTCTAATAATTCATTGTTT
ATTTAAATACATCTAATGTTACTGTTAATC	CCAACTGTATTTGATATTTTTTCTTTTCTTGCTAC
ATTTAAATACATCTAATGTTACTGTTAATC	CTTATTTATATTTATAAATATTGTTCTTTTGTTCTA
ATTTAAATACATCTAATGTTACTGTTAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013353.1\|WP_003413689.1\|548677_548917_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013353.1\|WP_058372106.1\|559892_560387_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP013353.1\|WP_027635324.1\|552832_553156_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013353.1\|WP_043853731.1\|545975_547169_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NZ_CP013353.1\|WP_002581267.1\|545173_545512_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013353.1\|WP_058372101.1\|549123_549999_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP013353.1\|WP_058372111.1\|566625_567318_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP013353.1\|WP_058372102.1\|550375_552817_-\|glutathionylspermidine-synthase	unknown	unknown	gnl\|CDD\|367631
NZ_CP013353.1\|WP_002581258.1\|550143_550353_-\|DUF350-domain-containing-protein	unknown	unknown	gnl\|CDD\|377187
NZ_CP013353.1\|WP_058372109.1\|563904_564855_-\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP013353.1\|WP_125390909.1\|567651_568676_+\|IS1595-family-transposase	unknown	unknown	gnl\|CDD\|226202
NZ_CP013353.1\|WP_125390914.1\|567341_567542_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369649
NZ_CP013353.1\|WP_058372104.1\|558568_558859_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP013353.1\|WP_058372103.1\|553148_553781_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013353.1\|WP_058372105.1\|558875_559874_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NZ_CP013353.1\|WP_058372107.1\|560437_563053_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP013353.1\|WP_058372110.1\|564856_566611_-\|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	gnl\|CDD\|188234
NZ_CP013353.1\|WP_058372108.1\|563103_563901_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NZ_CP013353.1\|WP_002581254.1\|553786_554170_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013353.1\|WP_003432768.1\|547412_548594_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|224090

Protein	Function_ID	Function_description	E-value
NZ_CP013353.1\|WP_002581258.1\|550143_550353_-\|DUF350-domain-containing-protein	gnl\|CDD\|377187	pfam03994, DUF350, Domain of Unknown Function (DUF350). This domain occurs in a small set of of bacterial proteins. It has two transmembrane regions, and often occurs as tandem repeats. The are no conserved catalytic residues.	5.07405e-06
NZ_CP013353.1\|WP_058372106.1\|559892_560387_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.06387e-51
NZ_CP013353.1\|WP_058372107.1\|560437_563053_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	3.55639e-31
NZ_CP013353.1\|WP_043853731.1\|545975_547169_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.74283e-70
NZ_CP013353.1\|WP_058372105.1\|558875_559874_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.12624e-156
NZ_CP013353.1\|WP_125390914.1\|567341_567542_-\|hypothetical-protein	gnl\|CDD\|369649	pfam08011, PDDEXK_9, PD-(D/E)XK nuclease superfamily. This family contains many hypothetical bacterial proteins. It has been identified as a member of the PD-(D/E)XK nuclease superfamily through transitive meta profile searches. DUF1703 has the predicted secondary structure pattern of the restriction endonuclease-like fold core and contains an additional beta-strand at the C-terminus.	2.27855e-05
NZ_CP013353.1\|WP_058372102.1\|550375_552817_-\|glutathionylspermidine-synthase	gnl\|CDD\|367631	pfam03738, GSP_synth, Glutathionylspermidine synthase preATP-grasp. This region contains the Glutathionylspermidine synthase enzymatic activity EC:6.3.1.8. This is the C-terminal region in bi-enzymes. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design. This region, the pre-ATP grasp region, probably carries the substrate-binding site.	9.78736e-24
NZ_CP013353.1\|WP_058372101.1\|549123_549999_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.92706e-38
NZ_CP013353.1\|WP_058372109.1\|563904_564855_-\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	6.60611e-52
NZ_CP013353.1\|WP_058372104.1\|558568_558859_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.6994e-23
NZ_CP013353.1\|WP_058372111.1\|566625_567318_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	4.8728e-12
NZ_CP013353.1\|WP_125390909.1\|567651_568676_+\|IS1595-family-transposase	gnl\|CDD\|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.49903e-27
NZ_CP013353.1\|WP_058372110.1\|564856_566611_-\|hypothetical-protein	gnl\|CDD\|188234	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI. This domain is found in the C-terminal 2/3 of a family of CRISPR associated proteins of the Hmari subtype. Except for the two sequences from halophilic archaea this domain contains a pair of CXXC motifs.	1.44361e-16
NZ_CP013353.1\|WP_058372108.1\|563103_563901_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	3.59643e-47
NZ_CP013353.1\|WP_003432768.1\|547412_548594_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|224090	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism].	1.12681e-164

>NZ_CP013353.1|WP_002581254.1|553786_554170_-|hypothetical-protein
MEIFIYKTYEQWYKDKPYEVLEGSICQMENGLIAVDTYIDNKNYRQVFSPTGNFAVVYKLEYGFFGVLKEINIYHNSESWRKSKPEISFSGEVCERECSDNYFVFINEDGYKQYLSLNGIYSVVYER
>NZ_CP013353.1|WP_058372103.1|553148_553781_-|hypothetical-protein
MYLKDIDLRELYRKWKKNLKQFRGFYRSTPFVTLQDYDDFKLKSCEQGKYDELAETILLQINEGTLCIVDLPFDVIIDIALVFNNKYRIKPVLNINMFFNEHGIIGTEDNISKLINNSLMLEDINTDKFIMLYDYDRYDDSIDVKKIYDKLNNQYGIGDDDFPHASFLKRFGYGKVSVFTKKRLKEDMKIQLDYLQKEIEVKIEEVECFE
>NZ_CP013353.1|WP_027635324.1|552832_553156_-|hypothetical-protein
MSDMKKMLKKNRKKALSLAVAAVFTAGLSSNFAGCTTNQKNYNQEDDDDDDDSGYGGSSGYHGNTFWHSSSSGSSNEKVNSSSGNKGKSGITSSSGYSGGKGGSASS
>NZ_CP013353.1|WP_058372102.1|550375_552817_-|glutathionylspermidine-synthase
MKNRIRYTEDALFDNYMVSAYGEEYVHSQIPFYIEKDIYNRIVYYSETINNLALRVVENINGSHKKLLDYFEEFPLKERIFNLKCNLSPMYWTRYDTFIDKRKNIKFAEFNYDKPCGQKEIHLAGKLDFEENVNKNFVDDLIDELVAITKEYSGIDKVDVGFLMDPCHYEELHHSYYFKHILKDTNINIVQVGPQNLSVINGEVYAYSKIKLKIILRLFPTEFFHEINNIEDILDSFDKGKVLIINDPRIIAVQSKGFFSYLWDLIRNDSSLISDEEKEVIRRSVPYTEIFNEEIIQKVIKDKNRIVLKSSLGRYSQEVYLGKTYTDEEWNNLIGNVADNHKIHIVQELIDIRQDYTYVPDLYNTNIPVAAYGNFGTYIMKDKVTGLLVRWGKTLLTNDYETWMNPIGISEFPIKIETLDIGNKNEAEVYEKLCEYMAFNYKFTGEYTNENKAVSNDILLMSSSLYREIKYAGEKFCSIVENLYIKIRDNLNILGELFGIPEELYKIIENDTVSSLCALGRIDFCIDNEGRLKMLEFNSETPAGIVESIGINKFIQDEFLINYRNPNEHLREKISLQLRDIIGQIEKKKYVKNIAVVTCWYDEDIYNTNIIGDIMKEFKEYNIVFGNVYDLKVNENEIYLYNIQIDAVYRYYPLDWLYYDEEMNYLLEPLRNGDYLINPGHTLVMQSKVLFAFMYEVIGKGILSEDDENFINQYIPYTSLEKDKKLSKDYVIKPYFGREGQDIRMNYEEHDENLNEEIIFQDRVNIRPLRMDSFKFPIIGAYITGSELAGIYTRMGDIVTDKNAVYISTYIQD
>NZ_CP013353.1|WP_002581258.1|550143_550353_-|DUF350-domain-containing-protein
MNSFTLDIMLSIVFGIIGIILLITGYVVFDKVLKKIDFDEELRNKNTAVAIVIAGFMIAIGIIISGVVA
>NZ_CP013353.1|WP_058372101.1|549123_549999_+|LysR-family-transcriptional-regulator
MDIRVLRYFLTIAREESISGAADFLHITQPTLSRQIKDLEDELGTQLLIRGSRNITLTESGLLLRSRAEEIISLVDKTEAEMNISNEIISGDIYIGSGETEAIRSIAKIAKDLQKIHPNIKYNLFSGNADDVKDRLDKGLLDFGIIIEPADIKKYDFLRLPTTDTWGVLMRKDNPLSIKEYIEPKDLWNLPLICSAQSTIFDNLSGWIGKNMDELNIVATYNLLYNASIMVDEGLGCALCLDRLINTSGESNLCFKPLYPDLNVHLDIIWKKYHVFSRASEIFLKKIREQL
>NZ_CP013353.1|WP_003413689.1|548677_548917_-|hypothetical-protein
MSKEQNKDNSLIQNLEDAGCSCEEIRDYLKYDKEGLDGNKICLLIKQRKYLLDCIHETQKQLDCLDYLLYKVKGCKCKK
>NZ_CP013353.1|WP_003432768.1|547412_548594_-|pyridoxal-phosphate-dependent-aminotransferase
MKYDFNVVRDRNNTNSLKWDISENELPMWVADMDFQTAPAIIEALENKVKEGIFGYSVISEKWNESIVNWWSRRHNFTMKKEWLIFCSGIVPAVTCAVKRITNIGDNVLVQTPVYNIFFNSIENHGRHVLESKLKYDGGQYKIDFEDLEQKLAHPLTTMMILCNPHNPAGRIWSVKELRKIGELCKKHHVVILSDEIHCDLTALGKEYVPFASVSEECEQNSITCLSATKTFNIAGLQTAIVSIPNEEIRNKMKRGLNSDEVAEPNTFAIDAVVAAFSYGEEWLDELREYIEENKKIVSNYLQKELPQIKMVCSDATYLLWLDCTDIIGDTAQLCSFIRKETGLYLSSGSQYRGNGNRFMRMNIACPKSILDDGLLRLNQGVRAYEQWVVKQC
>NZ_CP013353.1|WP_043853731.1|545975_547169_-|MFS-transporter
MNRKENSKGILLILTLGVFSIINTEMGVVGILPLLSQYFGVTISKAGLFVSMFALAVAVSGPIMPLIFSGINRKKVMIMVLSIFVVSSLVQALTTNFYVAIIARIIPALFHPVYVSLAFSVAGKTVSEKEAPKAAAKVMMGVSAGMVLGVPIVSFIANTISLQSAMIFFAVVNGIVLIATCIFVPSISVTERMSYGDQLKVLKLPELWLAIMAIIFLNGSIFGVYSYFADYMTGVTGFSESSVSILLFVYGLANIVGNMIAGKGLSEKPLRLVRIFPVLLAVAYICLFILGEFKLSTAIITLLWGILAGIAGNINQYWITSVIPKAPDFGNGLFLAATNLGTTIGTTVCGAFIANLGSNYMLVGGMCLLIISMIFILIRTKSIEKVKKVNAIQLIRE
>NZ_CP013353.1|WP_002581267.1|545173_545512_+|hypothetical-protein
MRKRFFILSTLLIVFTLLFTSKSYAATPLYPVNNIYTEGIYKIPKSVSDSYNIQYKLVNHNKKCTIIILDEHNNTIFKSSECRDQCDAGIITNKDTLIIITEDQVSLYFNKV
>NZ_CP013353.1|WP_058372104.1|558568_558859_-|CRISPR-associated-endonuclease-Cas2
MSKITNYNYAFVFYDVNEKRVNKVFKVCKKYLSHFQNSVFRGEMSPSKLIRFKTDLNKVVDKNEDFICIIKLMNDNVFGEEVIGISDKQNGEDLII
>NZ_CP013353.1|WP_058372105.1|558875_559874_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MGSTRYISSMGELTRKDNSLCFRKDGKNVYIPIENTKEIYCLNEISINTKLLDFLSQNHVVVHFFNYYEGYSGTFYPRNQYNSGKLIVKQVEKYSTERMVIAKAIVRGIGINIREVLYHYYKHNKTEVKGTIDWIKNAFFKRVEAANDVKELMSVEGEVWQRFYSEFKNFLPEDFIMNKRVKRPPDNPINALISFGNTLLYTKTISAIYRTHLDQRISFLHEPSEGRFSLSLDISEVFKPVIVYKTIFELVNNKKLQVNKHFDKKVNYCLLNEEGRNIFISAFEERMESVISHPKLKRKVSLRTAIKLDCYKLIKYIMEDQEFIPFSLKDGM
>NZ_CP013353.1|WP_058372106.1|559892_560387_-|CRISPR-associated-protein-Cas4
MRVNGTLINYYFHCKRQCYLHGNRLNLEDNSEIVKIGKAIHEDKATKSNNAEIEIDNIKLDKLTSEYLTEIKKSDADVEAGKWQLLYYLKVLKSKGIIRKGRLECIEKNKSDKKIIYVDLDDESEKELDKYINEIEKLIEDDKIPEVLNKSTCKKCAYYEYCYI
>NZ_CP013353.1|WP_058372107.1|560437_563053_-|CRISPR-associated-helicase/endonuclease-Cas3
MYFDDNMIVDIQKIIGCKHEFYAHLNNDNSKSSGEIRKETLKEHTDLCINYFKKIVNDKRIENIFLNFEDNYFKDMSDTGRKIFRKLLINTIAFHDIGKINPNFQNAKMDNLLGKYAQTFPGIGSEHSLISSVLYIDYFIEEILSLSNEDGRLILMSIMMFNAYAISRHHSDLDNFNEFLSKFNEGEKAIEIINTFKENDMNNIYRKNFVLSENRIVKVCGYIKKKYFNEADDEKSIYLYTYERLIYSLLVCCDFYATSEFMNKTIISDFGEIRNIDEFYKIYKDTDVYKSIREYEDTKYEKSKDLSNEKNINVLRTEMFLDAERELLKNIDENVYFLEAPTGSGKSNTAFNLSFKLFEEDKNLKKIYYVYPFNTLVEQNLNILNKTFGNNKAAMDNIAVINSIYPIKEDNKYVEYDSGKNGDEKDFSYKYYEKALLNRQFLNYPVILTTHVSLFSTMFGENKEDAFAFHQLANSVIVLDEIQSYKNTIWTEIISFLKGFAKILNIKVIIMSATLPDLNMLAINTNSVCSLIKDREKYFSNPQFKDRVIVNYDLIDSGNPLQDLYEHVLKNSSRNKKILIEFIKKQSAYEFFKMLNEEELDATVLLMTGDDNSIERDRIIKELSSNESEENGVILVATQVIEAGVDIDMDIGYKDISKLDSDEQFMGRINRSCRKNGEVYFFNLDKTDKIYKDDFRVNKDFSLLDDKMREILKNKKFSEYYKMVLEMIKKSNNLLNDDNIHKFFKENVWMLNFKEVSQRMKLIEDNNWNMSVYLARNIDEDNIHLNGIEVWNEYKKLLHDSKMNYSEKQVKLSNIRSKMSYFIYEIKKNFDLPYNDKIGELYYIENGEKYFENGKLDKEKFSNEVGMFIEL
>NZ_CP013353.1|WP_058372108.1|563103_563901_-|type-I-B-CRISPR-associated-protein-Cas5
MRILKFTLRGKSGFFKKPDVNSNLYFTYGNIHKVALTGLLGAVIGYGGYNSMNIKNIFNKKKKEAVQDFPEFYERLKDLKISIVPNGEKGFISKKVQIFNNSVGYGNEDKYEKPCNLVVKEQWLENPSWDIYIIIDDEESEKIEEAITKHKTVYTPYLGKNDHIADITDVEVINESEIAVDKEINKLDCLYLKDDFQIDNVEDDFGDFSDDDIEDYFKYEEKLPYELEKNTNMYITKSFICTNMKIKKCSDIDAYRIKEKNIVFY
>NZ_CP013353.1|WP_058372109.1|563904_564855_-|type-I-CRISPR-associated-protein-Cas7
MDKRVYGVLGISSIMANWNADFTGYPKTTSDGTTFGSDKALKYPMKKMWDNQGEKVLYIKSMKLSEGKKGEVQLVPRALKERYEQIFDVKNLKECKDAKEVLTNLFNAIDVKNFGATFAEEGNNISITGAVQIGQGFNKYEDTNPEEQQILSPFRDGSKDNAKPDSEEAKNSTLGTKIVSNEAHYFYPFTINPAAYKEFNELGVTNGYTEEDYGKFKKASLVSATSFATNSKVGCENEFALFIETESDLYLPNLSEYIEFVKGDEKNTIKINCSELINSVSNKIKNVEIYFNPYKTVLESDIKGAKVFNIFTQEEV
>NZ_CP013353.1|WP_058372110.1|564856_566611_-|hypothetical-protein
MLKECLEVFKSDLENNRQQIIDAYVPAEGTYVIVSPKGDSFEIKDYFDIKYDKKDKKLLGKTNINFNKICNYDYNSILDIQKAIDRKKIIQSNNYLSFIIKQESLKNGKLTEECIDNYYSILSNFEKKYKNDKKSLTLYKLVEGEIGKVNIELLEKIKLWIKNNIFNLNIEMSGKNYLKIFFDYTLQNYINEGKRHLIPNIYNKNNYNIELDNEIYGLPNNNMALNSKKPYLENKTRKNTLPYLIDAEEVQLQKEFFDYLMNEVSLGKTNVFIDLDKKIIDVKENGKLPENDFNGLFLKLKKGKEVEIHYYDAITSYKSILKKELDIKNILELDLDSKLNQKYVEYYNNLKKKEDVQKILDEVFFNRYLIKNYFTDPGNISTQDNILINSLLTARNSIFKWIYNGIDKNSDNGIATILDKVSLNLIKGSINDGDITKAGHQFNLRWSLKEYFKGGKKMPEILKDLTTLRTKINAEKTDRFENDEEYYFSIGQLVYYFLSKSKSKKKMQSFINTFISIQKDIYVKEKLRSLYKSYNYDMEINSNRIRNLYAMIELYKPYSKIDKDMVIAGFLHSSLIYEKSEGDK
>NZ_CP013353.1|WP_058372111.1|566625_567318_-|CRISPR-associated-endoribonuclease-Cas6
MKVYEIKLKVFILKNVVIDNIQAVISEFIDSALAKNEQLLQMHNENKFKFYCFGGFYPLEDDKIYKSDKIYTLTLRTIDRRIAEFFNNDLVNNYTSFIKGLTSEIRILPKKHIEKIYSLTPVILKNDNGYWKNVISLEDFEKRLKENLIKKYNNLSDEKLDEDFELYTGLEFKNRKPIANEYKGIKLLGDKVSLNISENKTAQDLAYMCLGTGLLEMNARGYGFCNYRWL
>NZ_CP013353.1|WP_125390914.1|567341_567542_-|hypothetical-protein
MYEEFFHCRNTAYIARPDTRKAVYVYENFYQGFVVGALSHMDGYIVKSNRETAGGRSDIYNNGIKW
>NZ_CP013353.1|WP_125390909.1|567651_568676_+|IS1595-family-transposase
MPNVKSILNDIEKLPLHQKEQILSTLKEILVLGSRVSQVEQEVKEFRFSKGKVYPICSSENISRNGKYNGKQRYICKSCKKTFTDFTNSATYKSKKTLDKWLKYAKCMVNGYSIRKSAEIVEINIATSFFWRHKILDCINTFLGKGYVDDVVEADEVFFAKSFKGTKPSNMPRNSRKRGKQIKKGGISKEQVCIATAIDRQGNLIMELACKGRITTNELETLYDGHIRHDSILCTDNHKSYMQFANDLSLEHKRIKRGKHKEGLYHIQHINAIHSNLKKWMNRFNGVATKYISNYIKWFKWLQIFDTDKESVKAKNFMVQSNVTHSYIKVKDLKNREPMYI

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Crispr_ID: NZ_CP013353_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013353_2

789810-789921

Orphan

Consensus_repeat	Method
TTACTAAAATCACCGTTCGCAAGGGTAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013353_2

>merge|NZ_CP013353|2|789810-789921|CRISPRCasFinder
GACCAAAACCCACCGTTCGCGAGGGTAAAAAACAAAATTCAACTCCTTTTTACTATTATTTTTATTAAAAATTGCGTTTCGTGACTTGTATTTCCGTTCGCAAGGGTAAAAA

>NZ_CP013353|2|2|789810-789921|CRISPRCasFinder
GACCAAAACCCACCGTTCGCGAGGGTAAAA	AACAAAATTCAACTCCTTTTTACTATTATTTTTATTAAAAATTGCGTTTCG
TGACTTGTATTTCCGTTCGCAAGGGTAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013353.1\|WP_003411363.1\|787886_789350_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013353.1\|WP_058372218.1\|784055_784898_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NZ_CP013353.1\|WP_003413593.1\|787313_787802_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013353.1\|WP_003430651.1\|785938_786862_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP013353.1\|WP_043853805.1\|780727_781273_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|223463
NZ_CP013353.1\|WP_033128234.1\|784907_785678_-\|cobalt-ECF-transporter-T-component-CbiQ	unknown	unknown	gnl\|CDD\|274139
NZ_CP013353.1\|WP_002581761.1\|782739_783486_-\|energy-coupling-factor-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181384
NZ_CP013353.1\|WP_002581762.1\|782423_782738_-\|energy-coupling-factor-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|179494
NZ_CP013353.1\|WP_002581765.1\|779803_780667_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223566
NZ_CP013353.1\|WP_002581763.1\|781328_781805_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207

Protein	Function_ID	Function_description	E-value
NZ_CP013353.1\|WP_002581765.1\|779803_780667_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	2.28753e-65
NZ_CP013353.1\|WP_058372218.1\|784055_784898_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	3.17438e-97
NZ_CP013353.1\|WP_002581761.1\|782739_783486_-\|energy-coupling-factor-ABC-transporter-permease	gnl\|CDD\|181384	PRK08319, PRK08319, energy-coupling factor ABC transporter permease.	6.40713e-110
NZ_CP013353.1\|WP_043853805.1\|780727_781273_-\|glutathione-peroxidase	gnl\|CDD\|223463	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones].	7.17774e-78
NZ_CP013353.1\|WP_033128234.1\|784907_785678_-\|cobalt-ECF-transporter-T-component-CbiQ	gnl\|CDD\|274139	TIGR02454, Uncharacterized_protein_MJ1089, cobalt ECF transporter T component CbiQ. This model represents the CbiQ component of the cobalt-specific ECF-type. CbiQ is now recognized as the T component of energy-coupling factor (ECF)-type transporters. The S component confers specificity (CbiM-N for cobalt systems), which CbiO is the ABC-family ATPase. In general, proteins found by this model reside next to the other putative subunits of the complex, identified as CbiN, CbiO, or CbiM. Note that the designation of cobalt transporter has been spread excessively among ECF system transporters with many other specificities. [Transport and binding proteins, Cations and iron carrying compounds].	3.95384e-35
NZ_CP013353.1\|WP_003430651.1\|785938_786862_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.31237e-43
NZ_CP013353.1\|WP_002581762.1\|782423_782738_-\|energy-coupling-factor-ABC-transporter-substrate-binding-protein	gnl\|CDD\|179494	PRK02898, PRK02898, energy-coupling factor ABC transporter substrate-binding protein.	3.26606e-24
NZ_CP013353.1\|WP_002581763.1\|781328_781805_-\|glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	5.12289e-96

>NZ_CP013353.1|WP_003411363.1|787886_789350_-|hypothetical-protein
MDKDDRLFKEDMIKLFKNVYEVLVKKEKFTDFYETLDNDLANLKDTGKREVIYKNLTNSIKRTKTRWLNKYVNGSNNSLSEDIEYAEHFYKRVLEGVYEPDKFVMIYGVNNIDEYKKKMFNELYTWRDNEDALLSSYKYIGTFQKRSITLAFRSDILKLYYDFLTNNAKSVITIPSVLSNFSIDTTNKKDYLKDDEKEFLDDNLSLEGTIDRLIVNKENQQKLLMKLEKQVYLRIEEGKDSLDIITQIALLKAIKQLNSLDTRIISHYYTHFYNIVADKSVDKYIGDLVSELGLSDSKKNTDAVIKSLLKIGSIRLESENYEGREIKGTLFEVSISERDGRKFAQVFLGGFLRTLIIMDSSFNFNKDVFDLLSNDAQQIAIWLQNRRLKMVLESEDFKDVIAIQRFTDAILMSTKSIYKKRDRIINALDELKQYKLIVKNYEYIKKNYEFVISYIELPESVIKKIKNKEFKTGELIEGQIHADYTVE
>NZ_CP013353.1|WP_003413593.1|787313_787802_+|hypothetical-protein
MFICICFLKHIYENDSIPTDKKHIERYLYKLLIYFNFKLYVATALIIYNTKQKIINTSIILKIFKILNFSLTILEYIIQNKKIIPITFKSFLIFFIVSLLFYIVSHIICYHFFPKYHIIFLKFFIKITFVWLFSQISIVYPKIYSSNNLIVSKIIIEFFLYI
>NZ_CP013353.1|WP_003430651.1|785938_786862_-|HAMP-domain-containing-histidine-kinase
MEILKTPQEYLYKNLVKKSEDLEATILELKKTIDDKNIIYKDYEKRTKHEEVKNEVLANISHEFKTPVNVIYSAVQTQDLIKNTANIEELLKYNKIIKQNCNRLTRLINNFIDTTRFEKENVKTEFTCENIVEITEYLTMCVVPFANSKKLNLIFDTSDEELYSLIDKELYDRMILNLLSNAIKYSRINGNIKVMIKDDNKFIKITIEDDGIGIDKYHLKDIFSIFERVDKSYSRNTEGSGLGLNIAKKIIDIHNGNISIESIKEKGTSVIVSIPKCSEKYVDNISHRLQDNTYVKYEVEVEMSDIY
>NZ_CP013353.1|WP_033128234.1|784907_785678_-|cobalt-ECF-transporter-T-component-CbiQ
MERKIDSYAYKSKLRKINPAFKVIFAFLTLLICIIADNIYVSLAIIVSMGFITIFKGGIKFHEYMSLMSIPVVFMILGSIAIAFGVSMSPIGDYNLHLCGFYLYTSDENIMKTMEIVMKAFGAISAMYMMTLSTNTSEIISVLRKAHIPKIIIELMNMIYRFIFILIDVQCKMKNSAQSRLGYIDFKTSCYSFGSTASNLLIVSLKKANTYYNAMESRCYNGDMLFLEEEKKVKTIHVVLACIYFSILIFIWYIAK
>NZ_CP013353.1|WP_058372218.1|784055_784898_-|ABC-transporter-ATP-binding-protein
MDDKIKEIILQIKELCYSYMGEKNTLNNINLDIHRGEKIAVLGSNGAGKSTFFLNINGVLTPKSGKIIYKGKAITKKNLNELRKNIGIVFQDADNQIIASTVLAEVSFGPMNLKLPKDEVIKRVNEALDYMNISEFKERPPHYLSGGEKKRVSIADIIAMKSEVIIFDEPTAALDPLNAEMLEEVLKKLSLENKTLLISTHDVDFAYRWADRVVVFSKGGIIGDGTPLEIFKNEKILKNSNLKRPIMLDVYETLIEKRILTNDNLYPKNINEFKKIFNKY
>NZ_CP013353.1|WP_002581761.1|782739_783486_-|energy-coupling-factor-ABC-transporter-permease
MKNQNKIIKIAILLVLMFGITPAANAMHIMEGYLPAKYCIGWGIICLPFLIGGFLSIKKSLDKDRKSVTILAMAGAFIFVISSLKIPSVTGSCSHMTGTGLGAILFGPLAVSVLGIIVLIFQAILLAHGGITTLGANTFSMSIAGPLLSFGLYKLCVKLKINRKVSVFIAAALGDLFTYCITSFQLAMAYPSPEGGVFASAVKFLGVFAPTQLPLAIIEGILTVIVIIGLETYAKSELTGLGFLKEEK
>NZ_CP013353.1|WP_002581762.1|782423_782738_-|energy-coupling-factor-ABC-transporter-substrate-binding-protein
MTKNKKTVIILLIIALAIAIIPLFALKGAEFGGSDDAGSVMVEEINGEAYEPWFTPVMETWIDGELPGEVESLLFCVQTGIGVGIFAFFMGRFVERKKWENKKE
>NZ_CP013353.1|WP_002581763.1|781328_781805_-|glutathione-peroxidase
MEFYDLSATKMNGRKVSMEEYRGKVVLVVNTASKCGLTPQFTELEELYNEYKDNGFEVLGFPCNQFAKQDPGSNKEIGEFCLRNYGVSFTMFEKIDVNGQNTHPIYKFLKNEAGGLIGRDIKWNFTKFLIDSEGNVIKRYSPITKPSSIKKDIYSLIK
>NZ_CP013353.1|WP_043853805.1|780727_781273_-|glutathione-peroxidase
MNIYDYKYKEISGKEVLLEDYRNKAIVIVNIASKCGFTPQLEDLQKIYEKYKEHGFEIIGFPSNQFNEQSPGSNSDLNTFCKRNYGVTFNLSEKIDVRGSNSHPLFNYLTEKCPFKGFNKENITEKMLYSITEENYPEYLVGDSIKWNFTKFLVDKNGNVVKRYESHIEPLDMIKDIEELL
>NZ_CP013353.1|WP_002581765.1|779803_780667_-|NAD(P)/FAD-dependent-oxidoreductase
MERYDLAIIGSGPAGVSAALNAKIRKKNFIIFGSKELSNKLTKAEKINNYLGFYGKSGAQIRDEFIKHMESMDISITEEKINNIYAMGDYFSLIANDKMYEASAIILATGVNFGRPFKGEEELLGKGVGYCATCDAPLYKDKIVTIIAYNKHEEDEVNFISTIASKVYYIPMYKEKVEVDEKVEIINDMPVEIIGKERVEKLILKNSEIETDGIFILRDSVSPSQLVPGLELDENHVKVDRKMTTNLQGCFAAGDIVGAPYQYIKAAGEGNIAALSAVSYIDNLNKK

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Crispr_ID: NZ_CP013353_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013353_3

790004-790094

Orphan

Consensus_repeat	Method
TTACTAAAATCACCGTTCGCAAGGGTAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013353_3

>merge|NZ_CP013353|3|790004-790094|CRISPRCasFinder
TTACTAAAATCACCGTTCGCAAGGGTAAAATACTTATAAACGTGATAACTTGGTTCACAAGTTACAAAAATCACCGTTCGCAAGGGTAAAA

>NZ_CP013353|3|3|790004-790094|CRISPRCasFinder
TTACTAAAATCACCGTTCGCAAGGGTAAAA	TACTTATAAACGTGATAACTTGGTTCACAAG
TTACAAAAATCACCGTTCGCAAGGGTAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013353.1\|WP_003411363.1\|787886_789350_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013353.1\|WP_058372218.1\|784055_784898_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NZ_CP013353.1\|WP_003413593.1\|787313_787802_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013353.1\|WP_003430651.1\|785938_786862_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP013353.1\|WP_043853805.1\|780727_781273_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|223463
NZ_CP013353.1\|WP_033128234.1\|784907_785678_-\|cobalt-ECF-transporter-T-component-CbiQ	unknown	unknown	gnl\|CDD\|274139
NZ_CP013353.1\|WP_002581761.1\|782739_783486_-\|energy-coupling-factor-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181384
NZ_CP013353.1\|WP_002581762.1\|782423_782738_-\|energy-coupling-factor-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|179494
NZ_CP013353.1\|WP_002581765.1\|779803_780667_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223566
NZ_CP013353.1\|WP_002581763.1\|781328_781805_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207

Protein	Function_ID	Function_description	E-value
NZ_CP013353.1\|WP_002581765.1\|779803_780667_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	2.28753e-65
NZ_CP013353.1\|WP_058372218.1\|784055_784898_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	3.17438e-97
NZ_CP013353.1\|WP_002581761.1\|782739_783486_-\|energy-coupling-factor-ABC-transporter-permease	gnl\|CDD\|181384	PRK08319, PRK08319, energy-coupling factor ABC transporter permease.	6.40713e-110
NZ_CP013353.1\|WP_043853805.1\|780727_781273_-\|glutathione-peroxidase	gnl\|CDD\|223463	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones].	7.17774e-78
NZ_CP013353.1\|WP_033128234.1\|784907_785678_-\|cobalt-ECF-transporter-T-component-CbiQ	gnl\|CDD\|274139	TIGR02454, Uncharacterized_protein_MJ1089, cobalt ECF transporter T component CbiQ. This model represents the CbiQ component of the cobalt-specific ECF-type. CbiQ is now recognized as the T component of energy-coupling factor (ECF)-type transporters. The S component confers specificity (CbiM-N for cobalt systems), which CbiO is the ABC-family ATPase. In general, proteins found by this model reside next to the other putative subunits of the complex, identified as CbiN, CbiO, or CbiM. Note that the designation of cobalt transporter has been spread excessively among ECF system transporters with many other specificities. [Transport and binding proteins, Cations and iron carrying compounds].	3.95384e-35
NZ_CP013353.1\|WP_003430651.1\|785938_786862_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.31237e-43
NZ_CP013353.1\|WP_002581762.1\|782423_782738_-\|energy-coupling-factor-ABC-transporter-substrate-binding-protein	gnl\|CDD\|179494	PRK02898, PRK02898, energy-coupling factor ABC transporter substrate-binding protein.	3.26606e-24
NZ_CP013353.1\|WP_002581763.1\|781328_781805_-\|glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	5.12289e-96

>NZ_CP013353.1|WP_003411363.1|787886_789350_-|hypothetical-protein
MDKDDRLFKEDMIKLFKNVYEVLVKKEKFTDFYETLDNDLANLKDTGKREVIYKNLTNSIKRTKTRWLNKYVNGSNNSLSEDIEYAEHFYKRVLEGVYEPDKFVMIYGVNNIDEYKKKMFNELYTWRDNEDALLSSYKYIGTFQKRSITLAFRSDILKLYYDFLTNNAKSVITIPSVLSNFSIDTTNKKDYLKDDEKEFLDDNLSLEGTIDRLIVNKENQQKLLMKLEKQVYLRIEEGKDSLDIITQIALLKAIKQLNSLDTRIISHYYTHFYNIVADKSVDKYIGDLVSELGLSDSKKNTDAVIKSLLKIGSIRLESENYEGREIKGTLFEVSISERDGRKFAQVFLGGFLRTLIIMDSSFNFNKDVFDLLSNDAQQIAIWLQNRRLKMVLESEDFKDVIAIQRFTDAILMSTKSIYKKRDRIINALDELKQYKLIVKNYEYIKKNYEFVISYIELPESVIKKIKNKEFKTGELIEGQIHADYTVE
>NZ_CP013353.1|WP_003413593.1|787313_787802_+|hypothetical-protein
MFICICFLKHIYENDSIPTDKKHIERYLYKLLIYFNFKLYVATALIIYNTKQKIINTSIILKIFKILNFSLTILEYIIQNKKIIPITFKSFLIFFIVSLLFYIVSHIICYHFFPKYHIIFLKFFIKITFVWLFSQISIVYPKIYSSNNLIVSKIIIEFFLYI
>NZ_CP013353.1|WP_003430651.1|785938_786862_-|HAMP-domain-containing-histidine-kinase
MEILKTPQEYLYKNLVKKSEDLEATILELKKTIDDKNIIYKDYEKRTKHEEVKNEVLANISHEFKTPVNVIYSAVQTQDLIKNTANIEELLKYNKIIKQNCNRLTRLINNFIDTTRFEKENVKTEFTCENIVEITEYLTMCVVPFANSKKLNLIFDTSDEELYSLIDKELYDRMILNLLSNAIKYSRINGNIKVMIKDDNKFIKITIEDDGIGIDKYHLKDIFSIFERVDKSYSRNTEGSGLGLNIAKKIIDIHNGNISIESIKEKGTSVIVSIPKCSEKYVDNISHRLQDNTYVKYEVEVEMSDIY
>NZ_CP013353.1|WP_033128234.1|784907_785678_-|cobalt-ECF-transporter-T-component-CbiQ
MERKIDSYAYKSKLRKINPAFKVIFAFLTLLICIIADNIYVSLAIIVSMGFITIFKGGIKFHEYMSLMSIPVVFMILGSIAIAFGVSMSPIGDYNLHLCGFYLYTSDENIMKTMEIVMKAFGAISAMYMMTLSTNTSEIISVLRKAHIPKIIIELMNMIYRFIFILIDVQCKMKNSAQSRLGYIDFKTSCYSFGSTASNLLIVSLKKANTYYNAMESRCYNGDMLFLEEEKKVKTIHVVLACIYFSILIFIWYIAK
>NZ_CP013353.1|WP_058372218.1|784055_784898_-|ABC-transporter-ATP-binding-protein
MDDKIKEIILQIKELCYSYMGEKNTLNNINLDIHRGEKIAVLGSNGAGKSTFFLNINGVLTPKSGKIIYKGKAITKKNLNELRKNIGIVFQDADNQIIASTVLAEVSFGPMNLKLPKDEVIKRVNEALDYMNISEFKERPPHYLSGGEKKRVSIADIIAMKSEVIIFDEPTAALDPLNAEMLEEVLKKLSLENKTLLISTHDVDFAYRWADRVVVFSKGGIIGDGTPLEIFKNEKILKNSNLKRPIMLDVYETLIEKRILTNDNLYPKNINEFKKIFNKY
>NZ_CP013353.1|WP_002581761.1|782739_783486_-|energy-coupling-factor-ABC-transporter-permease
MKNQNKIIKIAILLVLMFGITPAANAMHIMEGYLPAKYCIGWGIICLPFLIGGFLSIKKSLDKDRKSVTILAMAGAFIFVISSLKIPSVTGSCSHMTGTGLGAILFGPLAVSVLGIIVLIFQAILLAHGGITTLGANTFSMSIAGPLLSFGLYKLCVKLKINRKVSVFIAAALGDLFTYCITSFQLAMAYPSPEGGVFASAVKFLGVFAPTQLPLAIIEGILTVIVIIGLETYAKSELTGLGFLKEEK
>NZ_CP013353.1|WP_002581762.1|782423_782738_-|energy-coupling-factor-ABC-transporter-substrate-binding-protein
MTKNKKTVIILLIIALAIAIIPLFALKGAEFGGSDDAGSVMVEEINGEAYEPWFTPVMETWIDGELPGEVESLLFCVQTGIGVGIFAFFMGRFVERKKWENKKE
>NZ_CP013353.1|WP_002581763.1|781328_781805_-|glutathione-peroxidase
MEFYDLSATKMNGRKVSMEEYRGKVVLVVNTASKCGLTPQFTELEELYNEYKDNGFEVLGFPCNQFAKQDPGSNKEIGEFCLRNYGVSFTMFEKIDVNGQNTHPIYKFLKNEAGGLIGRDIKWNFTKFLIDSEGNVIKRYSPITKPSSIKKDIYSLIK
>NZ_CP013353.1|WP_043853805.1|780727_781273_-|glutathione-peroxidase
MNIYDYKYKEISGKEVLLEDYRNKAIVIVNIASKCGFTPQLEDLQKIYEKYKEHGFEIIGFPSNQFNEQSPGSNSDLNTFCKRNYGVTFNLSEKIDVRGSNSHPLFNYLTEKCPFKGFNKENITEKMLYSITEENYPEYLVGDSIKWNFTKFLVDKNGNVVKRYESHIEPLDMIKDIEELL
>NZ_CP013353.1|WP_002581765.1|779803_780667_-|NAD(P)/FAD-dependent-oxidoreductase
MERYDLAIIGSGPAGVSAALNAKIRKKNFIIFGSKELSNKLTKAEKINNYLGFYGKSGAQIRDEFIKHMESMDISITEEKINNIYAMGDYFSLIANDKMYEASAIILATGVNFGRPFKGEEELLGKGVGYCATCDAPLYKDKIVTIIAYNKHEEDEVNFISTIASKVYYIPMYKEKVEVDEKVEIINDMPVEIIGKERVEKLILKNSEIETDGIFILRDSVSPSQLVPGLELDENHVKVDRKMTTNLQGCFAAGDIVGAPYQYIKAAGEGNIAALSAVSYIDNLNKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013353_1	1.1\|554527\|36\|NZ_CP013353\|CRT	554527-554562	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	614215-614250	0	1.0
NZ_CP013353_1	1.2\|554593\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	554593-554628	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	614149-614184	0	1.0
NZ_CP013353_1	1.3\|554659\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	554659-554694	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	614083-614118	0	1.0
NZ_CP013353_1	1.4\|554725\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	554725-554760	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	614017-614052	0	1.0
NZ_CP013353_1	1.5\|554791\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	554791-554825	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	613952-613986	0	1.0
NZ_CP013353_1	1.6\|554856\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	554856-554890	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	613887-613921	0	1.0
NZ_CP013353_1	1.7\|554921\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	554921-554954	34	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	613823-613856	0	1.0
NZ_CP013353_1	1.8\|554985\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	554985-555019	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	613758-613792	0	1.0
NZ_CP013353_1	1.9\|555050\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555050-555083	34	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	613694-613727	0	1.0
NZ_CP013353_1	1.10\|555114\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555114-555149	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	613628-613663	0	1.0
NZ_CP013353_1	1.11\|555180\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555180-555213	34	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	613564-613597	0	1.0
NZ_CP013353_1	1.12\|555244\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555244-555279	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	613498-613533	0	1.0
NZ_CP013353_1	1.13\|555310\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555310-555345	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	613432-613467	0	1.0
NZ_CP013353_1	1.14\|555376\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555376-555411	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	613366-613401	0	1.0
NZ_CP013353_1	1.15\|555442\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555442-555477	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	613300-613335	0	1.0
NZ_CP013353_1	1.16\|555508\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555508-555543	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	613234-613269	0	1.0
NZ_CP013353_1	1.17\|555574\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555574-555609	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	613168-613203	0	1.0
NZ_CP013353_1	1.18\|555640\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555640-555675	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	613102-613137	0	1.0
NZ_CP013353_1	1.19\|555706\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555706-555741	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	613036-613071	0	1.0
NZ_CP013353_1	1.20\|555772\|37\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555772-555808	37	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	612969-613005	0	1.0
NZ_CP013353_1	1.21\|555839\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555839-555873	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	612904-612938	0	1.0
NZ_CP013353_1	1.22\|555904\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555904-555939	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	612838-612873	0	1.0
NZ_CP013353_1	1.23\|555970\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555970-556005	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	612772-612807	0	1.0
NZ_CP013353_1	1.24\|556036\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556036-556070	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	612707-612741	0	1.0
NZ_CP013353_1	1.25\|556101\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556101-556136	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	612641-612676	0	1.0
NZ_CP013353_1	1.26\|556167\|37\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556167-556203	37	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	612574-612610	0	1.0
NZ_CP013353_1	1.27\|556234\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556234-556268	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	612509-612543	0	1.0
NZ_CP013353_1	1.28\|556299\|37\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556299-556335	37	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	612442-612478	0	1.0
NZ_CP013353_1	1.29\|556366\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556366-556401	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	612376-612411	0	1.0
NZ_CP013353_1	1.30\|556432\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556432-556466	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	612311-612345	0	1.0
NZ_CP013353_1	1.31\|556497\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556497-556530	34	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	612247-612280	0	1.0
NZ_CP013353_1	1.32\|556561\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556561-556595	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	612182-612216	0	1.0
NZ_CP013353_1	1.33\|556626\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556626-556660	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	612117-612151	0	1.0
NZ_CP013353_1	1.34\|556691\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556691-556725	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	612052-612086	0	1.0
NZ_CP013353_1	1.35\|556756\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556756-556789	34	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	611988-612021	0	1.0
NZ_CP013353_1	1.36\|556820\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556820-556853	34	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	611924-611957	0	1.0
NZ_CP013353_1	1.37\|556884\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556884-556919	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	611858-611893	0	1.0
NZ_CP013353_1	1.38\|556950\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556950-556983	34	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	611794-611827	0	1.0
NZ_CP013353_1	1.39\|557014\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557014-557048	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	611729-611763	0	1.0
NZ_CP013353_1	1.40\|557079\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557079-557113	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	611664-611698	0	1.0
NZ_CP013353_1	1.41\|557144\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557144-557179	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	611598-611633	0	1.0
NZ_CP013353_1	1.42\|557210\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557210-557243	34	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	611534-611567	0	1.0
NZ_CP013353_1	1.43\|557274\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557274-557307	34	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	611470-611503	0	1.0
NZ_CP013353_1	1.44\|557338\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557338-557373	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	611404-611439	0	1.0
NZ_CP013353_1	1.45\|557404\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557404-557438	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	611339-611373	0	1.0
NZ_CP013353_1	1.46\|557469\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557469-557502	34	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	611275-611308	0	1.0
NZ_CP013353_1	1.47\|557533\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557533-557568	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	611209-611244	0	1.0
NZ_CP013353_1	1.48\|557599\|37\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557599-557635	37	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	611142-611178	0	1.0
NZ_CP013353_1	1.49\|557666\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557666-557699	34	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	611078-611111	0	1.0
NZ_CP013353_1	1.50\|557730\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557730-557763	34	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	611014-611047	0	1.0
NZ_CP013353_1	1.51\|557794\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557794-557828	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	610949-610983	0	1.0
NZ_CP013353_1	1.52\|557859\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557859-557893	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	610884-610918	0	1.0
NZ_CP013353_1	1.53\|557924\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557924-557958	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	610819-610853	0	1.0
NZ_CP013353_1	1.54\|557989\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557989-558023	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	610754-610788	0	1.0
NZ_CP013353_1	1.55\|558054\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	558054-558089	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	610688-610723	0	1.0
NZ_CP013353_1	1.56\|558120\|37\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	558120-558156	37	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	610621-610657	0	1.0
NZ_CP013353_1	1.57\|558187\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	558187-558221	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	610556-610590	0	1.0
NZ_CP013353_1	1.58\|558252\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	558252-558286	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	610491-610525	0	1.0
NZ_CP013353_2	2.1\|789840\|51\|NZ_CP013353\|CRISPRCasFinder	789840-789890	51	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	379362-379412	0	1.0
NZ_CP013353_2	2.1\|789840\|51\|NZ_CP013353\|CRISPRCasFinder	789840-789890	51	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	493938-493988	0	1.0
NZ_CP013353_2	2.1\|789840\|51\|NZ_CP013353\|CRISPRCasFinder	789840-789890	51	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	296581-296631	0	1.0
NZ_CP013353_2	2.1\|789840\|51\|NZ_CP013353\|CRISPRCasFinder	789840-789890	51	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	882019-882069	0	1.0
NZ_CP013353_2	2.1\|789840\|51\|NZ_CP013353\|CRISPRCasFinder	789840-789890	51	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	882034-882084	0	1.0
NZ_CP013353_2	2.1\|789840\|51\|NZ_CP013353\|CRISPRCasFinder	789840-789890	51	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	331611-331661	0	1.0
NZ_CP013353_3	3.1\|790034\|31\|NZ_CP013353\|CRISPRCasFinder	790034-790064	31	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	379188-379218	0	1.0
NZ_CP013353_3	3.1\|790034\|31\|NZ_CP013353\|CRISPRCasFinder	790034-790064	31	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	296775-296805	0	1.0
NZ_CP013353_3	3.1\|790034\|31\|NZ_CP013353\|CRISPRCasFinder	790034-790064	31	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	882213-882243	0	1.0
NZ_CP013353_3	3.1\|790034\|31\|NZ_CP013353\|CRISPRCasFinder	790034-790064	31	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	882228-882258	0	1.0
NZ_CP013353_3	3.1\|790034\|31\|NZ_CP013353\|CRISPRCasFinder	790034-790064	31	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	331805-331835	0	1.0
NZ_CP013353_3	3.1\|790034\|31\|NZ_CP013353\|CRISPRCasFinder	790034-790064	31	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	493764-493794	1	0.968
NZ_CP013353_1	1.43\|557274\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557274-557307	34	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	119179-119212	2	0.941
NZ_CP013353_1	1.43\|557274\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557274-557307	34	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	164616-164649	2	0.941
NZ_CP013353_1	1.1\|554527\|36\|NZ_CP013353\|CRT	554527-554562	36	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	683260-683295	3	0.917
NZ_CP013353_1	1.50\|557730\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557730-557763	34	LC513943	Enterococcus phage vB_EfaS-DELF1 DNA, complete genome	34411-34444	4	0.882
NZ_CP013353_1	1.50\|557730\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557730-557763	34	CAJDKB010000002	Enterococcus phage vB_EhiS_268 genome assembly, contig: phage268-genome, whole genome shotgun sequence	176-209	5	0.853
NZ_CP013353_1	1.54\|557989\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557989-558023	35	NZ_CP027180	Acinetobacter baumannii strain AR_0070 plasmid unnamed2, complete sequence	71793-71827	6	0.829
NZ_CP013353_1	1.54\|557989\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557989-558023	35	NZ_CP017255	Clostridium taeniosporum strain 1/k plasmid pCt2, complete sequence	12185-12219	6	0.829
NZ_CP013353_1	1.14\|555376\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555376-555411	36	NZ_CP024657	Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence	126853-126888	7	0.806
NZ_CP013353_1	1.14\|555376\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555376-555411	36	NZ_CP012101	Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence	331860-331895	7	0.806
NZ_CP013353_1	1.14\|555376\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555376-555411	36	NZ_CP015352	Bacillus thuringiensis strain MYBT18246 plasmid p142098, complete sequence	34469-34504	7	0.806
NZ_CP013353_1	1.14\|555376\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555376-555411	36	NZ_CP015352	Bacillus thuringiensis strain MYBT18246 plasmid p142098, complete sequence	43602-43637	7	0.806
NZ_CP013353_1	1.14\|555376\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555376-555411	36	NZ_CP015352	Bacillus thuringiensis strain MYBT18246 plasmid p142098, complete sequence	64881-64916	7	0.806
NZ_CP013353_1	1.14\|555376\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555376-555411	36	NZ_CP024772	Bacillus thuringiensis LM1212 plasmid pLM1, complete sequence	106615-106650	7	0.806
NZ_CP013353_1	1.14\|555376\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555376-555411	36	NC_022882	Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence	32917-32952	7	0.806
NZ_CP013353_1	1.14\|555376\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555376-555411	36	NC_022877	Bacillus thuringiensis YBT-1518 plasmid pBMB0232, complete sequence	13461-13496	7	0.806
NZ_CP013353_1	1.14\|555376\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555376-555411	36	CP016195	Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence	281432-281467	7	0.806
NZ_CP013353_1	1.14\|555376\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555376-555411	36	NZ_CP041074	Bacillus tropicus strain LM1212-W3 plasmid p1, complete sequence	83898-83933	7	0.806
NZ_CP013353_1	1.14\|555376\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555376-555411	36	NZ_CP015253	Bacillus thuringiensis Bt18247 plasmid p113275, complete sequence	75548-75583	7	0.806
NZ_CP013353_1	1.31\|556497\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556497-556530	34	JQ062992	Bacillus phage phIS3501, complete genome	29756-29789	7	0.794
NZ_CP013353_1	1.31\|556497\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556497-556530	34	MK448641	Streptococcus satellite phage Javan753, complete genome	3973-4006	7	0.794
NZ_CP013353_1	1.31\|556497\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556497-556530	34	MK448647	Streptococcus satellite phage Javan759, complete genome	7224-7257	7	0.794
NZ_CP013353_1	1.31\|556497\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556497-556530	34	KY963371	Bacillus phage Carmel_SA, complete genome	10539-10572	7	0.794
NZ_CP013353_1	1.31\|556497\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556497-556530	34	MK448631	Streptococcus satellite phage Javan744, complete genome	3755-3788	7	0.794
NZ_CP013353_1	1.31\|556497\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556497-556530	34	MK448615	Streptococcus satellite phage Javan728, complete genome	4151-4184	7	0.794
NZ_CP013353_1	1.31\|556497\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556497-556530	34	MK448627	Streptococcus satellite phage Javan740, complete genome	3570-3603	7	0.794
NZ_CP013353_1	1.31\|556497\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556497-556530	34	MK448614	Streptococcus satellite phage Javan727, complete genome	4225-4258	7	0.794
NZ_CP013353_1	1.31\|556497\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556497-556530	34	MK448636	Streptococcus satellite phage Javan749, complete genome	4406-4439	7	0.794
NZ_CP013353_1	1.31\|556497\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556497-556530	34	MK448632	Streptococcus satellite phage Javan745, complete genome	3765-3798	7	0.794
NZ_CP013353_1	1.31\|556497\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556497-556530	34	MK448623	Streptococcus satellite phage Javan736, complete genome	3206-3239	7	0.794
NZ_CP013353_1	1.44\|557338\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557338-557373	36	MT074137	Bacteroides phage DAC16, complete genome	55097-55132	7	0.806
NZ_CP013353_1	1.44\|557338\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557338-557373	36	MT074142	Bacteroides phage DAC23, complete genome	56212-56247	7	0.806
NZ_CP013353_1	1.44\|557338\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557338-557373	36	MT074141	Bacteroides phage DAC22, complete genome	59379-59414	7	0.806
NZ_CP013353_1	1.44\|557338\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557338-557373	36	MT074139	Bacteroides phage DAC19, complete genome	59148-59183	7	0.806
NZ_CP013353_1	1.44\|557338\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557338-557373	36	MT074140	Bacteroides phage DAC20, complete genome	59148-59183	7	0.806
NZ_CP013353_1	1.46\|557469\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557469-557502	34	NZ_CP017256	Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence	147331-147364	7	0.794
NZ_CP013353_1	1.58\|558252\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	558252-558286	35	MH542234	Staphylococcus phage Terranova, complete genome	16433-16467	7	0.8
NZ_CP013353_1	1.58\|558252\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	558252-558286	35	KP027447	Staphylococcus phage phiIPLA-C1C, complete genome	124786-124820	7	0.8
NZ_CP013353_1	1.7\|554921\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	554921-554954	34	MN693589	Marine virus AFVG_25M348, complete genome	22608-22641	8	0.765
NZ_CP013353_1	1.32\|556561\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556561-556595	35	NZ_CP031272	Staphylococcus caprae strain 26D plasmid unnamed1, complete sequence	1177-1211	8	0.771
NZ_CP013353_1	1.32\|556561\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556561-556595	35	NZ_CP051645	Staphylococcus caprae strain SY333 plasmid pSY333-41, complete sequence	22774-22808	8	0.771
NZ_CP013353_1	1.46\|557469\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557469-557502	34	NZ_CP017464	Staphylococcus pasteuri strain JS7 plasmid pSNJS701, complete sequence	24370-24403	8	0.765
NZ_CP013353_1	1.46\|557469\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557469-557502	34	NZ_MF547664	Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence	15979-16012	8	0.765
NZ_CP013353_1	1.4\|554725\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	554725-554760	36	NC_017232	Borreliella afzelii PKo plasmid lp17, complete sequence	16884-16919	9	0.75
NZ_CP013353_1	1.14\|555376\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555376-555411	36	NZ_CP024773	Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence	152680-152715	9	0.75
NZ_CP013353_1	1.14\|555376\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555376-555411	36	NZ_CP041075	Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence	18635-18670	9	0.75
NZ_CP013353_1	1.31\|556497\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556497-556530	34	AP014137	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C47-MedDCM-OCT-S35-C41, * SEQUENCING IN PROGRESS *	34987-35020	9	0.735
NZ_CP013353_1	1.31\|556497\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556497-556530	34	KY963370	Bacillus phage Negev_SA, complete genome	10540-10573	9	0.735
NZ_CP013353_1	1.31\|556497\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556497-556530	34	MF417893	Uncultured Caudovirales phage clone 9AX_2, partial genome	10931-10964	9	0.735
NZ_CP013353_1	1.31\|556497\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556497-556530	34	KY963369	Bacillus phage Tavor_SA, complete genome	10767-10800	9	0.735
NZ_CP013353_1	1.31\|556497\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556497-556530	34	AP014376	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S42-C64, * SEQUENCING IN PROGRESS *	1514-1547	9	0.735
NZ_CP013353_1	1.32\|556561\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556561-556595	35	NZ_CP018901	Campylobacter coli strain YH502 plasmid pCOS502, complete sequence	58869-58903	9	0.743
NZ_CP013353_1	1.32\|556561\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556561-556595	35	NZ_CP018901	Campylobacter coli strain YH502 plasmid pCOS502, complete sequence	31008-31042	9	0.743
NZ_CP013353_1	1.32\|556561\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556561-556595	35	NZ_CP040614	Campylobacter sp. CFSAN093246 plasmid unnamed, complete sequence	28758-28792	9	0.743
NZ_CP013353_1	1.32\|556561\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556561-556595	35	NZ_CP048772	Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence	55389-55423	9	0.743
NZ_CP013353_1	1.32\|556561\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556561-556595	35	NZ_CP044166	Campylobacter coli strain AR-0416 plasmid pAR-0416	114393-114427	9	0.743
NZ_CP013353_1	1.32\|556561\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556561-556595	35	NZ_CP044166	Campylobacter coli strain AR-0416 plasmid pAR-0416	122204-122238	9	0.743
NZ_CP013353_1	1.32\|556561\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556561-556595	35	NZ_CP044166	Campylobacter coli strain AR-0416 plasmid pAR-0416	130017-130051	9	0.743
NZ_CP013353_1	1.32\|556561\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556561-556595	35	NZ_CP025282	Campylobacter coli strain YH503 plasmid pCOS503, complete sequence	20645-20679	9	0.743
NZ_CP013353_1	1.32\|556561\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556561-556595	35	NZ_CP044174	Campylobacter jejuni strain AR-0412 plasmid pAR-0412, complete sequence	53198-53232	9	0.743
NZ_CP013353_1	1.45\|557404\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557404-557438	35	MT460516	Vibrio phage Quinn, complete genome	88568-88602	9	0.743
NZ_CP013353_1	1.45\|557404\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557404-557438	35	MT460515	Vibrio phage Cody, complete genome	88047-88081	9	0.743
NZ_CP013353_1	1.45\|557404\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557404-557438	35	MK895508	Vibrio phage Brizo, complete genome	85050-85084	9	0.743
NZ_CP013353_1	1.49\|557666\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557666-557699	34	NZ_CP047096	Bacillus marisflavi strain 151-25 plasmid p25, complete sequence	103977-104010	9	0.735
NZ_CP013353_1	1.49\|557666\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557666-557699	34	NZ_CP019365	Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence	8336-8369	9	0.735
NZ_CP013353_1	1.49\|557666\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557666-557699	34	NZ_CP019365	Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence	14884-14917	9	0.735
NZ_CP013353_1	1.49\|557666\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557666-557699	34	NZ_CP019368	Borrelia turicatae 91E135 isolate Oz1 plasmid lpT39, complete sequence	18745-18778	9	0.735
NZ_CP013353_1	1.49\|557666\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557666-557699	34	NZ_CP024444	Moraxella osloensis strain NP7 plasmid pNP7-1, complete sequence	223151-223184	9	0.735
NZ_CP013353_1	1.49\|557666\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557666-557699	34	NZ_CP026129	Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence	95593-95626	9	0.735
NZ_CP013353_1	1.49\|557666\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557666-557699	34	NZ_CP010090	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence	149025-149058	9	0.735
NZ_CP013353_1	1.49\|557666\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557666-557699	34	NZ_CP015632	Borrelia turicatae strain BTE5EL plasmid lp30	2936-2969	9	0.735
NZ_CP013353_1	1.49\|557666\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557666-557699	34	NZ_CP015632	Borrelia turicatae strain BTE5EL plasmid lp30	7887-7920	9	0.735
NZ_CP013353_1	1.49\|557666\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557666-557699	34	NZ_CP015633	Borrelia turicatae strain BTE5EL plasmid lp31	23514-23547	9	0.735
NZ_CP013353_1	1.49\|557666\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557666-557699	34	NZ_CP015634	Borrelia turicatae strain BTE5EL plasmid lp40	25950-25983	9	0.735
NZ_CP013353_1	1.49\|557666\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557666-557699	34	NZ_CP015634	Borrelia turicatae strain BTE5EL plasmid lp40	5601-5634	9	0.735
NZ_CP013353_1	1.49\|557666\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557666-557699	34	NZ_CP015635	Borrelia turicatae strain BTE5EL plasmid lp44	32506-32539	9	0.735
NZ_CP013353_1	1.49\|557666\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557666-557699	34	NZ_CP014853	Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence	124731-124764	9	0.735
NZ_CP013353_1	1.49\|557666\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557666-557699	34	NZ_CP015636	Borrelia turicatae strain BTE5EL plasmid lp48	5662-5695	9	0.735
NZ_CP013353_1	1.31\|556497\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556497-556530	34	NZ_CP009064	Borreliella afzelii K78 plasmid lp28-3, complete sequence	1290-1323	10	0.706
NZ_CP013353_1	1.31\|556497\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556497-556530	34	NC_017233	Borreliella afzelii PKo plasmid lp28-3, complete sequence	22431-22464	10	0.706
NZ_CP013353_1	1.32\|556561\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556561-556595	35	NZ_CP048111	Klebsiella michiganensis strain BD177 plasmid unnamed3	69913-69947	10	0.714
NZ_CP013353_1	1.38\|556950\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556950-556983	34	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	548781-548814	10	0.706
NZ_CP013353_1	1.43\|557274\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557274-557307	34	AP014390	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S44-C9, * SEQUENCING IN PROGRESS *	29774-29807	10	0.706
NZ_CP013353_1	1.46\|557469\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557469-557502	34	NC_007390	Spiroplasma citri pSci4 plasmid	8518-8551	10	0.706
NZ_CP013353_1	1.46\|557469\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557469-557502	34	NZ_CP031090	Spiroplasma phoeniceum P40 plasmid pSPh387, complete sequence	26317-26350	10	0.706
NZ_CP013353_1	1.46\|557469\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557469-557502	34	MH617194	Microviridae sp. isolate ctbf575, complete genome	4985-5018	10	0.706
NZ_CP013353_1	1.49\|557666\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557666-557699	34	NZ_MK275621	Clostridium perfringens strain JXJA17 plasmid p3, complete sequence	6737-6770	10	0.706
NZ_CP013353_1	1.54\|557989\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557989-558023	35	NZ_CP009118	Borreliella valaisiana Tom4006 plasmid cp26, complete sequence	14583-14617	10	0.714
NZ_CP013353_1	1.4\|554725\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	554725-554760	36	NZ_CP009061	Borreliella afzelii K78 plasmid lp17, complete sequence	17269-17304	11	0.694
NZ_CP013353_1	1.4\|554725\|36\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	554725-554760	36	NZ_CP042833	Enterococcus faecium strain FA3 plasmid unnamed1	105575-105610	11	0.694
NZ_CP013353_1	1.7\|554921\|34\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	554921-554954	34	NZ_CP015631	Borrelia turicatae strain BTE5EL plasmid lp24	822-855	11	0.676
NZ_CP013353_1	1.21\|555839\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	555839-555873	35	MK886800	Escherichia phage EcNP1, complete genome	117935-117969	11	0.686
NZ_CP013353_1	1.32\|556561\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556561-556595	35	NC_018141	Legionella pneumophila subsp. pneumophila plasmid pLELO, complete sequence	147812-147846	11	0.686
NZ_CP013353_1	1.32\|556561\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556561-556595	35	NZ_CP025492	Legionella sainthelensi strain LA01-117 plasmid pLA01-117_150k, complete sequence	69842-69876	11	0.686
NZ_CP013353_1	1.32\|556561\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556561-556595	35	NZ_CP021284	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed1, complete sequence	141146-141180	11	0.686
NZ_CP013353_1	1.32\|556561\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556561-556595	35	NZ_CP011106	Legionella pneumophila strain L10-023 isolate Ulm plasmid unnamed, complete sequence	138026-138060	11	0.686
NZ_CP013353_1	1.32\|556561\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556561-556595	35	NZ_CP045305	Legionella longbeachae strain B1445CHC plasmid pB1445CHC_150k, complete sequence	6239-6273	11	0.686
NZ_CP013353_1	1.32\|556561\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	556561-556595	35	NZ_CP042253	Legionella longbeachae strain B3526CHC plasmid pB3526CHC_150k, complete sequence	8425-8459	11	0.686
NZ_CP013353_1	1.54\|557989\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	557989-558023	35	CP009911	Borreliella chilensis strain VA1 plasmid cp26, complete sequence	22520-22554	12	0.657
NZ_CP013353_1	1.58\|558252\|35\|NZ_CP013353\|CRT,PILER-CR,CRISPRCasFinder	558252-558286	35	NZ_CP034238	Aliivibrio salmonicida strain VS224 plasmid pRVS1-224, complete sequence	55907-55941	12	0.657

1. spacer 1.1|554527|36|NZ_CP013353|CRT matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgttaattctctattaaaatcctttttctgcaacca	CRISPR spacer
cgttaattctctattaaaatcctttttctgcaacca	Protospacer
************************************

2. spacer 1.2|554593|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtactatctagtaattcgaatagagccttttctctt	CRISPR spacer
gtactatctagtaattcgaatagagccttttctctt	Protospacer
************************************

3. spacer 1.3|554659|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

caatctaccatgtaatctaaattagagtttaaattt	CRISPR spacer
caatctaccatgtaatctaaattagagtttaaattt	Protospacer
************************************

4. spacer 1.4|554725|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

tgaatattttttaatgtatctatatatttttgcttt	CRISPR spacer
tgaatattttttaatgtatctatatatttttgcttt	Protospacer
************************************

5. spacer 1.5|554791|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

gcaatatagtgaaacgtgttcggattatcctttcg	CRISPR spacer
gcaatatagtgaaacgtgttcggattatcctttcg	Protospacer
***********************************

6. spacer 1.6|554856|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

ctaaatgctctacgcaacattgtatattgttgttc	CRISPR spacer
ctaaatgctctacgcaacattgtatattgttgttc	Protospacer
***********************************

7. spacer 1.7|554921|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

tagttatttgatgtattttttcttcgttgtacca	CRISPR spacer
tagttatttgatgtattttttcttcgttgtacca	Protospacer
**********************************

8. spacer 1.8|554985|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

tgcttctcgtacatatacagagtattttggttcaa	CRISPR spacer
tgcttctcgtacatatacagagtattttggttcaa	Protospacer
***********************************

9. spacer 1.9|555050|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcaagaagaaccaccaaaaaagagggagttcgg	CRISPR spacer
ctcaagaagaaccaccaaaaaagagggagttcgg	Protospacer
**********************************

10. spacer 1.10|555114|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

aaaacgctaacaatgatttaggtaactcaagtttaa	CRISPR spacer
aaaacgctaacaatgatttaggtaactcaagtttaa	Protospacer
************************************

11. spacer 1.11|555180|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

tttaactttattaacatgattataccccgcatat	CRISPR spacer
tttaactttattaacatgattataccccgcatat	Protospacer
**********************************

12. spacer 1.12|555244|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

aaataaattaaaagataaggtaatgattataaattg	CRISPR spacer
aaataaattaaaagataaggtaatgattataaattg	Protospacer
************************************

13. spacer 1.13|555310|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

atgcgttttttagagcgttcgacaatgagaattaca	CRISPR spacer
atgcgttttttagagcgttcgacaatgagaattaca	Protospacer
************************************

14. spacer 1.14|555376|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

attaaaattacagatggagaaaatgcaaaagaaaat	CRISPR spacer
attaaaattacagatggagaaaatgcaaaagaaaat	Protospacer
************************************

15. spacer 1.15|555442|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

tttaataattggaattgcatttggatttctattaaa	CRISPR spacer
tttaataattggaattgcatttggatttctattaaa	Protospacer
************************************

16. spacer 1.16|555508|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

tgtgctttgtcaagaacaattttgttactgtttgct	CRISPR spacer
tgtgctttgtcaagaacaattttgttactgtttgct	Protospacer
************************************

17. spacer 1.17|555574|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

catattaaatacactctatctcctaaaattaaccat	CRISPR spacer
catattaaatacactctatctcctaaaattaaccat	Protospacer
************************************

18. spacer 1.18|555640|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

gttctgttatcgctattatacacgttcataatattc	CRISPR spacer
gttctgttatcgctattatacacgttcataatattc	Protospacer
************************************

19. spacer 1.19|555706|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

aataacgattttaaaaggaagttcaaggagggatta	CRISPR spacer
aataacgattttaaaaggaagttcaaggagggatta	Protospacer
************************************

20. spacer 1.20|555772|37|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

tattgccaattgctgttcaattttagttgccatatat	CRISPR spacer
tattgccaattgctgttcaattttagttgccatatat	Protospacer
*************************************

21. spacer 1.21|555839|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

agtgatagtaattcaaacagttctagtgcttcggt	CRISPR spacer
agtgatagtaattcaaacagttctagtgcttcggt	Protospacer
***********************************

22. spacer 1.22|555904|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcaatatatgtgtttaatagtgtttattcttctgg	CRISPR spacer
ctcaatatatgtgtttaatagtgtttattcttctgg	Protospacer
************************************

23. spacer 1.23|555970|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

agaaattcaaaaccatgtaaatacagaagaagtaac	CRISPR spacer
agaaattcaaaaccatgtaaatacagaagaagtaac	Protospacer
************************************

24. spacer 1.24|556036|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

tctctagcttgtacaacataagcttctttttcatc	CRISPR spacer
tctctagcttgtacaacataagcttctttttcatc	Protospacer
***********************************

25. spacer 1.25|556101|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

aaaatcctgtaaatccaaaattttccctcattagct	CRISPR spacer
aaaatcctgtaaatccaaaattttccctcattagct	Protospacer
************************************

26. spacer 1.26|556167|37|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtttagcgcctgtgtgacattcgtcaattaaaaca	CRISPR spacer
ctgtttagcgcctgtgtgacattcgtcaattaaaaca	Protospacer
*************************************

27. spacer 1.27|556234|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

aagattagataaactagtaggatggcatataggaa	CRISPR spacer
aagattagataaactagtaggatggcatataggaa	Protospacer
***********************************

28. spacer 1.28|556299|37|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttacgccatatcttaataataacaataataatttatc	CRISPR spacer
ttacgccatatcttaataataacaataataatttatc	Protospacer
*************************************

29. spacer 1.29|556366|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

tttagaaattcaggacaagattagaaaattatcaaa	CRISPR spacer
tttagaaattcaggacaagattagaaaattatcaaa	Protospacer
************************************

30. spacer 1.30|556432|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttagattcaagtacagagttggtagatagttattg	CRISPR spacer
ttagattcaagtacagagttggtagatagttattg	Protospacer
***********************************

31. spacer 1.31|556497|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

tttgttttcttttctttgattgtattttcttttt	CRISPR spacer
tttgttttcttttctttgattgtattttcttttt	Protospacer
**********************************

32. spacer 1.32|556561|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtttttagaaagatataaaaaataattttatgagg	CRISPR spacer
gtttttagaaagatataaaaaataattttatgagg	Protospacer
***********************************

33. spacer 1.33|556626|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

aatagatatgataatacaaagaaagtttatagctt	CRISPR spacer
aatagatatgataatacaaagaaagtttatagctt	Protospacer
***********************************

34. spacer 1.34|556691|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

caattgggtttatgcatttcttatctttctaaaaa	CRISPR spacer
caattgggtttatgcatttcttatctttctaaaaa	Protospacer
***********************************

35. spacer 1.35|556756|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

tggatgctaatagcattagaattcatattataga	CRISPR spacer
tggatgctaatagcattagaattcatattataga	Protospacer
**********************************

36. spacer 1.36|556820|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

caattgcaacaagatttacagaaaaagatgtaac	CRISPR spacer
caattgcaacaagatttacagaaaaagatgtaac	Protospacer
**********************************

37. spacer 1.37|556884|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgggatatagatttaccaagtttgaattacaacaa	CRISPR spacer
ttgggatatagatttaccaagtttgaattacaacaa	Protospacer
************************************

38. spacer 1.38|556950|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

aaattcaatctactaaaagcaaatgatatatata	CRISPR spacer
aaattcaatctactaaaagcaaatgatatatata	Protospacer
**********************************

39. spacer 1.39|557014|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

tttatttcttaaaacctaacacaaaacccacaact	CRISPR spacer
tttatttcttaaaacctaacacaaaacccacaact	Protospacer
***********************************

40. spacer 1.40|557079|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

gttaagtctctgtgtttaaattctttaactattgt	CRISPR spacer
gttaagtctctgtgtttaaattctttaactattgt	Protospacer
***********************************

41. spacer 1.41|557144|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

attgttttgatatattttagttaattcattatattt	CRISPR spacer
attgttttgatatattttagttaattcattatattt	Protospacer
************************************

42. spacer 1.42|557210|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

tcttacttgactcccatcatttgctaaaactgtt	CRISPR spacer
tcttacttgactcccatcatttgctaaaactgtt	Protospacer
**********************************

43. spacer 1.43|557274|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

aactagctaaaagtatagcagatgcaagtttctt	CRISPR spacer
aactagctaaaagtatagcagatgcaagtttctt	Protospacer
**********************************

44. spacer 1.44|557338|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

taaaatatataaagatggttttaatatatcagatga	CRISPR spacer
taaaatatataaagatggttttaatatatcagatga	Protospacer
************************************

45. spacer 1.45|557404|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

gaaatagttaaaagcgtacaagcaacagggaaata	CRISPR spacer
gaaatagttaaaagcgtacaagcaacagggaaata	Protospacer
***********************************

46. spacer 1.46|557469|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

tttcagtattttcaactattgtattgttttcttc	CRISPR spacer
tttcagtattttcaactattgtattgttttcttc	Protospacer
**********************************

47. spacer 1.47|557533|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

aatattttatttaatctattaacatattcttctttt	CRISPR spacer
aatattttatttaatctattaacatattcttctttt	Protospacer
************************************

48. spacer 1.48|557599|37|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

gccttcctacaggtagtggcaaaactattttgatggc	CRISPR spacer
gccttcctacaggtagtggcaaaactattttgatggc	Protospacer
*************************************

49. spacer 1.49|557666|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttagaggatataaaacataaataaataaaatcaa	CRISPR spacer
ttagaggatataaaacataaataaataaaatcaa	Protospacer
**********************************

50. spacer 1.50|557730|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

caaaatctattatataattagtacataagataaa	CRISPR spacer
caaaatctattatataattagtacataagataaa	Protospacer
**********************************

51. spacer 1.51|557794|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

atagcataaaataaataataagaggtgtaaagata	CRISPR spacer
atagcataaaataaataataagaggtgtaaagata	Protospacer
***********************************

52. spacer 1.52|557859|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

ctatcattgtatgtcaaacttgttaatgtcgtata	CRISPR spacer
ctatcattgtatgtcaaacttgttaatgtcgtata	Protospacer
***********************************

53. spacer 1.53|557924|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

gaggatgttaacagttaaataaaattaaagggagt	CRISPR spacer
gaggatgttaacagttaaataaaattaaagggagt	Protospacer
***********************************

54. spacer 1.54|557989|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

cataaagaaacattaaatattataataaagttaag	CRISPR spacer
cataaagaaacattaaatattataataaagttaag	Protospacer
***********************************

55. spacer 1.55|558054|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

attctctttatattgagtatataactgattattagt	CRISPR spacer
attctctttatattgagtatataactgattattagt	Protospacer
************************************

56. spacer 1.56|558120|37|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttggaaagtttttagatgtatacaccattgaaaacag	CRISPR spacer
ttggaaagtttttagatgtatacaccattgaaaacag	Protospacer
*************************************

57. spacer 1.57|558187|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttttagatttgaaagcttctaataattcattgttt	CRISPR spacer
ttttagatttgaaagcttctaataattcattgttt	Protospacer
***********************************

58. spacer 1.58|558252|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

ccaactgtatttgatattttttcttttcttgctac	CRISPR spacer
ccaactgtatttgatattttttcttttcttgctac	Protospacer
***********************************

59. spacer 2.1|789840|51|NZ_CP013353|CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

60. spacer 2.1|789840|51|NZ_CP013353|CRISPRCasFinder matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

61. spacer 2.1|789840|51|NZ_CP013353|CRISPRCasFinder matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

62. spacer 2.1|789840|51|NZ_CP013353|CRISPRCasFinder matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

63. spacer 2.1|789840|51|NZ_CP013353|CRISPRCasFinder matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

64. spacer 2.1|789840|51|NZ_CP013353|CRISPRCasFinder matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

65. spacer 3.1|790034|31|NZ_CP013353|CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttggttcacaag	Protospacer
*******************************

66. spacer 3.1|790034|31|NZ_CP013353|CRISPRCasFinder matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 0, identity: 1.0

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttggttcacaag	Protospacer
*******************************

67. spacer 3.1|790034|31|NZ_CP013353|CRISPRCasFinder matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 0, identity: 1.0

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttggttcacaag	Protospacer
*******************************

68. spacer 3.1|790034|31|NZ_CP013353|CRISPRCasFinder matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 0, identity: 1.0

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttggttcacaag	Protospacer
*******************************

69. spacer 3.1|790034|31|NZ_CP013353|CRISPRCasFinder matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 0, identity: 1.0

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttggttcacaag	Protospacer
*******************************

70. spacer 3.1|790034|31|NZ_CP013353|CRISPRCasFinder matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 1, identity: 0.968

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttcgttcacaag	Protospacer
********************* *********

71. spacer 1.43|557274|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 2, identity: 0.941

aactagctaaaagtatagcagatgcaagtttctt	CRISPR spacer
agttagctaaaagtatagcagatgcaagtttctt	Protospacer
*..*******************************

72. spacer 1.43|557274|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 2, identity: 0.941

aactagctaaaagtatagcagatgcaagtttctt	CRISPR spacer
agttagctaaaagtatagcagatgcaagtttctt	Protospacer
*..*******************************

73. spacer 1.1|554527|36|NZ_CP013353|CRT matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 3, identity: 0.917

cgttaattctctattaaaatcctttttctgcaacca	CRISPR spacer
cgttaattctctattaaaatcctttttctgctaacc	Protospacer
******************************* * *

74. spacer 1.50|557730|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to LC513943 (Enterococcus phage vB_EfaS-DELF1 DNA, complete genome) position: , mismatch: 4, identity: 0.882

caaaatctattatataattagtacataagataaa	CRISPR spacer
cctcatctatgatataattagtacataagataaa	Protospacer
*   ****** ***********************

75. spacer 1.50|557730|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to CAJDKB010000002 (Enterococcus phage vB_EhiS_268 genome assembly, contig: phage268-genome, whole genome shotgun sequence) position: , mismatch: 5, identity: 0.853

caaaatctattatataattagtacataagataaa	CRISPR spacer
ccttatctatgatataatgagtacataagataaa	Protospacer
*   ****** ******* ***************

76. spacer 1.54|557989|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP027180 (Acinetobacter baumannii strain AR_0070 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.829

cataaagaaacattaaatattataataaagttaag--	CRISPR spacer
gttaaagaaatattaaataatataataaa--taagtt	Protospacer
  ********.******** *********  ****

77. spacer 1.54|557989|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017255 (Clostridium taeniosporum strain 1/k plasmid pCt2, complete sequence) position: , mismatch: 6, identity: 0.829

cataaagaaacattaaatattataataaagttaag-	CRISPR spacer
ccaaaagaaatattaaatattataa-aaatttaaat	Protospacer
*  *******.************** *** ****.

78. spacer 1.14|555376|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP024657 (Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence) position: , mismatch: 7, identity: 0.806

attaaaattacagatggagaaaatgcaaaagaaaat	CRISPR spacer
agtaaaagaacagatggagaaaatgcaaacaaagtt	Protospacer
* *****  ******************** .**. *

79. spacer 1.14|555376|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP012101 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence) position: , mismatch: 7, identity: 0.806

attaaaattacagatggagaaaatgcaaaagaaaat	CRISPR spacer
agtaaaagaacagatggagaaaatgcaaacaaagtt	Protospacer
* *****  ******************** .**. *

80. spacer 1.14|555376|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015352 (Bacillus thuringiensis strain MYBT18246 plasmid p142098, complete sequence) position: , mismatch: 7, identity: 0.806

attaaaattacagatggagaaaatgcaaaagaaaat	CRISPR spacer
agtaaaagaacagatggagaaaatgcaaacaaagtt	Protospacer
* *****  ******************** .**. *

81. spacer 1.14|555376|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015352 (Bacillus thuringiensis strain MYBT18246 plasmid p142098, complete sequence) position: , mismatch: 7, identity: 0.806

attaaaattacagatggagaaaatgcaaaagaaaat	CRISPR spacer
agtaaaagaacagatggagaaaatgcaaacaaagtt	Protospacer
* *****  ******************** .**. *

82. spacer 1.14|555376|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015352 (Bacillus thuringiensis strain MYBT18246 plasmid p142098, complete sequence) position: , mismatch: 7, identity: 0.806

attaaaattacagatggagaaaatgcaaaagaaaat	CRISPR spacer
agtaaaagaacagatggagaaaatgcaaacaaagtt	Protospacer
* *****  ******************** .**. *

83. spacer 1.14|555376|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP024772 (Bacillus thuringiensis LM1212 plasmid pLM1, complete sequence) position: , mismatch: 7, identity: 0.806

attaaaattacagatggagaaaatgcaaaagaaaat	CRISPR spacer
agtaaaagaacagatggagaaaatgcaaacaaagtt	Protospacer
* *****  ******************** .**. *

84. spacer 1.14|555376|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NC_022882 (Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence) position: , mismatch: 7, identity: 0.806

attaaaattacagatggagaaaatgcaaaagaaaat	CRISPR spacer
agtaaaagaacagatggagaaaatgcaaacaaagtt	Protospacer
* *****  ******************** .**. *

85. spacer 1.14|555376|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NC_022877 (Bacillus thuringiensis YBT-1518 plasmid pBMB0232, complete sequence) position: , mismatch: 7, identity: 0.806

attaaaattacagatggagaaaatgcaaaagaaaat	CRISPR spacer
agtaaaagaacagatggagaaaatgcaaacaaagtt	Protospacer
* *****  ******************** .**. *

86. spacer 1.14|555376|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to CP016195 (Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence) position: , mismatch: 7, identity: 0.806

attaaaattacagatggagaaaatgcaaaagaaaat	CRISPR spacer
agtaaaagaacagatggagaaaatgcaaacaaagtt	Protospacer
* *****  ******************** .**. *

87. spacer 1.14|555376|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP041074 (Bacillus tropicus strain LM1212-W3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.806

attaaaattacagatggagaaaatgcaaaagaaaat	CRISPR spacer
agtaaaagaacagatggagaaaatgcaaacaaagtt	Protospacer
* *****  ******************** .**. *

88. spacer 1.14|555376|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015253 (Bacillus thuringiensis Bt18247 plasmid p113275, complete sequence) position: , mismatch: 7, identity: 0.806

attaaaattacagatggagaaaatgcaaaagaaaat	CRISPR spacer
agtaaaagaacagatggagaaaatgcaaacaaagtt	Protospacer
* *****  ******************** .**. *

89. spacer 1.31|556497|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to JQ062992 (Bacillus phage phIS3501, complete genome) position: , mismatch: 7, identity: 0.794

tttgttttcttttctttgattgtattttcttttt	CRISPR spacer
gtttgtataatttctttgattttattttcttttt	Protospacer
 **  * *  *********** ************

90. spacer 1.31|556497|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MK448641 (Streptococcus satellite phage Javan753, complete genome) position: , mismatch: 7, identity: 0.794

tttgttttc-ttttctttgattgtattttcttttt	CRISPR spacer
-ttgtcaacactttttttgattttattttcttttt	Protospacer
 ****.  * .***.******* ************

91. spacer 1.31|556497|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MK448647 (Streptococcus satellite phage Javan759, complete genome) position: , mismatch: 7, identity: 0.794

tttgttttc-ttttctttgattgtattttcttttt	CRISPR spacer
-ttgtcaacactttttttgattttattttcttttt	Protospacer
 ****.  * .***.******* ************

92. spacer 1.31|556497|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to KY963371 (Bacillus phage Carmel_SA, complete genome) position: , mismatch: 7, identity: 0.794

tttgttt---tcttttctttgattgtattttcttttt	CRISPR spacer
---gtttgaataatttctttaattttattttcttttt	Protospacer
   ****   *  *******.*** ************

93. spacer 1.31|556497|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MK448631 (Streptococcus satellite phage Javan744, complete genome) position: , mismatch: 7, identity: 0.794

tttgttttc-ttttctttgattgtattttcttttt	CRISPR spacer
-ttgtcaacactttttttgattttattttcttttt	Protospacer
 ****.  * .***.******* ************

94. spacer 1.31|556497|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MK448615 (Streptococcus satellite phage Javan728, complete genome) position: , mismatch: 7, identity: 0.794

tttgttttc-ttttctttgattgtattttcttttt	CRISPR spacer
-ttgtcaacactttttttgattttattttcttttt	Protospacer
 ****.  * .***.******* ************

95. spacer 1.31|556497|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MK448627 (Streptococcus satellite phage Javan740, complete genome) position: , mismatch: 7, identity: 0.794

tttgttttc-ttttctttgattgtattttcttttt	CRISPR spacer
-ttgtcaacactttttttgattttattttcttttt	Protospacer
 ****.  * .***.******* ************

96. spacer 1.31|556497|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MK448614 (Streptococcus satellite phage Javan727, complete genome) position: , mismatch: 7, identity: 0.794

tttgttttc-ttttctttgattgtattttcttttt	CRISPR spacer
-ttgtcaacactttttttgattttattttcttttt	Protospacer
 ****.  * .***.******* ************

97. spacer 1.31|556497|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MK448636 (Streptococcus satellite phage Javan749, complete genome) position: , mismatch: 7, identity: 0.794

tttgttttc-ttttctttgattgtattttcttttt	CRISPR spacer
-ttgtcaacactttttttgattttattttcttttt	Protospacer
 ****.  * .***.******* ************

98. spacer 1.31|556497|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MK448632 (Streptococcus satellite phage Javan745, complete genome) position: , mismatch: 7, identity: 0.794

tttgttttc-ttttctttgattgtattttcttttt	CRISPR spacer
-ttgtcaacactttttttgattttattttcttttt	Protospacer
 ****.  * .***.******* ************

99. spacer 1.31|556497|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MK448623 (Streptococcus satellite phage Javan736, complete genome) position: , mismatch: 7, identity: 0.794

tttgttttc-ttttctttgattgtattttcttttt	CRISPR spacer
-ttgtcaacactttttttgattttattttcttttt	Protospacer
 ****.  * .***.******* ************

100. spacer 1.44|557338|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MT074137 (Bacteroides phage DAC16, complete genome) position: , mismatch: 7, identity: 0.806

taaaatatataaagatggttttaatatatcagatga	CRISPR spacer
taaaatattaaaagatggttttaataaagaaaatta	Protospacer
********  **************** *  *.** *

101. spacer 1.44|557338|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MT074142 (Bacteroides phage DAC23, complete genome) position: , mismatch: 7, identity: 0.806

taaaatatataaagatggttttaatatatcagatga	CRISPR spacer
taaaatattaaaagatggttttaataaagaaaatta	Protospacer
********  **************** *  *.** *

102. spacer 1.44|557338|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MT074141 (Bacteroides phage DAC22, complete genome) position: , mismatch: 7, identity: 0.806

taaaatatataaagatggttttaatatatcagatga	CRISPR spacer
taaaatattaaaagatggttttaataaagaaaatta	Protospacer
********  **************** *  *.** *

103. spacer 1.44|557338|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MT074139 (Bacteroides phage DAC19, complete genome) position: , mismatch: 7, identity: 0.806

taaaatatataaagatggttttaatatatcagatga	CRISPR spacer
taaaatattaaaagatggttttaataaagaaaatta	Protospacer
********  **************** *  *.** *

104. spacer 1.44|557338|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MT074140 (Bacteroides phage DAC20, complete genome) position: , mismatch: 7, identity: 0.806

taaaatatataaagatggttttaatatatcagatga	CRISPR spacer
taaaatattaaaagatggttttaataaagaaaatta	Protospacer
********  **************** *  *.** *

105. spacer 1.46|557469|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017256 (Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence) position: , mismatch: 7, identity: 0.794

tttcagtattttcaactattgtattgttttcttc	CRISPR spacer
tcatatttttttcaactattgtatttttttcttt	Protospacer
*. .* * ***************** *******.

106. spacer 1.58|558252|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MH542234 (Staphylococcus phage Terranova, complete genome) position: , mismatch: 7, identity: 0.8

ccaactgtatttgatattttttcttttcttgctac	CRISPR spacer
cttaatgtatttgatattttttcttttgtttcttt	Protospacer
*. * ********************** ** ** .

107. spacer 1.58|558252|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to KP027447 (Staphylococcus phage phiIPLA-C1C, complete genome) position: , mismatch: 7, identity: 0.8

ccaactgtatttgatattttttcttttcttgctac	CRISPR spacer
cttaatgtatttgatattttttcttttgtttcttt	Protospacer
*. * ********************** ** ** .

108. spacer 1.7|554921|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MN693589 (Marine virus AFVG_25M348, complete genome) position: , mismatch: 8, identity: 0.765

--tagttatttgatgtattttttcttcgttgtacca	CRISPR spacer
cctagt--tttgatgtttattttcttcgttgtctac	Protospacer
  ****  ******** * ************* .

109. spacer 1.32|556561|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031272 (Staphylococcus caprae strain 26D plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.771

gtttttagaaagatataaaaaataattt-tatgagg	CRISPR spacer
ccctttaggaaaatataaaaaataatttatatcaa-	Protospacer
 ..*****.**.**************** *** *.

110. spacer 1.32|556561|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP051645 (Staphylococcus caprae strain SY333 plasmid pSY333-41, complete sequence) position: , mismatch: 8, identity: 0.771

gtttttagaaagatataaaaaataattt-tatgagg	CRISPR spacer
ccctttaggaaaatataaaaaataatttatatcaa-	Protospacer
 ..*****.**.**************** *** *.

111. spacer 1.46|557469|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017464 (Staphylococcus pasteuri strain JS7 plasmid pSNJS701, complete sequence) position: , mismatch: 8, identity: 0.765

tttcagtattttcaactattgtattgttttcttc	CRISPR spacer
ttattattttttcaattattgtattgtattcttt	Protospacer
** . .* *******.*********** *****.

112. spacer 1.46|557469|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 8, identity: 0.765

tttcagtattttcaactattgtattgttttcttc	CRISPR spacer
attcaatattttcaactattttattctctaaatc	Protospacer
 ****.************** **** *.*   **

113. spacer 1.4|554725|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NC_017232 (Borreliella afzelii PKo plasmid lp17, complete sequence) position: , mismatch: 9, identity: 0.75

tgaatattttttaatgtatctatatatttttgcttt	CRISPR spacer
tattttttttttaatgtatcgagatatttttggaat	Protospacer
*.  * ************** * *********   *

114. spacer 1.14|555376|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 9, identity: 0.75

attaaaattacagatggagaaaatgcaaaagaaaat	CRISPR spacer
taaaaaagaacagatggagaaaatgcaaacaaagtt	Protospacer
   ****  ******************** .**. *

115. spacer 1.14|555376|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.75

attaaaattacagatggagaaaatgcaaaagaaaat	CRISPR spacer
taaaaaagaacagatggagaaaatgcaaacaaagtt	Protospacer
   ****  ******************** .**. *

116. spacer 1.31|556497|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to AP014137 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C47-MedDCM-OCT-S35-C41, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.735

tttgttttcttttctttgattgtattttcttttt	CRISPR spacer
acttctttcttttctttaattttattttcatatg	Protospacer
 .* .************.*** ******* * *

117. spacer 1.31|556497|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to KY963370 (Bacillus phage Negev_SA, complete genome) position: , mismatch: 9, identity: 0.735

tttgttttcttttctttgattgtattttcttttt	CRISPR spacer
gtttgtagaatttctttaattttattttcttttt	Protospacer
 **  *    *******.*** ************

118. spacer 1.31|556497|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MF417893 (Uncultured Caudovirales phage clone 9AX_2, partial genome) position: , mismatch: 9, identity: 0.735

tttgttttcttttctttgattgtattttcttttt	CRISPR spacer
gtttgtagaatttctttaattttattttcttttt	Protospacer
 **  *    *******.*** ************

119. spacer 1.31|556497|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to KY963369 (Bacillus phage Tavor_SA, complete genome) position: , mismatch: 9, identity: 0.735

tttgttttcttttctttgattgtattttcttttt	CRISPR spacer
gtttgtagaatttctttaattttattttcttttt	Protospacer
 **  *    *******.*** ************

120. spacer 1.31|556497|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to AP014376 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S42-C64, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.735

tttgttttcttttctttgattgtattttcttttt	CRISPR spacer
tcgtttgaaatttctttgattgtattctcttatt	Protospacer
*.  **    ****************.**** **

121. spacer 1.32|556561|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP018901 (Campylobacter coli strain YH502 plasmid pCOS502, complete sequence) position: , mismatch: 9, identity: 0.743

gtttttagaaagatataaaaaataattttatgagg	CRISPR spacer
gtttttagaaatatataaaaaattattaaaaatat	Protospacer
*********** *********** ***  * . .

122. spacer 1.32|556561|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP018901 (Campylobacter coli strain YH502 plasmid pCOS502, complete sequence) position: , mismatch: 9, identity: 0.743

gtttttagaaagatataaaaaataattttatgagg	CRISPR spacer
gtttttagaaatatataaaaaattattaaaaatat	Protospacer
*********** *********** ***  * . .

123. spacer 1.32|556561|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP040614 (Campylobacter sp. CFSAN093246 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.743

gtttttagaaagatataaaaaataattttatgagg	CRISPR spacer
gtttttagaaatatataaaaaattattaaaaatat	Protospacer
*********** *********** ***  * . .

124. spacer 1.32|556561|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP048772 (Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence) position: , mismatch: 9, identity: 0.743

gtttttagaaagatataaaaaataattttatgagg	CRISPR spacer
gtttttagaaatatataaaaaattattaaaaatat	Protospacer
*********** *********** ***  * . .

125. spacer 1.32|556561|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP044166 (Campylobacter coli strain AR-0416 plasmid pAR-0416) position: , mismatch: 9, identity: 0.743

gtttttagaaagatataaaaaataattttatgagg	CRISPR spacer
gtttttagaaatatataaaaaattattaaaaatat	Protospacer
*********** *********** ***  * . .

126. spacer 1.32|556561|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP044166 (Campylobacter coli strain AR-0416 plasmid pAR-0416) position: , mismatch: 9, identity: 0.743

gtttttagaaagatataaaaaataattttatgagg	CRISPR spacer
gtttttagaaatatataaaaaattattaaaaatat	Protospacer
*********** *********** ***  * . .

127. spacer 1.32|556561|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP044166 (Campylobacter coli strain AR-0416 plasmid pAR-0416) position: , mismatch: 9, identity: 0.743

gtttttagaaagatataaaaaataattttatgagg	CRISPR spacer
gtttttagaaatatataaaaaattattaaaaatat	Protospacer
*********** *********** ***  * . .

128. spacer 1.32|556561|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025282 (Campylobacter coli strain YH503 plasmid pCOS503, complete sequence) position: , mismatch: 9, identity: 0.743

gtttttagaaagatataaaaaataattttatgagg	CRISPR spacer
gtttttagaaatatataaaaaattattaaaaatat	Protospacer
*********** *********** ***  * . .

129. spacer 1.32|556561|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP044174 (Campylobacter jejuni strain AR-0412 plasmid pAR-0412, complete sequence) position: , mismatch: 9, identity: 0.743

gtttttagaaagatataaaaaataattttatgagg	CRISPR spacer
gtttttagaaatatataaaaaattattaaaaatat	Protospacer
*********** *********** ***  * . .

130. spacer 1.45|557404|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MT460516 (Vibrio phage Quinn, complete genome) position: , mismatch: 9, identity: 0.743

gaaatagttaaaagcgtacaagcaacagggaaata	CRISPR spacer
caaatagttaagagcgtacaaccaacagccagtgg	Protospacer
 **********.********* ******  *.  .

131. spacer 1.45|557404|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MT460515 (Vibrio phage Cody, complete genome) position: , mismatch: 9, identity: 0.743

gaaatagttaaaagcgtacaagcaacagggaaata	CRISPR spacer
caaatagttaagagcgtacaaccaacagccagtgg	Protospacer
 **********.********* ******  *.  .

132. spacer 1.45|557404|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MK895508 (Vibrio phage Brizo, complete genome) position: , mismatch: 9, identity: 0.743

gaaatagttaaaagcgtacaagcaacagggaaata	CRISPR spacer
caaatagttaagagcgtacaaccaacagccagtgg	Protospacer
 **********.********* ******  *.  .

133. spacer 1.49|557666|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP047096 (Bacillus marisflavi strain 151-25 plasmid p25, complete sequence) position: , mismatch: 9, identity: 0.735

ttagaggatataaaacataaataaataaaatcaa	CRISPR spacer
tagatagatataaaacataaaaaaattaaattat	Protospacer
* .. .*************** **** ****.*

134. spacer 1.49|557666|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP019365 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence) position: , mismatch: 9, identity: 0.735

ttagaggat-----ataaaacataaataaataaaatcaa	CRISPR spacer
-----gaattattaataaaacataactaaataaagtcat	Protospacer
     *.**     *********** ********.***

135. spacer 1.49|557666|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP019365 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence) position: , mismatch: 9, identity: 0.735

ttagaggat-----ataaaacataaataaataaaatcaa	CRISPR spacer
-----gaattattaataaaacataactaaataaagtcat	Protospacer
     *.**     *********** ********.***

136. spacer 1.49|557666|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP019368 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpT39, complete sequence) position: , mismatch: 9, identity: 0.735

ttagaggat-----ataaaacataaataaataaaatcaa	CRISPR spacer
-----gaattattaataaaacataactaaataaagtcat	Protospacer
     *.**     *********** ********.***

137. spacer 1.49|557666|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP024444 (Moraxella osloensis strain NP7 plasmid pNP7-1, complete sequence) position: , mismatch: 9, identity: 0.735

ttagaggata----taaaacataaataaataaaatcaa	CRISPR spacer
----aaaacacgcttaaaaaataaataaattaaatcaa	Protospacer
    *..*.*    ***** ********** *******

138. spacer 1.49|557666|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP026129 (Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence) position: , mismatch: 9, identity: 0.735

ttagaggata----taaaacataaataaataaaatcaa	CRISPR spacer
----aaaacacgcttaaaaaataaataaattaaatcaa	Protospacer
    *..*.*    ***** ********** *******

139. spacer 1.49|557666|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP010090 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence) position: , mismatch: 9, identity: 0.735

ttagaggatataaaacataaataaataaaatcaa	CRISPR spacer
cttcattaaattaaacataaatacataaaatcac	Protospacer
.*  *  * ** *********** *********

140. spacer 1.49|557666|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015632 (Borrelia turicatae strain BTE5EL plasmid lp30) position: , mismatch: 9, identity: 0.735

ttagaggatataaaacataaataaataaaatcaa	CRISPR spacer
atttaaactttaaaaaataaataaataaaaacaa	Protospacer
 *  *.. * ***** ************** ***

141. spacer 1.49|557666|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015632 (Borrelia turicatae strain BTE5EL plasmid lp30) position: , mismatch: 9, identity: 0.735

ttagaggat-----ataaaacataaataaataaaatcaa	CRISPR spacer
-----gaattattaataaaacataactaaataaagtcat	Protospacer
     *.**     *********** ********.***

142. spacer 1.49|557666|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015633 (Borrelia turicatae strain BTE5EL plasmid lp31) position: , mismatch: 9, identity: 0.735

ttagaggat-----ataaaacataaataaataaaatcaa	CRISPR spacer
-----gaattattaataaaacataactaaataaagtcat	Protospacer
     *.**     *********** ********.***

143. spacer 1.49|557666|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015634 (Borrelia turicatae strain BTE5EL plasmid lp40) position: , mismatch: 9, identity: 0.735

ttagaggat-----ataaaacataaataaataaaatcaa	CRISPR spacer
-----gaattatcaataaaacataattaaataaagtcat	Protospacer
     *.**     *********** ********.***

144. spacer 1.49|557666|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015634 (Borrelia turicatae strain BTE5EL plasmid lp40) position: , mismatch: 9, identity: 0.735

ttagaggat-----ataaaacataaataaataaaatcaa	CRISPR spacer
-----gaattattaataaaacataactaaataaagtcat	Protospacer
     *.**     *********** ********.***

145. spacer 1.49|557666|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015635 (Borrelia turicatae strain BTE5EL plasmid lp44) position: , mismatch: 9, identity: 0.735

ttagaggat-----ataaaacataaataaataaaatcaa	CRISPR spacer
-----gaattattaataaaacataactaaataaagtcat	Protospacer
     *.**     *********** ********.***

146. spacer 1.49|557666|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP014853 (Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence) position: , mismatch: 9, identity: 0.735

ttagaggatataaaacataaataaataaaatcaa	CRISPR spacer
cttcattaaattaaacataaatacataaaatcac	Protospacer
.*  *  * ** *********** *********

147. spacer 1.49|557666|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015636 (Borrelia turicatae strain BTE5EL plasmid lp48) position: , mismatch: 9, identity: 0.735

ttagaggat-----ataaaacataaataaataaaatcaa	CRISPR spacer
-----gaattattaataaaacataactaaataaagtcat	Protospacer
     *.**     *********** ********.***

148. spacer 1.31|556497|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP009064 (Borreliella afzelii K78 plasmid lp28-3, complete sequence) position: , mismatch: 10, identity: 0.706

tttgttttcttttctttgattgtattttcttttt	CRISPR spacer
aaagtagatgtttctttgcttgttttttcttttt	Protospacer
   **   . ******** **** **********

149. spacer 1.31|556497|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NC_017233 (Borreliella afzelii PKo plasmid lp28-3, complete sequence) position: , mismatch: 10, identity: 0.706

tttgttttcttttctttgattgtattttcttttt	CRISPR spacer
aaagtagatgtttctttgcttgttttttcttttt	Protospacer
   **   . ******** **** **********

150. spacer 1.32|556561|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP048111 (Klebsiella michiganensis strain BD177 plasmid unnamed3) position: , mismatch: 10, identity: 0.714

gtttttagaaagatataaaaaataattttatgagg	CRISPR spacer
aaatatcaggagatatacaaaataattgtatgagg	Protospacer
.  * * ...******* ********* *******

151. spacer 1.38|556950|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 10, identity: 0.706

aaattcaatctactaaaagcaaatgatatatata	CRISPR spacer
gctagcaataaactaaaagcaaatgatattaaaa	Protospacer
.    ****  ******************  * *

152. spacer 1.43|557274|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to AP014390 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S44-C9, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.706

aactagctaaaagtatagcagatgcaagtttctt	CRISPR spacer
caatagctaatagtaaagcagatgcaaatagtaa	Protospacer
 * ******* **** ***********.*  .

153. spacer 1.46|557469|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NC_007390 (Spiroplasma citri pSci4 plasmid) position: , mismatch: 10, identity: 0.706

tttcagtattttcaactattgtattgttttcttc	CRISPR spacer
tagataaatttttaactattttattgttttctga	Protospacer
*    . *****.******* ***********

154. spacer 1.46|557469|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031090 (Spiroplasma phoeniceum P40 plasmid pSPh387, complete sequence) position: , mismatch: 10, identity: 0.706

tttcagtattttcaactattgtattgttttcttc	CRISPR spacer
tagataaatttttaactattttattgttttctga	Protospacer
*    . *****.******* ***********

155. spacer 1.46|557469|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MH617194 (Microviridae sp. isolate ctbf575, complete genome) position: , mismatch: 10, identity: 0.706

tttcagtattttcaactattgtattgttttcttc	CRISPR spacer
cgtctatattttcaattattgtattgtatttcat	Protospacer
. ** .*********.*********** **.. .

156. spacer 1.49|557666|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MK275621 (Clostridium perfringens strain JXJA17 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.706

ttagaggatataaaacataaataaataaaatcaa	CRISPR spacer
aagttgaatataaaacataaataattaatatata	Protospacer
  .  *.***************** *** **  *

157. spacer 1.54|557989|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP009118 (Borreliella valaisiana Tom4006 plasmid cp26, complete sequence) position: , mismatch: 10, identity: 0.714

cataaagaaacattaaatattataataaagttaag	CRISPR spacer
ataaaagaaacattaaatataatattaagtccaaa	Protospacer
   ***************** *** ***. ..**.

158. spacer 1.4|554725|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP009061 (Borreliella afzelii K78 plasmid lp17, complete sequence) position: , mismatch: 11, identity: 0.694

tgaatattttttaatgtatctatatatttttgcttt	CRISPR spacer
atttctttttttaatgtatcgagatatttttggaat	Protospacer
    . ************** * *********   *

159. spacer 1.4|554725|36|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP042833 (Enterococcus faecium strain FA3 plasmid unnamed1) position: , mismatch: 11, identity: 0.694

tgaatattttttaatgtatctatatatttttgcttt	CRISPR spacer
aatttatttttaaatgtatatatatattttcattaa	Protospacer
 .  ******* ******* **********...*

160. spacer 1.7|554921|34|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015631 (Borrelia turicatae strain BTE5EL plasmid lp24) position: , mismatch: 11, identity: 0.676

tagttatttgatgtattttttcttcgttgtacca	CRISPR spacer
taattatttgatgtattgtttcttttgaattttt	Protospacer
**.************** ******.   .* ..

161. spacer 1.21|555839|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to MK886800 (Escherichia phage EcNP1, complete genome) position: , mismatch: 11, identity: 0.686

agtgatagtaattcaaacagttctagtgcttcggt	CRISPR spacer
gtcatgagtaattcaaacagttcacgtgctttaat	Protospacer
. ..  *****************  ******...*

162. spacer 1.32|556561|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NC_018141 (Legionella pneumophila subsp. pneumophila plasmid pLELO, complete sequence) position: , mismatch: 11, identity: 0.686

gtttttagaaagatataaaaaataattttatgagg	CRISPR spacer
ttcattaaaaagagataaaaaataattttcaatct	Protospacer
 *. ***.***** ***************  .

163. spacer 1.32|556561|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025492 (Legionella sainthelensi strain LA01-117 plasmid pLA01-117_150k, complete sequence) position: , mismatch: 11, identity: 0.686

gtttttagaaagatataaaaaataattttatgagg	CRISPR spacer
ttcattaaaaagagataaaaaataattttcaatct	Protospacer
 *. ***.***** ***************  .

164. spacer 1.32|556561|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021284 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.686

gtttttagaaagatataaaaaataattttatgagg	CRISPR spacer
ttcattaaaaagagataaaaaataattttcaatct	Protospacer
 *. ***.***** ***************  .

165. spacer 1.32|556561|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP011106 (Legionella pneumophila strain L10-023 isolate Ulm plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.686

gtttttagaaagatataaaaaataattttatgagg	CRISPR spacer
ttcattaaaaagagataaaaaataattttcaatct	Protospacer
 *. ***.***** ***************  .

166. spacer 1.32|556561|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP045305 (Legionella longbeachae strain B1445CHC plasmid pB1445CHC_150k, complete sequence) position: , mismatch: 11, identity: 0.686

gtttttagaaagatataaaaaataattttatgagg	CRISPR spacer
ttcattaaaaagagataaaaaataattttcaatct	Protospacer
 *. ***.***** ***************  .

167. spacer 1.32|556561|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP042253 (Legionella longbeachae strain B3526CHC plasmid pB3526CHC_150k, complete sequence) position: , mismatch: 11, identity: 0.686

gtttttagaaagatataaaaaataattttatgagg	CRISPR spacer
ttcattaaaaagagataaaaaataattttcaatct	Protospacer
 *. ***.***** ***************  .

168. spacer 1.54|557989|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to CP009911 (Borreliella chilensis strain VA1 plasmid cp26, complete sequence) position: , mismatch: 12, identity: 0.657

cataaagaaacattaaatattataataaagttaag	CRISPR spacer
ataaaagaaacattaaatattgtattaagtcccca	Protospacer
   ******************.** ***. ..  .

169. spacer 1.58|558252|35|NZ_CP013353|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP034238 (Aliivibrio salmonicida strain VS224 plasmid pRVS1-224, complete sequence) position: , mismatch: 12, identity: 0.657

ccaactgtatttgatattttttcttttcttgctac	CRISPR spacer
tttttcctattagatattttttcgtttcttgcatg	Protospacer
..  .. **** *********** ********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

567651 : 662212

108

Clostridium_phage(32.0%)

tail,protease,plate,transposase,capsid,portal,integrase

attL 619917:619934|attR 663381:663398

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_125390909.1\|567651_568675_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_058372112.1\|568785_569085_+	hypothetical protein	NA	NA	NA	NA
WP_064062221.1\|569246_570065_-	EcsC family protein	NA	NA	NA	NA
WP_058372113.1\|570771_571749_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_058372114.1\|571857_573168_-	sensor histidine kinase	X5JAC0	Clostridium_phage	1.5e-17	30.4
WP_002581243.1\|573179_573890_-	response regulator transcription factor	A0A2R2ZGH8	Clostridioides_phage	3.7e-31	37.5
WP_058372115.1\|574061_576656_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_003413325.1\|576655_577342_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-33	38.6
WP_043665323.1\|577425_578415_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_043665328.1\|578401_579088_-	response regulator transcription factor	NA	NA	NA	NA
WP_058372116.1\|579594_580620_-	arabinogalactan endo-1,4-beta-galactosidase	NA	NA	NA	NA
WP_043853920.1\|581032_582031_-	cellulase family glycosylhydrolase	NA	NA	NA	NA
WP_043853744.1\|582343_584407_-	beta-galactosidase	NA	NA	NA	NA
WP_058372117.1\|584580_586125_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_058372118.1\|586361_587900_-	DUF3502 domain-containing protein	NA	NA	NA	NA
WP_035764313.1\|588097_588988_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_081044150.1\|589103_590084_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_058372119.1\|590319_591861_+	response regulator	Q6XM27	Feldmannia_irregularis_virus	4.0e-06	30.9
WP_080775817.1\|591772_593632_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	5.3e-21	28.4
WP_003413637.1\|593687_594377_+	DUF624 domain-containing protein	NA	NA	NA	NA
WP_058372120.1\|594583_595027_-	hypothetical protein	NA	NA	NA	NA
WP_058372121.1\|595226_595778_-	hemerythrin	NA	NA	NA	NA
WP_058372123.1\|597218_597536_-	hypothetical protein	NA	NA	NA	NA
WP_058372124.1\|597532_597769_-	hypothetical protein	NA	NA	NA	NA
WP_058372125.1\|597863_598067_-	hypothetical protein	NA	NA	NA	NA
WP_058372126.1\|598051_598924_-	ParM/StbA family protein	Q0SPH6	Clostridium_phage	4.5e-23	29.7
WP_125390915.1\|599056_599227_-	helix-turn-helix transcriptional regulator	A0A2H4J765	uncultured_Caudovirales_phage	1.3e-11	64.3
WP_058372128.1\|599353_599878_+	hypothetical protein	NA	NA	NA	NA
WP_003432416.1\|600273_600474_-	alpha/beta-type small acid-soluble spore protein	Q77YX0	Bacillus_phage	2.8e-05	42.2
WP_125390911.1\|600644_601364_-	hypothetical protein	A0A0A7S0U2	Clostridium_phage	1.5e-24	35.8
WP_058372130.1\|601363_601726_-	hypothetical protein	NA	NA	NA	NA
WP_058372131.1\|601676_602744_-	hypothetical protein	NA	NA	NA	NA
WP_003414383.1\|603049_603229_-	hypothetical protein	A0A2H4J069	uncultured_Caudovirales_phage	3.6e-12	75.0
WP_058372132.1\|603688_605311_-	hypothetical protein	I3VYU6	Thermoanaerobacterium_phage	7.4e-19	33.1
WP_058372133.1\|605361_605685_-	hypothetical protein	NA	NA	NA	NA
WP_035763532.1\|605702_605915_-	hemolysin XhlA	NA	NA	NA	NA
WP_058372134.1\|606208_606508_-	hypothetical protein	NA	NA	NA	NA
WP_058372136.1\|607529_608147_-	YmfQ family protein	A0A0A7RTU9	Clostridium_phage	4.4e-41	40.2
WP_064062222.1\|608147_610040_-	hypothetical protein	A0A0A7S1G0	Clostridium_phage	1.5e-26	57.9
WP_058372137.1\|610040_611168_-\|plate	baseplate J/gp47 family protein	A0A2H4J7K8	uncultured_Caudovirales_phage	2.1e-52	36.2
WP_045144373.1\|611174_611612_-	DUF2634 domain-containing protein	A0A2H4J4Q8	uncultured_Caudovirales_phage	2.3e-23	43.4
WP_058372138.1\|611604_611949_-	hypothetical protein	A0A0A8WFG6	Clostridium_phage	2.6e-14	42.7
WP_058372223.1\|611938_612916_-	hypothetical protein	A0A2H4J063	uncultured_Caudovirales_phage	6.3e-74	47.4
WP_058372139.1\|612964_613531_-	hypothetical protein	L0P6F5	Lactobacillus_phage	9.1e-33	37.6
WP_081044151.1\|613624_613786_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_058372140.1\|613795_614278_-	hypothetical protein	NA	NA	NA	NA
WP_058372141.1\|614648_615488_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_058372142.1\|615525_619290_-\|tail	phage tail tape measure protein	A0A2H4J055	uncultured_Caudovirales_phage	1.2e-85	33.2
WP_058372143.1\|619493_619988_-	XkdN	A0A2H4J883	uncultured_Caudovirales_phage	1.7e-19	39.7
619917:619934	attL	NA	NA	NA	NA
WP_003432463.1\|620020_620440_-\|tail	phage tail tube protein	A0A2H4J032	uncultured_Caudovirales_phage	1.2e-42	61.8
WP_058372144.1\|620457_621897_-\|tail	phage tail sheath protein	B6SBT7	Clostridium_virus	1.8e-109	46.0
WP_027635367.1\|621896_622130_-	hypothetical protein	NA	NA	NA	NA
WP_058372145.1\|622145_622967_-	hypothetical protein	A0A2H4J4Q0	uncultured_Caudovirales_phage	2.1e-83	53.1
WP_002581889.1\|622970_623396_-	hypothetical protein	A0A2H4J736	uncultured_Caudovirales_phage	1.5e-24	44.8
WP_058372146.1\|623400_623784_-	hypothetical protein	A0A2H4J057	uncultured_Caudovirales_phage	4.0e-32	51.6
WP_003432470.1\|623783_624104_-	hypothetical protein	A0A2H4J040	uncultured_Caudovirales_phage	4.7e-26	56.4
WP_058372147.1\|624106_624358_-	hypothetical protein	NA	NA	NA	NA
WP_058372148.1\|624414_625470_-\|capsid	phage capsid protein	D9ZND6	Clostridium_phage	2.0e-86	49.7
WP_058372149.1\|625486_625891_-	hypothetical protein	NA	NA	NA	NA
WP_058372150.1\|625919_626546_-\|capsid	phage capsid protein	A0A0K2CP96	Brevibacillus_phage	5.2e-13	35.0
WP_081044152.1\|626859_627168_-	hypothetical protein	NA	NA	NA	NA
WP_003432485.1\|629638_631183_-\|portal	phage portal protein	D9ZNC8	Clostridium_phage	1.7e-137	51.7
WP_058372153.1\|632561_633209_-	hypothetical protein	A0A2R4P8H7	Staphylococcus_phage	2.6e-52	46.3
WP_058372155.1\|633764_634715_-\|portal	phage portal protein	A0A0A7RTY1	Clostridium_phage	2.3e-44	40.5
WP_058372156.1\|635010_635199_-	hypothetical protein	NA	NA	NA	NA
WP_058372157.1\|635320_635626_-	hypothetical protein	NA	NA	NA	NA
WP_058372158.1\|635981_636554_-	hypothetical protein	NA	NA	NA	NA
WP_058372159.1\|636609_637131_-	hypothetical protein	A0A0A7RVS1	Clostridium_phage	2.1e-15	34.3
WP_058372160.1\|637246_637501_-	hypothetical protein	NA	NA	NA	NA
WP_058372161.1\|637484_637817_-	hypothetical protein	NA	NA	NA	NA
WP_155594188.1\|637813_637984_-	hypothetical protein	NA	NA	NA	NA
WP_058372162.1\|637986_638286_-	hypothetical protein	NA	NA	NA	NA
WP_033127229.1\|638300_639302_-\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	4.3e-17	28.9
WP_058372163.1\|639553_639763_-	hypothetical protein	NA	NA	NA	NA
WP_155594189.1\|640429_640570_-	hypothetical protein	NA	NA	NA	NA
WP_058372164.1\|640598_641210_-	hypothetical protein	A0A2H4J8I2	uncultured_Caudovirales_phage	2.0e-33	39.5
WP_058372165.1\|641233_641503_-	hypothetical protein	NA	NA	NA	NA
WP_058372166.1\|641525_642245_-	hypothetical protein	A0A1L2BY85	Clostridium_phage	3.2e-30	36.3
WP_058372167.1\|642288_642477_-	hypothetical protein	NA	NA	NA	NA
WP_045144349.1\|642481_642886_-	RusA family crossover junction endodeoxyribonuclease	J9QE82	Clostridium_phage	5.3e-19	40.8
WP_058372168.1\|642974_643280_-	hypothetical protein	NA	NA	NA	NA
WP_045144347.1\|643295_643571_-	hypothetical protein	NA	NA	NA	NA
WP_058372169.1\|643571_644648_-	DUF3102 domain-containing protein	A0A2H4J025	uncultured_Caudovirales_phage	4.6e-17	43.4
WP_058372170.1\|644648_646238_-	hypothetical protein	A0A2H4J8D4	uncultured_Caudovirales_phage	5.1e-73	37.5
WP_058372171.1\|646251_646653_-	hypothetical protein	A0A2H4J073	uncultured_Caudovirales_phage	3.7e-12	35.4
WP_003406460.1\|646692_647037_-	hypothetical protein	A0A0A7RTL9	Clostridium_phage	1.0e-23	52.6
WP_058372172.1\|647014_647251_-	hypothetical protein	NA	NA	NA	NA
WP_058372173.1\|647247_647595_-	hypothetical protein	NA	NA	NA	NA
WP_058372174.1\|647610_648417_-	DNA replication protein	A0A1B1P7U2	Bacillus_phage	4.2e-31	33.5
WP_058372175.1\|648358_649201_-	DnaD domain protein	C5J987	Streptococcus_phage	1.4e-29	39.3
WP_058372176.1\|649354_650068_-	MBL fold metallo-hydrolase	A0A1L2JY21	Aeribacillus_phage	1.1e-51	43.9
WP_058372177.1\|650067_650958_-	recombinase RecT	A0A1L2JY28	Aeribacillus_phage	6.8e-51	42.4
WP_058372178.1\|650961_651147_-	hypothetical protein	NA	NA	NA	NA
WP_058372179.1\|651146_653117_-	AAA family ATPase	S0A069	Cellulophaga_phage	2.3e-75	33.3
WP_058372180.1\|653590_653806_-	hypothetical protein	NA	NA	NA	NA
WP_058372181.1\|653819_654347_-	hypothetical protein	NA	NA	NA	NA
WP_058372182.1\|654354_654597_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A0K2CZ86	Paenibacillus_phage	3.8e-20	56.4
WP_033127217.1\|654613_654814_-	hypothetical protein	NA	NA	NA	NA
WP_003432559.1\|654880_655105_+	hypothetical protein	NA	NA	NA	NA
WP_058372183.1\|655074_655647_-	hypothetical protein	NA	NA	NA	NA
WP_003432570.1\|655962_656262_-	hypothetical protein	NA	NA	NA	NA
WP_058372184.1\|656265_656550_-	hypothetical protein	NA	NA	NA	NA
WP_081044156.1\|656551_657334_-	phage antirepressor protein	A0A0A7RW33	Clostridium_phage	1.7e-66	52.3
WP_058372186.1\|657361_657577_-	hypothetical protein	NA	NA	NA	NA
WP_058372187.1\|657767_658286_+	helix-turn-helix transcriptional regulator	Q8SBN0	Clostridium_phage	1.2e-34	53.5
WP_058372188.1\|658306_658792_+	ImmA/IrrE family metallo-endopeptidase	A0A0A7RTX7	Clostridium_phage	1.1e-21	42.6
WP_058372189.1\|658818_659901_+\|integrase	site-specific integrase	A0A1P8VVR7	Streptococcus_phage	1.9e-23	29.8
WP_058141644.1\|660832_662212_-\|transposase	IS5 family transposase	NA	NA	NA	NA
663381:663398	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013352

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013353

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection