CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013653	Paenibacillus sp. 32O-W chromosome, complete genome	18 crisprs	cas3,DEDDh,csa3,WYL,RT,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,PD-DExK,cas5,cas8c,cas7,cas1,cas2,DinG,cas8b3,cas6	6	14	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013653_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013653_2

1155152-1155270

Orphan

Consensus_repeat	Method
TGCGAACCGATGTCGTCTGTGACAGCCCAAGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013653_2

>merge|NZ_CP013653|2|1155152-1155270|CRISPRCasFinder
TGCGAACCGATGTCGTCTGTGACAGCCCAAGCGGACCATTCCAACGGGCCAAGGAGCGGCTGGTAACAGTCGGGCGCGTTTTGCCTGCGAACCGATGTCGTCTGTGACAGCCCAAGCGG

>NZ_CP013653|2|1|1155152-1155270|CRISPRCasFinder
TGCGAACCGATGTCGTCTGTGACAGCCCAAGCGG	ACCATTCCAACGGGCCAAGGAGCGGCTGGTAACAGTCGGGCGCGTTTTGCC
TGCGAACCGATGTCGTCTGTGACAGCCCAAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013653.1\|WP_082655072.1\|1157189_1165505_+\|glycosyl-transferase-family-36	unknown	unknown	gnl\|CDD\|225990
NZ_CP013653.1\|WP_062491006.1\|1145094_1146027_-\|1-phosphofructokinase-family-hexose-kinase	unknown	unknown	gnl\|CDD\|224030
NZ_CP013653.1\|WP_062491003.1\|1142101_1142848_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371444
NZ_CP013653.1\|WP_082655073.1\|1172787_1173765_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP013653.1\|WP_062491004.1\|1143398_1145054_-\|DUF4091-domain-containing-protein	unknown	unknown	gnl\|CDD\|379121
NZ_CP013653.1\|WP_062491015.1\|1150917_1152831_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP013653.1\|WP_062496541.1\|1173811_1174702_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP013653.1\|WP_062491009.1\|1147928_1148987_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225132
NZ_CP013653.1\|WP_082655519.1\|1169403_1171284_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NZ_CP013653.1\|WP_062496539.1\|1146902_1147883_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP013653.1\|WP_160327762.1\|1155272_1155620_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062491013.1\|1150235_1150664_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293766
NZ_CP013653.1\|WP_062491011.1\|1149162_1150239_-\|phosphodiester-glycosidase-family-protein	unknown	unknown	gnl\|CDD\|378342
NZ_CP013653.1\|WP_062491017.1\|1153244_1154657_+\|phytanoyl-CoA-dioxygenase	unknown	unknown	gnl\|CDD\|224331
NZ_CP013653.1\|WP_062491023.1\|1166679_1167567_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP013653.1\|WP_062491025.1\|1167616_1169305_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270300
NZ_CP013653.1\|WP_062491031.1\|1171286_1172894_+\|response-regulator	unknown	unknown	gnl\|CDD\|381091
NZ_CP013653.1\|WP_062491007.1\|1146033_1146900_-\|class-II-fructose-1,6-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|376459
NZ_CP013653.1\|WP_145977322.1\|1165683_1166658_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226666
NZ_CP013653.1\|WP_062491020.1\|1156057_1157041_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|184456

Protein	Function_ID	Function_description	E-value
NZ_CP013653.1\|WP_082655072.1\|1157189_1165505_+\|glycosyl-transferase-family-36	gnl\|CDD\|225990	COG3459, COG3459, Cellobiose phosphorylase [Carbohydrate transport and metabolism].	0
NZ_CP013653.1\|WP_062491006.1\|1145094_1146027_-\|1-phosphofructokinase-family-hexose-kinase	gnl\|CDD\|224030	COG1105, FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism].	7.39077e-99
NZ_CP013653.1\|WP_062491020.1\|1156057_1157041_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|184456	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB.	9.21831e-114
NZ_CP013653.1\|WP_082655073.1\|1172787_1173765_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.31028e-20
NZ_CP013653.1\|WP_062491004.1\|1143398_1145054_-\|DUF4091-domain-containing-protein	gnl\|CDD\|379121	pfam13320, DUF4091, Domain of unknown function (DUF4091). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 70 amino acids in length. There is a single completely conserved residue G that may be functionally important.	9.45637e-25
NZ_CP013653.1\|WP_062491015.1\|1150917_1152831_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.86754e-43
NZ_CP013653.1\|WP_062496541.1\|1173811_1174702_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	6.39554e-27
NZ_CP013653.1\|WP_062491009.1\|1147928_1148987_-\|SIS-domain-containing-protein	gnl\|CDD\|225132	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane].	9.12463e-60
NZ_CP013653.1\|WP_082655519.1\|1169403_1171284_+\|sensor-histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	2.30085e-48
NZ_CP013653.1\|WP_062496539.1\|1146902_1147883_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.5814e-65
NZ_CP013653.1\|WP_062491013.1\|1150235_1150664_-\|hypothetical-protein	gnl\|CDD\|293766	cd16147, G6S, glucosamine (N-acetyl)-6-sulfatase(G6S, GNS) AND sulfatase 1(SULF1). N-acetylglucosamine-6-sulfatase also known as glucosamine (N-acetyl)-6-sulfatase hydrolyzes of the 6-sulfate groups of the N-acetyl-D-glucosamine 6-sulfate units of heparan sulfate and keratan sulfate. Deficient of N-acetylglucosamine-6-sulfatase results in disease of Sanfilippo Syndrome type IIId or Mucopolysaccharidosis III (MPS-III), a rare autosomal recessive lysosomal storage disease. SULF1 encodes an extracellular heparan sulfate endosulfatase, that removes 6-O-sulfate groups from heparan sulfate chains of heparan sulfate proteoglycans (HSPGs).	0.0013067
NZ_CP013653.1\|WP_062491011.1\|1149162_1150239_-\|phosphodiester-glycosidase-family-protein	gnl\|CDD\|378342	pfam09992, NAGPA, Phosphodiester glycosidase. This is a family conserved from bacteria to humans. The structure of a member from Bacteroides has been crystallized and modelled onto the luminal region of the human member of the family, the transmembrane glycoprotein N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. There is some conservation of potentially functional residues, implying that in the bacterial members this family acts in some way as a phosphodiester glycosidase. The human protein is also present, so the eukaryotic members are likely to be catalyzing the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides.	6.0804e-41
NZ_CP013653.1\|WP_062491017.1\|1153244_1154657_+\|phytanoyl-CoA-dioxygenase	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	1.10468e-20
NZ_CP013653.1\|WP_062491003.1\|1142101_1142848_-\|hypothetical-protein	gnl\|CDD\|371444	pfam11271, DUF3068, Protein of unknown function (DUF3068). Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.	0.000750969
NZ_CP013653.1\|WP_062491023.1\|1166679_1167567_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	8.04379e-57
NZ_CP013653.1\|WP_062491025.1\|1167616_1169305_+\|extracellular-solute-binding-protein	gnl\|CDD\|270300	cd13582, PBP2_AlgQ_like_3, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold. This subgroup includes uncharacterized periplasmic-binding proteins that are closely related to high molecular weight (HMW) alginate bining proteins (AlgQ1 and AlgQ2) found in gram-negative soil bacteria. The HMW alginate uptake system is composed of a novel pit formed on the cell surface and a pit-dependent ATP-binding cassette (ABC) transporter in the inner membrane. The transportation of HMW alginate from the pit to the ABC transporter is mediated by periplasmic HMW alginate-binding proteins (AlgQ1 and AlgQ2). Alginate is an anionic polysaccharide that is made up of alpha-L-mannuronate and its 5'-epimer, alpha-L-guluronate. Alginate is present in the cell walls of brown seaweeds, where it forms a viscous gum by binding water. Alginate is also produced by two bacteria genera Pseudomonas and Azotobacter. AlgQ1 and AlgQ2 belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. However, unlike other bacterial periplasmic-binding proteins that deliver small solutes to ABC transporters, AlgQ1/2 can bind a macromolecule and may have specificity for either sugar or a certain type of polysaccharide.	2.19466e-70
NZ_CP013653.1\|WP_062491031.1\|1171286_1172894_+\|response-regulator	gnl\|CDD\|381091	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators. This family is composed of uncharacterized response regulators that contain a REC domain and a AraC family helix-turn-helix (HTH) DNA-binding output domain, including Bacillus subtilis uncharacterized transcriptional regulatory protein YesN and Staphylococcus aureus uncharacterized response regulatory protein SAR0214. YesN is a member of the two-component regulatory system YesM/YesN and SAR0214 is a member of the probable two-component regulatory system SAR0215/SAR0214. Also included in this family is the AlgR-like group of LytTR/AlgR family response, which includes Pseudomonas aeruginosa positive alginate biosynthesis regulatory protein AlgR and Bacillus subtilis sensory transduction protein LytT, among others. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.68885e-51
NZ_CP013653.1\|WP_062491007.1\|1146033_1146900_-\|class-II-fructose-1,6-bisphosphate-aldolase	gnl\|CDD\|376459	pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II.	6.78987e-142
NZ_CP013653.1\|WP_145977322.1\|1165683_1166658_+\|ABC-transporter-permease-subunit	gnl\|CDD\|226666	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].	8.84456e-121

>NZ_CP013653.1|WP_062491017.1|1153244_1154657_+|phytanoyl-CoA-dioxygenase
MNGQTPVLLTDDQMRQFITEGFLILKTDFSKQFHQELLQELNEVYEKEGNPGNNLLPRIRGLRKVFDHPVIRGGLTSVLGPDYMLHTHRHGHYNSSPQAGGWHKDSYWGYSRVRNHHPWWAMIMYFPQDTPPELGPTGIMPGTQNYESRTFDKDDSPGEALASGEAGTFALIHYDIWHRSTPNVLGQHRYMLKFEFMRTAAPVAPTWDNRTPEWIAPASFSAPLVRHDAMWEDTWLWLQGKIGGTAGLASDSSERLAELEARLQDPFEPERLNAAYGLARNGRNGIERLLPALGHERAEVSRAAAYGLSAAGAEAVPGLIAALDSPSPHTVMHAVFALGELRELASAAVPAIIRLLDGSSEPVRRTAVEALGMIGEPAAQATEGLIRCLKDADVQVRFMAGLSLARLGSKAAAAVPHLVAALEDENRYVRGHAAEALRYIGTEEARDALIDFLFSSRWCPTTTPASTFYP
>NZ_CP013653.1|WP_062491015.1|1150917_1152831_+|HAMP-domain-containing-histidine-kinase
MKAVSGIAVLLLLGLLLPYSGLAKAESQNERSLRGFRYMWVYDVSGNAGTFPDSAAADWKNADAGRPMPFSKPAGASAAWIELDIGRNDCSGRTCGLYISRLYAQNVSVYVDGRMEYETRRNYRYDVNEMLLPLRLEGEGRLVYLRLETATGKLGIPDFPVVGDYQRMLVSYVKRDLFDIVLGGAYLFMGLAVFFVALFARRSRFASWMSLFVILISTGILILTCTPIMYAIWHDYGQWMVRMSNLALYMLLPAITIFVEGIFGKGTFRIVGKLRVFQIIFMAFCTAGLLLNELTSYRFSDYCFFLSDIMLGGLTIVQFAILAACSIARSRRGSRDSVILTAGLGILAVAVAIDLVRYAANFDDELYVWKIGTAGFAFSLIAILGRGIREDQIRLLRYSRELKVYFDQLQQSDKMEIISQLAASIAHEVRNPLQVTRGFLQLLSKKSEKEQDKSYLLLAMDELDRASKIITDYLTFAKPQLESVQTLRVSEEMAQIAGMLVPLANMRGGEITVDVPDHLYVKGNPSKFKQAFVNVLKNSIEAFDGQGEIRMWAYQDRQEVVIHIRDNGEGMDEEVVAKLGEPYFSNKAKGTGLGLLVTIRIVEAMKGKIEFRSRKGHGTEVIVRLPAEPPAAELAAP
>NZ_CP013653.1|WP_062491013.1|1150235_1150664_-|hypothetical-protein
MNTRIEHAETLGRYERASRKKSNRSFLVFLIAWLLLIGSGAYGALKYTEHLRAVTVAELERQTAAQITKMQDDYDARIRQLQAKVDDKLVQLEDKINALNELLTFTKDNATNKTDNSNKLYTEINEVKKQLNELQKNLEVLK
>NZ_CP013653.1|WP_062491011.1|1149162_1150239_-|phosphodiester-glycosidase-family-protein
MRLTVKSLNRFVLLACAPFIGAMLWIASADIRFALSADAYPAPPDLPPFMAAGQADRIASKLEQAYEIARQTAASMQKTVELYNKTNAEVRQVVRVSAGLAGKPAAIYDRRITRKLGTPVQTVQSDKITAQLFYLKTHHFQSYALKVKLKSPEAMTMVLGEDRFGGAETTLSAAQRYNAVAGVNAGGFADRKGVRYPLGTTIVDGEYANGFHPSEKDLFVVGMNEEMQLVGGKFFRKEQLDKLNLRFGASFVPMLMKNGSALAIPPKWQTSPKRAPRTVIANYKDGQLLFLVADGYSEDGRSGATLREMQILLKRFGAVDAYNLDGGGSSSLVFNGRVVNRPSDGQLRKLPTHFLFFA
>NZ_CP013653.1|WP_062491009.1|1147928_1148987_-|SIS-domain-containing-protein
MTETLGRLTYPEITGQPEALAAALQQCAVQSDWIDRYLASSDYDEIIFIGSGSSYYQSMTMAATARLWLNRPATALPSSEIYLFRRQNAVEGRRYLLVGVSRSGESTEVLLALESVKDLAGWTRCGITCHEDSSMARMVPCLVSPLGKERSTVMTKSFSSMTYMMQAAIAKAAALADMEQELAATAKASRDNVERADRFAQRLAGQGPFSRYLFLGMGAYYGLSQEAMLKVKEMAVVWSESFGTLEFRHGPKSVVEPGALICVLVSESARSYELKVAEEMKQYGATVVLLTAREGADTAFADAVFVTGCPDSTDEARAVLNLPPLQYLGYYTALSKGIDPDSPRNLTQVVKI
>NZ_CP013653.1|WP_062496539.1|1146902_1147883_-|ROK-family-protein
MSRYIGLDVGGTNIVGGLLNERCEPIRTTRCATEADRGPAHVLNRIETVINEMRAAAGSHRVEAVGIGIPGFVDPEAGLSVFAGNLGWHNVPLGAEMARRTGLPVFIDNDVRMYIYGEAMRGAGEGFGHVLGVTVGTGLAAAVVNEGRLYYGGAQMAGELGHIPLPGIDYACPCGLTGCAERIVSAIGIARQAADALQAGESSILSERFSPENGAKPTAADVAAAYDAGDALAIRIFERTGDYLGLALAYAVTLFSPDIVIVGGGVAQAGERLLAPARRRLQQSVYRGYWERLTIRTASLGEHAGLIGSALMASKQLMKSQQSGGM
>NZ_CP013653.1|WP_062491007.1|1146033_1146900_-|class-II-fructose-1,6-bisphosphate-aldolase
MPLVSSTAMLNEARRNGYAVVAFNVHTLEMLQAVAEAAEETESPLIIQTTVGTVKHLGPEYVAAAATVAADRSRVPIALHLDHCTDFSLIVRCIRAGYTSVMIDASMHPFEENVRQTAKVTEIAHAAGVNVEAELGKVGGVEDDIVVAEHEALLADPDECALFLERTGVDTLAPAIGTAHGIYKGEPRIDFERIAKIAERVPVPLVLHGGSGIPEEQVKRCVSLGMAKMNVATELRILFSDAIKRVFAEHPEENDPRKYMVPAKQALKQAAAAKMRLTGAAGRARDFR
>NZ_CP013653.1|WP_062491006.1|1145094_1146027_-|1-phosphofructokinase-family-hexose-kinase
MITTVTLNAAIDKTYALDALRTGRVQRVRRVTAVPGGKGINAARVICQLGGDVVAAGVVGGYNGQFIAASLTAQGIPHELMTIEGESRICLNVLDDDGRSTELLEPGPVFPMERFGELVSLIGRLAGRSRLVVFSGSLPAGLPADTYARLTEAARQAGAAVFLDASGAALAEGLRAKPDWIKPNAEEWEQLYGEGPLKDEEALIASLLRGAERFGVRIVVTLGADGALAAVCGELYRIRPPRIDAVNPVGSGDAFTAGLALASARGMRLVDGLRLATAAAAANALSPSAGHVRREDVERLLPRVSIERLA
>NZ_CP013653.1|WP_062491004.1|1143398_1145054_-|DUF4091-domain-containing-protein
MTIALETRVISSLEKVFPDEELAASPFRQASAFRNETFSFQVAYRSGLLLKRMKVEAAAALQAPISLRAVGLVPSEMPVYPDHDDNVVRTKPGLYPDPLLPPEPKEGWIAPPGQWRSVWVTVELDGRDGPGEYPIEIRFIAENGTTAAAETFTLDVLPAWLPEQRLLHTEWFHTDCIATYYGVDVFSERHWSLIESFMKTAAGHGINTIYTPLFTPPLDTDVGGERPTVQLVDVWRENGRYRFGFDKLNRWLDLAERIDFKVIEFSHLYTQWGARHAPKIIAVENGVEKRIFGWETDAAGPEYRAFLEAFLSELLPLVRERGLQERCLFHLSDEPSGVHLEMYRSVSEWTKERLGGLPTMDALSDRSFYDNGLVQHPVPANNHIEPFLEAGVPDLWTYYCCSQYKDVSNRFFSMPSARNRILGFQLYKFRIAGFLHWGYNFYYSQYSRFPIDPFRVTDAYYAFPSGDAFLVYPGPDGPIESIRLEVLYEALQDLRALEALEAAVGRGETLRLLEEGLDEPITFSRYPRDAAWLLAKREQINRAAAEAAQRA
>NZ_CP013653.1|WP_062491003.1|1142101_1142848_-|hypothetical-protein
MNRKKMIMYVLLSMLALSMGGLSASAAATAGKTAAVDKAIESIMKTKFVPVYYERKTIGKMKSVSQEKADPQKKTDPQTEETVVKTWDNTAKGQYREEAKSAGKTYYVVSDGKKTIHYTAGEKQAIAYPSPVNSSPIDAKHVIRDMQVTTDLTLVGEENMLSRTVYHFKGEGKTVKKKLAGGGTRTVTYPDMEIWVDKKTGLLLKQKRQDQYYDWETTVTKIDFPSKFPTNTFKLSLPKGVKVVDAED
>NZ_CP013653.1|WP_160327762.1|1155272_1155620_-|hypothetical-protein
MAYLDCMVCEGDIREVSRLKFVLGEGGMAWHFSFISNQPILQKCSFFPLLTARTLKLLRLCRIFDLQMVYKTEMTNKSCIFAGIWAKGIRQGKKSCTFAVFTTFSCYQPPLGPLK
>NZ_CP013653.1|WP_062491020.1|1156057_1157041_+|peptide-methionine-(S)-S-oxide-reductase-MsrA
MSDNERNTELDAGLELATFAGGCFWCMVSPFEEMPGIKKVVSGYTGGHKPNPTYEEVCSGTTGHAEAVQITFDPNVFPYTKLLDIFWQQIDPTDAGGQFHDRGDSYRTAIFYHNEEQRLAAEASKRELEASGRFDRPIVTEIVPAGPFYPAEEYHQDYHKKQPLRYKMYRKGSGRDAFIAKHWSLPKDEAELKRRLTPLQYEVTQRGATEPPFHNEFWDHKEEGLYVDIVSGEPLFTSRDKYDSGCGWPSFTKPVDPSNVTEHIDLSHGMIRTEVRSRKGNSHLGHVFDDGPKPGGLRYCINSAALRFIPKEDLEKEGYGEYRHLFD
>NZ_CP013653.1|WP_082655072.1|1157189_1165505_+|glycosyl-transferase-family-36
MILNAEQLEQQARELALTHNPDGARRQGKALWKSFHRDMESLRKYAALLKQEGAVCSQPAEEWLLDHADFMEEQALSVRRGLGGIASGRLPMLRGSDEWRATAICREYLSLVDGAYDEDTFAAFVNAYQEAAVLTIAECWSFPVLLRVALIRRYAAVMRSVRERRKMCEQADAILEPLFREREKPDGSAVRDALEKAGIPMPLSGGLIVYLASRLNEWTDDAAAVRDWLVCSLDNGAESLNRLITYEHRLQASYEVAAGNIIRSLRSLARGEWESVFEQICVAERALREERAGTYALMTAESRHTLRTRVERLAQRMRVPENLIAERAVMLAGRHADDTEAGASESVDGKPGPNAPLPPRSAYVAYYLLDPAGMAELQRSLRECADPRRMPETFVLRRGSAAYFTLLAGLFAAALTLFAIWSDRGAALGPGLQALLLLALIMPAGEWAVTIAHGLIRRTFRSRPLLRYDYASGVAPDAATIVVVPVIWSRPEEADELADRLELHYLANRDPNIYFALLGDFADADEERKETDEAVLARARERIEALNRTYSDGEGGRQPFLLLQRHRKWNPSENVWMGWERKRGKLVEFVELLRGGKETSFGVIVGNRDILSRIRYVITLDADTQLPIGSAQRMIGTIHLPYNRPRLNAAGTRVAEGYGVLQPRIGVSYASVQESRLTRLWAGEPGIDPYAFAVSDPYQDALGQGIFTGKGIFDAEVFARVLSDRIPDNRVLSHDLLEGGFLRGGLLADIELIDGHPASFRAHQRRLHRWVRGDWQLLCWLMPRVCDRHGRLRPVDLPALTRWQMIDNLRRSLLQPALYALLLLGMLLPPPAGGSAVAIALATIAMPVVRAIVAPARLVRRPGLLLPAAGQAAVTLAALPHQSALLLDAIGRTLFRLFVSKRRLLEWTSSAETERRSRKEKLQLSGYRAGVALTLLFAAAAAFAPVPWLRWTGLAIAVIWLAAPLVAGWLSRSPASAPEALKDSDKDELRAVAEEIWKYYEEYAGERDHWLPPDNVQIDPPTGAAHRTSPTNIGLMLASTLAARDFGFIGTPELIERVERTVGTIERMDKWCGHLYNWYDTTTLRPLPPVYVSTVDSGNFVAYLIVVKEGVTEWAARDSEGEWRERAERLAARIERLISDTDFRPLYDERTQLFALGYHAGLKQRETILYDLLASEARQASFLAIATGQVPPSHWFKLGRAMTRSGKHPTLMSWSGTMFEYLMPALVMRTYRNTIWDATYRGVVRRQIDYARQRGVPFGISESGYYAFDYRMNYQYRAFGVPGLGFQRGLDEELVVAPYATIMALPYAPREALADLRRMAAAGARGKYGYYEAIDYTEKRMPDQRDRMVVRSFMAHHLGMSMLTLGNLLLPYKMYDRFHRDKRVQAAELLLQERVPEKPAIVSDASARFKTRQPANREEAVMPLREFDTPHTPVPEVCVLSNGSYTTVVTNRGGGFSRYDGIAVSRWREDPAADPPGQCMYIRDVESGDVWSPAYGPCMTPSSDQRAQFSLEQARFLRRDGEIATELDICVSPESDAELRRLTLTNEGDRTRILEVTTYVELALAPPAADDAHMAFSKLFVQTEYDEAAGCLLAVRRPRTEDEQPRWAAHTLTAGCEPLGPVEYETDRSSFIGRGHTLARPQGLASRLTETVGAVLDPVFVMRRRVSVGPGERVSLFAATGVAGERGEAVEIVRALCGAQQAERTFQLAWTRSRIDLRHQRLTAAEATQFQTLAGRLLYPAPLRKDRAKAIAANVKSQSGLWPLGISGDLPIALVRIRDSAHLSFAAKMIAGHGYLRRLGLPFDLVLLNESDDGYQQDMQEALRRAIEQSADYPHPQPGGVYLVAASQIADAEKTLLLAVARVTLRADGPSLGAQLRVKAAGNRPAEQRPVMTAAGSAPPREAPDAAEDPEDWELFNGWGGFSPDGKEYRIALRGGKYLPAPWSNVLANRSFGCLVTELGTGYTWWRNSREFKLTPWSNDPVLDPPGEACYIKDEETGDIWSPAPSPTLEPANCTVAHGRGYTRFRRLCRGLRQQMTVFVPREDAVKIVELQLENVADSPRTLSVVYRCDWVLGVRRPDSAPHIVSEWDSTAECLLARNTYQDTFRDAVAFLHVHDKDGAAAADEPDEAGMRAQADDRLSYTADRAELYGPGGSPERPAGLAGDRLSNATGPHADSCGAIRLRLELAPRSVRKVYVLLGAAPSREEAVRLVREYGSAEACETAFADMRDYWDGILDQIVVKTPDKEMDLLLGGWLLYQTLSCRMWARTGFYQAGGAYGFRDQLQDSLALLHTRPDLTRAQILLHAAHQYEEGDVQHWWHDETGRGIRTRYSDDLLWLPYAVSRYIAHTGDESVLDEIVPYLHSPPLEEHEHERYEETVRSPQSGTVYEHCWRAIERAYRLGENGMPLMGIGDWNDGMNSIGDLGRGESVWLGWFLCDVLERFAAICELRGEAARALTCRNRRQAIADALNERAWDGEWYRRARADEGHWIGSNRNEEARIDAIAQSWSVISGAAPRDRALKAMRSFDRELVDRGLAVARLLTPPFDRTDPNPGYIQGYPPGIRENGAQYTHGVIWSVVAWCMLGDGNKAAELFHMLNPLAHARSPGDVRTYAGEPYVMAADVYTSAPHEGRAGWTWYTGSSGWMYQAGIEWILGLRREGGKLIVRPCIPDDWPGYTAIYRFGTTNYRIVVRNLAGGALPPDPDGRDDAAEMPETPESDAHIRLEGDPDTGVSFELSDDGRQHVVTVMLRPRTAQPDAGQPSAAAGKALPHT
>NZ_CP013653.1|WP_145977322.1|1165683_1166658_+|ABC-transporter-permease-subunit
MNTIRPDRPLPPPIQPASRGLRARRLLRRLAAQRYLQAMALLGVAWMVVFNYIPMYGIVIAFKDFSIIRSVAEAPWVGLEHFKAFLEDEELPNVIRNTLGISVIKLVIGFPLPILFALFLNELRSLRFKKSVQTISYLPHFLSWVILGGILATWLADVGIVNKLLLSLGLISEPVSYLAEPSYFWTIVIASDIWKELGWSAIIYLAAIAGVSPELYEAATIDGAGRFQKMWYVTLPGIKGTVTILFILAVSGVLNSNFDQILVLRNPLNESASNVIDIYVYQTGLLNARYSYATAVGLIKSVIALMLLLAANTVTKKLNQSSLF
>NZ_CP013653.1|WP_062491023.1|1166679_1167567_+|carbohydrate-ABC-transporter-permease
MLMLKRKTAGESVFDAVNILGMLLICFLTIYPIWYVLVNSFNDGQDAMRGGIYWWPRVFSFDSYQAVFASPGIMTAMGVTVAKTVVGTAAHVFFTAMVAYAVSRKELIGRNLYMTVGTITLFFGGGLIPYYLLIRDLHLLDSFLVYIIPAMFSFFHLIIFLSFFRDIPEGLEEAARIDGANDLSIFCRIIIPVSMPVVATIALFHGVYQWNDYFTGMIYINNQDLQPIQTFLYRVVAQSSSNQMVAAMPGGISKSVTSQSVKLATMVVTTAPIVFVYPFLQKYFVRGLMIGSIKG
>NZ_CP013653.1|WP_062491025.1|1167616_1169305_+|extracellular-solute-binding-protein
MANDRAKKLLALALIFGLVFALAACSGGGSTAGEDQGAAKKEPAGETPKEESQPANPDEPGWKADTSPITFDWYLNFSWFPNKWGVDPTSQYVTKKTGVDINFIVPAGNENEKLNTMIASGKLPDFITLGWYEDGVQAMIDGGLVLPLNELAEQYDPYFFKVADPAKLSWYTKDDGNVYAYPNASSSPKDFEKYSREYTSNQTFVVRKDMYEALGKPDMRTPEGFLNALKAAKEKFPDVNGQPLIPIGLHEFSETGNYSLEGYLQNFLAIPMEKDGKLYDRVTDPEYIRWLKTFRKAEEEGLLAKDIFIDKRPQMEEKIAQGRYFAMLYQRSDFAAQQNVLYANDPNSVYIAVDGPANSNMDPPTLAGPGISGWTVTLISKDVKDKERAIRFLTYLISEEGNKDLYLGEKGVTYDTIDGKDQFKPEALELLNKDRSAFDKQYGASYTFWMLMDTNMNLQWAPPSVEPAKQLEDWTKGKTKSFSQFDQINPTGNSEEGIANTKIAQLWGKTLPKLLLAKTDEEFDKLFDEFLKKREEAGYEKVRAYQQQKYEENVKRLEEFLK
>NZ_CP013653.1|WP_082655519.1|1169403_1171284_+|sensor-histidine-kinase
MFRRPGSALERWLVRIGQLSLQKRLFIIYILIILLPGVLISVPVFNQLSHKYLEDVRKTNITALEFETVNIARSIETMERAAQLAVSDKDILYYLEQTSEPNTSELIDFNRNAVANLLRLQYNNPNVEHIRLYAESPFVIEIWPVFIQASRIRGEPWYEKVREQNGKELWTFDRQDRDPILRNVDAEKVNRPKISLLREIEYPIGRDVGIMQIDMLLANFFPNTFRDAHDGQSQMFVVDGDGRFYYDTSSPFLNRTGLSTQQLASRLESREPGVHSVTFTAGNRPFLCAYVYNERIGAYLMRVASLENALAAVNQTRNGMLAVILGLFAVLSAATYFLLSYILKKLRVLTESMKKVRQGDFNFDLSIKGGGEVGELAHHFRKMLKKINELIAEAVTKNAATKEAELKSLKNQIDSHFLYNTLENIKMLAEIENQPAISDALTSLGGMMRYNLQWTSEYVPLRDELNHIANYVAIMNIRFAEKIVIVNEIPDMYLDRQLLKMSLQPIIENAVQHGAAPSRKRDLTVTLRARTEGDAMIIELTDDGAGMPEQKVEALNRMFAEDDPERSAYCGQRADRPARGGIGLRNVNQRMKLFYGKAYGLRAESKEGEYTRICMSVPYIDSGGEL
>NZ_CP013653.1|WP_062491031.1|1171286_1172894_+|response-regulator
MRTLLIVDDEPNIRFGLKAMIEREQPGRYDFCFASDGEEALVHMRSRTIDLVITDIRMPGMDGLALIREIRSCSSAPEVLILSGYDDFQYAKEAIRYGVKEYLLKPIVREELFKALERAGNELDRQREVAGRLNALDRARDELLAAQLNYIWLHPDIGEEEVERRCADIGLSAFEPLYYVGILRCPAGERCLAAARRCLAAAVKESGDGAAASARTRAVAAEDKDGQLVFVTNDAALPDVLMAHLAAERHDRSCIGFSAGLRRIGELKRGFQQASRALKYRLLLSGAAGRVIRYDSVKEQGRDYIVPVEAIRKLANMLGTDRDSEMKALLAELLDANRLARYDIALTERISAALNEHVFDQAFNRYGEESVEIIRMYKQAGDLCRFETIRDYHRCVEDLLLRLNDYIRGLRSVFGEHQELRRAVEYIHDHYDRDLNMATVSNHVSLSYTYFSQAFKEYTGESFVVYLKKVRIGKAKELLVRTDDKIYEIAAKVGFDSVKQFNRVFRELEGVSAQEYRTVRRELRESRQHSPFPRV
>NZ_CP013653.1|WP_082655073.1|1172787_1173765_-|alpha/beta-hydrolase
MRRDIRLWTWRGEPFEYSVVGEGKPVLMMHGGHSNCREEFGYRELTAAGYRLITPSRPGYGGSSKAIGRTLDEACEAYAGLLDHLGADAAHVIAFSAGGPSGIRFAGLYPERVRSLVLLSAVTGQWLTPDHREYKMARILFGPWLERYTWLALRLASNIWPRFGFRLIARNISLLPPKEIERRMGPLDIEAVRRMNNRQRSGSGFALDLKQAGQLRKADLEAVRAPALIVHSPWDMSVGIRNARYACEHIPHAEFAEADAWGHLIWLGRGGGAVDRACVDFLRRHDGTAPFRPAETGNAGGFPEAPAGRSGTPAPKRPPVPETRG
>NZ_CP013653.1|WP_062496541.1|1173811_1174702_-|AraC-family-transcriptional-regulator
MDSLRKPDGFEFQRLFVQPDYMAKELSESELTRDLFVSDIGCFPRALHHYRERSEGCDSHIFIYCAEGEGWVELNGAKAKTVAAQQLAVIPAGLPHRYGASAADPWTIYWFHVKGAHAAKLIALYGLDAGPFRLSMRSHAQWLDEFEHIYRLLDDKPYSLPAQVHAAETARRLISGIGLNAGKTAQDKKRESYLEQAIRYMTDHLADSFRLSDLARHTGLSKQHLIYLFNRETGCPPVEYFLRMKMQRAGQLLDLTDWSVKEIAGAVGLSDPYYFSRLFKKMMGCSPTAYRGIPKG

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Crispr_ID: NZ_CP013653_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013653_1

1152818-1153079

Orphan

Consensus_repeat	Method
TTGCCGCTTCATAGCTGCG	CRT

6 spacers

The CRISPR arrays of NZ_CP013653_1

>merge|NZ_CP013653|1|1152818-1153079|CRT
TTGCCGCTCCATAGCTGCGCTTGTCGGTGGGTCCGCGAGATTTGCGCTTCATAGCTGCGTTTGTCAGTGGGTCCGTCATACTTGCCGGTTCATAGCTGCGTTTGTCAGTGGGTCCGCGAGATTTGCGCTTCATAGCTGCGTCTGTCGGTGGAGCTACCAGACTTGCCGCTCCATAGCTGCGCTTGTTGTGGGCCCGCGAGATTTGCCGCTTCTTAGCTGCGTCTGTCGGTGGACCCGACAAACTTGCCGCTTTATAGCCGCG

>NZ_CP013653|1|1|1152818-1153079|CRT
TTGCCGCTCCATAGCTGCG	CTTGTCGGTGGGTCCGCGAGA
TTTGCGCTTCATAGCTGCG	TTTGTCAGTGGGTCCGTCATAC
TTGCCGGTTCATAGCTGCG	TTTGTCAGTGGGTCCGCGAGA
TTTGCGCTTCATAGCTGCG	TCTGTCGGTGGAGCTACCAGAC
TTGCCGCTCCATAGCTGCG	CTTGTTGTGGGCCCGCGAGAT
TTGCCGCTTCTTAGCTGCG	TCTGTCGGTGGACCCGACAAAC
TTGCCGCTTTATAGCCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013653.1\|WP_082655072.1\|1157189_1165505_+\|glycosyl-transferase-family-36	unknown	unknown	gnl\|CDD\|225990
NZ_CP013653.1\|WP_062496537.1\|1141494_1142004_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|213752
NZ_CP013653.1\|WP_062491003.1\|1142101_1142848_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371444
NZ_CP013653.1\|WP_082655073.1\|1172787_1173765_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP013653.1\|WP_062491004.1\|1143398_1145054_-\|DUF4091-domain-containing-protein	unknown	unknown	gnl\|CDD\|379121
NZ_CP013653.1\|WP_062491009.1\|1147928_1148987_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225132
NZ_CP013653.1\|WP_082655519.1\|1169403_1171284_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NZ_CP013653.1\|WP_062491017.1\|1153244_1154657_+\|phytanoyl-CoA-dioxygenase	unknown	unknown	gnl\|CDD\|224331
NZ_CP013653.1\|WP_160327762.1\|1155272_1155620_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062491013.1\|1150235_1150664_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293766
NZ_CP013653.1\|WP_062491011.1\|1149162_1150239_-\|phosphodiester-glycosidase-family-protein	unknown	unknown	gnl\|CDD\|378342
NZ_CP013653.1\|WP_062496539.1\|1146902_1147883_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP013653.1\|WP_062491023.1\|1166679_1167567_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP013653.1\|WP_062491025.1\|1167616_1169305_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270300
NZ_CP013653.1\|WP_062491006.1\|1145094_1146027_-\|1-phosphofructokinase-family-hexose-kinase	unknown	unknown	gnl\|CDD\|224030
NZ_CP013653.1\|WP_062491001.1\|1140035_1141493_-\|DUF4179-domain-containing-protein	unknown	unknown	gnl\|CDD\|379369
NZ_CP013653.1\|WP_062491007.1\|1146033_1146900_-\|class-II-fructose-1,6-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|376459
NZ_CP013653.1\|WP_062491031.1\|1171286_1172894_+\|response-regulator	unknown	unknown	gnl\|CDD\|381091
NZ_CP013653.1\|WP_145977322.1\|1165683_1166658_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226666
NZ_CP013653.1\|WP_062491020.1\|1156057_1157041_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|184456

Protein	Function_ID	Function_description	E-value
NZ_CP013653.1\|WP_082655072.1\|1157189_1165505_+\|glycosyl-transferase-family-36	gnl\|CDD\|225990	COG3459, COG3459, Cellobiose phosphorylase [Carbohydrate transport and metabolism].	0
NZ_CP013653.1\|WP_062496537.1\|1141494_1142004_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|213752	TIGR02954, RNA_polymerase_ECF-type_sigma_factor, RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.	2.02779e-31
NZ_CP013653.1\|WP_062491003.1\|1142101_1142848_-\|hypothetical-protein	gnl\|CDD\|371444	pfam11271, DUF3068, Protein of unknown function (DUF3068). Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.	0.000750969
NZ_CP013653.1\|WP_082655073.1\|1172787_1173765_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.31028e-20
NZ_CP013653.1\|WP_062491004.1\|1143398_1145054_-\|DUF4091-domain-containing-protein	gnl\|CDD\|379121	pfam13320, DUF4091, Domain of unknown function (DUF4091). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 70 amino acids in length. There is a single completely conserved residue G that may be functionally important.	9.45637e-25
NZ_CP013653.1\|WP_062491009.1\|1147928_1148987_-\|SIS-domain-containing-protein	gnl\|CDD\|225132	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane].	9.12463e-60
NZ_CP013653.1\|WP_082655519.1\|1169403_1171284_+\|sensor-histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	2.30085e-48
NZ_CP013653.1\|WP_062491017.1\|1153244_1154657_+\|phytanoyl-CoA-dioxygenase	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	1.10468e-20
NZ_CP013653.1\|WP_062491013.1\|1150235_1150664_-\|hypothetical-protein	gnl\|CDD\|293766	cd16147, G6S, glucosamine (N-acetyl)-6-sulfatase(G6S, GNS) AND sulfatase 1(SULF1). N-acetylglucosamine-6-sulfatase also known as glucosamine (N-acetyl)-6-sulfatase hydrolyzes of the 6-sulfate groups of the N-acetyl-D-glucosamine 6-sulfate units of heparan sulfate and keratan sulfate. Deficient of N-acetylglucosamine-6-sulfatase results in disease of Sanfilippo Syndrome type IIId or Mucopolysaccharidosis III (MPS-III), a rare autosomal recessive lysosomal storage disease. SULF1 encodes an extracellular heparan sulfate endosulfatase, that removes 6-O-sulfate groups from heparan sulfate chains of heparan sulfate proteoglycans (HSPGs).	0.0013067
NZ_CP013653.1\|WP_062491011.1\|1149162_1150239_-\|phosphodiester-glycosidase-family-protein	gnl\|CDD\|378342	pfam09992, NAGPA, Phosphodiester glycosidase. This is a family conserved from bacteria to humans. The structure of a member from Bacteroides has been crystallized and modelled onto the luminal region of the human member of the family, the transmembrane glycoprotein N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. There is some conservation of potentially functional residues, implying that in the bacterial members this family acts in some way as a phosphodiester glycosidase. The human protein is also present, so the eukaryotic members are likely to be catalyzing the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides.	6.0804e-41
NZ_CP013653.1\|WP_062496539.1\|1146902_1147883_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.5814e-65
NZ_CP013653.1\|WP_062491023.1\|1166679_1167567_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	8.04379e-57
NZ_CP013653.1\|WP_062491025.1\|1167616_1169305_+\|extracellular-solute-binding-protein	gnl\|CDD\|270300	cd13582, PBP2_AlgQ_like_3, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold. This subgroup includes uncharacterized periplasmic-binding proteins that are closely related to high molecular weight (HMW) alginate bining proteins (AlgQ1 and AlgQ2) found in gram-negative soil bacteria. The HMW alginate uptake system is composed of a novel pit formed on the cell surface and a pit-dependent ATP-binding cassette (ABC) transporter in the inner membrane. The transportation of HMW alginate from the pit to the ABC transporter is mediated by periplasmic HMW alginate-binding proteins (AlgQ1 and AlgQ2). Alginate is an anionic polysaccharide that is made up of alpha-L-mannuronate and its 5'-epimer, alpha-L-guluronate. Alginate is present in the cell walls of brown seaweeds, where it forms a viscous gum by binding water. Alginate is also produced by two bacteria genera Pseudomonas and Azotobacter. AlgQ1 and AlgQ2 belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. However, unlike other bacterial periplasmic-binding proteins that deliver small solutes to ABC transporters, AlgQ1/2 can bind a macromolecule and may have specificity for either sugar or a certain type of polysaccharide.	2.19466e-70
NZ_CP013653.1\|WP_062491006.1\|1145094_1146027_-\|1-phosphofructokinase-family-hexose-kinase	gnl\|CDD\|224030	COG1105, FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism].	7.39077e-99
NZ_CP013653.1\|WP_062491001.1\|1140035_1141493_-\|DUF4179-domain-containing-protein	gnl\|CDD\|379369	pfam13786, DUF4179, Domain of unknown function (DUF4179).	7.60825e-06
NZ_CP013653.1\|WP_062491007.1\|1146033_1146900_-\|class-II-fructose-1,6-bisphosphate-aldolase	gnl\|CDD\|376459	pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II.	6.78987e-142
NZ_CP013653.1\|WP_062491031.1\|1171286_1172894_+\|response-regulator	gnl\|CDD\|381091	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators. This family is composed of uncharacterized response regulators that contain a REC domain and a AraC family helix-turn-helix (HTH) DNA-binding output domain, including Bacillus subtilis uncharacterized transcriptional regulatory protein YesN and Staphylococcus aureus uncharacterized response regulatory protein SAR0214. YesN is a member of the two-component regulatory system YesM/YesN and SAR0214 is a member of the probable two-component regulatory system SAR0215/SAR0214. Also included in this family is the AlgR-like group of LytTR/AlgR family response, which includes Pseudomonas aeruginosa positive alginate biosynthesis regulatory protein AlgR and Bacillus subtilis sensory transduction protein LytT, among others. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.68885e-51
NZ_CP013653.1\|WP_145977322.1\|1165683_1166658_+\|ABC-transporter-permease-subunit	gnl\|CDD\|226666	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].	8.84456e-121
NZ_CP013653.1\|WP_062491020.1\|1156057_1157041_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|184456	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB.	9.21831e-114

>NZ_CP013653.1|WP_062491013.1|1150235_1150664_-|hypothetical-protein
MNTRIEHAETLGRYERASRKKSNRSFLVFLIAWLLLIGSGAYGALKYTEHLRAVTVAELERQTAAQITKMQDDYDARIRQLQAKVDDKLVQLEDKINALNELLTFTKDNATNKTDNSNKLYTEINEVKKQLNELQKNLEVLK
>NZ_CP013653.1|WP_062491011.1|1149162_1150239_-|phosphodiester-glycosidase-family-protein
MRLTVKSLNRFVLLACAPFIGAMLWIASADIRFALSADAYPAPPDLPPFMAAGQADRIASKLEQAYEIARQTAASMQKTVELYNKTNAEVRQVVRVSAGLAGKPAAIYDRRITRKLGTPVQTVQSDKITAQLFYLKTHHFQSYALKVKLKSPEAMTMVLGEDRFGGAETTLSAAQRYNAVAGVNAGGFADRKGVRYPLGTTIVDGEYANGFHPSEKDLFVVGMNEEMQLVGGKFFRKEQLDKLNLRFGASFVPMLMKNGSALAIPPKWQTSPKRAPRTVIANYKDGQLLFLVADGYSEDGRSGATLREMQILLKRFGAVDAYNLDGGGSSSLVFNGRVVNRPSDGQLRKLPTHFLFFA
>NZ_CP013653.1|WP_062491009.1|1147928_1148987_-|SIS-domain-containing-protein
MTETLGRLTYPEITGQPEALAAALQQCAVQSDWIDRYLASSDYDEIIFIGSGSSYYQSMTMAATARLWLNRPATALPSSEIYLFRRQNAVEGRRYLLVGVSRSGESTEVLLALESVKDLAGWTRCGITCHEDSSMARMVPCLVSPLGKERSTVMTKSFSSMTYMMQAAIAKAAALADMEQELAATAKASRDNVERADRFAQRLAGQGPFSRYLFLGMGAYYGLSQEAMLKVKEMAVVWSESFGTLEFRHGPKSVVEPGALICVLVSESARSYELKVAEEMKQYGATVVLLTAREGADTAFADAVFVTGCPDSTDEARAVLNLPPLQYLGYYTALSKGIDPDSPRNLTQVVKI
>NZ_CP013653.1|WP_062496539.1|1146902_1147883_-|ROK-family-protein
MSRYIGLDVGGTNIVGGLLNERCEPIRTTRCATEADRGPAHVLNRIETVINEMRAAAGSHRVEAVGIGIPGFVDPEAGLSVFAGNLGWHNVPLGAEMARRTGLPVFIDNDVRMYIYGEAMRGAGEGFGHVLGVTVGTGLAAAVVNEGRLYYGGAQMAGELGHIPLPGIDYACPCGLTGCAERIVSAIGIARQAADALQAGESSILSERFSPENGAKPTAADVAAAYDAGDALAIRIFERTGDYLGLALAYAVTLFSPDIVIVGGGVAQAGERLLAPARRRLQQSVYRGYWERLTIRTASLGEHAGLIGSALMASKQLMKSQQSGGM
>NZ_CP013653.1|WP_062491007.1|1146033_1146900_-|class-II-fructose-1,6-bisphosphate-aldolase
MPLVSSTAMLNEARRNGYAVVAFNVHTLEMLQAVAEAAEETESPLIIQTTVGTVKHLGPEYVAAAATVAADRSRVPIALHLDHCTDFSLIVRCIRAGYTSVMIDASMHPFEENVRQTAKVTEIAHAAGVNVEAELGKVGGVEDDIVVAEHEALLADPDECALFLERTGVDTLAPAIGTAHGIYKGEPRIDFERIAKIAERVPVPLVLHGGSGIPEEQVKRCVSLGMAKMNVATELRILFSDAIKRVFAEHPEENDPRKYMVPAKQALKQAAAAKMRLTGAAGRARDFR
>NZ_CP013653.1|WP_062491006.1|1145094_1146027_-|1-phosphofructokinase-family-hexose-kinase
MITTVTLNAAIDKTYALDALRTGRVQRVRRVTAVPGGKGINAARVICQLGGDVVAAGVVGGYNGQFIAASLTAQGIPHELMTIEGESRICLNVLDDDGRSTELLEPGPVFPMERFGELVSLIGRLAGRSRLVVFSGSLPAGLPADTYARLTEAARQAGAAVFLDASGAALAEGLRAKPDWIKPNAEEWEQLYGEGPLKDEEALIASLLRGAERFGVRIVVTLGADGALAAVCGELYRIRPPRIDAVNPVGSGDAFTAGLALASARGMRLVDGLRLATAAAAANALSPSAGHVRREDVERLLPRVSIERLA
>NZ_CP013653.1|WP_062491004.1|1143398_1145054_-|DUF4091-domain-containing-protein
MTIALETRVISSLEKVFPDEELAASPFRQASAFRNETFSFQVAYRSGLLLKRMKVEAAAALQAPISLRAVGLVPSEMPVYPDHDDNVVRTKPGLYPDPLLPPEPKEGWIAPPGQWRSVWVTVELDGRDGPGEYPIEIRFIAENGTTAAAETFTLDVLPAWLPEQRLLHTEWFHTDCIATYYGVDVFSERHWSLIESFMKTAAGHGINTIYTPLFTPPLDTDVGGERPTVQLVDVWRENGRYRFGFDKLNRWLDLAERIDFKVIEFSHLYTQWGARHAPKIIAVENGVEKRIFGWETDAAGPEYRAFLEAFLSELLPLVRERGLQERCLFHLSDEPSGVHLEMYRSVSEWTKERLGGLPTMDALSDRSFYDNGLVQHPVPANNHIEPFLEAGVPDLWTYYCCSQYKDVSNRFFSMPSARNRILGFQLYKFRIAGFLHWGYNFYYSQYSRFPIDPFRVTDAYYAFPSGDAFLVYPGPDGPIESIRLEVLYEALQDLRALEALEAAVGRGETLRLLEEGLDEPITFSRYPRDAAWLLAKREQINRAAAEAAQRA
>NZ_CP013653.1|WP_062491003.1|1142101_1142848_-|hypothetical-protein
MNRKKMIMYVLLSMLALSMGGLSASAAATAGKTAAVDKAIESIMKTKFVPVYYERKTIGKMKSVSQEKADPQKKTDPQTEETVVKTWDNTAKGQYREEAKSAGKTYYVVSDGKKTIHYTAGEKQAIAYPSPVNSSPIDAKHVIRDMQVTTDLTLVGEENMLSRTVYHFKGEGKTVKKKLAGGGTRTVTYPDMEIWVDKKTGLLLKQKRQDQYYDWETTVTKIDFPSKFPTNTFKLSLPKGVKVVDAED
>NZ_CP013653.1|WP_062496537.1|1141494_1142004_-|sigma-70-family-RNA-polymerase-sigma-factor
MSDEELIRRAQKGDYESYQAVVLKLKDKAYHIAFSYLQNESNSMDAVSDAVVKAMLHLKKLKEPKFFSTWFIRIVINECKIQLRKQKNAIKNANSLYHTALPVSFHDEVMDLEHTLARLPAMERLLVKMRYYLGYSFEEIAEATELPLGTVKSKVYATLRHLRVKLEVK
>NZ_CP013653.1|WP_062491001.1|1140035_1141493_-|DUF4179-domain-containing-protein
MTDQNNRMENEELDSYFQKMISGGDTQLTGAPPELEARIRSAILAAANRQRKKRIWLIRAAVSAASVIIILSVFLLSPTLSSYARQWLSAKVPEEWKRLFVEHRGIEGATSHDYRPIPSVTVEKDGISITLENIYLEEEKLQFYASVSGAEEQKKAFLIVSGNFKKAGMQQSITTIKDEQGNPLQVMQVVQRLNAKEVRDFLRTNPDTLTFEVFQSPSSVNERQQHFTDIVVPFHASSFLESKRIRLDKEVAMEKAKIRLEQLTVSPTEMKLEFQELVPEGFEVDIQHPGSEDKPYILGSDGEIYSSNDLSLKNDLTFHPSAFFKHGEEITLHLEKVWITDVNDSLEFDISLNDPESFPVTLQFRDRTISVIGARYESGHLYLDVEIAGSAEEPPPWKMEYERYQEKVNRDPELLQLYQKKYKVYSGQAYGRALPKINAEGGQVPGVHQVMMMAPEQEKYTLRVYRFEDPVAINQNIVIKVPEEP
>NZ_CP013653.1|WP_062491017.1|1153244_1154657_+|phytanoyl-CoA-dioxygenase
MNGQTPVLLTDDQMRQFITEGFLILKTDFSKQFHQELLQELNEVYEKEGNPGNNLLPRIRGLRKVFDHPVIRGGLTSVLGPDYMLHTHRHGHYNSSPQAGGWHKDSYWGYSRVRNHHPWWAMIMYFPQDTPPELGPTGIMPGTQNYESRTFDKDDSPGEALASGEAGTFALIHYDIWHRSTPNVLGQHRYMLKFEFMRTAAPVAPTWDNRTPEWIAPASFSAPLVRHDAMWEDTWLWLQGKIGGTAGLASDSSERLAELEARLQDPFEPERLNAAYGLARNGRNGIERLLPALGHERAEVSRAAAYGLSAAGAEAVPGLIAALDSPSPHTVMHAVFALGELRELASAAVPAIIRLLDGSSEPVRRTAVEALGMIGEPAAQATEGLIRCLKDADVQVRFMAGLSLARLGSKAAAAVPHLVAALEDENRYVRGHAAEALRYIGTEEARDALIDFLFSSRWCPTTTPASTFYP
>NZ_CP013653.1|WP_160327762.1|1155272_1155620_-|hypothetical-protein
MAYLDCMVCEGDIREVSRLKFVLGEGGMAWHFSFISNQPILQKCSFFPLLTARTLKLLRLCRIFDLQMVYKTEMTNKSCIFAGIWAKGIRQGKKSCTFAVFTTFSCYQPPLGPLK
>NZ_CP013653.1|WP_062491020.1|1156057_1157041_+|peptide-methionine-(S)-S-oxide-reductase-MsrA
MSDNERNTELDAGLELATFAGGCFWCMVSPFEEMPGIKKVVSGYTGGHKPNPTYEEVCSGTTGHAEAVQITFDPNVFPYTKLLDIFWQQIDPTDAGGQFHDRGDSYRTAIFYHNEEQRLAAEASKRELEASGRFDRPIVTEIVPAGPFYPAEEYHQDYHKKQPLRYKMYRKGSGRDAFIAKHWSLPKDEAELKRRLTPLQYEVTQRGATEPPFHNEFWDHKEEGLYVDIVSGEPLFTSRDKYDSGCGWPSFTKPVDPSNVTEHIDLSHGMIRTEVRSRKGNSHLGHVFDDGPKPGGLRYCINSAALRFIPKEDLEKEGYGEYRHLFD
>NZ_CP013653.1|WP_082655072.1|1157189_1165505_+|glycosyl-transferase-family-36
MILNAEQLEQQARELALTHNPDGARRQGKALWKSFHRDMESLRKYAALLKQEGAVCSQPAEEWLLDHADFMEEQALSVRRGLGGIASGRLPMLRGSDEWRATAICREYLSLVDGAYDEDTFAAFVNAYQEAAVLTIAECWSFPVLLRVALIRRYAAVMRSVRERRKMCEQADAILEPLFREREKPDGSAVRDALEKAGIPMPLSGGLIVYLASRLNEWTDDAAAVRDWLVCSLDNGAESLNRLITYEHRLQASYEVAAGNIIRSLRSLARGEWESVFEQICVAERALREERAGTYALMTAESRHTLRTRVERLAQRMRVPENLIAERAVMLAGRHADDTEAGASESVDGKPGPNAPLPPRSAYVAYYLLDPAGMAELQRSLRECADPRRMPETFVLRRGSAAYFTLLAGLFAAALTLFAIWSDRGAALGPGLQALLLLALIMPAGEWAVTIAHGLIRRTFRSRPLLRYDYASGVAPDAATIVVVPVIWSRPEEADELADRLELHYLANRDPNIYFALLGDFADADEERKETDEAVLARARERIEALNRTYSDGEGGRQPFLLLQRHRKWNPSENVWMGWERKRGKLVEFVELLRGGKETSFGVIVGNRDILSRIRYVITLDADTQLPIGSAQRMIGTIHLPYNRPRLNAAGTRVAEGYGVLQPRIGVSYASVQESRLTRLWAGEPGIDPYAFAVSDPYQDALGQGIFTGKGIFDAEVFARVLSDRIPDNRVLSHDLLEGGFLRGGLLADIELIDGHPASFRAHQRRLHRWVRGDWQLLCWLMPRVCDRHGRLRPVDLPALTRWQMIDNLRRSLLQPALYALLLLGMLLPPPAGGSAVAIALATIAMPVVRAIVAPARLVRRPGLLLPAAGQAAVTLAALPHQSALLLDAIGRTLFRLFVSKRRLLEWTSSAETERRSRKEKLQLSGYRAGVALTLLFAAAAAFAPVPWLRWTGLAIAVIWLAAPLVAGWLSRSPASAPEALKDSDKDELRAVAEEIWKYYEEYAGERDHWLPPDNVQIDPPTGAAHRTSPTNIGLMLASTLAARDFGFIGTPELIERVERTVGTIERMDKWCGHLYNWYDTTTLRPLPPVYVSTVDSGNFVAYLIVVKEGVTEWAARDSEGEWRERAERLAARIERLISDTDFRPLYDERTQLFALGYHAGLKQRETILYDLLASEARQASFLAIATGQVPPSHWFKLGRAMTRSGKHPTLMSWSGTMFEYLMPALVMRTYRNTIWDATYRGVVRRQIDYARQRGVPFGISESGYYAFDYRMNYQYRAFGVPGLGFQRGLDEELVVAPYATIMALPYAPREALADLRRMAAAGARGKYGYYEAIDYTEKRMPDQRDRMVVRSFMAHHLGMSMLTLGNLLLPYKMYDRFHRDKRVQAAELLLQERVPEKPAIVSDASARFKTRQPANREEAVMPLREFDTPHTPVPEVCVLSNGSYTTVVTNRGGGFSRYDGIAVSRWREDPAADPPGQCMYIRDVESGDVWSPAYGPCMTPSSDQRAQFSLEQARFLRRDGEIATELDICVSPESDAELRRLTLTNEGDRTRILEVTTYVELALAPPAADDAHMAFSKLFVQTEYDEAAGCLLAVRRPRTEDEQPRWAAHTLTAGCEPLGPVEYETDRSSFIGRGHTLARPQGLASRLTETVGAVLDPVFVMRRRVSVGPGERVSLFAATGVAGERGEAVEIVRALCGAQQAERTFQLAWTRSRIDLRHQRLTAAEATQFQTLAGRLLYPAPLRKDRAKAIAANVKSQSGLWPLGISGDLPIALVRIRDSAHLSFAAKMIAGHGYLRRLGLPFDLVLLNESDDGYQQDMQEALRRAIEQSADYPHPQPGGVYLVAASQIADAEKTLLLAVARVTLRADGPSLGAQLRVKAAGNRPAEQRPVMTAAGSAPPREAPDAAEDPEDWELFNGWGGFSPDGKEYRIALRGGKYLPAPWSNVLANRSFGCLVTELGTGYTWWRNSREFKLTPWSNDPVLDPPGEACYIKDEETGDIWSPAPSPTLEPANCTVAHGRGYTRFRRLCRGLRQQMTVFVPREDAVKIVELQLENVADSPRTLSVVYRCDWVLGVRRPDSAPHIVSEWDSTAECLLARNTYQDTFRDAVAFLHVHDKDGAAAADEPDEAGMRAQADDRLSYTADRAELYGPGGSPERPAGLAGDRLSNATGPHADSCGAIRLRLELAPRSVRKVYVLLGAAPSREEAVRLVREYGSAEACETAFADMRDYWDGILDQIVVKTPDKEMDLLLGGWLLYQTLSCRMWARTGFYQAGGAYGFRDQLQDSLALLHTRPDLTRAQILLHAAHQYEEGDVQHWWHDETGRGIRTRYSDDLLWLPYAVSRYIAHTGDESVLDEIVPYLHSPPLEEHEHERYEETVRSPQSGTVYEHCWRAIERAYRLGENGMPLMGIGDWNDGMNSIGDLGRGESVWLGWFLCDVLERFAAICELRGEAARALTCRNRRQAIADALNERAWDGEWYRRARADEGHWIGSNRNEEARIDAIAQSWSVISGAAPRDRALKAMRSFDRELVDRGLAVARLLTPPFDRTDPNPGYIQGYPPGIRENGAQYTHGVIWSVVAWCMLGDGNKAAELFHMLNPLAHARSPGDVRTYAGEPYVMAADVYTSAPHEGRAGWTWYTGSSGWMYQAGIEWILGLRREGGKLIVRPCIPDDWPGYTAIYRFGTTNYRIVVRNLAGGALPPDPDGRDDAAEMPETPESDAHIRLEGDPDTGVSFELSDDGRQHVVTVMLRPRTAQPDAGQPSAAAGKALPHT
>NZ_CP013653.1|WP_145977322.1|1165683_1166658_+|ABC-transporter-permease-subunit
MNTIRPDRPLPPPIQPASRGLRARRLLRRLAAQRYLQAMALLGVAWMVVFNYIPMYGIVIAFKDFSIIRSVAEAPWVGLEHFKAFLEDEELPNVIRNTLGISVIKLVIGFPLPILFALFLNELRSLRFKKSVQTISYLPHFLSWVILGGILATWLADVGIVNKLLLSLGLISEPVSYLAEPSYFWTIVIASDIWKELGWSAIIYLAAIAGVSPELYEAATIDGAGRFQKMWYVTLPGIKGTVTILFILAVSGVLNSNFDQILVLRNPLNESASNVIDIYVYQTGLLNARYSYATAVGLIKSVIALMLLLAANTVTKKLNQSSLF
>NZ_CP013653.1|WP_062491023.1|1166679_1167567_+|carbohydrate-ABC-transporter-permease
MLMLKRKTAGESVFDAVNILGMLLICFLTIYPIWYVLVNSFNDGQDAMRGGIYWWPRVFSFDSYQAVFASPGIMTAMGVTVAKTVVGTAAHVFFTAMVAYAVSRKELIGRNLYMTVGTITLFFGGGLIPYYLLIRDLHLLDSFLVYIIPAMFSFFHLIIFLSFFRDIPEGLEEAARIDGANDLSIFCRIIIPVSMPVVATIALFHGVYQWNDYFTGMIYINNQDLQPIQTFLYRVVAQSSSNQMVAAMPGGISKSVTSQSVKLATMVVTTAPIVFVYPFLQKYFVRGLMIGSIKG
>NZ_CP013653.1|WP_062491025.1|1167616_1169305_+|extracellular-solute-binding-protein
MANDRAKKLLALALIFGLVFALAACSGGGSTAGEDQGAAKKEPAGETPKEESQPANPDEPGWKADTSPITFDWYLNFSWFPNKWGVDPTSQYVTKKTGVDINFIVPAGNENEKLNTMIASGKLPDFITLGWYEDGVQAMIDGGLVLPLNELAEQYDPYFFKVADPAKLSWYTKDDGNVYAYPNASSSPKDFEKYSREYTSNQTFVVRKDMYEALGKPDMRTPEGFLNALKAAKEKFPDVNGQPLIPIGLHEFSETGNYSLEGYLQNFLAIPMEKDGKLYDRVTDPEYIRWLKTFRKAEEEGLLAKDIFIDKRPQMEEKIAQGRYFAMLYQRSDFAAQQNVLYANDPNSVYIAVDGPANSNMDPPTLAGPGISGWTVTLISKDVKDKERAIRFLTYLISEEGNKDLYLGEKGVTYDTIDGKDQFKPEALELLNKDRSAFDKQYGASYTFWMLMDTNMNLQWAPPSVEPAKQLEDWTKGKTKSFSQFDQINPTGNSEEGIANTKIAQLWGKTLPKLLLAKTDEEFDKLFDEFLKKREEAGYEKVRAYQQQKYEENVKRLEEFLK
>NZ_CP013653.1|WP_082655519.1|1169403_1171284_+|sensor-histidine-kinase
MFRRPGSALERWLVRIGQLSLQKRLFIIYILIILLPGVLISVPVFNQLSHKYLEDVRKTNITALEFETVNIARSIETMERAAQLAVSDKDILYYLEQTSEPNTSELIDFNRNAVANLLRLQYNNPNVEHIRLYAESPFVIEIWPVFIQASRIRGEPWYEKVREQNGKELWTFDRQDRDPILRNVDAEKVNRPKISLLREIEYPIGRDVGIMQIDMLLANFFPNTFRDAHDGQSQMFVVDGDGRFYYDTSSPFLNRTGLSTQQLASRLESREPGVHSVTFTAGNRPFLCAYVYNERIGAYLMRVASLENALAAVNQTRNGMLAVILGLFAVLSAATYFLLSYILKKLRVLTESMKKVRQGDFNFDLSIKGGGEVGELAHHFRKMLKKINELIAEAVTKNAATKEAELKSLKNQIDSHFLYNTLENIKMLAEIENQPAISDALTSLGGMMRYNLQWTSEYVPLRDELNHIANYVAIMNIRFAEKIVIVNEIPDMYLDRQLLKMSLQPIIENAVQHGAAPSRKRDLTVTLRARTEGDAMIIELTDDGAGMPEQKVEALNRMFAEDDPERSAYCGQRADRPARGGIGLRNVNQRMKLFYGKAYGLRAESKEGEYTRICMSVPYIDSGGEL
>NZ_CP013653.1|WP_062491031.1|1171286_1172894_+|response-regulator
MRTLLIVDDEPNIRFGLKAMIEREQPGRYDFCFASDGEEALVHMRSRTIDLVITDIRMPGMDGLALIREIRSCSSAPEVLILSGYDDFQYAKEAIRYGVKEYLLKPIVREELFKALERAGNELDRQREVAGRLNALDRARDELLAAQLNYIWLHPDIGEEEVERRCADIGLSAFEPLYYVGILRCPAGERCLAAARRCLAAAVKESGDGAAASARTRAVAAEDKDGQLVFVTNDAALPDVLMAHLAAERHDRSCIGFSAGLRRIGELKRGFQQASRALKYRLLLSGAAGRVIRYDSVKEQGRDYIVPVEAIRKLANMLGTDRDSEMKALLAELLDANRLARYDIALTERISAALNEHVFDQAFNRYGEESVEIIRMYKQAGDLCRFETIRDYHRCVEDLLLRLNDYIRGLRSVFGEHQELRRAVEYIHDHYDRDLNMATVSNHVSLSYTYFSQAFKEYTGESFVVYLKKVRIGKAKELLVRTDDKIYEIAAKVGFDSVKQFNRVFRELEGVSAQEYRTVRRELRESRQHSPFPRV
>NZ_CP013653.1|WP_082655073.1|1172787_1173765_-|alpha/beta-hydrolase
MRRDIRLWTWRGEPFEYSVVGEGKPVLMMHGGHSNCREEFGYRELTAAGYRLITPSRPGYGGSSKAIGRTLDEACEAYAGLLDHLGADAAHVIAFSAGGPSGIRFAGLYPERVRSLVLLSAVTGQWLTPDHREYKMARILFGPWLERYTWLALRLASNIWPRFGFRLIARNISLLPPKEIERRMGPLDIEAVRRMNNRQRSGSGFALDLKQAGQLRKADLEAVRAPALIVHSPWDMSVGIRNARYACEHIPHAEFAEADAWGHLIWLGRGGGAVDRACVDFLRRHDGTAPFRPAETGNAGGFPEAPAGRSGTPAPKRPPVPETRG

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Crispr_ID: NZ_CP013653_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013653_3

1684245-1684394

TypeIII

Consensus_repeat	Method
GCGAACCATGGGCGGTCGGTAACA	CRT

3 spacers

The CRISPR arrays of NZ_CP013653_3

>merge|NZ_CP013653|3|1684245-1684394|CRT
GCGAACCATGGGCGGTCGGTAACAGCAGAGTGGGCTTTGCCGGCGAACCATGGGCGGCCGGTAATAGTCGAGCAGTCTATGTCTGCGAACCATGGGCGGTCGGTAACAGCAGAGTGGGCTTTGCCGGCGAACCATGGGCGGTCGGTAACA

>NZ_CP013653|3|2|1684245-1684394|CRT
GCGAACCATGGGCGGTCGGTAACA	GCAGAGTGGGCTTTGCCG
GCGAACCATGGGCGGCCGGTAATA	GTCGAGCAGTCTATGTCT
GCGAACCATGGGCGGTCGGTAACA	GCAGAGTGGGCTTTGCCG
GCGAACCATGGGCGGTCGGTAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013653.1\|WP_062491780.1\|1681394_1681727_+\|UxaA-family-hydrolase	unknown	unknown	gnl\|CDD\|212158
NZ_CP013653.1\|WP_062491768.1\|1674682_1675642_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|238571
NZ_CP013653.1\|WP_062491786.1\|1685147_1685888_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP013653.1\|WP_082655127.1\|1696129_1697158_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP013653.1\|WP_062491794.1\|1690346_1691441_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227688
NZ_CP013653.1\|WP_062491789.1\|1686962_1687655_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062491773.1\|1677749_1678472_-\|glucosamine-6-phosphate-deaminase	unknown	unknown	gnl\|CDD\|238693
NZ_CP013653.1\|WP_062491800.1\|1692323_1692962_+\|XTP/dITP-diphosphatase	unknown	unknown	gnl\|CDD\|184835
NZ_CP013653.1\|WP_062491782.1\|1681723_1682884_+\|UxaA-family-hydrolase	unknown	unknown	gnl\|CDD\|377287
NZ_CP013653.1\|WP_062491775.1\|1678671_1679745_+\|type-2-isopentenyl-diphosphate-Delta-isomerase	unknown	unknown	gnl\|CDD\|235465
NZ_CP013653.1\|WP_062491778.1\|1679789_1680803_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP013653.1\|WP_062491791.1\|1688173_1689583_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP013653.1\|WP_082655126.1\|1674215_1674635_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062491788.1\|1685884_1686904_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293811
NZ_CP013653.1\|WP_062491771.1\|1676568_1677753_-\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|238434
NZ_CP013653.1\|WP_062491770.1\|1675644_1676442_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP013653.1\|WP_062491803.1\|1694848_1696126_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223687
NZ_CP013653.1\|WP_062491796.1\|1691580_1692327_+\|ribonuclease-PH	unknown	unknown	gnl\|CDD\|178914
NZ_CP013653.1\|WP_062491792.1\|1689677_1690205_-\|phosphatidylglycerophosphatase-A	unknown	unknown	gnl\|CDD\|224186
NZ_CP013653.1\|WP_062491784.1\|1682913_1683708_+\|3-oxoacyl-ACP-reductase-FabG	unknown	unknown	gnl\|CDD\|235500

Protein	Function_ID	Function_description	E-value
NZ_CP013653.1\|WP_062491780.1\|1681394_1681727_+\|UxaA-family-hydrolase	gnl\|CDD\|212158	cd11613, SAF_AH_GD, Domains similar to fish antifreeze type III protein. Altronate dehydratase (EC 4.2.1.7) converts D-altronate into 2-dehydro-3-deoxy-D-gluconate and is part of a bacterial pathway for the degradation of D-galacturonate. D-galactarate dehydratase (EC 4.2.1.42) eliminates water from D-galactarate to yield 5-dehydro-4-deoxy-D-glucarate, initializing the degradation of D-galactarate. The function of the SAF domain in these enzymes is not clear. It may participate in dimerization.	1.07291e-31
NZ_CP013653.1\|WP_062491768.1\|1674682_1675642_+\|sugar-kinase	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	1.87326e-110
NZ_CP013653.1\|WP_062491786.1\|1685147_1685888_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.54284e-28
NZ_CP013653.1\|WP_082655127.1\|1696129_1697158_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	6.76092e-90
NZ_CP013653.1\|WP_062491794.1\|1690346_1691441_+\|hypothetical-protein	gnl\|CDD\|227688	COG5401, COG5401, Spore germination protein [General function prediction only].	6.14063e-24
NZ_CP013653.1\|WP_062491773.1\|1677749_1678472_-\|glucosamine-6-phosphate-deaminase	gnl\|CDD\|238693	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.	9.87013e-126
NZ_CP013653.1\|WP_062491800.1\|1692323_1692962_+\|XTP/dITP-diphosphatase	gnl\|CDD\|184835	PRK14822, PRK14822, XTP/dITP diphosphatase.	6.24127e-95
NZ_CP013653.1\|WP_062491782.1\|1681723_1682884_+\|UxaA-family-hydrolase	gnl\|CDD\|377287	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus. Family members include the C termini of D-galactarate dehydratase (EC:4.2.1.42) which is thought to catalyze the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, and altronate hydrolase (altronic acid hydratase, EC:4.2.1.7), which catalyzes D-altronate = 2-keto-2-deoxygluconate + H2O. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core.	0
NZ_CP013653.1\|WP_062491775.1\|1678671_1679745_+\|type-2-isopentenyl-diphosphate-Delta-isomerase	gnl\|CDD\|235465	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional.	5.86861e-166
NZ_CP013653.1\|WP_062491778.1\|1679789_1680803_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.00721e-124
NZ_CP013653.1\|WP_062491791.1\|1688173_1689583_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	0
NZ_CP013653.1\|WP_062491788.1\|1685884_1686904_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293811	cd07725, TTHA1429-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1429 and related proteins; MBL-fold metallo hydrolase domain. Includes the MBL-fold metallo hydrolase domain of uncharacterized Thermus thermophilus TTHA1429 and related proteins. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.00802e-51
NZ_CP013653.1\|WP_062491771.1\|1676568_1677753_-\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|238434	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.	1.03989e-160
NZ_CP013653.1\|WP_062491770.1\|1675644_1676442_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	5.07817e-76
NZ_CP013653.1\|WP_062491803.1\|1694848_1696126_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223687	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism].	2.80473e-53
NZ_CP013653.1\|WP_062491796.1\|1691580_1692327_+\|ribonuclease-PH	gnl\|CDD\|178914	PRK00173, rph, ribonuclease PH; Reviewed.	1.2728e-168
NZ_CP013653.1\|WP_062491792.1\|1689677_1690205_-\|phosphatidylglycerophosphatase-A	gnl\|CDD\|224186	COG1267, PgpA, Phosphatidylglycerophosphatase A and related proteins [Lipid metabolism].	1.45164e-50
NZ_CP013653.1\|WP_062491784.1\|1682913_1683708_+\|3-oxoacyl-ACP-reductase-FabG	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	4.19396e-88

>NZ_CP013653.1|WP_062491784.1|1682913_1683708_+|3-oxoacyl-ACP-reductase-FabG
MQRLKDRIALVTGGSRGIGEAIVIRLAEEGAHVAINYTSASSRELAESVKARVEALGCRAIVVRADVGNKAQVEAMFEQVERELGEVEILVNNAGVAPFEPFLKATEETWDRTINTNLKSIFLCSQRAAKRMVERRYGKIINVLSTASVVVTSPVIPHYQASKAGAHMLTKGMAIELGRFNINVNAVGPSTVDTDMCADFLNDPEQRRREEEANPMKRLGTARQIGDAVVFLASEEAMQVNGHLLMVDGGLSVKAAQPEDHMER
>NZ_CP013653.1|WP_062491782.1|1681723_1682884_+|UxaA-family-hydrolase
MKTFKGYARANGDFGIRNHLLIIPTVICANQVCSRIEQMVPDTVAIPHQHGCSQIGADKDRTFDVLAGTGRNPNVGAVLIVSLGCEVVDPQALADAIRETGKPVEWFDIQSAGGSIKAIQHGVELARRMRAELDRAEKVDVPFSKLRIGVKCGGSDATSGLASNPALGVAADAIIADGGAVVIGETTEIIGAEHLLAERCVTPDVSSKLYSIVERFEREVERAGADMRGGNPSPGNIAGGLSTIEEKSLGCISKCGTAPIRAVIEYAEQIPNGGLYFMDSPGNDIECVSGMAAGGAHLVCFTTGRGTPTGSAVVPVIKITANAQMYRRMEDNMDVDVSGLLTGAFDLREAGRRIEREIREVADGKLTKAEILGHREFSINRIGPSL
>NZ_CP013653.1|WP_062491780.1|1681394_1681727_+|UxaA-family-hydrolase
MAEHVQVGADVIVMNAVDHVATALRDLQAGETLSYTIEGRTNTIAVMEAVPFGHKIAIVPIAEGDSVRKYGEVIGRATRAIEPGHHVHVHNIEGIRGRGDKARKEGEAPV
>NZ_CP013653.1|WP_062491778.1|1679789_1680803_-|LacI-family-transcriptional-regulator
MVTIYDIAKKANVSAMTVSRVINNTGRISEKTRLKVQKVMEELHYVPNATARSLVLQRTMTLSLLITDITNPFYTTVARGAEDAARENGYKLLLGNSDESVDKEREYIDTVLSTRVDGVLITPSGDRSRPHLETLARHGIPFVILDREVPGIACDCVLGDSVGGARKLVDYLIGLGHRRIALVNGSPEVSTARDRLAGYRQALAERGIGFDPAYVMESNYRPQDAEAAAERLLSLSPSPTAVFAANNLLALSLLQSLRKRGIGVPEELSIVTFDDFGYMSVLDPFFTLVAQPAYEFGRQGISLLIERIENRDAPPRRIVLPNELTTGRSVRPAAPSA
>NZ_CP013653.1|WP_062491775.1|1678671_1679745_+|type-2-isopentenyl-diphosphate-Delta-isomerase
MTVGREQREKREDALTAKRKGEHIRICLEERVEGEGVTTGFEKYRFVHNALPELDFESIRTETRFLDKPLRVPLLVSSMTGGTAAAASINRRLAEAAEARGWAIALGSMRAAIEREELAATFRVRKEAPNAPIIANLGAVQLNCGYGADECRRAVELAEADALVLHLNGMQELFQPEGDMNFGGLLRRIAEVCRTAGVPVGVKEVGFGFDADTAAALHEAGVAFLDVAGAGGTSWIQVEKFRSTDGLRRKAAEAFADWGLPTSDCVKEVRDRLPDAYIIASGGLHDGVEAAKAIALGADLAGFGRTLLRNAASSDGTEPLEEQFERIEFELRATMFGIGASTIEQLRTTNRLRRLPT
>NZ_CP013653.1|WP_062491773.1|1677749_1678472_-|glucosamine-6-phosphate-deaminase
MEIRIFDDQSELDRYAASLFAETVRRKPDAVLGLATGSTPIGIYEKIVEEHRRGLSFREVTTFNLDEYVGLPRNHEQSYYTYMQKHLFAHIDIRPENVHLPNGTADDLAAECARYDALLAKHPIDIQLLGLGHNGHIGFNEPDESLIGETHVVELKRETLEANARFFASIRDVPTHAVTMGVGAILRAKTIVLAARGTDKARIVKEALQGPITTKCPASLLQTHAHVIVLLDREAGRELE
>NZ_CP013653.1|WP_062491771.1|1676568_1677753_-|N-acetylglucosamine-6-phosphate-deacetylase
MTKQSQESWRITNVRIVADEEIISGSLVVAEGKIAGVYPEGSDVPAAYGELPVVDGEGGWLLPGFIDVHVHGGNGAEFMEANREAFDRITAFHAANGTTCMLATTVTAPHDETEAVIREVAAYRAGDMPYAALHGVHLEGPFISERWPGAQNPAYIVDPQPAWLEDWMARWPDTIRLLTLAPERRGAGDLIAMLAERGVIVACGHTDSGYDDIIAAVDRGLSHAVHTFNAMTPLHHRKPGTVGAVLTDPRICAEVIADGHHVHPAAIRLLVAAKPADKLLLITDAMAAAGLPDGEYKLGELPVVVKDGAARLKDGDTLAGSTLTMIGALRFMVEQVGVSVQDASRMASGNPAKQLGIADRTGRIAPGLQADLVWTDERFAVRQTWVKGRTVARA
>NZ_CP013653.1|WP_062491770.1|1675644_1676442_+|DeoR/GlpR-transcriptional-regulator
MAETQSSRSHRRREAVMELLKRQGRITVQEMVDRFGCSEATARRDLELLEKTEPIIRTIGGAMYDGWNAARDLAFSERQGLSYLEKERIARLASTLIAEGDVVGLSGGTTTYLLAKLLKTRKGITVVTNAVNIAMELAGSDIQVLVTGGIMRHNSFELCGPLGEDTVSRLNIGKMFIGVDGISAAGGITTYSEQEAQIAKALIARSQATYVLFDHSKVGKTSLFSIAPLSGVQVCITDAPLPSELLEAVRTSGIAVHIAADGDNG
>NZ_CP013653.1|WP_062491768.1|1674682_1675642_+|sugar-kinase
MKQQLSPDLVTFGETMGLFMPPEHRALERSALLEQSFGGAESNVAIGAVRLGVSAGWFGVLGDDPFGRIIKKTLRGEGVDVSRVRLDGEAPTGLMFRETVAGKLAVHYYRKHSAASRMRPEHLDADYIRGSKILHVTGITAALSPECRATVREAVRIAREAGVAVCFDPNLRLKLWTIEEARQTLLPLAEEADYFLPGWDELRLLYDSDDFGTIADKLSALKAVTVIKGKDDRTIVLNRGQRTEVPFYPAERVVDTVGAGDGFCAGFLAGILKGMPPEEAVRLASIVGSLVVQMRGDWEALPEWPLVEQRLNNEAWVER
>NZ_CP013653.1|WP_082655126.1|1674215_1674635_+|hypothetical-protein
MSNVMWFLHLLGAVGMGFYIVLPVLLGKAPKLAGGGQEGLAEGLSSANRIAQYFLVVQLLTGGYIMSQGNYSPLWMVLVTVLFLGIAAVSGMMSKPLKQIVGSIRENRSATAYIAKARAMSFAVLIMYLVIIYLMKFPF
>NZ_CP013653.1|WP_062491786.1|1685147_1685888_+|class-I-SAM-dependent-methyltransferase
MPEWYEKSFGSDYMVVYRHRDRENAEREVRNMAGWLALPPGAEVLDVGCGMGRHALSLADLGYRVTGLDLSETLLAEARAKDEGSRVEWVRGDMRRLPFADGRFDVTVNLFTSFGYFTDERDNCAVLRELRRVLRPAGQFLIDYLNPVFVERNLVPHSERVDPETGWTIEERRRIEDGFVIKTITIRTEDEERHYEERVRLLGRDWFERALAEAGLELRRIYGGYDGQPYEQATSPRLILIGRAAR
>NZ_CP013653.1|WP_062491788.1|1685884_1686904_+|MBL-fold-metallo-hydrolase
MNGAGGRREPVTAWPDGWLQIKVPLPFSLRWVNAYLLPEPGGGWTLIDPGLHTEEAVALWEAVLKERRIGFGSIERIVLTHQHPDHYGLAGWFQERSGAPVYMSRAARDYTLRLWGPKRSFETDLNALFKAHGMPDVLREGIAGHLESFVAKVSPKPAVDFIEAGGRIAMNGLDWETIAAPGHARGQLLFYQRESKRIICGDQVLPRITPNIGLVPGPDEESNPLRAFLDHLTELAMYDVKLAFPGHRDPFPNFADRIAELIAHHERRLQEIAAMLAEPLTGYEVCIRLFGARIADDMHHLRFAMAETLAHLVELEAAGAAVRTEQGGVARFRATANIY
>NZ_CP013653.1|WP_062491789.1|1686962_1687655_+|zinc-ribbon-domain-containing-protein
MKYCTQCGVPIADDAGTVCENCGGGQTAAEGAASFQTNRPEAYAALARNYLFHPLQALGDMAAVRSFVPGLVAAGTAALILAVVVLVYLHQTVGALSFIFGGIGGFNGFDVPYFSLFVRVLFGALLQWLLLSGVIVGGAKLFRMPAENVQAFNMAGLTKLYFAAAALASMVLGFIHPWLGLSVLAGGLVLSAHVLYKGMRAVSGDVPFYFVPAMLTAYYILLGALFRLMF
>NZ_CP013653.1|WP_062491791.1|1688173_1689583_+|group-II-intron-reverse-transcriptase/maturase
MRSHEEQRQQNIPQGSSRQRDTVKPEGYAGAPSSSSAQVAPSSREDRDDLLERMLRRENLLLAYKRVVRNGGAPGVDGVTVAELQAYLKTHWETVKAELLAGTYRPSPVRRVEIPKPGGGVRLLGIPTVMDRLLQQALLQVMEPIFDPHFSWYSYGFRQGKRAHDAVLQAQRYIQSGLRWVVDMDLEKFFDRVNHDILMARVARRVTDKRVLRLIRAYLNAGAMLGGVCQKTEEGTPQGGPLSPLLANILLDNLDKELTKRGLRFVRYADDCNIFVASKRAGERVMESVTRFVEGKLKLKVNRDKSAVDRPWNRKFLGFSFLSNRNATIRLAPKTISRFKEKVRELTNRSKSASMEERIYRLNRYLMGWLGYFRLASAKNHLTSFDQWIRRRLRMCLWKQWKRVRTRIRELRALGVPKWACFVMANSRRGPWEMSRNTNNALPTSYWEAKGLKSLLSRYLELRQPYGTA
>NZ_CP013653.1|WP_062491792.1|1689677_1690205_-|phosphatidylglycerophosphatase-A
MSEPKAYSLDSRQVAEATEQWLAKRGVTKTEIADLAYFLQKDYFPELTIEECLENVDAVLSKREVQNAVLTGIQLDILAEEGKLMSPLQEMIRNDEGLYGCDEVLALSIVNVYGSIGFTNFGYIDKLKPGILLKLNNKTDGQTHTFLDDIVGAIAASASSRIAHRKQAEREDTID
>NZ_CP013653.1|WP_062491794.1|1690346_1691441_+|hypothetical-protein
MTQYRWIRRTALAGALMLPVFMAGCGWLSQETSKEIDPPPAESGNTQQDGQIDGNAGEQAQGADDGQAAATQGDQTQLTVYLRDGNGYLTPVTLNTALEQEAQAGQRALEMMVEGGRYANLLPEDFTPVLPQGTEVLGYNLVKDQQLAIVDFSKPFTEYNAEDERKIVEAVTWTLTSLPDVKQVEIRYEGEKLNEMPVDGFPLDEPLTRAVGINLEWDDGVDYTRSTPVTLYFSSQTADAEQYFVPVTRLINRTDDTAKAALEQLIAGPLDGSDLIGVMTPDVQVNRLESKDGTVTVDLLELGYDESQKPPAEMLEAVVLSLAENTGADKVQIMLNGKTGITDTKGMSYSEPVSKPEHVNALES
>NZ_CP013653.1|WP_062491796.1|1691580_1692327_+|ribonuclease-PH
MRTDGRKPDQLRPVNVTLGVNKYAEGSVLIEVGDTRVVCTASVEERVPPFMKGQGKGWITAEYAMLPRATQTRNQRESAKGKLSGRTMEIQRLIGRALRSVVDLQALGERTITLDCDVLQADGGTRTTSITGSFLALALAVDKLSGTASFPRYPITDYLASVSVGIVGEEPVLDLHYEEDSKAKVDMNVVMTGSGKFVEVQGTGEEAPFSRSELDAMLGLAERGILQLVELQKQTLGELGRRIGEVSP
>NZ_CP013653.1|WP_062491800.1|1692323_1692962_+|XTP/dITP-diphosphatase
MTGRMREIVIATRNPGKAREFAHAFAALEVAVKSLLDYPSIPDIPEDGSTFADNARIKAKTASELLGVPALADDSGLCVDALDGAPGVYSARYAGEGASDADNNAKLLAELTGRGAETLGTLPDGTRLLSRGRFVCVLALYDPERGAFIEAEGEAAGFIADRPRGSGGFGYDPLFWLPELGRSMAELTQEEKRAISHRGKALEALLNRLQER
>NZ_CP013653.1|WP_062491803.1|1694848_1696126_+|ABC-transporter-substrate-binding-protein
MFRKVLAHGLLALAVLAAPLAIGKEEASAAAASNTAIKVKLDGKSVSLDTQPRIVKNRTLVPYNNIVHALGGKASWNAKSKTVTAERDGVTVKLSVGSSVAYINGEKLDMGVAPLFVNGKTFVPLRLISEAFGKWVSYNKASSTVEITSKLTVQTSTGPFTLNKKPSRIVTLSSSDTEIIYALGGKVVGRPTAMGKVIPEAAASAVEVGSVHGILFEKLATLKPDLVIASPSLQTQKATIERLGAQVMFNSHNTFDDIQKSVRLYGKVLGQESKAEQIIKEMNSKVSKLVKPKNKPKTLIVYGAPGSFVIALPTSYPGNFLELAGGSNVAASFPIMDTMPQYAELSMERVVAANPDLILLITHGDADEVKKSFKQQFESNSAWKNLAAVKNDRFEVLPSDLFAANPGIRAPQAIETINKLLKAAN
>NZ_CP013653.1|WP_082655127.1|1696129_1697158_+|iron-ABC-transporter-permease
MTSLASKSNVQIIKDPRYIRNIGLLVGGIVLLLAAVLVGLMAGAISLPAAEVWTALVRDSDSEARQIVWNLRLPRVLTGMLAGACLATSGAFLQGVFRNPLADPGIIGVSSGGGLAAVVIMILFPAQIAYLPMAAFFGALGAAVVVYILAWKGGASPLRLILAGVAVNSLLGAGMTTLMILNSEKVQAVLPWMSGSLNGRSWPHFDALLPYTIVGGLASIFLIKQANLLVLGDDTAKVLGNRVETGRLLIILLSTFLAGAAISIVGMVGFVGLVVPHIVRLLAGGNYRILLPLSAIGGAALVVMADTAARSWFDPIEFPVGILLALLGAPFFLYLLRKGLGK

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Crispr_ID: NZ_CP013653_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013653_4

1693794-1694703

TypeIII

I-C

Consensus_repeat	Method
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	PILER-CR
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CRT
GTCGCTCCCTACACGGGAGCGTGGATTGAAAC	PILER-CR

13 spacers

RT,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11

The CRISPR arrays of NZ_CP013653_4

>merge|NZ_CP013653|4|1693794-1694703|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTCGCTCCCTACGCGGGAGCGTGGATTGAAACTACGTCGCTCCCGTAGATATGCCCAACGTCCTCCGGTCGCTCCCTACGCGGGAGCGTGGATTGAAACAAAATTAGCGGGCGGACTGATGCACAGCTTACCCGCGTCGCTCCCTACGCGGGAGCGTGGATTGAAACTTTGAACGCCTTGATTACTGTTGCCACCATTTCACGTCGCTCCCTACGCGGGAGCGTGGATTGAAACACTGTCCACCCTCCCGCTTTTTTACGTACTGGTATGGTCGCTCCCTACGCGGGAGCGTGGATTGAAACGAAATCGAACCGATCAGCACCGACCCGCGATTTTGTCGCTCCCTACGCGGGAGCGTGGATTGAAACAGGCTGTTTCCTACCCGGGAAACGCCCGGATCAAAAAGTCGCTCCCTACGCGGGAGCGTGGATTGAAACAAAGATTGGATGAGCTTGGCCGAAAAAGCTGCGGGGTCGCTCCCTACGCGGGAGCGTGGATTGAAACGCTATAATCCGGCTCAAACTCCGGCACGTCTTGGTGTCGCTCCCTACGCGGGAGCGTGGATTGAAACCCATGCTCCGACACCAGCAATAATCTGCGTCGTCCGTCGCTCCCTACGCGGGAGCGTGGATTGAAACTGCGTCGTACCTCCCGACGAGGTTTGTACAACTTTTGTCGCTCCCTACACGGGAGCGTGGATTGAAACTGAACCTCGCGCAAAACCTCGGGCGAAACCGGAACAAGTCGCTCCCCGTGCGGGAGCGTGGATTGAAACGTGAGGGAAATGAACGATTTTACTCCTGATGCGTCTCATCGCTCTCTACGCGGGAGCGTGGATTGAAACAATCTCGGCTTTTGAAATCCCATAAAAACGTCCAGTCGCTCCCTACACAGGAGCGTGGATAGAAAC

>NZ_CP013653|4|1|1693794-1694431|PILER-CR
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	TACGTCGCTCCCGTAGATATGCCCAACGTCCTCCG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AAAATTAGCGGGCGGACTGATGCACAGCTTACCCGC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	TTTGAACGCCTTGATTACTGTTGCCACCATTTCAC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	ACTGTCCACCCTCCCGCTTTTTTACGTACTGGTATG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	GAAATCGAACCGATCAGCACCGACCCGCGATTTT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AGGCTGTTTCCTACCCGGGAAACGCCCGGATCAAAAA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AAAGATTGGATGAGCTTGGCCGAAAAAGCTGCGGG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	GCTATAATCCGGCTCAAACTCCGGCACGTCTTGGT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CCATGCTCCGACACCAGCAATAATCTGCGTCGTCC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAACTGCGTCGTACCTCCCGACGAGGTTTGTACAACTTTTGTCGCTCCCTACACGGGAGCGTGGATTGAAAC	TGAACCTCGCGCAAAACCTCGGGCGAAACCGGAACAA
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	GTGAGGGAAATGAACGATTTTACTCCTGATGCGTCTC
ATCGCTCTCTACGCGGGAGCGTGGATTGAAAC	AATCTCGGCTTTTGAAATCCCATAAAAACGTCCA


>NZ_CP013653|4|2|1693794-1694703|CRISPRCasFinder
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	TACGTCGCTCCCGTAGATATGCCCAACGTCCTCCG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AAAATTAGCGGGCGGACTGATGCACAGCTTACCCGC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	TTTGAACGCCTTGATTACTGTTGCCACCATTTCAC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	ACTGTCCACCCTCCCGCTTTTTTACGTACTGGTATG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	GAAATCGAACCGATCAGCACCGACCCGCGATTTT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AGGCTGTTTCCTACCCGGGAAACGCCCGGATCAAAAA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AAAGATTGGATGAGCTTGGCCGAAAAAGCTGCGGG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	GCTATAATCCGGCTCAAACTCCGGCACGTCTTGGT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CCATGCTCCGACACCAGCAATAATCTGCGTCGTCC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	TGCGTCGTACCTCCCGACGAGGTTTGTACAACTTTT
GTCGCTCCCTACACGGGAGCGTGGATTGAAAC	TGAACCTCGCGCAAAACCTCGGGCGAAACCGGAACAA
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	GTGAGGGAAATGAACGATTTTACTCCTGATGCGTCTC
ATCGCTCTCTACGCGGGAGCGTGGATTGAAAC	AATCTCGGCTTTTGAAATCCCATAAAAACGTCCA
GTCGCTCCCTACACAGGAGCGTGGATAGAAAC

>NZ_CP013653|4|3|1693794-1694703|CRT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	TACGTCGCTCCCGTAGATATGCCCAACGTCCTCCG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AAAATTAGCGGGCGGACTGATGCACAGCTTACCCGC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	TTTGAACGCCTTGATTACTGTTGCCACCATTTCAC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	ACTGTCCACCCTCCCGCTTTTTTACGTACTGGTATG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	GAAATCGAACCGATCAGCACCGACCCGCGATTTT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AGGCTGTTTCCTACCCGGGAAACGCCCGGATCAAAAA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AAAGATTGGATGAGCTTGGCCGAAAAAGCTGCGGG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	GCTATAATCCGGCTCAAACTCCGGCACGTCTTGGT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CCATGCTCCGACACCAGCAATAATCTGCGTCGTCC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	TGCGTCGTACCTCCCGACGAGGTTTGTACAACTTTT
GTCGCTCCCTACACGGGAGCGTGGATTGAAAC	TGAACCTCGCGCAAAACCTCGGGCGAAACCGGAACAA
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	GTGAGGGAAATGAACGATTTTACTCCTGATGCGTCTC
ATCGCTCTCTACGCGGGAGCGTGGATTGAAAC	AATCTCGGCTTTTGAAATCCCATAAAAACGTCCA
GTCGCTCCCTACACAGGAGCGTGGATAGAAAC

>NZ_CP013653|4|2|1694468-1694703|PILER-CR
	TACGTCGCTCCCGTAGATATGCCCAACGTCCTCCG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AAAATTAGCGGGCGGACTGATGCACAGCTTACCCGC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	TTTGAACGCCTTGATTACTGTTGCCACCATTTCAC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	ACTGTCCACCCTCCCGCTTTTTTACGTACTGGTATG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	GAAATCGAACCGATCAGCACCGACCCGCGATTTT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AGGCTGTTTCCTACCCGGGAAACGCCCGGATCAAAAA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AAAGATTGGATGAGCTTGGCCGAAAAAGCTGCGGG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	GCTATAATCCGGCTCAAACTCCGGCACGTCTTGGT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CCATGCTCCGACACCAGCAATAATCTGCGTCGTCC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAACTGCGTCGTACCTCCCGACGAGGTTTGTACAACTTTTGTCGCTCCCTACACGGGAGCGTGGATTGAAAC	TGAACCTCGCGCAAAACCTCGGGCGAAACCGGAACAA
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	GTGAGGGAAATGAACGATTTTACTCCTGATGCGTCTC
ATCGCTCTCTACGCGGGAGCGTGGATTGAAAC	AATCTCGGCTTTTGAAATCCCATAAAAACGTCCA
GTCGCTCCCTACACAGGAGCGTGGATAGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013653.1\|WP_062491796.1\|1691580_1692327_+\|ribonuclease-PH	unknown	unknown	gnl\|CDD\|178914
NZ_CP013653.1\|WP_062491789.1\|1686962_1687655_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062491786.1\|1685147_1685888_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP013653.1\|WP_082655127.1\|1696129_1697158_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP013653.1\|WP_062491794.1\|1690346_1691441_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227688
NZ_CP013653.1\|WP_062491817.1\|1706368_1706740_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	COG3337_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NZ_CP013653.1\|WP_160327775.1\|1697181_1697949_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP013653.1\|WP_062491814.1\|1704069_1705410_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|370625
NZ_CP013653.1\|WP_062491812.1\|1702187_1704104_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP013653.1\|WP_062491782.1\|1681723_1682884_+\|UxaA-family-hydrolase	unknown	unknown	gnl\|CDD\|377287
NZ_CP013653.1\|WP_062491792.1\|1689677_1690205_-\|phosphatidylglycerophosphatase-A	unknown	unknown	gnl\|CDD\|224186
NZ_CP013653.1\|WP_062491816.1\|1705399_1706362_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP013653.1\|WP_160327776.1\|1697954_1698728_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237345
NZ_CP013653.1\|WP_062491810.1\|1700925_1702191_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NZ_CP013653.1\|WP_062491788.1\|1685884_1686904_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293811
NZ_CP013653.1\|WP_062491800.1\|1692323_1692962_+\|XTP/dITP-diphosphatase	unknown	unknown	gnl\|CDD\|184835
NZ_CP013653.1\|WP_062491791.1\|1688173_1689583_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP013653.1\|WP_062491784.1\|1682913_1683708_+\|3-oxoacyl-ACP-reductase-FabG	unknown	unknown	gnl\|CDD\|235500
NZ_CP013653.1\|WP_145977163.1\|1699136_1699415_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062491803.1\|1694848_1696126_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223687

Protein	Function_ID	Function_description	E-value
NZ_CP013653.1\|WP_062491796.1\|1691580_1692327_+\|ribonuclease-PH	gnl\|CDD\|178914	PRK00173, rph, ribonuclease PH; Reviewed.	1.2728e-168
NZ_CP013653.1\|WP_062491786.1\|1685147_1685888_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.54284e-28
NZ_CP013653.1\|WP_160327776.1\|1697954_1698728_+\|hypothetical-protein	gnl\|CDD\|237345	PRK13315, PRK13315, heme oxygenase.	9.79892e-25
NZ_CP013653.1\|WP_062491794.1\|1690346_1691441_+\|hypothetical-protein	gnl\|CDD\|227688	COG5401, COG5401, Spore germination protein [General function prediction only].	6.14063e-24
NZ_CP013653.1\|WP_062491817.1\|1706368_1706740_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	2.72369e-22
NZ_CP013653.1\|WP_160327775.1\|1697181_1697949_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.57008e-110
NZ_CP013653.1\|WP_062491814.1\|1704069_1705410_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|370625	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3). CRISPR is a term for Clustered Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family, found in at least ten different archaeal and bacterial species, is represented by TM1793 from Thermotoga maritima.	2.62607e-65
NZ_CP013653.1\|WP_062491812.1\|1702187_1704104_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.16527e-75
NZ_CP013653.1\|WP_062491782.1\|1681723_1682884_+\|UxaA-family-hydrolase	gnl\|CDD\|377287	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus. Family members include the C termini of D-galactarate dehydratase (EC:4.2.1.42) which is thought to catalyze the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, and altronate hydrolase (altronic acid hydratase, EC:4.2.1.7), which catalyzes D-altronate = 2-keto-2-deoxygluconate + H2O. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core.	0
NZ_CP013653.1\|WP_062491792.1\|1689677_1690205_-\|phosphatidylglycerophosphatase-A	gnl\|CDD\|224186	COG1267, PgpA, Phosphatidylglycerophosphatase A and related proteins [Lipid metabolism].	1.45164e-50
NZ_CP013653.1\|WP_062491816.1\|1705399_1706362_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.54422e-87
NZ_CP013653.1\|WP_062491810.1\|1700925_1702191_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.39775e-45
NZ_CP013653.1\|WP_062491788.1\|1685884_1686904_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293811	cd07725, TTHA1429-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1429 and related proteins; MBL-fold metallo hydrolase domain. Includes the MBL-fold metallo hydrolase domain of uncharacterized Thermus thermophilus TTHA1429 and related proteins. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.00802e-51
NZ_CP013653.1\|WP_062491800.1\|1692323_1692962_+\|XTP/dITP-diphosphatase	gnl\|CDD\|184835	PRK14822, PRK14822, XTP/dITP diphosphatase.	6.24127e-95
NZ_CP013653.1\|WP_062491784.1\|1682913_1683708_+\|3-oxoacyl-ACP-reductase-FabG	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	4.19396e-88
NZ_CP013653.1\|WP_062491791.1\|1688173_1689583_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	0
NZ_CP013653.1\|WP_082655127.1\|1696129_1697158_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	6.76092e-90
NZ_CP013653.1\|WP_062491803.1\|1694848_1696126_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223687	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism].	2.80473e-53

>NZ_CP013653.1|WP_062491800.1|1692323_1692962_+|XTP/dITP-diphosphatase
MTGRMREIVIATRNPGKAREFAHAFAALEVAVKSLLDYPSIPDIPEDGSTFADNARIKAKTASELLGVPALADDSGLCVDALDGAPGVYSARYAGEGASDADNNAKLLAELTGRGAETLGTLPDGTRLLSRGRFVCVLALYDPERGAFIEAEGEAAGFIADRPRGSGGFGYDPLFWLPELGRSMAELTQEEKRAISHRGKALEALLNRLQER
>NZ_CP013653.1|WP_062491796.1|1691580_1692327_+|ribonuclease-PH
MRTDGRKPDQLRPVNVTLGVNKYAEGSVLIEVGDTRVVCTASVEERVPPFMKGQGKGWITAEYAMLPRATQTRNQRESAKGKLSGRTMEIQRLIGRALRSVVDLQALGERTITLDCDVLQADGGTRTTSITGSFLALALAVDKLSGTASFPRYPITDYLASVSVGIVGEEPVLDLHYEEDSKAKVDMNVVMTGSGKFVEVQGTGEEAPFSRSELDAMLGLAERGILQLVELQKQTLGELGRRIGEVSP
>NZ_CP013653.1|WP_062491794.1|1690346_1691441_+|hypothetical-protein
MTQYRWIRRTALAGALMLPVFMAGCGWLSQETSKEIDPPPAESGNTQQDGQIDGNAGEQAQGADDGQAAATQGDQTQLTVYLRDGNGYLTPVTLNTALEQEAQAGQRALEMMVEGGRYANLLPEDFTPVLPQGTEVLGYNLVKDQQLAIVDFSKPFTEYNAEDERKIVEAVTWTLTSLPDVKQVEIRYEGEKLNEMPVDGFPLDEPLTRAVGINLEWDDGVDYTRSTPVTLYFSSQTADAEQYFVPVTRLINRTDDTAKAALEQLIAGPLDGSDLIGVMTPDVQVNRLESKDGTVTVDLLELGYDESQKPPAEMLEAVVLSLAENTGADKVQIMLNGKTGITDTKGMSYSEPVSKPEHVNALES
>NZ_CP013653.1|WP_062491792.1|1689677_1690205_-|phosphatidylglycerophosphatase-A
MSEPKAYSLDSRQVAEATEQWLAKRGVTKTEIADLAYFLQKDYFPELTIEECLENVDAVLSKREVQNAVLTGIQLDILAEEGKLMSPLQEMIRNDEGLYGCDEVLALSIVNVYGSIGFTNFGYIDKLKPGILLKLNNKTDGQTHTFLDDIVGAIAASASSRIAHRKQAEREDTID
>NZ_CP013653.1|WP_062491791.1|1688173_1689583_+|group-II-intron-reverse-transcriptase/maturase
MRSHEEQRQQNIPQGSSRQRDTVKPEGYAGAPSSSSAQVAPSSREDRDDLLERMLRRENLLLAYKRVVRNGGAPGVDGVTVAELQAYLKTHWETVKAELLAGTYRPSPVRRVEIPKPGGGVRLLGIPTVMDRLLQQALLQVMEPIFDPHFSWYSYGFRQGKRAHDAVLQAQRYIQSGLRWVVDMDLEKFFDRVNHDILMARVARRVTDKRVLRLIRAYLNAGAMLGGVCQKTEEGTPQGGPLSPLLANILLDNLDKELTKRGLRFVRYADDCNIFVASKRAGERVMESVTRFVEGKLKLKVNRDKSAVDRPWNRKFLGFSFLSNRNATIRLAPKTISRFKEKVRELTNRSKSASMEERIYRLNRYLMGWLGYFRLASAKNHLTSFDQWIRRRLRMCLWKQWKRVRTRIRELRALGVPKWACFVMANSRRGPWEMSRNTNNALPTSYWEAKGLKSLLSRYLELRQPYGTA
>NZ_CP013653.1|WP_062491789.1|1686962_1687655_+|zinc-ribbon-domain-containing-protein
MKYCTQCGVPIADDAGTVCENCGGGQTAAEGAASFQTNRPEAYAALARNYLFHPLQALGDMAAVRSFVPGLVAAGTAALILAVVVLVYLHQTVGALSFIFGGIGGFNGFDVPYFSLFVRVLFGALLQWLLLSGVIVGGAKLFRMPAENVQAFNMAGLTKLYFAAAALASMVLGFIHPWLGLSVLAGGLVLSAHVLYKGMRAVSGDVPFYFVPAMLTAYYILLGALFRLMF
>NZ_CP013653.1|WP_062491788.1|1685884_1686904_+|MBL-fold-metallo-hydrolase
MNGAGGRREPVTAWPDGWLQIKVPLPFSLRWVNAYLLPEPGGGWTLIDPGLHTEEAVALWEAVLKERRIGFGSIERIVLTHQHPDHYGLAGWFQERSGAPVYMSRAARDYTLRLWGPKRSFETDLNALFKAHGMPDVLREGIAGHLESFVAKVSPKPAVDFIEAGGRIAMNGLDWETIAAPGHARGQLLFYQRESKRIICGDQVLPRITPNIGLVPGPDEESNPLRAFLDHLTELAMYDVKLAFPGHRDPFPNFADRIAELIAHHERRLQEIAAMLAEPLTGYEVCIRLFGARIADDMHHLRFAMAETLAHLVELEAAGAAVRTEQGGVARFRATANIY
>NZ_CP013653.1|WP_062491786.1|1685147_1685888_+|class-I-SAM-dependent-methyltransferase
MPEWYEKSFGSDYMVVYRHRDRENAEREVRNMAGWLALPPGAEVLDVGCGMGRHALSLADLGYRVTGLDLSETLLAEARAKDEGSRVEWVRGDMRRLPFADGRFDVTVNLFTSFGYFTDERDNCAVLRELRRVLRPAGQFLIDYLNPVFVERNLVPHSERVDPETGWTIEERRRIEDGFVIKTITIRTEDEERHYEERVRLLGRDWFERALAEAGLELRRIYGGYDGQPYEQATSPRLILIGRAAR
>NZ_CP013653.1|WP_062491784.1|1682913_1683708_+|3-oxoacyl-ACP-reductase-FabG
MQRLKDRIALVTGGSRGIGEAIVIRLAEEGAHVAINYTSASSRELAESVKARVEALGCRAIVVRADVGNKAQVEAMFEQVERELGEVEILVNNAGVAPFEPFLKATEETWDRTINTNLKSIFLCSQRAAKRMVERRYGKIINVLSTASVVVTSPVIPHYQASKAGAHMLTKGMAIELGRFNINVNAVGPSTVDTDMCADFLNDPEQRRREEEANPMKRLGTARQIGDAVVFLASEEAMQVNGHLLMVDGGLSVKAAQPEDHMER
>NZ_CP013653.1|WP_062491782.1|1681723_1682884_+|UxaA-family-hydrolase
MKTFKGYARANGDFGIRNHLLIIPTVICANQVCSRIEQMVPDTVAIPHQHGCSQIGADKDRTFDVLAGTGRNPNVGAVLIVSLGCEVVDPQALADAIRETGKPVEWFDIQSAGGSIKAIQHGVELARRMRAELDRAEKVDVPFSKLRIGVKCGGSDATSGLASNPALGVAADAIIADGGAVVIGETTEIIGAEHLLAERCVTPDVSSKLYSIVERFEREVERAGADMRGGNPSPGNIAGGLSTIEEKSLGCISKCGTAPIRAVIEYAEQIPNGGLYFMDSPGNDIECVSGMAAGGAHLVCFTTGRGTPTGSAVVPVIKITANAQMYRRMEDNMDVDVSGLLTGAFDLREAGRRIEREIREVADGKLTKAEILGHREFSINRIGPSL
>NZ_CP013653.1|WP_062491803.1|1694848_1696126_+|ABC-transporter-substrate-binding-protein
MFRKVLAHGLLALAVLAAPLAIGKEEASAAAASNTAIKVKLDGKSVSLDTQPRIVKNRTLVPYNNIVHALGGKASWNAKSKTVTAERDGVTVKLSVGSSVAYINGEKLDMGVAPLFVNGKTFVPLRLISEAFGKWVSYNKASSTVEITSKLTVQTSTGPFTLNKKPSRIVTLSSSDTEIIYALGGKVVGRPTAMGKVIPEAAASAVEVGSVHGILFEKLATLKPDLVIASPSLQTQKATIERLGAQVMFNSHNTFDDIQKSVRLYGKVLGQESKAEQIIKEMNSKVSKLVKPKNKPKTLIVYGAPGSFVIALPTSYPGNFLELAGGSNVAASFPIMDTMPQYAELSMERVVAANPDLILLITHGDADEVKKSFKQQFESNSAWKNLAAVKNDRFEVLPSDLFAANPGIRAPQAIETINKLLKAAN
>NZ_CP013653.1|WP_082655127.1|1696129_1697158_+|iron-ABC-transporter-permease
MTSLASKSNVQIIKDPRYIRNIGLLVGGIVLLLAAVLVGLMAGAISLPAAEVWTALVRDSDSEARQIVWNLRLPRVLTGMLAGACLATSGAFLQGVFRNPLADPGIIGVSSGGGLAAVVIMILFPAQIAYLPMAAFFGALGAAVVVYILAWKGGASPLRLILAGVAVNSLLGAGMTTLMILNSEKVQAVLPWMSGSLNGRSWPHFDALLPYTIVGGLASIFLIKQANLLVLGDDTAKVLGNRVETGRLLIILLSTFLAGAAISIVGMVGFVGLVVPHIVRLLAGGNYRILLPLSAIGGAALVVMADTAARSWFDPIEFPVGILLALLGAPFFLYLLRKGLGK
>NZ_CP013653.1|WP_160327775.1|1697181_1697949_+|ATP-binding-cassette-domain-containing-protein
MKYGYRTNTVIEGFDLDVKPGEWLGIVGPNGSGKSTVLRMLARLIQPHHGTVAMYGECISGMSTKAIAKKLTMLSQSQEAALDITVRELVRRGRNPHLNWYEECRGEHEKVVDWALQSTKMTELQHRSLLALSGGERQRAWLAMCMAQSPEILLLDEPTTYLDIAHQLELMELIRGLNKEQSLTVVMVLHDLNQAARYCDRIVAIKDGAVVREGRPSEVFQPQFFREVFGIEAKIHDDDGIPFYLPCGIACEREG
>NZ_CP013653.1|WP_160327776.1|1697954_1698728_+|hypothetical-protein
MSAKPLDTELVRAFVGAAHADLPKVQQLLEQEPGLLHASMNWGGGDWETALGAASHVGRRDIAEWLLARGARMDLFAAAMLGELEFVQAVLSKYPHLVHATGPHQISLLQHALMGGEAAKEVASYIRSLLGEEEKEESGMIVVENKIEVRAGYADAVLERFKTPKTVHTFPGFVRMDVLHAINADGNEEVRVCTTWENEEAFEGWASSDAFRRAHARRKEEAASDKEGAEHNPIIGNKMTIYRVAASHFPAAKTSIM
>NZ_CP013653.1|WP_145977163.1|1699136_1699415_+|hypothetical-protein
MLENLEGGPDFDVKGIEFGNVLAARFGAVQPMAKLFQEEQIAFYMKDWMCALEHAFVRTSDCRREYNAVWRFRAIRKWTASKLLLNFDFGVS
>NZ_CP013653.1|WP_062491810.1|1700925_1702191_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MTRSNGVVPPCLDTINKRLSDTSNIASEVFEIQTVTPMIGGSSTPGKVNEKEPVRSASIRGHLRFWWRATRGAAFAEVSDLRRREAEIFGDTETPSRVKIWVSYGEATKATAWVPNYIMINRELKASSDRFKFNLHLQYSGEGEESDSNPLSVKALKQEVHAALWAWVNFGGIGSRTRRGCGSLFSDDFSPSREHTNLKVWYESKLKDFEIKLNTNTATQQWPKLKEVHFGKRGEITEVWKQLINSYKNFRSGPTWRSEANSVRLLTGMGRPRQAPISFKRSQLGMPIVFQVKDPREPYQAQLVPEGKSRLASPLILKPIAINHNEGAELIEGAELIVVLNQPPIEAVRLEVVESKKDKKNRKDRNFDINHLQQVKQRVDRKCPISSEAVYGHKGKERYSAIDDFIQKWMKGNFNRKWREK
>NZ_CP013653.1|WP_062491812.1|1702187_1704104_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MIGGAEKNQLETTRPHTVMIITLGPVQEFIAQARKTRDLWFGSHLLSEISKEAARHLLVNHQANLIFPHIVQDLAPEKLKSLKVANKVVAIVETDSPREVALDVQRAVVRRWHQYADLAKERLLLLDCINESIWDRQVSDLVEFYAVWASIESFGSYAAAREQAENLMAARKTLRDFRPNKKAKLYGDKKSSLDPGRESVLLQEKQALYKRFGVKKGETLDAISMVKRMSRYTTNEPLDFISVCDIAFRQYQHRLSGLSDTPFNRHVRDYYEELKRVFPEISSKRTGEYESPYEYDSRFFYAGRIEEGIAELAQGRRTEREQEQLVRQMSAMLEQLYQKTGVQPTPYFALLVADGDRMGECLKMMDSPEEHRQFSKHLSRFAEKVEEIVQGSPEVPLNRREGQLVYSGGDDVMAFVPVYRCLEVSERIRQAFAETMEDAVSGNGPKPTISIGIAIVHMMEPLGESLRRARQAEIAAKGLRDALAIHFQKRSGSEELKVVLPFRLEPVQAIRQLMEMYAAGEYSTSFAYSLRQLHADYDRRKSQWDLSQEEMGELLHMEVQRLIKKKMQRKVIRQNPADHAPDLSRLSAFFDELKHWKPSNAETVLERLHRIAEQFVLAATLGKAGGSNEQTHSVHPAS
>NZ_CP013653.1|WP_062491814.1|1704069_1705410_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MSRHTLFIQPLEPLMLRDGRPFGATPGAEARSLDQITPGVLAGSLRTMLGKELHRSNVGDLQNSPIYRSDVRGPLYMWGERLFFPMPQDVEVYERKRVDGSREVYVAGRRPCRPPEDRSKLGFLGTGTTGLHEERLWPVMTNASAKPFRPAPAFISKEWMIRWLCEEADEEQWTEAIQDWLNQRREPQSNRSPEKDNDHFREPFVRETRVHTSIDAEKYVAQDQELYSTEYVTLPSDVSIVASIDTPDGCPWPGEVNGIHSFGGRRRLAYFQELHDQQEIWACPERILQVVDRYARTSETTYLRMVLTTPAYFSKGWIPGWLNEELKSADKDKFLKLFGVDLTLELVWACLPRWQPVSGWSYSARRAHRREKAVRRMAPAGSVYFFKVTNGSPEDLVHFVKRNWLAPVSDDDRRKDSFFDRRNGHGLAVWGIWTPAKAQWGENDAR
>NZ_CP013653.1|WP_062491816.1|1705399_1706362_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MLDNSRLYMIHCMSPVHVGAGQGVGVIDQPIMREKATEWPFIPGSSIKGVHREYFRQKRSNMRSDIAGASGNGEEDEWVAAAFGKSSDTADMGNAGALVMSDARILAFPVASMNGTFAYVTCPLVLKRLQRDLDVMNLKMPALDWDALKKKLDSVRQDNGAEGYVIISRGSKLTGQNDTVFLDEFESDALKDESFTQWSEWLADQVAPDDISGKLIKERTALVSDDAFQYFVTMCSEITARIRMDPERKTVENRALWYEEYLPAESILYGLIWCDFKPAGGWTERDLLNAFPAEGAYLQLGGNASVGKGRVRCVYVGRES
>NZ_CP013653.1|WP_062491817.1|1706368_1706740_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MRSIADTYAKQALQSVRNVQQMKFAKEYGRLCHQFPIMVLTNGLRLTVAFFISKQKDEESPYTEYLKHIGLATGLDENWYKGDILNGSMTEYRDLTRRMLAASVWFKRYAEAILKVDPADMGD

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Crispr_ID: NZ_CP013653_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013653_5

1699661-1700583

TypeIII

I-C

Consensus_repeat	Method
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	PILER-CR
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CRT

13 spacers

RT,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,PD-DExK

The CRISPR arrays of NZ_CP013653_5

>merge|NZ_CP013653|5|1699661-1700583|PILER-CR,CRISPRCasFinder,CRT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAACACAAACACTACATTAACATCCGATTTCTTAGTTATGGTCGCTCCCTACGCGGGAGCGTGGATTGAAACGCCTTTGTCGTGGACAAACGTGCGCTCGATGATCTGGTCGCTCCCTACGCGGGAGCGTGGATTGAAACCGCTATAAGTCTTTGTTGTCCGCGCGTGATTTTATTAAGTCGCTCCCTACGCGGGAGCGTGGATTGAAACAAAATACGCATTGTGGGATTACCTCCTATAGAATTAAGTCGCTCCCTACGCGGGAGCGTGGATTGAAACCACATCTGAGAACTATGGTCGGCCGAGCGCTTATTCGTCGCTCCCTACGCGGGAGCGTGGATTGAAACAAAAGAAGGTGCCGTCACACATGACGCTTGACATCTCGTCGCTCCCTACGCGGGAGCGTGGATTGAAACGAGCAGTGTGCGAATCGTGTTTTGCAATGCGACGATTGTCGCTCCCTACGCGGGAGCGTGGATTGAAACCTCGACAAATTCTTCAAACTCCATTCCTACTCGAAAGTCGATCCCTACGCGGGAGCGTGGATTGAAACTCAACCTCAAGTTCAATAAATCGCGTATGTCTAGGCGTCGCTCCCTACGCGGGAGCGTGGATTGAAACTGGCCGCGGTCTCGGTCCGTATACTTGTTGATCCGCCGTCGCTCCCTACGCGGGAGCGTGGATTGAAACCCGGATGGATTGCCTAGCTATCTAGGCTTATCCGTGTCGCTCCCTACGCGGGAGCGTGAATTGAAACGGTTGACACCCTGACATATATCTCTATCAAATTGCTCGTCGCTCCCTACGCGGGAGCGTGGATTGAAACTTGTCTTCGGCAAATTTACCTTTTGCATGGATTGCAAGTCGCTCCCTACGCGGGAGCGTGGCTTCAAAC

>NZ_CP013653|5|3|1699661-1700514|PILER-CR
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	ACAAACACTACATTAACATCCGATTTCTTAGTTATG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	GCCTTTGTCGTGGACAAACGTGCGCTCGATGATCTG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CGCTATAAGTCTTTGTTGTCCGCGCGTGATTTTATTAA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AAAATACGCATTGTGGGATTACCTCCTATAGAATTAA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CACATCTGAGAACTATGGTCGGCCGAGCGCTTATTC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AAAAGAAGGTGCCGTCACACATGACGCTTGACATCTC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	GAGCAGTGTGCGAATCGTGTTTTGCAATGCGACGATT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CTCGACAAATTCTTCAAACTCCATTCCTACTCGAAA
GTCGATCCCTACGCGGGAGCGTGGATTGAAAC	TCAACCTCAAGTTCAATAAATCGCGTATGTCTAGGC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	TGGCCGCGGTCTCGGTCCGTATACTTGTTGATCCGCC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CCGGATGGATTGCCTAGCTATCTAGGCTTATCCGT
GTCGCTCCCTACGCGGGAGCGTGAATTGAAAC	GGTTGACACCCTGACATATATCTCTATCAAATTGCTC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC

>NZ_CP013653|5|3|1699661-1700583|CRISPRCasFinder
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	ACAAACACTACATTAACATCCGATTTCTTAGTTATG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	GCCTTTGTCGTGGACAAACGTGCGCTCGATGATCTG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CGCTATAAGTCTTTGTTGTCCGCGCGTGATTTTATTAA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AAAATACGCATTGTGGGATTACCTCCTATAGAATTAA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CACATCTGAGAACTATGGTCGGCCGAGCGCTTATTC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AAAAGAAGGTGCCGTCACACATGACGCTTGACATCTC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	GAGCAGTGTGCGAATCGTGTTTTGCAATGCGACGATT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CTCGACAAATTCTTCAAACTCCATTCCTACTCGAAA
GTCGATCCCTACGCGGGAGCGTGGATTGAAAC	TCAACCTCAAGTTCAATAAATCGCGTATGTCTAGGC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	TGGCCGCGGTCTCGGTCCGTATACTTGTTGATCCGCC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CCGGATGGATTGCCTAGCTATCTAGGCTTATCCGT
GTCGCTCCCTACGCGGGAGCGTGAATTGAAAC	GGTTGACACCCTGACATATATCTCTATCAAATTGCTC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	TTGTCTTCGGCAAATTTACCTTTTGCATGGATTGCAA
GTCGCTCCCTACGCGGGAGCGTGGCTTCAAAC

>NZ_CP013653|5|4|1699661-1700583|CRT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	ACAAACACTACATTAACATCCGATTTCTTAGTTATG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	GCCTTTGTCGTGGACAAACGTGCGCTCGATGATCTG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CGCTATAAGTCTTTGTTGTCCGCGCGTGATTTTATTAA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AAAATACGCATTGTGGGATTACCTCCTATAGAATTAA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CACATCTGAGAACTATGGTCGGCCGAGCGCTTATTC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AAAAGAAGGTGCCGTCACACATGACGCTTGACATCTC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	GAGCAGTGTGCGAATCGTGTTTTGCAATGCGACGATT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CTCGACAAATTCTTCAAACTCCATTCCTACTCGAAA
GTCGATCCCTACGCGGGAGCGTGGATTGAAAC	TCAACCTCAAGTTCAATAAATCGCGTATGTCTAGGC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	TGGCCGCGGTCTCGGTCCGTATACTTGTTGATCCGCC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CCGGATGGATTGCCTAGCTATCTAGGCTTATCCGT
GTCGCTCCCTACGCGGGAGCGTGAATTGAAAC	GGTTGACACCCTGACATATATCTCTATCAAATTGCTC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	TTGTCTTCGGCAAATTTACCTTTTGCATGGATTGCAA
GTCGCTCCCTACGCGGGAGCGTGGCTTCAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013653.1\|WP_062491796.1\|1691580_1692327_+\|ribonuclease-PH	unknown	unknown	gnl\|CDD\|178914
NZ_CP013653.1\|WP_062491812.1\|1702187_1704104_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP013653.1\|WP_160327776.1\|1697954_1698728_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237345
NZ_CP013653.1\|WP_062491800.1\|1692323_1692962_+\|XTP/dITP-diphosphatase	unknown	unknown	gnl\|CDD\|184835
NZ_CP013653.1\|WP_062491817.1\|1706368_1706740_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	COG3337_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NZ_CP013653.1\|WP_160327775.1\|1697181_1697949_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP013653.1\|WP_062491819.1\|1706743_1707610_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|224520
NZ_CP013653.1\|WP_062491814.1\|1704069_1705410_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|370625
NZ_CP013653.1\|WP_062491823.1\|1710015_1711572_+\|TIGR02677-family-protein	unknown	unknown	gnl\|CDD\|378233
NZ_CP013653.1\|WP_062491792.1\|1689677_1690205_-\|phosphatidylglycerophosphatase-A	unknown	unknown	gnl\|CDD\|224186
NZ_CP013653.1\|WP_062491816.1\|1705399_1706362_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP013653.1\|WP_062491810.1\|1700925_1702191_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NZ_CP013653.1\|WP_062491794.1\|1690346_1691441_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227688
NZ_CP013653.1\|WP_062491791.1\|1688173_1689583_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP013653.1\|WP_062496622.1\|1712871_1717047_+\|TIGR02680-family-protein	unknown	unknown	gnl\|CDD\|274256
NZ_CP013653.1\|WP_082655127.1\|1696129_1697158_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP013653.1\|WP_145977163.1\|1699136_1699415_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_082655128.1\|1711573_1712782_+\|TIGR02678-family-protein	unknown	unknown	gnl\|CDD\|378234
NZ_CP013653.1\|WP_062491821.1\|1707575_1708589_+\|hypothetical-protein	PD-DExK	mkCas0090_PD-DExK_CAS-I:CAS-III	unknown
NZ_CP013653.1\|WP_062491803.1\|1694848_1696126_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223687

Protein	Function_ID	Function_description	E-value
NZ_CP013653.1\|WP_062491796.1\|1691580_1692327_+\|ribonuclease-PH	gnl\|CDD\|178914	PRK00173, rph, ribonuclease PH; Reviewed.	1.2728e-168
NZ_CP013653.1\|WP_062491812.1\|1702187_1704104_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.16527e-75
NZ_CP013653.1\|WP_160327776.1\|1697954_1698728_+\|hypothetical-protein	gnl\|CDD\|237345	PRK13315, PRK13315, heme oxygenase.	9.79892e-25
NZ_CP013653.1\|WP_062491800.1\|1692323_1692962_+\|XTP/dITP-diphosphatase	gnl\|CDD\|184835	PRK14822, PRK14822, XTP/dITP diphosphatase.	6.24127e-95
NZ_CP013653.1\|WP_062491817.1\|1706368_1706740_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	2.72369e-22
NZ_CP013653.1\|WP_160327775.1\|1697181_1697949_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.57008e-110
NZ_CP013653.1\|WP_062491819.1\|1706743_1707610_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|224520	COG1604, COG1604, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.19922e-54
NZ_CP013653.1\|WP_062491814.1\|1704069_1705410_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|370625	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3). CRISPR is a term for Clustered Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family, found in at least ten different archaeal and bacterial species, is represented by TM1793 from Thermotoga maritima.	2.62607e-65
NZ_CP013653.1\|WP_062491823.1\|1710015_1711572_+\|TIGR02677-family-protein	gnl\|CDD\|378233	pfam09660, DUF2397, Protein of unknown function (DUF2397). Proteins in this entry are encoded within a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).	1.10043e-156
NZ_CP013653.1\|WP_062491792.1\|1689677_1690205_-\|phosphatidylglycerophosphatase-A	gnl\|CDD\|224186	COG1267, PgpA, Phosphatidylglycerophosphatase A and related proteins [Lipid metabolism].	1.45164e-50
NZ_CP013653.1\|WP_062491816.1\|1705399_1706362_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.54422e-87
NZ_CP013653.1\|WP_062491810.1\|1700925_1702191_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.39775e-45
NZ_CP013653.1\|WP_062491794.1\|1690346_1691441_+\|hypothetical-protein	gnl\|CDD\|227688	COG5401, COG5401, Spore germination protein [General function prediction only].	6.14063e-24
NZ_CP013653.1\|WP_062491791.1\|1688173_1689583_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	0
NZ_CP013653.1\|WP_062496622.1\|1712871_1717047_+\|TIGR02680-family-protein	gnl\|CDD\|274256	TIGR02680, conserved_hypothetical_protein, TIGR02680 family protein. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. [Hypothetical proteins, Conserved].	0
NZ_CP013653.1\|WP_082655127.1\|1696129_1697158_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	6.76092e-90
NZ_CP013653.1\|WP_082655128.1\|1711573_1712782_+\|TIGR02678-family-protein	gnl\|CDD\|378234	pfam09661, DUF2398, Protein of unknown function (DUF2398). Proteins in this entry are encoded within a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).	5.46912e-114
NZ_CP013653.1\|WP_062491803.1\|1694848_1696126_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223687	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism].	2.80473e-53

>NZ_CP013653.1|WP_145977163.1|1699136_1699415_+|hypothetical-protein
MLENLEGGPDFDVKGIEFGNVLAARFGAVQPMAKLFQEEQIAFYMKDWMCALEHAFVRTSDCRREYNAVWRFRAIRKWTASKLLLNFDFGVS
>NZ_CP013653.1|WP_160327776.1|1697954_1698728_+|hypothetical-protein
MSAKPLDTELVRAFVGAAHADLPKVQQLLEQEPGLLHASMNWGGGDWETALGAASHVGRRDIAEWLLARGARMDLFAAAMLGELEFVQAVLSKYPHLVHATGPHQISLLQHALMGGEAAKEVASYIRSLLGEEEKEESGMIVVENKIEVRAGYADAVLERFKTPKTVHTFPGFVRMDVLHAINADGNEEVRVCTTWENEEAFEGWASSDAFRRAHARRKEEAASDKEGAEHNPIIGNKMTIYRVAASHFPAAKTSIM
>NZ_CP013653.1|WP_160327775.1|1697181_1697949_+|ATP-binding-cassette-domain-containing-protein
MKYGYRTNTVIEGFDLDVKPGEWLGIVGPNGSGKSTVLRMLARLIQPHHGTVAMYGECISGMSTKAIAKKLTMLSQSQEAALDITVRELVRRGRNPHLNWYEECRGEHEKVVDWALQSTKMTELQHRSLLALSGGERQRAWLAMCMAQSPEILLLDEPTTYLDIAHQLELMELIRGLNKEQSLTVVMVLHDLNQAARYCDRIVAIKDGAVVREGRPSEVFQPQFFREVFGIEAKIHDDDGIPFYLPCGIACEREG
>NZ_CP013653.1|WP_082655127.1|1696129_1697158_+|iron-ABC-transporter-permease
MTSLASKSNVQIIKDPRYIRNIGLLVGGIVLLLAAVLVGLMAGAISLPAAEVWTALVRDSDSEARQIVWNLRLPRVLTGMLAGACLATSGAFLQGVFRNPLADPGIIGVSSGGGLAAVVIMILFPAQIAYLPMAAFFGALGAAVVVYILAWKGGASPLRLILAGVAVNSLLGAGMTTLMILNSEKVQAVLPWMSGSLNGRSWPHFDALLPYTIVGGLASIFLIKQANLLVLGDDTAKVLGNRVETGRLLIILLSTFLAGAAISIVGMVGFVGLVVPHIVRLLAGGNYRILLPLSAIGGAALVVMADTAARSWFDPIEFPVGILLALLGAPFFLYLLRKGLGK
>NZ_CP013653.1|WP_062491803.1|1694848_1696126_+|ABC-transporter-substrate-binding-protein
MFRKVLAHGLLALAVLAAPLAIGKEEASAAAASNTAIKVKLDGKSVSLDTQPRIVKNRTLVPYNNIVHALGGKASWNAKSKTVTAERDGVTVKLSVGSSVAYINGEKLDMGVAPLFVNGKTFVPLRLISEAFGKWVSYNKASSTVEITSKLTVQTSTGPFTLNKKPSRIVTLSSSDTEIIYALGGKVVGRPTAMGKVIPEAAASAVEVGSVHGILFEKLATLKPDLVIASPSLQTQKATIERLGAQVMFNSHNTFDDIQKSVRLYGKVLGQESKAEQIIKEMNSKVSKLVKPKNKPKTLIVYGAPGSFVIALPTSYPGNFLELAGGSNVAASFPIMDTMPQYAELSMERVVAANPDLILLITHGDADEVKKSFKQQFESNSAWKNLAAVKNDRFEVLPSDLFAANPGIRAPQAIETINKLLKAAN
>NZ_CP013653.1|WP_062491800.1|1692323_1692962_+|XTP/dITP-diphosphatase
MTGRMREIVIATRNPGKAREFAHAFAALEVAVKSLLDYPSIPDIPEDGSTFADNARIKAKTASELLGVPALADDSGLCVDALDGAPGVYSARYAGEGASDADNNAKLLAELTGRGAETLGTLPDGTRLLSRGRFVCVLALYDPERGAFIEAEGEAAGFIADRPRGSGGFGYDPLFWLPELGRSMAELTQEEKRAISHRGKALEALLNRLQER
>NZ_CP013653.1|WP_062491796.1|1691580_1692327_+|ribonuclease-PH
MRTDGRKPDQLRPVNVTLGVNKYAEGSVLIEVGDTRVVCTASVEERVPPFMKGQGKGWITAEYAMLPRATQTRNQRESAKGKLSGRTMEIQRLIGRALRSVVDLQALGERTITLDCDVLQADGGTRTTSITGSFLALALAVDKLSGTASFPRYPITDYLASVSVGIVGEEPVLDLHYEEDSKAKVDMNVVMTGSGKFVEVQGTGEEAPFSRSELDAMLGLAERGILQLVELQKQTLGELGRRIGEVSP
>NZ_CP013653.1|WP_062491794.1|1690346_1691441_+|hypothetical-protein
MTQYRWIRRTALAGALMLPVFMAGCGWLSQETSKEIDPPPAESGNTQQDGQIDGNAGEQAQGADDGQAAATQGDQTQLTVYLRDGNGYLTPVTLNTALEQEAQAGQRALEMMVEGGRYANLLPEDFTPVLPQGTEVLGYNLVKDQQLAIVDFSKPFTEYNAEDERKIVEAVTWTLTSLPDVKQVEIRYEGEKLNEMPVDGFPLDEPLTRAVGINLEWDDGVDYTRSTPVTLYFSSQTADAEQYFVPVTRLINRTDDTAKAALEQLIAGPLDGSDLIGVMTPDVQVNRLESKDGTVTVDLLELGYDESQKPPAEMLEAVVLSLAENTGADKVQIMLNGKTGITDTKGMSYSEPVSKPEHVNALES
>NZ_CP013653.1|WP_062491792.1|1689677_1690205_-|phosphatidylglycerophosphatase-A
MSEPKAYSLDSRQVAEATEQWLAKRGVTKTEIADLAYFLQKDYFPELTIEECLENVDAVLSKREVQNAVLTGIQLDILAEEGKLMSPLQEMIRNDEGLYGCDEVLALSIVNVYGSIGFTNFGYIDKLKPGILLKLNNKTDGQTHTFLDDIVGAIAASASSRIAHRKQAEREDTID
>NZ_CP013653.1|WP_062491791.1|1688173_1689583_+|group-II-intron-reverse-transcriptase/maturase
MRSHEEQRQQNIPQGSSRQRDTVKPEGYAGAPSSSSAQVAPSSREDRDDLLERMLRRENLLLAYKRVVRNGGAPGVDGVTVAELQAYLKTHWETVKAELLAGTYRPSPVRRVEIPKPGGGVRLLGIPTVMDRLLQQALLQVMEPIFDPHFSWYSYGFRQGKRAHDAVLQAQRYIQSGLRWVVDMDLEKFFDRVNHDILMARVARRVTDKRVLRLIRAYLNAGAMLGGVCQKTEEGTPQGGPLSPLLANILLDNLDKELTKRGLRFVRYADDCNIFVASKRAGERVMESVTRFVEGKLKLKVNRDKSAVDRPWNRKFLGFSFLSNRNATIRLAPKTISRFKEKVRELTNRSKSASMEERIYRLNRYLMGWLGYFRLASAKNHLTSFDQWIRRRLRMCLWKQWKRVRTRIRELRALGVPKWACFVMANSRRGPWEMSRNTNNALPTSYWEAKGLKSLLSRYLELRQPYGTA
>NZ_CP013653.1|WP_062491810.1|1700925_1702191_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MTRSNGVVPPCLDTINKRLSDTSNIASEVFEIQTVTPMIGGSSTPGKVNEKEPVRSASIRGHLRFWWRATRGAAFAEVSDLRRREAEIFGDTETPSRVKIWVSYGEATKATAWVPNYIMINRELKASSDRFKFNLHLQYSGEGEESDSNPLSVKALKQEVHAALWAWVNFGGIGSRTRRGCGSLFSDDFSPSREHTNLKVWYESKLKDFEIKLNTNTATQQWPKLKEVHFGKRGEITEVWKQLINSYKNFRSGPTWRSEANSVRLLTGMGRPRQAPISFKRSQLGMPIVFQVKDPREPYQAQLVPEGKSRLASPLILKPIAINHNEGAELIEGAELIVVLNQPPIEAVRLEVVESKKDKKNRKDRNFDINHLQQVKQRVDRKCPISSEAVYGHKGKERYSAIDDFIQKWMKGNFNRKWREK
>NZ_CP013653.1|WP_062491812.1|1702187_1704104_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MIGGAEKNQLETTRPHTVMIITLGPVQEFIAQARKTRDLWFGSHLLSEISKEAARHLLVNHQANLIFPHIVQDLAPEKLKSLKVANKVVAIVETDSPREVALDVQRAVVRRWHQYADLAKERLLLLDCINESIWDRQVSDLVEFYAVWASIESFGSYAAAREQAENLMAARKTLRDFRPNKKAKLYGDKKSSLDPGRESVLLQEKQALYKRFGVKKGETLDAISMVKRMSRYTTNEPLDFISVCDIAFRQYQHRLSGLSDTPFNRHVRDYYEELKRVFPEISSKRTGEYESPYEYDSRFFYAGRIEEGIAELAQGRRTEREQEQLVRQMSAMLEQLYQKTGVQPTPYFALLVADGDRMGECLKMMDSPEEHRQFSKHLSRFAEKVEEIVQGSPEVPLNRREGQLVYSGGDDVMAFVPVYRCLEVSERIRQAFAETMEDAVSGNGPKPTISIGIAIVHMMEPLGESLRRARQAEIAAKGLRDALAIHFQKRSGSEELKVVLPFRLEPVQAIRQLMEMYAAGEYSTSFAYSLRQLHADYDRRKSQWDLSQEEMGELLHMEVQRLIKKKMQRKVIRQNPADHAPDLSRLSAFFDELKHWKPSNAETVLERLHRIAEQFVLAATLGKAGGSNEQTHSVHPAS
>NZ_CP013653.1|WP_062491814.1|1704069_1705410_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MSRHTLFIQPLEPLMLRDGRPFGATPGAEARSLDQITPGVLAGSLRTMLGKELHRSNVGDLQNSPIYRSDVRGPLYMWGERLFFPMPQDVEVYERKRVDGSREVYVAGRRPCRPPEDRSKLGFLGTGTTGLHEERLWPVMTNASAKPFRPAPAFISKEWMIRWLCEEADEEQWTEAIQDWLNQRREPQSNRSPEKDNDHFREPFVRETRVHTSIDAEKYVAQDQELYSTEYVTLPSDVSIVASIDTPDGCPWPGEVNGIHSFGGRRRLAYFQELHDQQEIWACPERILQVVDRYARTSETTYLRMVLTTPAYFSKGWIPGWLNEELKSADKDKFLKLFGVDLTLELVWACLPRWQPVSGWSYSARRAHRREKAVRRMAPAGSVYFFKVTNGSPEDLVHFVKRNWLAPVSDDDRRKDSFFDRRNGHGLAVWGIWTPAKAQWGENDAR
>NZ_CP013653.1|WP_062491816.1|1705399_1706362_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MLDNSRLYMIHCMSPVHVGAGQGVGVIDQPIMREKATEWPFIPGSSIKGVHREYFRQKRSNMRSDIAGASGNGEEDEWVAAAFGKSSDTADMGNAGALVMSDARILAFPVASMNGTFAYVTCPLVLKRLQRDLDVMNLKMPALDWDALKKKLDSVRQDNGAEGYVIISRGSKLTGQNDTVFLDEFESDALKDESFTQWSEWLADQVAPDDISGKLIKERTALVSDDAFQYFVTMCSEITARIRMDPERKTVENRALWYEEYLPAESILYGLIWCDFKPAGGWTERDLLNAFPAEGAYLQLGGNASVGKGRVRCVYVGRES
>NZ_CP013653.1|WP_062491817.1|1706368_1706740_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MRSIADTYAKQALQSVRNVQQMKFAKEYGRLCHQFPIMVLTNGLRLTVAFFISKQKDEESPYTEYLKHIGLATGLDENWYKGDILNGSMTEYRDLTRRMLAASVWFKRYAEAILKVDPADMGD
>NZ_CP013653.1|WP_062491819.1|1706743_1707610_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MNVHLALTKLRQSFDTEFNLEKAVSKTDESNEAKASYYRNVIQMHVKNWDTNKDWYTQKFRQYEEMIKTEFSGFAVSFEMRTSCSSLLLIGQGGISVLETPLTLHKTYGLPYIPGTALKGLTSRYYHRRLGSQKSEFPEWDAYYNILFGIKEKAGVISFHDAWITPETARQAFVLDVMTPHHQSYNGIRIGELDRHQGQSRLDAPRDDDAPVPIPFLAVSGTFRFYLTCSPDTDNGPEWLRIARKILMHALEHEGIGGKTNAGYGRLEAEKGEGDVQDGEKPEHRSDN
>NZ_CP013653.1|WP_062491821.1|1707575_1708589_+|hypothetical-protein
MGKSRNIVQTTNEDLIDEGILSQIKLNYIRLEESIISQLGMANKKHHVTTGTFREDIWRSLFEQIIPRKFSIEQSVFIMDSQKRVSKEVDLAIFDEMYTPYIFRYGRIKYIPIEAVAVVIQCKSENVTNKKEKKTLSDWYESIKILQTSLKSVTRFATNLGLGEFEYKKDKNDKPCLPPGGRRLTQTATRPIRILCHTNQKSDEDLLESFDIIIHPKRDKKGLNVLLNKESKDQENNLAYWYESLNHANEYYSNLKQDFWDGKKTEDLSKTFNIDNYRVYDSADEKSRTEISVLSLTFLLNQLLMLLNNPIPFPHLAYAKMFNEISSSISRRGSRPS
>NZ_CP013653.1|WP_062491823.1|1710015_1711572_+|TIGR02677-family-protein
MEHQGPGLPAQALRGIPELKYVNADNVARYRAIMRFFYQEYKRLKYWLKPEEVYETMKAWNIWPDYTPEMCHHDLEQLVEWQNLTARHDGGRSSTLEEYLKKKMQYSLRPYSIEIERLLENLEKVTGYGGSLESSLFDTIAEKLFAIRRDADRWQPEEALELWNVLYRSFVSLHENAADYIASLQTAKAEEMMVTEAFLVFKEKLTDYLQNFVQALQRSAYKIEGNLLRINDSVRDLFLEKVAEGELAKPRLEEGPDKEEWMKELQRSWANIRRWFIGEGNTPSELTLLERATKDTIARIVRSAIRIQERKRAGLSRKKELEHLARWFASLDSVDDAHRLAAFAFGLFPTRHLQGEDLRDSDRADMSSWEERPMVRMLRSRSRKRGERLQSDPVRDNEERKRREREAYRIRQAEEMRMIEAMLERGRVRISEMGVVTAKERLRLLQWIGRCMTAGKTYTFVTPEGVRIRMSNPRTDKRTILYAEDGELEMADYELHFMLTNTAAALEAAASAEERGDQ
>NZ_CP013653.1|WP_082655128.1|1711573_1712782_+|TIGR02678-family-protein
MASGALRRAVRKERNAEQLAERKRACMHALLNRPWVTKEDDPDLYFAIKDHYEELRDWFMDKAGFPLIVTRSMAKLDKTPVKAFPWMGFAEFRETSDYVFFTYGLWYLEGKTELDQFLLSDIVEEVREQMLGAGLEADWRNYYHRLSMARALKKLRSLGVLYNVDGDESFWAQDAERNALYECSPLTRYVLRRFPRDLTECSTLEELTDPIPYADTQDGQSMRRRHRVYRRLLLEPVVTDRQWDEEDLNYVLWQRRAIIDQLGKTFGWVGRRYREGLLFFHPELTGEGELFPTLSAASDLALLAAGEIRKQLAEGGGLYTEDNGTIRLTRAEMETIMYRLQSRHKEYWSKELRESASQELAELCMNHLAEWGLGEWESEASFLVSPVLGRWNADYANSDFDA
>NZ_CP013653.1|WP_062496622.1|1712871_1717047_+|TIGR02680-family-protein
MRRADGAQPPDRWQMNRVGILNFWYYDEEEFQLEDGRLILRGANGSGKSVTMQSFLPLVLDGDKRPHRLDPFGSRDRRIEYYLLGEDDDGKGKTDATGYLWMEFRHGRTGAFKTIGIGLRARRNASQVQFWGFVLEDGRRIGRDFWLYDRNRWLEDQVRIPLDRKELEGKIGSGGMVVQDQKSYQDLVNKQIFGFADIEAFQDLLQLMIQLRSPKLSKDFKPSAIYEILHQALPPLMEEELRPLSEVLEDMDQMADRLDEIRRHRGEMVRLQERYDFYNKHILYTKAGELLENHASYKEVAARVKASETALEQAEREKEAAAAERADIQRRLQDIALERELLEKHEAIGKQREYEAAAKALEDTERQLERSRDKAQKARIRQDRLQREQEEAASSRDASERIQRETLDEMEQMAGEMEFAEHAVYHRYWTPNVPEDDAWKDAWRRDIRRHRERVELALVKAAEEREAASMVKEREIELGEASRVRDEAERERAEREKRLEEAKERLKDAIVVWRDGLKELEFGDEAIRETFGAIRNYGPEQPSLELVRAPLLQRYAVGRDALVERRLGFERRRDELLEQKRRLEEEKRSWEESREPEPPRSEARENFRRGKARVGAPLYALCDFRKQVGEEERARIEEALERAGLLDAWISPDGWLEDCGSGDEEAWIVPKPIEFGYTLADLLVADPPEESGVTAEMVDAVLRSFLWDEGSALQDGADWHGIIAADGSYRLGPLAGRSRVKVRAEYIGRETRKRTRMFEIARLAEAIAAVEAELHEVQLSIDGQREAESRLAEERDRFPDGTELTDGLRALQEAGYRLEAALRHEERALERFKAKSEEWRELQRQLHEMTAGWSRLKREKELAEAASVIREYEGALSELHSLWRQYRDASAAWERLRDELETTALELEDEEAQMDELDERRRDQRAQTETLRKLIEELGLADVARRLEEIRAEQTALVQRNREQERLLDAAKDKAARAEAQLALLSEQAEGRKLGLDRATVQLWTELRRGLVPEWREELREEWPGDERNDAEPFAVQPPEGDAACQLAREIRRRYEPLFAGRNAENITNRLLEQFTAARMMLTEYVLQTTDDETTGRILVHSMRDPHRPLPPQTLLDELAEQEAEQSALLSEKDRELYEEIILRSVGKAIRQRIHRAEQWVREMNKLMEERDTSSGLRLRLEWEPKPASGEQQLDVYDLVEMLKRDSHRLREDEIDAMIEHFRAQIAGAKQSAEEEQESLRQHLYRALDYRNWFYFELKYKKGEQTGYRPLTDARFNVLSGGEKAMAMYIPLFAATWSRYSDARSDAPRLISLDEAFAGVDEENMRDMFKLLTDMGFDYMMTSQVLWGCFDTVPKLAIYEIYRPKDVDFVTLFRYRWNGKRREYVENVRTE

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Crispr_ID: NZ_CP013653_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013653_6

1708900-1709872

TypeI

I-C

Consensus_repeat	Method
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	PILER-CR
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CRT

14 spacers

PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas3,cas5,cas8c,cas7

The CRISPR arrays of NZ_CP013653_6

>merge|NZ_CP013653|6|1708900-1709872|PILER-CR,CRISPRCasFinder,CRT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAACCCATATCCATTTGAGAGCAAACAGCACGATCAATGTCGCTCCCTACGCGGGAGCGTGGATTGAAACATATGCTCGGCATCCCTGCCCCGTCATCATTACGGTCGCTCCCTACGCGGGAGCGTGGATTGAAACATGTCCAACAGCGATTTTCATGCGAAGATCAGAGTCGCTCCCTACGCGGGAGCGTGGATTGAAACTTCCGTTGTTGCCGTTTCTGCCGCCGGTACCTCCGGGTCGCTCCCTACGCGGGAGCGTGGATTGAAACATTAAAAAATTCATTGAAACGTGGCTCGCCGATTATAGTCGCTCCCTACGCGGGAGCGTGGATTGAAACATTCTGTCGGGATTTTAAGGCGGATAGCTCGTCTAAGTCGCTCCCTACGCGGGAGCGTGGATTGAAACCGTACACGGGATCCACAAAAACCTCACTGGCTGAGTCGCTCCCTACGCGGGAGCGTGGATTGAAACCTCGGACAGTGTGTTTGTGAATGCCGGGTCAACGTCGCTCCCTACGCGGGAGCGTGGATTGAAACAGTATGAACAGTTCATCGACAATACGATCAAACCGATGTCGCTCCCTACGCGGGAGCGTGGATTGAAACGATCGATCCAATCTACCAATTCCTTTAATGGTAATGTCGCTCCCCACGCGGGAGCGTGGATTGAAACCACGGTTCGTCTATGCCTTCGGATTGCCACCGCTTCGTCGCTCCCTACGCGGGAGCGTGGATTGAAACCATGCTGCTAGACTCGTATGCCGTTTCAATCCGGGGTCGCTCCCTACGCGGGAGCGTGGATTGAAACAGCAATCCGATGCCGGTCGCGTAGCAGCGATTTAACGCGTCGCTCCCCACGCGGGAGCGTGGATTGAAACCGGTTCGGGACCGTGGATGAACCCACCTATACCTTGTCGCTCCCCCCGCGGGAGCGTGGATAATATC

>NZ_CP013653|6|4|1708900-1709805|PILER-CR
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CCATATCCATTTGAGAGCAAACAGCACGATCAAT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	ATATGCTCGGCATCCCTGCCCCGTCATCATTACG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	ATGTCCAACAGCGATTTTCATGCGAAGATCAGA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	TTCCGTTGTTGCCGTTTCTGCCGCCGGTACCTCCGG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	ATTAAAAAATTCATTGAAACGTGGCTCGCCGATTATA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	ATTCTGTCGGGATTTTAAGGCGGATAGCTCGTCTAA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CGTACACGGGATCCACAAAAACCTCACTGGCTGA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CTCGGACAGTGTGTTTGTGAATGCCGGGTCAAC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AGTATGAACAGTTCATCGACAATACGATCAAACCGAT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	GATCGATCCAATCTACCAATTCCTTTAATGGTAAT
GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC	CACGGTTCGTCTATGCCTTCGGATTGCCACCGCTTC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CATGCTGCTAGACTCGTATGCCGTTTCAATCCGGG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AGCAATCCGATGCCGGTCGCGTAGCAGCGATTTAACGC
GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC

>NZ_CP013653|6|4|1708900-1709872|CRISPRCasFinder
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CCATATCCATTTGAGAGCAAACAGCACGATCAAT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	ATATGCTCGGCATCCCTGCCCCGTCATCATTACG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	ATGTCCAACAGCGATTTTCATGCGAAGATCAGA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	TTCCGTTGTTGCCGTTTCTGCCGCCGGTACCTCCGG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	ATTAAAAAATTCATTGAAACGTGGCTCGCCGATTATA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	ATTCTGTCGGGATTTTAAGGCGGATAGCTCGTCTAA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CGTACACGGGATCCACAAAAACCTCACTGGCTGA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CTCGGACAGTGTGTTTGTGAATGCCGGGTCAAC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AGTATGAACAGTTCATCGACAATACGATCAAACCGAT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	GATCGATCCAATCTACCAATTCCTTTAATGGTAAT
GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC	CACGGTTCGTCTATGCCTTCGGATTGCCACCGCTTC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CATGCTGCTAGACTCGTATGCCGTTTCAATCCGGG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AGCAATCCGATGCCGGTCGCGTAGCAGCGATTTAACGC
GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC	CGGTTCGGGACCGTGGATGAACCCACCTATACCTT
GTCGCTCCCCCCGCGGGAGCGTGGATAATATC

>NZ_CP013653|6|5|1708900-1709872|CRT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CCATATCCATTTGAGAGCAAACAGCACGATCAAT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	ATATGCTCGGCATCCCTGCCCCGTCATCATTACG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	ATGTCCAACAGCGATTTTCATGCGAAGATCAGA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	TTCCGTTGTTGCCGTTTCTGCCGCCGGTACCTCCGG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	ATTAAAAAATTCATTGAAACGTGGCTCGCCGATTATA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	ATTCTGTCGGGATTTTAAGGCGGATAGCTCGTCTAA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CGTACACGGGATCCACAAAAACCTCACTGGCTGA
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CTCGGACAGTGTGTTTGTGAATGCCGGGTCAAC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AGTATGAACAGTTCATCGACAATACGATCAAACCGAT
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	GATCGATCCAATCTACCAATTCCTTTAATGGTAAT
GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC	CACGGTTCGTCTATGCCTTCGGATTGCCACCGCTTC
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	CATGCTGCTAGACTCGTATGCCGTTTCAATCCGGG
GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC	AGCAATCCGATGCCGGTCGCGTAGCAGCGATTTAACGC
GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC	CGGTTCGGGACCGTGGATGAACCCACCTATACCTT
GTCGCTCCCCCCGCGGGAGCGTGGATAATATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013653.1\|WP_062491812.1\|1702187_1704104_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP013653.1\|WP_160327776.1\|1697954_1698728_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237345
NZ_CP013653.1\|WP_062491830.1\|1723247_1723967_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NZ_CP013653.1\|WP_160327775.1\|1697181_1697949_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP013653.1\|WP_062491819.1\|1706743_1707610_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|224520
NZ_CP013653.1\|WP_062491834.1\|1725884_1726751_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_CP013653.1\|WP_062491814.1\|1704069_1705410_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|370625
NZ_CP013653.1\|WP_160327777.1\|1720109_1720271_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062491823.1\|1710015_1711572_+\|TIGR02677-family-protein	unknown	unknown	gnl\|CDD\|378233
NZ_CP013653.1\|WP_062491816.1\|1705399_1706362_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP013653.1\|WP_062491824.1\|1717205_1718957_+\|DUF2399-domain-containing-protein	unknown	unknown	gnl\|CDD\|370606
NZ_CP013653.1\|WP_062491810.1\|1700925_1702191_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NZ_CP013653.1\|WP_062491832.1\|1723967_1725884_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP013653.1\|WP_062491817.1\|1706368_1706740_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	COG3337_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NZ_CP013653.1\|WP_062491828.1\|1720784_1723211_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP013653.1\|WP_062496622.1\|1712871_1717047_+\|TIGR02680-family-protein	unknown	unknown	gnl\|CDD\|274256
NZ_CP013653.1\|WP_145977163.1\|1699136_1699415_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062491826.1\|1719909_1720113_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062491821.1\|1707575_1708589_+\|hypothetical-protein	PD-DExK	mkCas0090_PD-DExK_CAS-I:CAS-III	unknown
NZ_CP013653.1\|WP_082655128.1\|1711573_1712782_+\|TIGR02678-family-protein	unknown	unknown	gnl\|CDD\|378234

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP013653.1\|WP_062491816.1\|1705399_1706362_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	3.4e-81	267.6	0.0
NZ_CP013653.1\|WP_062491812.1\|1702187_1704104_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	4.6e-75	248.0	0.3
NZ_CP013653.1\|WP_062491810.1\|1700925_1702191_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	2.4e-55	182.8	0.1
NZ_CP013653.1\|WP_062491830.1\|1723247_1723967_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	4.8e-67	220.4	0.0
NZ_CP013653.1\|WP_062491828.1\|1720784_1723211_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	8.8e-77	253.7	0.1
NZ_CP013653.1\|WP_062491817.1\|1706368_1706740_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	COG3337_cmr5gr11_CAS-III-B	4.1e-24	79.9	0.0
NZ_CP013653.1\|WP_062491819.1\|1706743_1707610_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	2e-51	169.8	0.0
NZ_CP013653.1\|WP_062491814.1\|1704069_1705410_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	2.4e-66	219.5	0.1
NZ_CP013653.1\|WP_062491834.1\|1725884_1726751_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	9.4e-117	384.0	0.1
NZ_CP013653.1\|WP_062491821.1\|1707575_1708589_+\|hypothetical-protein	PD-DExK	mkCas0090_PD-DExK_CAS-I:CAS-III	1.9e-27	90.1	1.9
NZ_CP013653.1\|WP_062491832.1\|1723967_1725884_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	3.7e-163	538.7	0.1

Protein	Function_ID	Function_description	E-value
NZ_CP013653.1\|WP_062491812.1\|1702187_1704104_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.16527e-75
NZ_CP013653.1\|WP_160327776.1\|1697954_1698728_+\|hypothetical-protein	gnl\|CDD\|237345	PRK13315, PRK13315, heme oxygenase.	9.79892e-25
NZ_CP013653.1\|WP_062491830.1\|1723247_1723967_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	5.30456e-96
NZ_CP013653.1\|WP_062491817.1\|1706368_1706740_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	2.72369e-22
NZ_CP013653.1\|WP_062491819.1\|1706743_1707610_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|224520	COG1604, COG1604, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.19922e-54
NZ_CP013653.1\|WP_062491814.1\|1704069_1705410_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|370625	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3). CRISPR is a term for Clustered Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family, found in at least ten different archaeal and bacterial species, is represented by TM1793 from Thermotoga maritima.	2.62607e-65
NZ_CP013653.1\|WP_062491823.1\|1710015_1711572_+\|TIGR02677-family-protein	gnl\|CDD\|378233	pfam09660, DUF2397, Protein of unknown function (DUF2397). Proteins in this entry are encoded within a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).	1.10043e-156
NZ_CP013653.1\|WP_062491816.1\|1705399_1706362_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.54422e-87
NZ_CP013653.1\|WP_062491824.1\|1717205_1718957_+\|DUF2399-domain-containing-protein	gnl\|CDD\|370606	pfam09664, DUF2399, Protein of unknown function C-terminus (DUF2399). Proteins in this entry are encoded within a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Beta-proteobacteria). Just the C-terminal region is ioncluded here.	2.93116e-28
NZ_CP013653.1\|WP_062491810.1\|1700925_1702191_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.39775e-45
NZ_CP013653.1\|WP_062491832.1\|1723967_1725884_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	2.16943e-170
NZ_CP013653.1\|WP_062491828.1\|1720784_1723211_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.36855e-64
NZ_CP013653.1\|WP_062496622.1\|1712871_1717047_+\|TIGR02680-family-protein	gnl\|CDD\|274256	TIGR02680, conserved_hypothetical_protein, TIGR02680 family protein. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. [Hypothetical proteins, Conserved].	0
NZ_CP013653.1\|WP_160327775.1\|1697181_1697949_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.57008e-110
NZ_CP013653.1\|WP_062491834.1\|1725884_1726751_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	2.0479e-121
NZ_CP013653.1\|WP_082655128.1\|1711573_1712782_+\|TIGR02678-family-protein	gnl\|CDD\|378234	pfam09661, DUF2398, Protein of unknown function (DUF2398). Proteins in this entry are encoded within a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).	5.46912e-114

>NZ_CP013653.1|WP_062491821.1|1707575_1708589_+|hypothetical-protein
MGKSRNIVQTTNEDLIDEGILSQIKLNYIRLEESIISQLGMANKKHHVTTGTFREDIWRSLFEQIIPRKFSIEQSVFIMDSQKRVSKEVDLAIFDEMYTPYIFRYGRIKYIPIEAVAVVIQCKSENVTNKKEKKTLSDWYESIKILQTSLKSVTRFATNLGLGEFEYKKDKNDKPCLPPGGRRLTQTATRPIRILCHTNQKSDEDLLESFDIIIHPKRDKKGLNVLLNKESKDQENNLAYWYESLNHANEYYSNLKQDFWDGKKTEDLSKTFNIDNYRVYDSADEKSRTEISVLSLTFLLNQLLMLLNNPIPFPHLAYAKMFNEISSSISRRGSRPS
>NZ_CP013653.1|WP_062491819.1|1706743_1707610_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MNVHLALTKLRQSFDTEFNLEKAVSKTDESNEAKASYYRNVIQMHVKNWDTNKDWYTQKFRQYEEMIKTEFSGFAVSFEMRTSCSSLLLIGQGGISVLETPLTLHKTYGLPYIPGTALKGLTSRYYHRRLGSQKSEFPEWDAYYNILFGIKEKAGVISFHDAWITPETARQAFVLDVMTPHHQSYNGIRIGELDRHQGQSRLDAPRDDDAPVPIPFLAVSGTFRFYLTCSPDTDNGPEWLRIARKILMHALEHEGIGGKTNAGYGRLEAEKGEGDVQDGEKPEHRSDN
>NZ_CP013653.1|WP_062491817.1|1706368_1706740_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MRSIADTYAKQALQSVRNVQQMKFAKEYGRLCHQFPIMVLTNGLRLTVAFFISKQKDEESPYTEYLKHIGLATGLDENWYKGDILNGSMTEYRDLTRRMLAASVWFKRYAEAILKVDPADMGD
>NZ_CP013653.1|WP_062491816.1|1705399_1706362_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MLDNSRLYMIHCMSPVHVGAGQGVGVIDQPIMREKATEWPFIPGSSIKGVHREYFRQKRSNMRSDIAGASGNGEEDEWVAAAFGKSSDTADMGNAGALVMSDARILAFPVASMNGTFAYVTCPLVLKRLQRDLDVMNLKMPALDWDALKKKLDSVRQDNGAEGYVIISRGSKLTGQNDTVFLDEFESDALKDESFTQWSEWLADQVAPDDISGKLIKERTALVSDDAFQYFVTMCSEITARIRMDPERKTVENRALWYEEYLPAESILYGLIWCDFKPAGGWTERDLLNAFPAEGAYLQLGGNASVGKGRVRCVYVGRES
>NZ_CP013653.1|WP_062491814.1|1704069_1705410_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MSRHTLFIQPLEPLMLRDGRPFGATPGAEARSLDQITPGVLAGSLRTMLGKELHRSNVGDLQNSPIYRSDVRGPLYMWGERLFFPMPQDVEVYERKRVDGSREVYVAGRRPCRPPEDRSKLGFLGTGTTGLHEERLWPVMTNASAKPFRPAPAFISKEWMIRWLCEEADEEQWTEAIQDWLNQRREPQSNRSPEKDNDHFREPFVRETRVHTSIDAEKYVAQDQELYSTEYVTLPSDVSIVASIDTPDGCPWPGEVNGIHSFGGRRRLAYFQELHDQQEIWACPERILQVVDRYARTSETTYLRMVLTTPAYFSKGWIPGWLNEELKSADKDKFLKLFGVDLTLELVWACLPRWQPVSGWSYSARRAHRREKAVRRMAPAGSVYFFKVTNGSPEDLVHFVKRNWLAPVSDDDRRKDSFFDRRNGHGLAVWGIWTPAKAQWGENDAR
>NZ_CP013653.1|WP_062491812.1|1702187_1704104_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MIGGAEKNQLETTRPHTVMIITLGPVQEFIAQARKTRDLWFGSHLLSEISKEAARHLLVNHQANLIFPHIVQDLAPEKLKSLKVANKVVAIVETDSPREVALDVQRAVVRRWHQYADLAKERLLLLDCINESIWDRQVSDLVEFYAVWASIESFGSYAAAREQAENLMAARKTLRDFRPNKKAKLYGDKKSSLDPGRESVLLQEKQALYKRFGVKKGETLDAISMVKRMSRYTTNEPLDFISVCDIAFRQYQHRLSGLSDTPFNRHVRDYYEELKRVFPEISSKRTGEYESPYEYDSRFFYAGRIEEGIAELAQGRRTEREQEQLVRQMSAMLEQLYQKTGVQPTPYFALLVADGDRMGECLKMMDSPEEHRQFSKHLSRFAEKVEEIVQGSPEVPLNRREGQLVYSGGDDVMAFVPVYRCLEVSERIRQAFAETMEDAVSGNGPKPTISIGIAIVHMMEPLGESLRRARQAEIAAKGLRDALAIHFQKRSGSEELKVVLPFRLEPVQAIRQLMEMYAAGEYSTSFAYSLRQLHADYDRRKSQWDLSQEEMGELLHMEVQRLIKKKMQRKVIRQNPADHAPDLSRLSAFFDELKHWKPSNAETVLERLHRIAEQFVLAATLGKAGGSNEQTHSVHPAS
>NZ_CP013653.1|WP_062491810.1|1700925_1702191_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MTRSNGVVPPCLDTINKRLSDTSNIASEVFEIQTVTPMIGGSSTPGKVNEKEPVRSASIRGHLRFWWRATRGAAFAEVSDLRRREAEIFGDTETPSRVKIWVSYGEATKATAWVPNYIMINRELKASSDRFKFNLHLQYSGEGEESDSNPLSVKALKQEVHAALWAWVNFGGIGSRTRRGCGSLFSDDFSPSREHTNLKVWYESKLKDFEIKLNTNTATQQWPKLKEVHFGKRGEITEVWKQLINSYKNFRSGPTWRSEANSVRLLTGMGRPRQAPISFKRSQLGMPIVFQVKDPREPYQAQLVPEGKSRLASPLILKPIAINHNEGAELIEGAELIVVLNQPPIEAVRLEVVESKKDKKNRKDRNFDINHLQQVKQRVDRKCPISSEAVYGHKGKERYSAIDDFIQKWMKGNFNRKWREK
>NZ_CP013653.1|WP_145977163.1|1699136_1699415_+|hypothetical-protein
MLENLEGGPDFDVKGIEFGNVLAARFGAVQPMAKLFQEEQIAFYMKDWMCALEHAFVRTSDCRREYNAVWRFRAIRKWTASKLLLNFDFGVS
>NZ_CP013653.1|WP_160327776.1|1697954_1698728_+|hypothetical-protein
MSAKPLDTELVRAFVGAAHADLPKVQQLLEQEPGLLHASMNWGGGDWETALGAASHVGRRDIAEWLLARGARMDLFAAAMLGELEFVQAVLSKYPHLVHATGPHQISLLQHALMGGEAAKEVASYIRSLLGEEEKEESGMIVVENKIEVRAGYADAVLERFKTPKTVHTFPGFVRMDVLHAINADGNEEVRVCTTWENEEAFEGWASSDAFRRAHARRKEEAASDKEGAEHNPIIGNKMTIYRVAASHFPAAKTSIM
>NZ_CP013653.1|WP_160327775.1|1697181_1697949_+|ATP-binding-cassette-domain-containing-protein
MKYGYRTNTVIEGFDLDVKPGEWLGIVGPNGSGKSTVLRMLARLIQPHHGTVAMYGECISGMSTKAIAKKLTMLSQSQEAALDITVRELVRRGRNPHLNWYEECRGEHEKVVDWALQSTKMTELQHRSLLALSGGERQRAWLAMCMAQSPEILLLDEPTTYLDIAHQLELMELIRGLNKEQSLTVVMVLHDLNQAARYCDRIVAIKDGAVVREGRPSEVFQPQFFREVFGIEAKIHDDDGIPFYLPCGIACEREG
>NZ_CP013653.1|WP_062491823.1|1710015_1711572_+|TIGR02677-family-protein
MEHQGPGLPAQALRGIPELKYVNADNVARYRAIMRFFYQEYKRLKYWLKPEEVYETMKAWNIWPDYTPEMCHHDLEQLVEWQNLTARHDGGRSSTLEEYLKKKMQYSLRPYSIEIERLLENLEKVTGYGGSLESSLFDTIAEKLFAIRRDADRWQPEEALELWNVLYRSFVSLHENAADYIASLQTAKAEEMMVTEAFLVFKEKLTDYLQNFVQALQRSAYKIEGNLLRINDSVRDLFLEKVAEGELAKPRLEEGPDKEEWMKELQRSWANIRRWFIGEGNTPSELTLLERATKDTIARIVRSAIRIQERKRAGLSRKKELEHLARWFASLDSVDDAHRLAAFAFGLFPTRHLQGEDLRDSDRADMSSWEERPMVRMLRSRSRKRGERLQSDPVRDNEERKRREREAYRIRQAEEMRMIEAMLERGRVRISEMGVVTAKERLRLLQWIGRCMTAGKTYTFVTPEGVRIRMSNPRTDKRTILYAEDGELEMADYELHFMLTNTAAALEAAASAEERGDQ
>NZ_CP013653.1|WP_082655128.1|1711573_1712782_+|TIGR02678-family-protein
MASGALRRAVRKERNAEQLAERKRACMHALLNRPWVTKEDDPDLYFAIKDHYEELRDWFMDKAGFPLIVTRSMAKLDKTPVKAFPWMGFAEFRETSDYVFFTYGLWYLEGKTELDQFLLSDIVEEVREQMLGAGLEADWRNYYHRLSMARALKKLRSLGVLYNVDGDESFWAQDAERNALYECSPLTRYVLRRFPRDLTECSTLEELTDPIPYADTQDGQSMRRRHRVYRRLLLEPVVTDRQWDEEDLNYVLWQRRAIIDQLGKTFGWVGRRYREGLLFFHPELTGEGELFPTLSAASDLALLAAGEIRKQLAEGGGLYTEDNGTIRLTRAEMETIMYRLQSRHKEYWSKELRESASQELAELCMNHLAEWGLGEWESEASFLVSPVLGRWNADYANSDFDA
>NZ_CP013653.1|WP_062496622.1|1712871_1717047_+|TIGR02680-family-protein
MRRADGAQPPDRWQMNRVGILNFWYYDEEEFQLEDGRLILRGANGSGKSVTMQSFLPLVLDGDKRPHRLDPFGSRDRRIEYYLLGEDDDGKGKTDATGYLWMEFRHGRTGAFKTIGIGLRARRNASQVQFWGFVLEDGRRIGRDFWLYDRNRWLEDQVRIPLDRKELEGKIGSGGMVVQDQKSYQDLVNKQIFGFADIEAFQDLLQLMIQLRSPKLSKDFKPSAIYEILHQALPPLMEEELRPLSEVLEDMDQMADRLDEIRRHRGEMVRLQERYDFYNKHILYTKAGELLENHASYKEVAARVKASETALEQAEREKEAAAAERADIQRRLQDIALERELLEKHEAIGKQREYEAAAKALEDTERQLERSRDKAQKARIRQDRLQREQEEAASSRDASERIQRETLDEMEQMAGEMEFAEHAVYHRYWTPNVPEDDAWKDAWRRDIRRHRERVELALVKAAEEREAASMVKEREIELGEASRVRDEAERERAEREKRLEEAKERLKDAIVVWRDGLKELEFGDEAIRETFGAIRNYGPEQPSLELVRAPLLQRYAVGRDALVERRLGFERRRDELLEQKRRLEEEKRSWEESREPEPPRSEARENFRRGKARVGAPLYALCDFRKQVGEEERARIEEALERAGLLDAWISPDGWLEDCGSGDEEAWIVPKPIEFGYTLADLLVADPPEESGVTAEMVDAVLRSFLWDEGSALQDGADWHGIIAADGSYRLGPLAGRSRVKVRAEYIGRETRKRTRMFEIARLAEAIAAVEAELHEVQLSIDGQREAESRLAEERDRFPDGTELTDGLRALQEAGYRLEAALRHEERALERFKAKSEEWRELQRQLHEMTAGWSRLKREKELAEAASVIREYEGALSELHSLWRQYRDASAAWERLRDELETTALELEDEEAQMDELDERRRDQRAQTETLRKLIEELGLADVARRLEEIRAEQTALVQRNREQERLLDAAKDKAARAEAQLALLSEQAEGRKLGLDRATVQLWTELRRGLVPEWREELREEWPGDERNDAEPFAVQPPEGDAACQLAREIRRRYEPLFAGRNAENITNRLLEQFTAARMMLTEYVLQTTDDETTGRILVHSMRDPHRPLPPQTLLDELAEQEAEQSALLSEKDRELYEEIILRSVGKAIRQRIHRAEQWVREMNKLMEERDTSSGLRLRLEWEPKPASGEQQLDVYDLVEMLKRDSHRLREDEIDAMIEHFRAQIAGAKQSAEEEQESLRQHLYRALDYRNWFYFELKYKKGEQTGYRPLTDARFNVLSGGEKAMAMYIPLFAATWSRYSDARSDAPRLISLDEAFAGVDEENMRDMFKLLTDMGFDYMMTSQVLWGCFDTVPKLAIYEIYRPKDVDFVTLFRYRWNGKRREYVENVRTE
>NZ_CP013653.1|WP_062491824.1|1717205_1718957_+|DUF2399-domain-containing-protein
MNGFQGFNREDRTNGLRADRGERAKAYFSRPGFERPLQAVWDRYASFGKARGNAVVRNATPEECEMVNSFMGWNVKPGGDIRLPLAAFERELLESAFAMTIEELHAVLTGEPLLTKSDRQQLDRQEWEELFRIVKGKLEREEGLLHPVVADWLEQLKAGKADGYRMLRELWRQYAQDAERELANAAAAWNLLLARHLGSEQRLEESSMQSIEPLLGGLRSDDSRLDGSLDRSGPASPSDGLHPIRLPVLAALATGNPHALDRNVPAGRLLFQALRVSARRAVPEPGQDQESEVRCRADRIGQMGLISQVDRTGQAVNAADSAEAAAGSDSDSDFESESAGTPERDSSIEEPEASAIEADSLASREIYRVAGIADDDISTLVHVFIPWESGGLSILSLRQIERMKQVPFAGDLYVVENPAVFSTLIDMTERWLEKGGAFRLSVDGPALLCTSGPASAAALRLLDRYVQEGPRCGTLYYSGDFDVKGIEIGNVLAARYRGQFRPWRFDSQSYAAGSRSSNREGVRFSDEERNRLKQMGAVWDDSLCRAMSGIGRKLFQEEQIAFYMEDWMCALEHAVAGVSDSSK
>NZ_CP013653.1|WP_062491826.1|1719909_1720113_+|hypothetical-protein
MERKGTSATRAKNKYNASNYDRLYPYVPKGRKKEYEAAAKKANMSLNEFIIEALEEKVERVQKGEEA
>NZ_CP013653.1|WP_160327777.1|1720109_1720271_+|hypothetical-protein
MKVTHLDYTVVNDVIYPLLFVDQDLLDYFIEEDLAGRIELKFIPRRRKKSVLL
>NZ_CP013653.1|WP_062491828.1|1720784_1723211_+|CRISPR-associated-helicase/endonuclease-Cas3
MDYIAHIREKDGKIQTTTEHSIEVKQACEDTGSKIGLRYLAGLSGWLHDMGKNTLSFKSYIEEAAANPDNPPRRGSVDHSTAGGKLLYDRFHRGAKTSLDKLTAECVANCIISHHQGLRDFLDPQSSSPFLDRVANKELPDYEQAKAVFLRSVGDAEFEQYFAEARKELAEVLERIQKHALPPIVFSLVMKYIFSCLIDADRTNTRQFEEDEAPEAPFDSAAFFNRCYDLLMKKIRGFDRDRNASHPINRLRREMSDQCEAFALERPSGIYTLSIPTGGGKTLASLRYAIKHAIATGKERIVYIVPYTTIIEQNAAEIRDILQEHDLILEHHSNVVEEIGEETEDYDVQKKKIRLARDNWDRPIIFTTMVQFLNTFYAKGTRNIRRMHRLVNSVLIFDEVQSVPLKCISLFNAALNFLHFFGRSSVVLCTATQPALDYVKHHLRLSERPEMIGSLDKVAQRFKRVEIEDRTEPEGWGAERLAEFVGERLEEVRSVLVILNTKTAVRKLFDRLAKDPRIGESGMRLFHLSTNMCAAHRKNVLAEMIAALEAEERVVCVSTQLIEAGVDISFECVIRSLAGLDSIAQAAGRCNRHGKDAIRKVYIVKSADEVLTRLPEMKTGAQITERLLYEFRQSPERFGHELLSAAAMNAYFRYFFHQMKEEMDYPIPQLDYKMFDLLSANKMYYEAYKNKHGRAPEILSRSSFATAERYFEAIGNAAASVLVPYNEDAESLILDLNGELDSQKLGDLLRKAQKYVVNIYDHEMRKLIRNEDVYPLLHGHVLALRKAAYSDLVGVETDGEGEWETAVI
>NZ_CP013653.1|WP_062491830.1|1723247_1723967_+|type-I-C-CRISPR-associated-protein-Cas5
MRNQIEFEVYGNYALFTDPLTKIGGEKFSYQIPTYQALKGIVESIYWKPTIIWYIDEVRVMNPIQTESKGIRPIEYNGGNTLAYYTYLKDVRYQVRAHFEFNPHREDLVHDRNEHKHHNISKRALQAGGRRDIFLGTRECQGYVEPCVFGEGAGFYDQTPEIDFGIMVHGINYPDETGRQERETRLWRAKMEYGIIRFIRPEDCTLIRKTGEGTIKPFDTSNIQPVDAMYQELFADGGE
>NZ_CP013653.1|WP_062491832.1|1723967_1725884_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MTWLAQLNKTYENHAHVVGQFEKKWNDREYALIPVSHTTQSAHIEVHLDDRGHFVSANVVDKNEANTIIPCTEASASRTSKPVPHPLFDKLMYVAGDFAKYCEEPKGTPYEDYMAQLSDWCESPAAHPKVKSVYTYLRKGTLVEDLIKYKVLWLDGQGKLADKWTEELENRYGERPEIFKVIASDQSAAFVRFAVHVPGDVEPRLWRDMSVQNSFIQYYEMKLTDYDLCYVSGRELPYADKHASRIRNSADKSKLISANDTDGFTFRGRFRTSREAAAVAYDVSQKAHNALKWLIDKQSFTIDGKVFLVWGTENLNVPDPFADSFTLYDHEDETQGIGDSTHKEFAKRIRMAINGYRYDGDYKSEVIVMVLDAATPGRMSIVYYRDMNKELFLNRLQYWHESCFWLHRYRKDSENRTVSFVGAPAARDIAFAAYGPQANDKVVKGLIERMLPCIIDGRKIPFDIVRSAIHRASNPVGMEEWEWEKTLSIACALVNKTYEKEGFDVSLDTNCQDRSYLFGRMLAIADRLERKALGREEKRATNAIRYMNAFAQRPMRTWTIIQAAIQPYQARMGTDANFYNRLLDEVGSQLQPEHFTDKPLSGLYLLGFYSQRHELSNFKKNNDTVEAMDNEDDEQEEI
>NZ_CP013653.1|WP_062491834.1|1725884_1726751_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MKALDRKIDFAVVLSVRNANPNGDPLNGNRPRQNYDGHGEISDVCIKRKIRNRLQDMGESILVQSDDRRTDEYRSIKERVDANADVQEFAKGKKQNNELFARAACEAWLDVRCFGQVFAFSGTDVSIGIRGPVSIHTAVSLHPIDITSIQITKSVNAVTPKDPNKRSSDTMGMKHRVDFGVYVFYGSMNPQLAEKTGFTYEDAIKVRNALITLFENDASSARPDGSMEVHRVYWWEHKSKMGQYSSAKVHRSLQLRLREGAEEAKSVDDYSFTVLPLEGLDVQEYAGL

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Crispr_ID: NZ_CP013653_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013653_7

1719288-1719785

TypeI

I-C

Consensus_repeat	Method
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	PILER-CR
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	CRT

7 spacers

PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas3,cas5,cas8c,cas7,cas1,cas2

The CRISPR arrays of NZ_CP013653_7

>merge|NZ_CP013653|7|1719288-1719785|PILER-CR,CRISPRCasFinder,CRT
GTCGCTCCCCATGCGGGAGCGTGGATTGAAACACTGGCGTCTGCAATGGCGCAATACGGGCAGATCGTCGCTCCCCATGCGGGAGCGTGGATTGAAACATAGCGTGACGGATCAGCATACCACCGCAATCCCTCGTCGCTCCCCATGCGGGAGCGTGGATTGAAACTTGCCCTACCTCGGGCATTACGCCCGTTCGTCCCGTCGCTCCCCATGCGGGAGCGTGGATTGAAACCGCGATTTCCTTAACGTCCTCGACATTGATCATCGTCGCTCCCCATGCGGGAGCGTGGATTGAAACGCATGATGAGCTGATCGACTCCTACGTACAGGAGATTGTCGCTCCCCATGCGGGAGCGTCGATTGAAACTTCCCGGGCGTTGAAACGTTCGTGACGGAGGACGTCGCTCCCCATGCGGGAGCGTGGATTGAAACCGATTGGATGCCGACGGCGAAAACGTAGACATATGTCGCTCCCCATGCGGGAGCGTGGATTGAAAC

>NZ_CP013653|7|5|1719288-1719785|PILER-CR
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	ACTGGCGTCTGCAATGGCGCAATACGGGCAGATC
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	ATAGCGTGACGGATCAGCATACCACCGCAATCCCTC
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	TTGCCCTACCTCGGGCATTACGCCCGTTCGTCCC
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	CGCGATTTCCTTAACGTCCTCGACATTGATCATC
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	GCATGATGAGCTGATCGACTCCTACGTACAGGAGATT
GTCGCTCCCCATGCGGGAGCGTCGATTGAAAC	TTCCCGGGCGTTGAAACGTTCGTGACGGAGGAC
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	CGATTGGATGCCGACGGCGAAAACGTAGACATAT
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC

>NZ_CP013653|7|5|1719288-1719785|CRISPRCasFinder
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	ACTGGCGTCTGCAATGGCGCAATACGGGCAGATC
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	ATAGCGTGACGGATCAGCATACCACCGCAATCCCTC
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	TTGCCCTACCTCGGGCATTACGCCCGTTCGTCCC
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	CGCGATTTCCTTAACGTCCTCGACATTGATCATC
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	GCATGATGAGCTGATCGACTCCTACGTACAGGAGATT
GTCGCTCCCCATGCGGGAGCGTCGATTGAAAC	TTCCCGGGCGTTGAAACGTTCGTGACGGAGGAC
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	CGATTGGATGCCGACGGCGAAAACGTAGACATAT
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC

>NZ_CP013653|7|6|1719288-1719785|CRT
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	ACTGGCGTCTGCAATGGCGCAATACGGGCAGATC
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	ATAGCGTGACGGATCAGCATACCACCGCAATCCCTC
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	TTGCCCTACCTCGGGCATTACGCCCGTTCGTCCC
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	CGCGATTTCCTTAACGTCCTCGACATTGATCATC
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	GCATGATGAGCTGATCGACTCCTACGTACAGGAGATT
GTCGCTCCCCATGCGGGAGCGTCGATTGAAAC	TTCCCGGGCGTTGAAACGTTCGTGACGGAGGAC
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	CGATTGGATGCCGACGGCGAAAACGTAGACATAT
GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013653.1\|WP_062491838.1\|1728377_1728668_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP013653.1\|WP_062491812.1\|1702187_1704104_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP013653.1\|WP_082655128.1\|1711573_1712782_+\|TIGR02678-family-protein	unknown	unknown	gnl\|CDD\|378234
NZ_CP013653.1\|WP_062491830.1\|1723247_1723967_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NZ_CP013653.1\|WP_062491836.1\|1727337_1728369_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP013653.1\|WP_062491817.1\|1706368_1706740_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	COG3337_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NZ_CP013653.1\|WP_062491819.1\|1706743_1707610_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|224520
NZ_CP013653.1\|WP_062491834.1\|1725884_1726751_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_CP013653.1\|WP_062491814.1\|1704069_1705410_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|370625
NZ_CP013653.1\|WP_160327777.1\|1720109_1720271_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062491823.1\|1710015_1711572_+\|TIGR02677-family-protein	unknown	unknown	gnl\|CDD\|378233
NZ_CP013653.1\|WP_062491816.1\|1705399_1706362_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP013653.1\|WP_062491824.1\|1717205_1718957_+\|DUF2399-domain-containing-protein	unknown	unknown	gnl\|CDD\|370606
NZ_CP013653.1\|WP_062491832.1\|1723967_1725884_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP013653.1\|WP_062491828.1\|1720784_1723211_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP013653.1\|WP_062491826.1\|1719909_1720113_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_082655552.1\|1729298_1730162_-\|HD-GYP-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NZ_CP013653.1\|WP_062496622.1\|1712871_1717047_+\|TIGR02680-family-protein	unknown	unknown	gnl\|CDD\|274256
NZ_CP013653.1\|WP_062491821.1\|1707575_1708589_+\|hypothetical-protein	PD-DExK	mkCas0090_PD-DExK_CAS-I:CAS-III	unknown
NZ_CP013653.1\|WP_062491840.1\|1730356_1732219_-\|DUF342-domain-containing-protein	unknown	unknown	gnl\|CDD\|377177

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP013653.1\|WP_062491838.1\|1728377_1728668_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	5.2e-31	101.5	0.2
NZ_CP013653.1\|WP_062491812.1\|1702187_1704104_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	4.6e-75	248.0	0.3
NZ_CP013653.1\|WP_062491830.1\|1723247_1723967_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	4.8e-67	220.4	0.0
NZ_CP013653.1\|WP_062491836.1\|1727337_1728369_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	1.5e-147	485.8	0.3
NZ_CP013653.1\|WP_062491817.1\|1706368_1706740_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	COG3337_cmr5gr11_CAS-III-B	4.1e-24	79.9	0.0
NZ_CP013653.1\|WP_062491819.1\|1706743_1707610_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	2e-51	169.8	0.0
NZ_CP013653.1\|WP_062491814.1\|1704069_1705410_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	2.4e-66	219.5	0.1
NZ_CP013653.1\|WP_062491816.1\|1705399_1706362_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	3.4e-81	267.6	0.0
NZ_CP013653.1\|WP_062491832.1\|1723967_1725884_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	3.7e-163	538.7	0.1
NZ_CP013653.1\|WP_062491828.1\|1720784_1723211_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	8.8e-77	253.7	0.1
NZ_CP013653.1\|WP_062491834.1\|1725884_1726751_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	9.4e-117	384.0	0.1
NZ_CP013653.1\|WP_062491821.1\|1707575_1708589_+\|hypothetical-protein	PD-DExK	mkCas0090_PD-DExK_CAS-I:CAS-III	1.9e-27	90.1	1.9

Protein	Function_ID	Function_description	E-value
NZ_CP013653.1\|WP_062491838.1\|1728377_1728668_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.19745e-34
NZ_CP013653.1\|WP_062491812.1\|1702187_1704104_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.16527e-75
NZ_CP013653.1\|WP_082655128.1\|1711573_1712782_+\|TIGR02678-family-protein	gnl\|CDD\|378234	pfam09661, DUF2398, Protein of unknown function (DUF2398). Proteins in this entry are encoded within a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).	5.46912e-114
NZ_CP013653.1\|WP_062491830.1\|1723247_1723967_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	5.30456e-96
NZ_CP013653.1\|WP_062491836.1\|1727337_1728369_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP013653.1\|WP_062491817.1\|1706368_1706740_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	2.72369e-22
NZ_CP013653.1\|WP_062491819.1\|1706743_1707610_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|224520	COG1604, COG1604, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.19922e-54
NZ_CP013653.1\|WP_062491814.1\|1704069_1705410_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|370625	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3). CRISPR is a term for Clustered Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family, found in at least ten different archaeal and bacterial species, is represented by TM1793 from Thermotoga maritima.	2.62607e-65
NZ_CP013653.1\|WP_062491823.1\|1710015_1711572_+\|TIGR02677-family-protein	gnl\|CDD\|378233	pfam09660, DUF2397, Protein of unknown function (DUF2397). Proteins in this entry are encoded within a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).	1.10043e-156
NZ_CP013653.1\|WP_062491816.1\|1705399_1706362_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.54422e-87
NZ_CP013653.1\|WP_062491824.1\|1717205_1718957_+\|DUF2399-domain-containing-protein	gnl\|CDD\|370606	pfam09664, DUF2399, Protein of unknown function C-terminus (DUF2399). Proteins in this entry are encoded within a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Beta-proteobacteria). Just the C-terminal region is ioncluded here.	2.93116e-28
NZ_CP013653.1\|WP_062491832.1\|1723967_1725884_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	2.16943e-170
NZ_CP013653.1\|WP_062491828.1\|1720784_1723211_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.36855e-64
NZ_CP013653.1\|WP_062496622.1\|1712871_1717047_+\|TIGR02680-family-protein	gnl\|CDD\|274256	TIGR02680, conserved_hypothetical_protein, TIGR02680 family protein. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. [Hypothetical proteins, Conserved].	0
NZ_CP013653.1\|WP_082655552.1\|1729298_1730162_-\|HD-GYP-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	1.34656e-73
NZ_CP013653.1\|WP_062491834.1\|1725884_1726751_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	2.0479e-121
NZ_CP013653.1\|WP_062491840.1\|1730356_1732219_-\|DUF342-domain-containing-protein	gnl\|CDD\|377177	pfam03961, FapA, Flagellar Assembly Protein A. Members of this family include FapA (flagellar assembly protein A), found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction.	1.54388e-59

>NZ_CP013653.1|WP_062491824.1|1717205_1718957_+|DUF2399-domain-containing-protein
MNGFQGFNREDRTNGLRADRGERAKAYFSRPGFERPLQAVWDRYASFGKARGNAVVRNATPEECEMVNSFMGWNVKPGGDIRLPLAAFERELLESAFAMTIEELHAVLTGEPLLTKSDRQQLDRQEWEELFRIVKGKLEREEGLLHPVVADWLEQLKAGKADGYRMLRELWRQYAQDAERELANAAAAWNLLLARHLGSEQRLEESSMQSIEPLLGGLRSDDSRLDGSLDRSGPASPSDGLHPIRLPVLAALATGNPHALDRNVPAGRLLFQALRVSARRAVPEPGQDQESEVRCRADRIGQMGLISQVDRTGQAVNAADSAEAAAGSDSDSDFESESAGTPERDSSIEEPEASAIEADSLASREIYRVAGIADDDISTLVHVFIPWESGGLSILSLRQIERMKQVPFAGDLYVVENPAVFSTLIDMTERWLEKGGAFRLSVDGPALLCTSGPASAAALRLLDRYVQEGPRCGTLYYSGDFDVKGIEIGNVLAARYRGQFRPWRFDSQSYAAGSRSSNREGVRFSDEERNRLKQMGAVWDDSLCRAMSGIGRKLFQEEQIAFYMEDWMCALEHAVAGVSDSSK
>NZ_CP013653.1|WP_062496622.1|1712871_1717047_+|TIGR02680-family-protein
MRRADGAQPPDRWQMNRVGILNFWYYDEEEFQLEDGRLILRGANGSGKSVTMQSFLPLVLDGDKRPHRLDPFGSRDRRIEYYLLGEDDDGKGKTDATGYLWMEFRHGRTGAFKTIGIGLRARRNASQVQFWGFVLEDGRRIGRDFWLYDRNRWLEDQVRIPLDRKELEGKIGSGGMVVQDQKSYQDLVNKQIFGFADIEAFQDLLQLMIQLRSPKLSKDFKPSAIYEILHQALPPLMEEELRPLSEVLEDMDQMADRLDEIRRHRGEMVRLQERYDFYNKHILYTKAGELLENHASYKEVAARVKASETALEQAEREKEAAAAERADIQRRLQDIALERELLEKHEAIGKQREYEAAAKALEDTERQLERSRDKAQKARIRQDRLQREQEEAASSRDASERIQRETLDEMEQMAGEMEFAEHAVYHRYWTPNVPEDDAWKDAWRRDIRRHRERVELALVKAAEEREAASMVKEREIELGEASRVRDEAERERAEREKRLEEAKERLKDAIVVWRDGLKELEFGDEAIRETFGAIRNYGPEQPSLELVRAPLLQRYAVGRDALVERRLGFERRRDELLEQKRRLEEEKRSWEESREPEPPRSEARENFRRGKARVGAPLYALCDFRKQVGEEERARIEEALERAGLLDAWISPDGWLEDCGSGDEEAWIVPKPIEFGYTLADLLVADPPEESGVTAEMVDAVLRSFLWDEGSALQDGADWHGIIAADGSYRLGPLAGRSRVKVRAEYIGRETRKRTRMFEIARLAEAIAAVEAELHEVQLSIDGQREAESRLAEERDRFPDGTELTDGLRALQEAGYRLEAALRHEERALERFKAKSEEWRELQRQLHEMTAGWSRLKREKELAEAASVIREYEGALSELHSLWRQYRDASAAWERLRDELETTALELEDEEAQMDELDERRRDQRAQTETLRKLIEELGLADVARRLEEIRAEQTALVQRNREQERLLDAAKDKAARAEAQLALLSEQAEGRKLGLDRATVQLWTELRRGLVPEWREELREEWPGDERNDAEPFAVQPPEGDAACQLAREIRRRYEPLFAGRNAENITNRLLEQFTAARMMLTEYVLQTTDDETTGRILVHSMRDPHRPLPPQTLLDELAEQEAEQSALLSEKDRELYEEIILRSVGKAIRQRIHRAEQWVREMNKLMEERDTSSGLRLRLEWEPKPASGEQQLDVYDLVEMLKRDSHRLREDEIDAMIEHFRAQIAGAKQSAEEEQESLRQHLYRALDYRNWFYFELKYKKGEQTGYRPLTDARFNVLSGGEKAMAMYIPLFAATWSRYSDARSDAPRLISLDEAFAGVDEENMRDMFKLLTDMGFDYMMTSQVLWGCFDTVPKLAIYEIYRPKDVDFVTLFRYRWNGKRREYVENVRTE
>NZ_CP013653.1|WP_082655128.1|1711573_1712782_+|TIGR02678-family-protein
MASGALRRAVRKERNAEQLAERKRACMHALLNRPWVTKEDDPDLYFAIKDHYEELRDWFMDKAGFPLIVTRSMAKLDKTPVKAFPWMGFAEFRETSDYVFFTYGLWYLEGKTELDQFLLSDIVEEVREQMLGAGLEADWRNYYHRLSMARALKKLRSLGVLYNVDGDESFWAQDAERNALYECSPLTRYVLRRFPRDLTECSTLEELTDPIPYADTQDGQSMRRRHRVYRRLLLEPVVTDRQWDEEDLNYVLWQRRAIIDQLGKTFGWVGRRYREGLLFFHPELTGEGELFPTLSAASDLALLAAGEIRKQLAEGGGLYTEDNGTIRLTRAEMETIMYRLQSRHKEYWSKELRESASQELAELCMNHLAEWGLGEWESEASFLVSPVLGRWNADYANSDFDA
>NZ_CP013653.1|WP_062491823.1|1710015_1711572_+|TIGR02677-family-protein
MEHQGPGLPAQALRGIPELKYVNADNVARYRAIMRFFYQEYKRLKYWLKPEEVYETMKAWNIWPDYTPEMCHHDLEQLVEWQNLTARHDGGRSSTLEEYLKKKMQYSLRPYSIEIERLLENLEKVTGYGGSLESSLFDTIAEKLFAIRRDADRWQPEEALELWNVLYRSFVSLHENAADYIASLQTAKAEEMMVTEAFLVFKEKLTDYLQNFVQALQRSAYKIEGNLLRINDSVRDLFLEKVAEGELAKPRLEEGPDKEEWMKELQRSWANIRRWFIGEGNTPSELTLLERATKDTIARIVRSAIRIQERKRAGLSRKKELEHLARWFASLDSVDDAHRLAAFAFGLFPTRHLQGEDLRDSDRADMSSWEERPMVRMLRSRSRKRGERLQSDPVRDNEERKRREREAYRIRQAEEMRMIEAMLERGRVRISEMGVVTAKERLRLLQWIGRCMTAGKTYTFVTPEGVRIRMSNPRTDKRTILYAEDGELEMADYELHFMLTNTAAALEAAASAEERGDQ
>NZ_CP013653.1|WP_062491821.1|1707575_1708589_+|hypothetical-protein
MGKSRNIVQTTNEDLIDEGILSQIKLNYIRLEESIISQLGMANKKHHVTTGTFREDIWRSLFEQIIPRKFSIEQSVFIMDSQKRVSKEVDLAIFDEMYTPYIFRYGRIKYIPIEAVAVVIQCKSENVTNKKEKKTLSDWYESIKILQTSLKSVTRFATNLGLGEFEYKKDKNDKPCLPPGGRRLTQTATRPIRILCHTNQKSDEDLLESFDIIIHPKRDKKGLNVLLNKESKDQENNLAYWYESLNHANEYYSNLKQDFWDGKKTEDLSKTFNIDNYRVYDSADEKSRTEISVLSLTFLLNQLLMLLNNPIPFPHLAYAKMFNEISSSISRRGSRPS
>NZ_CP013653.1|WP_062491819.1|1706743_1707610_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MNVHLALTKLRQSFDTEFNLEKAVSKTDESNEAKASYYRNVIQMHVKNWDTNKDWYTQKFRQYEEMIKTEFSGFAVSFEMRTSCSSLLLIGQGGISVLETPLTLHKTYGLPYIPGTALKGLTSRYYHRRLGSQKSEFPEWDAYYNILFGIKEKAGVISFHDAWITPETARQAFVLDVMTPHHQSYNGIRIGELDRHQGQSRLDAPRDDDAPVPIPFLAVSGTFRFYLTCSPDTDNGPEWLRIARKILMHALEHEGIGGKTNAGYGRLEAEKGEGDVQDGEKPEHRSDN
>NZ_CP013653.1|WP_062491817.1|1706368_1706740_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MRSIADTYAKQALQSVRNVQQMKFAKEYGRLCHQFPIMVLTNGLRLTVAFFISKQKDEESPYTEYLKHIGLATGLDENWYKGDILNGSMTEYRDLTRRMLAASVWFKRYAEAILKVDPADMGD
>NZ_CP013653.1|WP_062491816.1|1705399_1706362_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MLDNSRLYMIHCMSPVHVGAGQGVGVIDQPIMREKATEWPFIPGSSIKGVHREYFRQKRSNMRSDIAGASGNGEEDEWVAAAFGKSSDTADMGNAGALVMSDARILAFPVASMNGTFAYVTCPLVLKRLQRDLDVMNLKMPALDWDALKKKLDSVRQDNGAEGYVIISRGSKLTGQNDTVFLDEFESDALKDESFTQWSEWLADQVAPDDISGKLIKERTALVSDDAFQYFVTMCSEITARIRMDPERKTVENRALWYEEYLPAESILYGLIWCDFKPAGGWTERDLLNAFPAEGAYLQLGGNASVGKGRVRCVYVGRES
>NZ_CP013653.1|WP_062491814.1|1704069_1705410_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MSRHTLFIQPLEPLMLRDGRPFGATPGAEARSLDQITPGVLAGSLRTMLGKELHRSNVGDLQNSPIYRSDVRGPLYMWGERLFFPMPQDVEVYERKRVDGSREVYVAGRRPCRPPEDRSKLGFLGTGTTGLHEERLWPVMTNASAKPFRPAPAFISKEWMIRWLCEEADEEQWTEAIQDWLNQRREPQSNRSPEKDNDHFREPFVRETRVHTSIDAEKYVAQDQELYSTEYVTLPSDVSIVASIDTPDGCPWPGEVNGIHSFGGRRRLAYFQELHDQQEIWACPERILQVVDRYARTSETTYLRMVLTTPAYFSKGWIPGWLNEELKSADKDKFLKLFGVDLTLELVWACLPRWQPVSGWSYSARRAHRREKAVRRMAPAGSVYFFKVTNGSPEDLVHFVKRNWLAPVSDDDRRKDSFFDRRNGHGLAVWGIWTPAKAQWGENDAR
>NZ_CP013653.1|WP_062491812.1|1702187_1704104_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MIGGAEKNQLETTRPHTVMIITLGPVQEFIAQARKTRDLWFGSHLLSEISKEAARHLLVNHQANLIFPHIVQDLAPEKLKSLKVANKVVAIVETDSPREVALDVQRAVVRRWHQYADLAKERLLLLDCINESIWDRQVSDLVEFYAVWASIESFGSYAAAREQAENLMAARKTLRDFRPNKKAKLYGDKKSSLDPGRESVLLQEKQALYKRFGVKKGETLDAISMVKRMSRYTTNEPLDFISVCDIAFRQYQHRLSGLSDTPFNRHVRDYYEELKRVFPEISSKRTGEYESPYEYDSRFFYAGRIEEGIAELAQGRRTEREQEQLVRQMSAMLEQLYQKTGVQPTPYFALLVADGDRMGECLKMMDSPEEHRQFSKHLSRFAEKVEEIVQGSPEVPLNRREGQLVYSGGDDVMAFVPVYRCLEVSERIRQAFAETMEDAVSGNGPKPTISIGIAIVHMMEPLGESLRRARQAEIAAKGLRDALAIHFQKRSGSEELKVVLPFRLEPVQAIRQLMEMYAAGEYSTSFAYSLRQLHADYDRRKSQWDLSQEEMGELLHMEVQRLIKKKMQRKVIRQNPADHAPDLSRLSAFFDELKHWKPSNAETVLERLHRIAEQFVLAATLGKAGGSNEQTHSVHPAS
>NZ_CP013653.1|WP_062491826.1|1719909_1720113_+|hypothetical-protein
MERKGTSATRAKNKYNASNYDRLYPYVPKGRKKEYEAAAKKANMSLNEFIIEALEEKVERVQKGEEA
>NZ_CP013653.1|WP_160327777.1|1720109_1720271_+|hypothetical-protein
MKVTHLDYTVVNDVIYPLLFVDQDLLDYFIEEDLAGRIELKFIPRRRKKSVLL
>NZ_CP013653.1|WP_062491828.1|1720784_1723211_+|CRISPR-associated-helicase/endonuclease-Cas3
MDYIAHIREKDGKIQTTTEHSIEVKQACEDTGSKIGLRYLAGLSGWLHDMGKNTLSFKSYIEEAAANPDNPPRRGSVDHSTAGGKLLYDRFHRGAKTSLDKLTAECVANCIISHHQGLRDFLDPQSSSPFLDRVANKELPDYEQAKAVFLRSVGDAEFEQYFAEARKELAEVLERIQKHALPPIVFSLVMKYIFSCLIDADRTNTRQFEEDEAPEAPFDSAAFFNRCYDLLMKKIRGFDRDRNASHPINRLRREMSDQCEAFALERPSGIYTLSIPTGGGKTLASLRYAIKHAIATGKERIVYIVPYTTIIEQNAAEIRDILQEHDLILEHHSNVVEEIGEETEDYDVQKKKIRLARDNWDRPIIFTTMVQFLNTFYAKGTRNIRRMHRLVNSVLIFDEVQSVPLKCISLFNAALNFLHFFGRSSVVLCTATQPALDYVKHHLRLSERPEMIGSLDKVAQRFKRVEIEDRTEPEGWGAERLAEFVGERLEEVRSVLVILNTKTAVRKLFDRLAKDPRIGESGMRLFHLSTNMCAAHRKNVLAEMIAALEAEERVVCVSTQLIEAGVDISFECVIRSLAGLDSIAQAAGRCNRHGKDAIRKVYIVKSADEVLTRLPEMKTGAQITERLLYEFRQSPERFGHELLSAAAMNAYFRYFFHQMKEEMDYPIPQLDYKMFDLLSANKMYYEAYKNKHGRAPEILSRSSFATAERYFEAIGNAAASVLVPYNEDAESLILDLNGELDSQKLGDLLRKAQKYVVNIYDHEMRKLIRNEDVYPLLHGHVLALRKAAYSDLVGVETDGEGEWETAVI
>NZ_CP013653.1|WP_062491830.1|1723247_1723967_+|type-I-C-CRISPR-associated-protein-Cas5
MRNQIEFEVYGNYALFTDPLTKIGGEKFSYQIPTYQALKGIVESIYWKPTIIWYIDEVRVMNPIQTESKGIRPIEYNGGNTLAYYTYLKDVRYQVRAHFEFNPHREDLVHDRNEHKHHNISKRALQAGGRRDIFLGTRECQGYVEPCVFGEGAGFYDQTPEIDFGIMVHGINYPDETGRQERETRLWRAKMEYGIIRFIRPEDCTLIRKTGEGTIKPFDTSNIQPVDAMYQELFADGGE
>NZ_CP013653.1|WP_062491832.1|1723967_1725884_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MTWLAQLNKTYENHAHVVGQFEKKWNDREYALIPVSHTTQSAHIEVHLDDRGHFVSANVVDKNEANTIIPCTEASASRTSKPVPHPLFDKLMYVAGDFAKYCEEPKGTPYEDYMAQLSDWCESPAAHPKVKSVYTYLRKGTLVEDLIKYKVLWLDGQGKLADKWTEELENRYGERPEIFKVIASDQSAAFVRFAVHVPGDVEPRLWRDMSVQNSFIQYYEMKLTDYDLCYVSGRELPYADKHASRIRNSADKSKLISANDTDGFTFRGRFRTSREAAAVAYDVSQKAHNALKWLIDKQSFTIDGKVFLVWGTENLNVPDPFADSFTLYDHEDETQGIGDSTHKEFAKRIRMAINGYRYDGDYKSEVIVMVLDAATPGRMSIVYYRDMNKELFLNRLQYWHESCFWLHRYRKDSENRTVSFVGAPAARDIAFAAYGPQANDKVVKGLIERMLPCIIDGRKIPFDIVRSAIHRASNPVGMEEWEWEKTLSIACALVNKTYEKEGFDVSLDTNCQDRSYLFGRMLAIADRLERKALGREEKRATNAIRYMNAFAQRPMRTWTIIQAAIQPYQARMGTDANFYNRLLDEVGSQLQPEHFTDKPLSGLYLLGFYSQRHELSNFKKNNDTVEAMDNEDDEQEEI
>NZ_CP013653.1|WP_062491834.1|1725884_1726751_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MKALDRKIDFAVVLSVRNANPNGDPLNGNRPRQNYDGHGEISDVCIKRKIRNRLQDMGESILVQSDDRRTDEYRSIKERVDANADVQEFAKGKKQNNELFARAACEAWLDVRCFGQVFAFSGTDVSIGIRGPVSIHTAVSLHPIDITSIQITKSVNAVTPKDPNKRSSDTMGMKHRVDFGVYVFYGSMNPQLAEKTGFTYEDAIKVRNALITLFENDASSARPDGSMEVHRVYWWEHKSKMGQYSSAKVHRSLQLRLREGAEEAKSVDDYSFTVLPLEGLDVQEYAGL
>NZ_CP013653.1|WP_062491836.1|1727337_1728369_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLFVTMPDTYLARDGENVVIRKDEEVVARYPLHNLEAICTFGYAGVSPALMGACAERRIALTFMTRSGRFLARVIGEDKGNVVLRKEQYRISDDERRSALIARNMIIGKLYNSKWILERAIRDYSLRIDADRIKRVSVSLSETMKLVRGAENLDVLRGLEGTAAVQYNSVFDQLILQQKEHFFFHGRNKRPPLDNVNALLSFTYTLLANEVKAALEAVGLDAYVGFLHRDRPGRASLALDVMEELRSVYADRLALSLINKKLINEKGFHKKENGAVVMDDDTRKIILKSWQERKQEKIVHPYLNEKISWGLVPYAQALLLARTIRGDLDEYPPFLWK
>NZ_CP013653.1|WP_062491838.1|1728377_1728668_+|CRISPR-associated-endonuclease-Cas2
MLVLITYDVSTTSAEGRRRLTRVAKKCLNYGQRVQNSVFECILDPTQFRRLKYELEALIDKEKDSLRFYNLGENYKAKVEHIGAKSSYDMESPLIL
>NZ_CP013653.1|WP_082655552.1|1729298_1730162_-|HD-GYP-domain-containing-protein
MMEETISEARMIYEKIHNYKEQLSNSQIQSLIMPNILELCANHRFSNMILELRKKDNYTYRHCVGVAVISFLMGKWLGLKEAELRDLAIAGLMHDIGKIKIPDSILNKASRLSADEYAVMKLHTHFGYEMIRHLPEMTEQQALVALQHHEREDGSGYPFGISGEDIAPFSKIVAVADVFHTMISERVYKKPAPLYQVYREIYQRASGLFDPLVVQSFISNVMNRMIGNSVLLSNGQIARITMLHPDDLINPLVVVQGQYYDLRQSDIYIVDFIPNLRKPNRKDLNLR
>NZ_CP013653.1|WP_062491840.1|1730356_1732219_-|DUF342-domain-containing-protein
MSEYISEQDILKLLKKLDQDARSLDQRLNSAATFNSPAIHAEHEVTNGFIKIEDGKIIVGNPSNGGEFPTLRAIPPVKLFVDGKEVKKETKVSSESAIEWKIEEKPLFEISISEDKLEAYLTVNRTQRYAWSIKDHPPVLHGVLRAEEDPSIILETLSLQDVLSKLENMNIKANLDVAAIQAEILQPSHRKVRIARGKPPVQGHDAQLELYFSESIENVFTEINGVVDFRNHLNIPSVKRGDVIAKKIPPVEGQAGYDVFGNAILPKPVKDILIAGKNDVEITPDSMVIAKKAGRPRVTGNKIKYFDISTAFIVPGNVDLETGNIVFSGDVVVYGDVMDNMIIECLGNIYVAGSVFNSTLTATGSIAVQGNVIGSNLYSGYFGVLYNRFYHSSKQLLEILEKIIESEKLLMKEISKKNMQVRYGQVILLIIESKYQQVWGIVKELLGVIASLQSHNSDKDHLQQIKTYLELFLQPTILIQTITAPKLEDFMRILREAYMKVALSQERHVQISISQSQNSTLKSNGDILIKKEGIIQCELYSAGNIIFFLDNSVCRGSKLEAGDTISAMYVGGLTGVGTSLKAGRKVIVKKMFEGRVTVDRYSVDIFEPIEDKTFSRNSFI

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Crispr_ID: NZ_CP013653_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013653_8

1728857-1729094

TypeI

I-C:NA

Consensus_repeat	Method
CGGCGTCGCTCCCCATGCGGGAGCGTGGATTGA	CRISPRCasFinder
CGGCGTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	CRT
CGGCGTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	PILER-CR

3 spacers

cas2,cas1,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP013653_8

>merge|NZ_CP013653|8|1728857-1729094|CRISPRCasFinder,CRT,PILER-CR
TGCTGTCGCTCCCCATGCGGGAGCGTGGATTGAAACGGAAAAATGGACCAAGAAGCGCGGGGCCGTTACGGCGTCGCTCCCCATGCGGGAGCGTGGATTGAAACGTTATTCCAGCGCGGCTAATTGCGCTTCGAGTTCGGCGTCGCTCCCCATGCGGGAGCGTGGATTGATACTCCGCCACCAGCGCATCTAGTTCCCGACCCGGCGTCGCTCCCCATGCGGGAGCGTGCATTGAAAC

>NZ_CP013653|8|6|1728857-1729091|CRISPRCasFinder
TGCTGTCGCTCCCCATGCGGGAGCGTGGATTGA	AACGGAAAAATGGACCAAGAAGCGCGGGGCCGTTA
CGGCGTCGCTCCCCATGCGGGAGCGTGGATTGA	AACGTTATTCCAGCGCGGCTAATTGCGCTTCGAGTT
CGGCGTCGCTCCCCATGCGGGAGCGTGGATTGA	TACTCCGCCACCAGCGCATCTAGTTCCCGACC
CGGCGTCGCTCCCCATGCGGGAGCGTGCATTGA

>NZ_CP013653|8|7|1728857-1729094|CRT
TGCTGTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	GGAAAAATGGACCAAGAAGCGCGGGGCCGTTA
CGGCGTCGCTCCCCATGCGGGAGCGTGGATTGAAAC	GTTATTCCAGCGCGGCTAATTGCGCTTCGAGTT
CGGCGTCGCTCCCCATGCGGGAGCGTGGATTGATAC	TCCGCCACCAGCGCATCTAGTTCCCGACC
CGGCGTCGCTCCCCATGCGGGAGCGTGCATTGAAAC

>NZ_CP013653|8|6|1728861-1729094|PILER-CR
GTCGCTCCCCATGCGGGAGCGTGGATTGAAACGGAA	AAATGGACCAAGAAGCGCGGGGCCGTTACGGC
GTCGCTCCCCATGCGGGAGCGTGGATTGAAACGTTA	TTCCAGCGCGGCTAATTGCGCTTCGAGTTCGGC
GTCGCTCCCCATGCGGGAGCGTGGATTGATACTCCG	CCACCAGCGCATCTAGTTCCCGACCCGGCGTC
GCTCCCCATGCGGGAGCGTGCATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013653.1\|WP_062491838.1\|1728377_1728668_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP013653.1\|WP_062491854.1\|1737255_1737753_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062491853.1\|1736523_1736853_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062491830.1\|1723247_1723967_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NZ_CP013653.1\|WP_062491836.1\|1727337_1728369_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP013653.1\|WP_062491828.1\|1720784_1723211_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP013653.1\|WP_160327777.1\|1720109_1720271_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062491842.1\|1732511_1732754_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NZ_CP013653.1\|WP_062491824.1\|1717205_1718957_+\|DUF2399-domain-containing-protein	unknown	unknown	gnl\|CDD\|370606
NZ_CP013653.1\|WP_062491846.1\|1733454_1733892_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271352
NZ_CP013653.1\|WP_062491832.1\|1723967_1725884_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP013653.1\|WP_062491857.1\|1738072_1738633_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062491834.1\|1725884_1726751_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_CP013653.1\|WP_062491850.1\|1734540_1736385_-\|asparagine-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|273676
NZ_CP013653.1\|WP_062491859.1\|1738822_1739128_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP013653.1\|WP_062491826.1\|1719909_1720113_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_082655552.1\|1729298_1730162_-\|HD-GYP-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NZ_CP013653.1\|WP_062496622.1\|1712871_1717047_+\|TIGR02680-family-protein	unknown	unknown	gnl\|CDD\|274256
NZ_CP013653.1\|WP_062491844.1\|1732883_1733165_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366872
NZ_CP013653.1\|WP_062491840.1\|1730356_1732219_-\|DUF342-domain-containing-protein	unknown	unknown	gnl\|CDD\|377177

Protein	Function_ID	Function_description	E-value
NZ_CP013653.1\|WP_062491838.1\|1728377_1728668_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.19745e-34
NZ_CP013653.1\|WP_062491840.1\|1730356_1732219_-\|DUF342-domain-containing-protein	gnl\|CDD\|377177	pfam03961, FapA, Flagellar Assembly Protein A. Members of this family include FapA (flagellar assembly protein A), found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction.	1.54388e-59
NZ_CP013653.1\|WP_062491836.1\|1727337_1728369_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP013653.1\|WP_062491828.1\|1720784_1723211_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.36855e-64
NZ_CP013653.1\|WP_062491842.1\|1732511_1732754_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	2.34918e-11
NZ_CP013653.1\|WP_062491824.1\|1717205_1718957_+\|DUF2399-domain-containing-protein	gnl\|CDD\|370606	pfam09664, DUF2399, Protein of unknown function C-terminus (DUF2399). Proteins in this entry are encoded within a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Beta-proteobacteria). Just the C-terminal region is ioncluded here.	2.93116e-28
NZ_CP013653.1\|WP_062491846.1\|1733454_1733892_+\|hypothetical-protein	gnl\|CDD\|271352	cd14815, BA_2398_like, Putative Bacillus anthracis lipoprotein and related proteins. Uncharacterized protein family found in Bacilli and Gammaproteobacteria.	1.11666e-13
NZ_CP013653.1\|WP_062491832.1\|1723967_1725884_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	2.16943e-170
NZ_CP013653.1\|WP_062491834.1\|1725884_1726751_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	2.0479e-121
NZ_CP013653.1\|WP_062491850.1\|1734540_1736385_-\|asparagine-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|273676	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff. [Amino acid biosynthesis, Aspartate family].	6.17273e-165
NZ_CP013653.1\|WP_062491859.1\|1738822_1739128_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	5.90655e-08
NZ_CP013653.1\|WP_062496622.1\|1712871_1717047_+\|TIGR02680-family-protein	gnl\|CDD\|274256	TIGR02680, conserved_hypothetical_protein, TIGR02680 family protein. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. [Hypothetical proteins, Conserved].	0
NZ_CP013653.1\|WP_082655552.1\|1729298_1730162_-\|HD-GYP-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	1.34656e-73
NZ_CP013653.1\|WP_062491844.1\|1732883_1733165_-\|hypothetical-protein	gnl\|CDD\|366872	pfam02005, TRM, N2,N2-dimethylguanosine tRNA methyltransferase. This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs. The enzyme is found in both eukaryotes and archaebacteria.	0.00952124
NZ_CP013653.1\|WP_062491830.1\|1723247_1723967_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	5.30456e-96

>NZ_CP013653.1|WP_062491838.1|1728377_1728668_+|CRISPR-associated-endonuclease-Cas2
MLVLITYDVSTTSAEGRRRLTRVAKKCLNYGQRVQNSVFECILDPTQFRRLKYELEALIDKEKDSLRFYNLGENYKAKVEHIGAKSSYDMESPLIL
>NZ_CP013653.1|WP_062491836.1|1727337_1728369_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLFVTMPDTYLARDGENVVIRKDEEVVARYPLHNLEAICTFGYAGVSPALMGACAERRIALTFMTRSGRFLARVIGEDKGNVVLRKEQYRISDDERRSALIARNMIIGKLYNSKWILERAIRDYSLRIDADRIKRVSVSLSETMKLVRGAENLDVLRGLEGTAAVQYNSVFDQLILQQKEHFFFHGRNKRPPLDNVNALLSFTYTLLANEVKAALEAVGLDAYVGFLHRDRPGRASLALDVMEELRSVYADRLALSLINKKLINEKGFHKKENGAVVMDDDTRKIILKSWQERKQEKIVHPYLNEKISWGLVPYAQALLLARTIRGDLDEYPPFLWK
>NZ_CP013653.1|WP_062491834.1|1725884_1726751_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MKALDRKIDFAVVLSVRNANPNGDPLNGNRPRQNYDGHGEISDVCIKRKIRNRLQDMGESILVQSDDRRTDEYRSIKERVDANADVQEFAKGKKQNNELFARAACEAWLDVRCFGQVFAFSGTDVSIGIRGPVSIHTAVSLHPIDITSIQITKSVNAVTPKDPNKRSSDTMGMKHRVDFGVYVFYGSMNPQLAEKTGFTYEDAIKVRNALITLFENDASSARPDGSMEVHRVYWWEHKSKMGQYSSAKVHRSLQLRLREGAEEAKSVDDYSFTVLPLEGLDVQEYAGL
>NZ_CP013653.1|WP_062491832.1|1723967_1725884_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MTWLAQLNKTYENHAHVVGQFEKKWNDREYALIPVSHTTQSAHIEVHLDDRGHFVSANVVDKNEANTIIPCTEASASRTSKPVPHPLFDKLMYVAGDFAKYCEEPKGTPYEDYMAQLSDWCESPAAHPKVKSVYTYLRKGTLVEDLIKYKVLWLDGQGKLADKWTEELENRYGERPEIFKVIASDQSAAFVRFAVHVPGDVEPRLWRDMSVQNSFIQYYEMKLTDYDLCYVSGRELPYADKHASRIRNSADKSKLISANDTDGFTFRGRFRTSREAAAVAYDVSQKAHNALKWLIDKQSFTIDGKVFLVWGTENLNVPDPFADSFTLYDHEDETQGIGDSTHKEFAKRIRMAINGYRYDGDYKSEVIVMVLDAATPGRMSIVYYRDMNKELFLNRLQYWHESCFWLHRYRKDSENRTVSFVGAPAARDIAFAAYGPQANDKVVKGLIERMLPCIIDGRKIPFDIVRSAIHRASNPVGMEEWEWEKTLSIACALVNKTYEKEGFDVSLDTNCQDRSYLFGRMLAIADRLERKALGREEKRATNAIRYMNAFAQRPMRTWTIIQAAIQPYQARMGTDANFYNRLLDEVGSQLQPEHFTDKPLSGLYLLGFYSQRHELSNFKKNNDTVEAMDNEDDEQEEI
>NZ_CP013653.1|WP_062491830.1|1723247_1723967_+|type-I-C-CRISPR-associated-protein-Cas5
MRNQIEFEVYGNYALFTDPLTKIGGEKFSYQIPTYQALKGIVESIYWKPTIIWYIDEVRVMNPIQTESKGIRPIEYNGGNTLAYYTYLKDVRYQVRAHFEFNPHREDLVHDRNEHKHHNISKRALQAGGRRDIFLGTRECQGYVEPCVFGEGAGFYDQTPEIDFGIMVHGINYPDETGRQERETRLWRAKMEYGIIRFIRPEDCTLIRKTGEGTIKPFDTSNIQPVDAMYQELFADGGE
>NZ_CP013653.1|WP_062491828.1|1720784_1723211_+|CRISPR-associated-helicase/endonuclease-Cas3
MDYIAHIREKDGKIQTTTEHSIEVKQACEDTGSKIGLRYLAGLSGWLHDMGKNTLSFKSYIEEAAANPDNPPRRGSVDHSTAGGKLLYDRFHRGAKTSLDKLTAECVANCIISHHQGLRDFLDPQSSSPFLDRVANKELPDYEQAKAVFLRSVGDAEFEQYFAEARKELAEVLERIQKHALPPIVFSLVMKYIFSCLIDADRTNTRQFEEDEAPEAPFDSAAFFNRCYDLLMKKIRGFDRDRNASHPINRLRREMSDQCEAFALERPSGIYTLSIPTGGGKTLASLRYAIKHAIATGKERIVYIVPYTTIIEQNAAEIRDILQEHDLILEHHSNVVEEIGEETEDYDVQKKKIRLARDNWDRPIIFTTMVQFLNTFYAKGTRNIRRMHRLVNSVLIFDEVQSVPLKCISLFNAALNFLHFFGRSSVVLCTATQPALDYVKHHLRLSERPEMIGSLDKVAQRFKRVEIEDRTEPEGWGAERLAEFVGERLEEVRSVLVILNTKTAVRKLFDRLAKDPRIGESGMRLFHLSTNMCAAHRKNVLAEMIAALEAEERVVCVSTQLIEAGVDISFECVIRSLAGLDSIAQAAGRCNRHGKDAIRKVYIVKSADEVLTRLPEMKTGAQITERLLYEFRQSPERFGHELLSAAAMNAYFRYFFHQMKEEMDYPIPQLDYKMFDLLSANKMYYEAYKNKHGRAPEILSRSSFATAERYFEAIGNAAASVLVPYNEDAESLILDLNGELDSQKLGDLLRKAQKYVVNIYDHEMRKLIRNEDVYPLLHGHVLALRKAAYSDLVGVETDGEGEWETAVI
>NZ_CP013653.1|WP_160327777.1|1720109_1720271_+|hypothetical-protein
MKVTHLDYTVVNDVIYPLLFVDQDLLDYFIEEDLAGRIELKFIPRRRKKSVLL
>NZ_CP013653.1|WP_062491826.1|1719909_1720113_+|hypothetical-protein
MERKGTSATRAKNKYNASNYDRLYPYVPKGRKKEYEAAAKKANMSLNEFIIEALEEKVERVQKGEEA
>NZ_CP013653.1|WP_062491824.1|1717205_1718957_+|DUF2399-domain-containing-protein
MNGFQGFNREDRTNGLRADRGERAKAYFSRPGFERPLQAVWDRYASFGKARGNAVVRNATPEECEMVNSFMGWNVKPGGDIRLPLAAFERELLESAFAMTIEELHAVLTGEPLLTKSDRQQLDRQEWEELFRIVKGKLEREEGLLHPVVADWLEQLKAGKADGYRMLRELWRQYAQDAERELANAAAAWNLLLARHLGSEQRLEESSMQSIEPLLGGLRSDDSRLDGSLDRSGPASPSDGLHPIRLPVLAALATGNPHALDRNVPAGRLLFQALRVSARRAVPEPGQDQESEVRCRADRIGQMGLISQVDRTGQAVNAADSAEAAAGSDSDSDFESESAGTPERDSSIEEPEASAIEADSLASREIYRVAGIADDDISTLVHVFIPWESGGLSILSLRQIERMKQVPFAGDLYVVENPAVFSTLIDMTERWLEKGGAFRLSVDGPALLCTSGPASAAALRLLDRYVQEGPRCGTLYYSGDFDVKGIEIGNVLAARYRGQFRPWRFDSQSYAAGSRSSNREGVRFSDEERNRLKQMGAVWDDSLCRAMSGIGRKLFQEEQIAFYMEDWMCALEHAVAGVSDSSK
>NZ_CP013653.1|WP_062496622.1|1712871_1717047_+|TIGR02680-family-protein
MRRADGAQPPDRWQMNRVGILNFWYYDEEEFQLEDGRLILRGANGSGKSVTMQSFLPLVLDGDKRPHRLDPFGSRDRRIEYYLLGEDDDGKGKTDATGYLWMEFRHGRTGAFKTIGIGLRARRNASQVQFWGFVLEDGRRIGRDFWLYDRNRWLEDQVRIPLDRKELEGKIGSGGMVVQDQKSYQDLVNKQIFGFADIEAFQDLLQLMIQLRSPKLSKDFKPSAIYEILHQALPPLMEEELRPLSEVLEDMDQMADRLDEIRRHRGEMVRLQERYDFYNKHILYTKAGELLENHASYKEVAARVKASETALEQAEREKEAAAAERADIQRRLQDIALERELLEKHEAIGKQREYEAAAKALEDTERQLERSRDKAQKARIRQDRLQREQEEAASSRDASERIQRETLDEMEQMAGEMEFAEHAVYHRYWTPNVPEDDAWKDAWRRDIRRHRERVELALVKAAEEREAASMVKEREIELGEASRVRDEAERERAEREKRLEEAKERLKDAIVVWRDGLKELEFGDEAIRETFGAIRNYGPEQPSLELVRAPLLQRYAVGRDALVERRLGFERRRDELLEQKRRLEEEKRSWEESREPEPPRSEARENFRRGKARVGAPLYALCDFRKQVGEEERARIEEALERAGLLDAWISPDGWLEDCGSGDEEAWIVPKPIEFGYTLADLLVADPPEESGVTAEMVDAVLRSFLWDEGSALQDGADWHGIIAADGSYRLGPLAGRSRVKVRAEYIGRETRKRTRMFEIARLAEAIAAVEAELHEVQLSIDGQREAESRLAEERDRFPDGTELTDGLRALQEAGYRLEAALRHEERALERFKAKSEEWRELQRQLHEMTAGWSRLKREKELAEAASVIREYEGALSELHSLWRQYRDASAAWERLRDELETTALELEDEEAQMDELDERRRDQRAQTETLRKLIEELGLADVARRLEEIRAEQTALVQRNREQERLLDAAKDKAARAEAQLALLSEQAEGRKLGLDRATVQLWTELRRGLVPEWREELREEWPGDERNDAEPFAVQPPEGDAACQLAREIRRRYEPLFAGRNAENITNRLLEQFTAARMMLTEYVLQTTDDETTGRILVHSMRDPHRPLPPQTLLDELAEQEAEQSALLSEKDRELYEEIILRSVGKAIRQRIHRAEQWVREMNKLMEERDTSSGLRLRLEWEPKPASGEQQLDVYDLVEMLKRDSHRLREDEIDAMIEHFRAQIAGAKQSAEEEQESLRQHLYRALDYRNWFYFELKYKKGEQTGYRPLTDARFNVLSGGEKAMAMYIPLFAATWSRYSDARSDAPRLISLDEAFAGVDEENMRDMFKLLTDMGFDYMMTSQVLWGCFDTVPKLAIYEIYRPKDVDFVTLFRYRWNGKRREYVENVRTE
>NZ_CP013653.1|WP_082655552.1|1729298_1730162_-|HD-GYP-domain-containing-protein
MMEETISEARMIYEKIHNYKEQLSNSQIQSLIMPNILELCANHRFSNMILELRKKDNYTYRHCVGVAVISFLMGKWLGLKEAELRDLAIAGLMHDIGKIKIPDSILNKASRLSADEYAVMKLHTHFGYEMIRHLPEMTEQQALVALQHHEREDGSGYPFGISGEDIAPFSKIVAVADVFHTMISERVYKKPAPLYQVYREIYQRASGLFDPLVVQSFISNVMNRMIGNSVLLSNGQIARITMLHPDDLINPLVVVQGQYYDLRQSDIYIVDFIPNLRKPNRKDLNLR
>NZ_CP013653.1|WP_062491840.1|1730356_1732219_-|DUF342-domain-containing-protein
MSEYISEQDILKLLKKLDQDARSLDQRLNSAATFNSPAIHAEHEVTNGFIKIEDGKIIVGNPSNGGEFPTLRAIPPVKLFVDGKEVKKETKVSSESAIEWKIEEKPLFEISISEDKLEAYLTVNRTQRYAWSIKDHPPVLHGVLRAEEDPSIILETLSLQDVLSKLENMNIKANLDVAAIQAEILQPSHRKVRIARGKPPVQGHDAQLELYFSESIENVFTEINGVVDFRNHLNIPSVKRGDVIAKKIPPVEGQAGYDVFGNAILPKPVKDILIAGKNDVEITPDSMVIAKKAGRPRVTGNKIKYFDISTAFIVPGNVDLETGNIVFSGDVVVYGDVMDNMIIECLGNIYVAGSVFNSTLTATGSIAVQGNVIGSNLYSGYFGVLYNRFYHSSKQLLEILEKIIESEKLLMKEISKKNMQVRYGQVILLIIESKYQQVWGIVKELLGVIASLQSHNSDKDHLQQIKTYLELFLQPTILIQTITAPKLEDFMRILREAYMKVALSQERHVQISISQSQNSTLKSNGDILIKKEGIIQCELYSAGNIIFFLDNSVCRGSKLEAGDTISAMYVGGLTGVGTSLKAGRKVIVKKMFEGRVTVDRYSVDIFEPIEDKTFSRNSFI
>NZ_CP013653.1|WP_062491842.1|1732511_1732754_+|helix-turn-helix-transcriptional-regulator
MAIELSFAKVLKSVRIKRKMSQEELAFRSDLDRTYISMLERGIHQPTIASLFALSKALNMKPSDMIRLVEIEIGEVDDRE
>NZ_CP013653.1|WP_062491844.1|1732883_1733165_-|hypothetical-protein
MNQIGPEWIKPAFDQRFNERARQAGRQMEIERLQNRQRKLEKMLKNQLSEAQYELFLEWEEILNYRSTLEKEWLYFAGLKDGMQLLKELNNLS
>NZ_CP013653.1|WP_062491846.1|1733454_1733892_+|hypothetical-protein
MERAYKIYLIVFAVVVIAAVAIGTIGINKQKSHIYVMPSGYTGWVEIRYNQEDSPALPREGRAFLHHIPNSGVLSTSSPPTAGGMTFYYVDEQGNRSEIGSDMIHGQAMKGHDIKFSAGTTEQASVNMFFVGTEQQYNDEMKKNP
>NZ_CP013653.1|WP_062491850.1|1734540_1736385_-|asparagine-synthase-(glutamine-hydrolyzing)
MCGITGWIDWTRDLTRQSDILERMTETLAARGPDAAGTWIAGPCALGHRRLAVIDPENGAQPMIRSSEEDAYVIVYNGELYNAAELKRELENRGRRFTTTCDTEVLLVAYMEWGAACLERLNGIFAFAVWDGAREELFLARDRLGVKPLFFSRIDGLFIFGSEPKAILAHPAVSAEIGAEGLAEIFAIGPARTPGHGVYHHLEELRPGRWLKVSREGIAERIYWQLEVRPHEENEEATAERVGELLRDTVERQLVSDVPICTLLSGGLDSSALTALAVDYYNRTGQGAVHTFSVDYADNDKHFRAHAFQPGADAPWIERMSSHLGTVHHAVTFDTPELAAALRDAVLARDLPGMADVDASLLLFCREIKKEATVALSGEAADEIFGGYPWFHREDALNANTFPWSLASAVRADLLSPDAVAWIRPLDYIRERYEEAIAEVPRLAGENDRERRMREMSYLNITRFMPTLLDRKDRMSMAVGLEVRVPYCDHRLVEYVWNIPWAIKTAGDREKGILRQALRGVLPDDVLYRKKSPYPKTHNPNYLAAVKQLLLDVLDDPSSPLLPLINVKKVRELAESEQAASNTPWFGQLMGGPQLFAYLWQTDLWLRHYNVSIR
>NZ_CP013653.1|WP_062491853.1|1736523_1736853_+|hypothetical-protein
MDNGGGETARKRYYVSVGAGQILEDPTAAPYELVIMANEEELNRLQELFEEISSFDEAQAFHFGSHPFGKATRQEIDGGYSYLIDSIYRLLYECGTDETKRHIESMQLL
>NZ_CP013653.1|WP_062491854.1|1737255_1737753_+|hypothetical-protein
MLGRDARFLPDAPLPFFYFLALFALAYPAAGRLIAKLQDLIRSLQPAVKLPPVPKLLAITPARGGWHPEDEPIEDNAAKVQYFRGEMNQNAKISAIMQFFASIQARQAKTVPKYCIFAGFCIIVIYSGQSSCIFATFSPKQSAGRRGAKGGAPTEGDDLTEGADG
>NZ_CP013653.1|WP_062491857.1|1738072_1738633_+|hypothetical-protein
MRKLAVILIVIIAATISGCASKDDEEFDNLVSQAVKYRDELDLVSAKQLFEKALDIREDSQIRKSVQKLTNEIAEVKKFNDLCDRLLSKRNALDSAMSRQDVRTTAKEIDVLISEIKNYDTNTEYSVSKYVNRMKESLELISLSVSVISVQATQDFDVIEKAQEIKNQIDELIASVQYPDAYKSIK
>NZ_CP013653.1|WP_062491859.1|1738822_1739128_+|helix-turn-helix-domain-containing-protein
MSDRIYVKFYVDAVRSGLVADMGAERFQTLAVIASYMDANGRCFPSQETIAAALGIRRENANKRVKSLLAYKWRGRPVVTAERRRGRTEYTIDTEICFGMF

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Crispr_ID: NZ_CP013653_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013653_9

1734012-1734107

TypeI

Consensus_repeat	Method
AATCCACGCTCCCGCGCGGGGAGCGACA	CRISPRCasFinder

1 spacers

cas2,cas1,cas7,cas8c,cas5

The CRISPR arrays of NZ_CP013653_9

>merge|NZ_CP013653|9|1734012-1734107|CRISPRCasFinder
AATCCACGCTCCCGCGCGGGGAGCGACACTTTCGATATCAGCAAATTGTCCAGCAATGGTATCGTTTCAATCCACGCTCCCGCACGGGGAGCGACA

>NZ_CP013653|9|7|1734012-1734107|CRISPRCasFinder
AATCCACGCTCCCGCGCGGGGAGCGACA	CTTTCGATATCAGCAAATTGTCCAGCAATGGTATCGTTTC
AATCCACGCTCCCGCACGGGGAGCGACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013653.1\|WP_062491838.1\|1728377_1728668_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP013653.1\|WP_062491854.1\|1737255_1737753_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062491853.1\|1736523_1736853_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062491840.1\|1730356_1732219_-\|DUF342-domain-containing-protein	unknown	unknown	gnl\|CDD\|377177
NZ_CP013653.1\|WP_062491836.1\|1727337_1728369_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP013653.1\|WP_062491863.1\|1739340_1740585_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP013653.1\|WP_062491871.1\|1742903_1744205_+\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NZ_CP013653.1\|WP_062491842.1\|1732511_1732754_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NZ_CP013653.1\|WP_062491874.1\|1744504_1745098_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_CP013653.1\|WP_062491859.1\|1738822_1739128_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP013653.1\|WP_062491846.1\|1733454_1733892_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271352
NZ_CP013653.1\|WP_062491832.1\|1723967_1725884_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP013653.1\|WP_062491857.1\|1738072_1738633_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062491834.1\|1725884_1726751_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_CP013653.1\|WP_062491850.1\|1734540_1736385_-\|asparagine-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|273676
NZ_CP013653.1\|WP_062491865.1\|1740899_1741370_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_082655552.1\|1729298_1730162_-\|HD-GYP-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NZ_CP013653.1\|WP_062491868.1\|1741944_1742811_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062491844.1\|1732883_1733165_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366872
NZ_CP013653.1\|WP_062491830.1\|1723247_1723967_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847

Protein	Function_ID	Function_description	E-value
NZ_CP013653.1\|WP_062491838.1\|1728377_1728668_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.19745e-34
NZ_CP013653.1\|WP_062491863.1\|1739340_1740585_-\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	1.06669e-30
NZ_CP013653.1\|WP_062491840.1\|1730356_1732219_-\|DUF342-domain-containing-protein	gnl\|CDD\|377177	pfam03961, FapA, Flagellar Assembly Protein A. Members of this family include FapA (flagellar assembly protein A), found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction.	1.54388e-59
NZ_CP013653.1\|WP_062491836.1\|1727337_1728369_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP013653.1\|WP_062491871.1\|1742903_1744205_+\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	6.19283e-164
NZ_CP013653.1\|WP_062491842.1\|1732511_1732754_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	2.34918e-11
NZ_CP013653.1\|WP_062491874.1\|1744504_1745098_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.66436e-151
NZ_CP013653.1\|WP_062491859.1\|1738822_1739128_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	5.90655e-08
NZ_CP013653.1\|WP_062491846.1\|1733454_1733892_+\|hypothetical-protein	gnl\|CDD\|271352	cd14815, BA_2398_like, Putative Bacillus anthracis lipoprotein and related proteins. Uncharacterized protein family found in Bacilli and Gammaproteobacteria.	1.11666e-13
NZ_CP013653.1\|WP_062491832.1\|1723967_1725884_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	2.16943e-170
NZ_CP013653.1\|WP_062491834.1\|1725884_1726751_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	2.0479e-121
NZ_CP013653.1\|WP_062491850.1\|1734540_1736385_-\|asparagine-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|273676	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff. [Amino acid biosynthesis, Aspartate family].	6.17273e-165
NZ_CP013653.1\|WP_082655552.1\|1729298_1730162_-\|HD-GYP-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	1.34656e-73
NZ_CP013653.1\|WP_062491844.1\|1732883_1733165_-\|hypothetical-protein	gnl\|CDD\|366872	pfam02005, TRM, N2,N2-dimethylguanosine tRNA methyltransferase. This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs. The enzyme is found in both eukaryotes and archaebacteria.	0.00952124
NZ_CP013653.1\|WP_062491830.1\|1723247_1723967_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	5.30456e-96

>NZ_CP013653.1|WP_062491846.1|1733454_1733892_+|hypothetical-protein
MERAYKIYLIVFAVVVIAAVAIGTIGINKQKSHIYVMPSGYTGWVEIRYNQEDSPALPREGRAFLHHIPNSGVLSTSSPPTAGGMTFYYVDEQGNRSEIGSDMIHGQAMKGHDIKFSAGTTEQASVNMFFVGTEQQYNDEMKKNP
>NZ_CP013653.1|WP_062491844.1|1732883_1733165_-|hypothetical-protein
MNQIGPEWIKPAFDQRFNERARQAGRQMEIERLQNRQRKLEKMLKNQLSEAQYELFLEWEEILNYRSTLEKEWLYFAGLKDGMQLLKELNNLS
>NZ_CP013653.1|WP_062491842.1|1732511_1732754_+|helix-turn-helix-transcriptional-regulator
MAIELSFAKVLKSVRIKRKMSQEELAFRSDLDRTYISMLERGIHQPTIASLFALSKALNMKPSDMIRLVEIEIGEVDDRE
>NZ_CP013653.1|WP_062491840.1|1730356_1732219_-|DUF342-domain-containing-protein
MSEYISEQDILKLLKKLDQDARSLDQRLNSAATFNSPAIHAEHEVTNGFIKIEDGKIIVGNPSNGGEFPTLRAIPPVKLFVDGKEVKKETKVSSESAIEWKIEEKPLFEISISEDKLEAYLTVNRTQRYAWSIKDHPPVLHGVLRAEEDPSIILETLSLQDVLSKLENMNIKANLDVAAIQAEILQPSHRKVRIARGKPPVQGHDAQLELYFSESIENVFTEINGVVDFRNHLNIPSVKRGDVIAKKIPPVEGQAGYDVFGNAILPKPVKDILIAGKNDVEITPDSMVIAKKAGRPRVTGNKIKYFDISTAFIVPGNVDLETGNIVFSGDVVVYGDVMDNMIIECLGNIYVAGSVFNSTLTATGSIAVQGNVIGSNLYSGYFGVLYNRFYHSSKQLLEILEKIIESEKLLMKEISKKNMQVRYGQVILLIIESKYQQVWGIVKELLGVIASLQSHNSDKDHLQQIKTYLELFLQPTILIQTITAPKLEDFMRILREAYMKVALSQERHVQISISQSQNSTLKSNGDILIKKEGIIQCELYSAGNIIFFLDNSVCRGSKLEAGDTISAMYVGGLTGVGTSLKAGRKVIVKKMFEGRVTVDRYSVDIFEPIEDKTFSRNSFI
>NZ_CP013653.1|WP_082655552.1|1729298_1730162_-|HD-GYP-domain-containing-protein
MMEETISEARMIYEKIHNYKEQLSNSQIQSLIMPNILELCANHRFSNMILELRKKDNYTYRHCVGVAVISFLMGKWLGLKEAELRDLAIAGLMHDIGKIKIPDSILNKASRLSADEYAVMKLHTHFGYEMIRHLPEMTEQQALVALQHHEREDGSGYPFGISGEDIAPFSKIVAVADVFHTMISERVYKKPAPLYQVYREIYQRASGLFDPLVVQSFISNVMNRMIGNSVLLSNGQIARITMLHPDDLINPLVVVQGQYYDLRQSDIYIVDFIPNLRKPNRKDLNLR
>NZ_CP013653.1|WP_062491838.1|1728377_1728668_+|CRISPR-associated-endonuclease-Cas2
MLVLITYDVSTTSAEGRRRLTRVAKKCLNYGQRVQNSVFECILDPTQFRRLKYELEALIDKEKDSLRFYNLGENYKAKVEHIGAKSSYDMESPLIL
>NZ_CP013653.1|WP_062491836.1|1727337_1728369_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLFVTMPDTYLARDGENVVIRKDEEVVARYPLHNLEAICTFGYAGVSPALMGACAERRIALTFMTRSGRFLARVIGEDKGNVVLRKEQYRISDDERRSALIARNMIIGKLYNSKWILERAIRDYSLRIDADRIKRVSVSLSETMKLVRGAENLDVLRGLEGTAAVQYNSVFDQLILQQKEHFFFHGRNKRPPLDNVNALLSFTYTLLANEVKAALEAVGLDAYVGFLHRDRPGRASLALDVMEELRSVYADRLALSLINKKLINEKGFHKKENGAVVMDDDTRKIILKSWQERKQEKIVHPYLNEKISWGLVPYAQALLLARTIRGDLDEYPPFLWK
>NZ_CP013653.1|WP_062491834.1|1725884_1726751_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MKALDRKIDFAVVLSVRNANPNGDPLNGNRPRQNYDGHGEISDVCIKRKIRNRLQDMGESILVQSDDRRTDEYRSIKERVDANADVQEFAKGKKQNNELFARAACEAWLDVRCFGQVFAFSGTDVSIGIRGPVSIHTAVSLHPIDITSIQITKSVNAVTPKDPNKRSSDTMGMKHRVDFGVYVFYGSMNPQLAEKTGFTYEDAIKVRNALITLFENDASSARPDGSMEVHRVYWWEHKSKMGQYSSAKVHRSLQLRLREGAEEAKSVDDYSFTVLPLEGLDVQEYAGL
>NZ_CP013653.1|WP_062491832.1|1723967_1725884_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MTWLAQLNKTYENHAHVVGQFEKKWNDREYALIPVSHTTQSAHIEVHLDDRGHFVSANVVDKNEANTIIPCTEASASRTSKPVPHPLFDKLMYVAGDFAKYCEEPKGTPYEDYMAQLSDWCESPAAHPKVKSVYTYLRKGTLVEDLIKYKVLWLDGQGKLADKWTEELENRYGERPEIFKVIASDQSAAFVRFAVHVPGDVEPRLWRDMSVQNSFIQYYEMKLTDYDLCYVSGRELPYADKHASRIRNSADKSKLISANDTDGFTFRGRFRTSREAAAVAYDVSQKAHNALKWLIDKQSFTIDGKVFLVWGTENLNVPDPFADSFTLYDHEDETQGIGDSTHKEFAKRIRMAINGYRYDGDYKSEVIVMVLDAATPGRMSIVYYRDMNKELFLNRLQYWHESCFWLHRYRKDSENRTVSFVGAPAARDIAFAAYGPQANDKVVKGLIERMLPCIIDGRKIPFDIVRSAIHRASNPVGMEEWEWEKTLSIACALVNKTYEKEGFDVSLDTNCQDRSYLFGRMLAIADRLERKALGREEKRATNAIRYMNAFAQRPMRTWTIIQAAIQPYQARMGTDANFYNRLLDEVGSQLQPEHFTDKPLSGLYLLGFYSQRHELSNFKKNNDTVEAMDNEDDEQEEI
>NZ_CP013653.1|WP_062491830.1|1723247_1723967_+|type-I-C-CRISPR-associated-protein-Cas5
MRNQIEFEVYGNYALFTDPLTKIGGEKFSYQIPTYQALKGIVESIYWKPTIIWYIDEVRVMNPIQTESKGIRPIEYNGGNTLAYYTYLKDVRYQVRAHFEFNPHREDLVHDRNEHKHHNISKRALQAGGRRDIFLGTRECQGYVEPCVFGEGAGFYDQTPEIDFGIMVHGINYPDETGRQERETRLWRAKMEYGIIRFIRPEDCTLIRKTGEGTIKPFDTSNIQPVDAMYQELFADGGE
>NZ_CP013653.1|WP_062491850.1|1734540_1736385_-|asparagine-synthase-(glutamine-hydrolyzing)
MCGITGWIDWTRDLTRQSDILERMTETLAARGPDAAGTWIAGPCALGHRRLAVIDPENGAQPMIRSSEEDAYVIVYNGELYNAAELKRELENRGRRFTTTCDTEVLLVAYMEWGAACLERLNGIFAFAVWDGAREELFLARDRLGVKPLFFSRIDGLFIFGSEPKAILAHPAVSAEIGAEGLAEIFAIGPARTPGHGVYHHLEELRPGRWLKVSREGIAERIYWQLEVRPHEENEEATAERVGELLRDTVERQLVSDVPICTLLSGGLDSSALTALAVDYYNRTGQGAVHTFSVDYADNDKHFRAHAFQPGADAPWIERMSSHLGTVHHAVTFDTPELAAALRDAVLARDLPGMADVDASLLLFCREIKKEATVALSGEAADEIFGGYPWFHREDALNANTFPWSLASAVRADLLSPDAVAWIRPLDYIRERYEEAIAEVPRLAGENDRERRMREMSYLNITRFMPTLLDRKDRMSMAVGLEVRVPYCDHRLVEYVWNIPWAIKTAGDREKGILRQALRGVLPDDVLYRKKSPYPKTHNPNYLAAVKQLLLDVLDDPSSPLLPLINVKKVRELAESEQAASNTPWFGQLMGGPQLFAYLWQTDLWLRHYNVSIR
>NZ_CP013653.1|WP_062491853.1|1736523_1736853_+|hypothetical-protein
MDNGGGETARKRYYVSVGAGQILEDPTAAPYELVIMANEEELNRLQELFEEISSFDEAQAFHFGSHPFGKATRQEIDGGYSYLIDSIYRLLYECGTDETKRHIESMQLL
>NZ_CP013653.1|WP_062491854.1|1737255_1737753_+|hypothetical-protein
MLGRDARFLPDAPLPFFYFLALFALAYPAAGRLIAKLQDLIRSLQPAVKLPPVPKLLAITPARGGWHPEDEPIEDNAAKVQYFRGEMNQNAKISAIMQFFASIQARQAKTVPKYCIFAGFCIIVIYSGQSSCIFATFSPKQSAGRRGAKGGAPTEGDDLTEGADG
>NZ_CP013653.1|WP_062491857.1|1738072_1738633_+|hypothetical-protein
MRKLAVILIVIIAATISGCASKDDEEFDNLVSQAVKYRDELDLVSAKQLFEKALDIREDSQIRKSVQKLTNEIAEVKKFNDLCDRLLSKRNALDSAMSRQDVRTTAKEIDVLISEIKNYDTNTEYSVSKYVNRMKESLELISLSVSVISVQATQDFDVIEKAQEIKNQIDELIASVQYPDAYKSIK
>NZ_CP013653.1|WP_062491859.1|1738822_1739128_+|helix-turn-helix-domain-containing-protein
MSDRIYVKFYVDAVRSGLVADMGAERFQTLAVIASYMDANGRCFPSQETIAAALGIRRENANKRVKSLLAYKWRGRPVVTAERRRGRTEYTIDTEICFGMF
>NZ_CP013653.1|WP_062491863.1|1739340_1740585_-|IS110-family-transposase
MKLFVGIDVSSEELEACFMDPEGDTLETLKVENNLHGASHLRDRIVAAADKLPASEIHIGLEATSVYSWHPAMYLHEDASLQERKTKVFTINPKLINKFREAYADMDKTDRIDAWIIAERLRFGRLTTTIVMQEQYIALQRLTRMRYHLVHNLTREKQYFLQNLFYKCNAFRSEVDSSVFGHAIMEMLSEKFSLDEIADMEVADLADYLKEKGKNRFPDPEHVARCIQKAARASYRLSKVVEDSIDLVLGTSIQAIRSIQSQLKELDKAIERILAGIPGAQCLRSIPGIDRVYAAGILAEIGDIERFSDQAAVAKYAGLTWRKHQSGGFEAEDTKRIRSGNRFLRYYLVEAANSVKNRDPEFGEYYRKKYNEVPKHQHKRALVLTARKLVRLVDVLLRNGQLYTPGRKVTTAKD
>NZ_CP013653.1|WP_062491865.1|1740899_1741370_-|hypothetical-protein
MRNDPRKGKSIIRGNRAMEAVAPSYSLDEAFDLFYSAKKAEGMRERTLKDYVTHWRYFRAWLGECYPEITTLDQVTNVVLREYVGYMAYDRTKYDGVDNRVLPGFQSFHSSYSMFRIFFLKNFQLICSETMVDVADPHRSPKGKERKSGSREKTAL
>NZ_CP013653.1|WP_062491868.1|1741944_1742811_+|hypothetical-protein
MLDHYQIQLTRLLEAEQYGEAKALLRFLLQVRGEERRNYEEWENLLTWLNMAFPDSETSEEDDDGDEEEKLRQDALNPADHDEAYVRQVLYIMRHHPMMDQQILAIERAVHLRHEDVDREIIEWLEEEDVHPVVQFKALQCLRKRGAQGVLALERLGETIQVEIGDVPLTMNDFPEPVLRVLERVEASVEADDPTLPHFARELWKESLQFLYGTSAYKRLLQDDDETVDCYAAALHLTLLLTVYGSADEEEVRDTYGITGELRFRYEQACRSLRQITDFHSDESGPEP
>NZ_CP013653.1|WP_062491871.1|1742903_1744205_+|trigger-factor
MKATWEKIDKNVVAIDVEVDAEKVAEALDKAFKKVVAKVNVPGFRKGKVPRAIFEARFGVESLYQDAIDIILPDAYADAVKETGVQPVDRPEIDVEQFGKGQAFKFKAKVTVKPEVKLGEYKGLEVPAGNTEVTEEEINAELERLQQRHAELVVVEEDAAQNGDITIIDFEGFVDGEPFEGGKGERYNLELGSGSFIPGFEEQIVGMRTGDYKDVEVTFPENYHAENLAGKPAVFKVKLHEIKRKNLPALDDEFAKDVSEFETLEEFKQDLAAKLKERKEKENEQARETAVVEKAAEAAEIDIPEVMIENETDYMIRDFENRLRMQGMNLELYYQFSGQDEAQLREQMKGDAEKRVRNTLVLEQIAKVENIEVTDEDVQAELEKLAEQYKRPVDELKELFERNGTLDNLKEDLSIRKTVRFLLENSKQTSEVA
>NZ_CP013653.1|WP_062491874.1|1744504_1745098_+|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MNLVPIVVEQTNRGERSYDIYSRLLKDRIIFLGSAIDDDVANSVIAQLLFLAADDPDKDIHLYINSPGGSVTAGLGIYDTMQYIKPDVSTICVGLAASMGSLLLTAGAKGKRFALPNSEVMIHQPLGGVRGQATDIKIHADWILRTKQKLNQIYVERTGQPYEKIDRDTDRDYFMSAEEAMAYGLIDKVIDKPLSAV

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Crispr_ID: NZ_CP013653_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013653_10

1850543-1850654

Orphan

Consensus_repeat	Method
GCCCCGGAGGCCGTCCGCGCCTTCCGTCAAATCGTCGCCCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013653_10

>merge|NZ_CP013653|10|1850543-1850654|CRISPRCasFinder
GCCCCGGAGGCCGTCCGCGCCTTCCGTCAAATCGTCGCCCGTTGGTCGGTGCGCTCCGTCTTTGCTATACGCCCCGGAGGCCGTCCGCGCCTTCCGTCAAATCGTGCCCGTC

>NZ_CP013653|10|8|1850543-1850654|CRISPRCasFinder
GCCCCGGAGGCCGTCCGCGCCTTCCGTCAAATCGTCGCCCGT	TGGTCGGTGCGCTCCGTCTTTGCTATAC
GCCCCGGAGGCCGTCCGCGCCTTCCGTCAAATCGTGCCCGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013653.1\|WP_062492026.1\|1857087_1858773_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|234861
NZ_CP013653.1\|WP_082655141.1\|1861697_1862657_+\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP013653.1\|WP_062496644.1\|1844748_1845879_+\|endolytic-transglycosylase-MltG	unknown	unknown	gnl\|CDD\|376862
NZ_CP013653.1\|WP_062492024.1\|1855562_1856966_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200582
NZ_CP013653.1\|WP_145977335.1\|1846833_1848078_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP013653.1\|WP_062492010.1\|1844341_1844644_+\|DUF1292-domain-containing-protein	unknown	unknown	gnl\|CDD\|377740
NZ_CP013653.1\|WP_062491999.1\|1839174_1840245_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP013653.1\|WP_082655140.1\|1859912_1861076_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP013653.1\|WP_062492032.1\|1862783_1863953_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274414
NZ_CP013653.1\|WP_082655139.1\|1848300_1850460_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP013653.1\|WP_062492003.1\|1840643_1843277_+\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
NZ_CP013653.1\|WP_062492009.1\|1844039_1844345_+\|DUF1292-domain-containing-protein	unknown	unknown	gnl\|CDD\|184235
NZ_CP013653.1\|WP_062492007.1\|1843614_1844031_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|335420
NZ_CP013653.1\|WP_062492028.1\|1859224_1859920_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP013653.1\|WP_062492030.1\|1861115_1861571_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319912
NZ_CP013653.1\|WP_062492016.1\|1851556_1852213_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372652
NZ_CP013653.1\|WP_062492021.1\|1852386_1854201_+\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|274573
NZ_CP013653.1\|WP_062492005.1\|1843331_1843592_+\|IreB-family-regulatory-phosphoprotein	unknown	unknown	gnl\|CDD\|180108
NZ_CP013653.1\|WP_062492023.1\|1854241_1855360_-\|sporulation-integral-membrane-protein-YtvI	unknown	unknown	gnl\|CDD\|274334
NZ_CP013653.1\|WP_062492012.1\|1845868_1846798_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896

Protein	Function_ID	Function_description	E-value
NZ_CP013653.1\|WP_062492026.1\|1857087_1858773_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|234861	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP013653.1\|WP_082655141.1\|1861697_1862657_+\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	1.3344e-89
NZ_CP013653.1\|WP_062496644.1\|1844748_1845879_+\|endolytic-transglycosylase-MltG	gnl\|CDD\|376862	pfam02618, YceG, YceG-like family. This family of proteins is found in bacteria. Proteins in this family are typically between 332 and 389 amino acids in length. This family was previously incorrectly annotated and names as aminodeoxychorismate lyase. The structure of YceG was solved by X-ray crystallography.	2.11761e-129
NZ_CP013653.1\|WP_062492024.1\|1855562_1856966_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|200582	cd10959, CE4_NodB_like_3, Catalytic NodB homology domain of uncharacterized bacterial polysaccharide deacetylases. This family includes many uncharacterized bacterial polysaccharide deacetylases. Although their biological function still remains unknown, members in this family show high sequence homology to the catalytic NodB homology domain of Streptococcus pneumoniae polysaccharide deacetylase PgdA (SpPgdA), which is an extracellular metal-dependent polysaccharide deacetylase with de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. Like SpPgdA, this family is a member of the carbohydrate esterase 4 (CE4) superfamily.	5.6236e-76
NZ_CP013653.1\|WP_145977335.1\|1846833_1848078_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	1.27896e-142
NZ_CP013653.1\|WP_062492010.1\|1844341_1844644_+\|DUF1292-domain-containing-protein	gnl\|CDD\|377740	pfam06949, DUF1292, Protein of unknown function (DUF1292). This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.	8.03968e-07
NZ_CP013653.1\|WP_062491999.1\|1839174_1840245_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	9.09544e-56
NZ_CP013653.1\|WP_082655140.1\|1859912_1861076_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.32128e-50
NZ_CP013653.1\|WP_062492032.1\|1862783_1863953_-\|ABC-transporter-permease	gnl\|CDD\|274414	TIGR03062, hypothetical_protein_lp_1332, YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.	4.59594e-25
NZ_CP013653.1\|WP_082655139.1\|1848300_1850460_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	7.39791e-47
NZ_CP013653.1\|WP_062492003.1\|1840643_1843277_+\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NZ_CP013653.1\|WP_062492009.1\|1844039_1844345_+\|DUF1292-domain-containing-protein	gnl\|CDD\|184235	PRK13678, PRK13678, hypothetical protein; Provisional.	4.16377e-15
NZ_CP013653.1\|WP_062492007.1\|1843614_1844031_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|335420	pfam03652, RuvX, Holliday junction resolvase. This family of nucleases resolves the Holliday junction intermediates in genetic recombination.	2.25532e-63
NZ_CP013653.1\|WP_062492028.1\|1859224_1859920_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.08621e-91
NZ_CP013653.1\|WP_062492030.1\|1861115_1861571_+\|VOC-family-protein	gnl\|CDD\|319912	cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.	3.77967e-33
NZ_CP013653.1\|WP_062492016.1\|1851556_1852213_+\|hypothetical-protein	gnl\|CDD\|372652	pfam13624, SurA_N_3, SurA N-terminal domain. This domain is found at the N-terminus of the chaperone SurA. It is a helical domain of unknown function. The C-terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment.	1.53615e-06
NZ_CP013653.1\|WP_062492021.1\|1852386_1854201_+\|penicillin-binding-protein	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	4.43368e-88
NZ_CP013653.1\|WP_062492005.1\|1843331_1843592_+\|IreB-family-regulatory-phosphoprotein	gnl\|CDD\|180108	PRK05473, IreB-like, IreB family regulatory phosphoprotein. IreB (EF1202) was characterized in Enterococcus faecalis as a small protein, well-conserved in the Firmicutes. It belongs to a system that includes the Ser/Thr protein kinase IreK, and phosphatase IreP, undergoes phosphorylation on threonine residues, and is involved in regulating cephalosporin resistance. This family was previously named DUF965 by Pfam model pfam06135.	1.40993e-50
NZ_CP013653.1\|WP_062492023.1\|1854241_1855360_-\|sporulation-integral-membrane-protein-YtvI	gnl\|CDD\|274334	TIGR02872, UPF0118_membrane_protein_YtvI, sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein. [Cellular processes, Sporulation and germination].	7.26574e-50
NZ_CP013653.1\|WP_062492012.1\|1845868_1846798_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	9.82789e-90

>NZ_CP013653.1|WP_082655139.1|1848300_1850460_+|methyl-accepting-chemotaxis-protein
MKRSKSPKTDKPVDKGNTSQQIGEKAKKRIGMFRIADLKGALSFNPAKSVGTRLFLVIFTSILACVLIVGLLSYSISKSTIESQAKQSGYQTIQQTAEKLDLMIKNYEELTMQVIVDSVIQERIAQYSKTGISQYERFEASRSLNERLQSFTMSNRGVQGSYLIPIKQAGDQGILGSSSLSWESVTSTDWYKAALEQNGRTVWIPTQPKSLGGSGSATFGVARLLKNTLNNDAQYVFVLEISLKEFQNQFENVHLGNGSRIVLLDQNNNYLTNADETLIGQPSDVQLPVGENAKASGTLEATSAGGKVLAIYQTLESPGWRLLGTIPVAELVKSAGYIRNVTAVVSILAAMLAAGIGIFVLYTVAVPLSNIRNLMNEGERGNLSVRSKLKRKDEIGQLSQSFNQMMEKITELVQQTNVTAQDVLHTAGELSEASKKTALAAKEIAVATEEIAGGATSLAMEAERGTDLTLNINTQMKRVLDAKTQMSAAAGEVEQASERGTTHMSMLIEKTGAAEEMTRNMVEKVDRLKESTRSIRKILDVLNNITKQTNILSLNATIEAARAGAAGKGFMVVADEIRKLADQSRQSIDVVAQMTETIQHEIDETVTALSDAYPIFQQQIESVKETSQIFHTVQGQMNLFVHSLHSVTESIGELDQSQSVLSEAMSNVSAVAQQSSATSEEVASLGNEQLHVSEELVKLSDKLENASRQLKESLSKFSI
>NZ_CP013653.1|WP_145977335.1|1846833_1848078_+|U32-family-peptidase
MTKPLPKGKRHRLDKPELLAPAGSLEKLKFAVHYGADAVYIGGQKYGLRSNADNFSLEEMREGVEFARRYGAKVFVATNIYAHNEDIEGLGEYLCGLRDVGVAAIIAADPVVIETAQRLTPELEVHLSTQQSTMNWRAVQFWKEQGLPRVVLARETSFEDIAEIKAHVDIELEVFVHGAMCSSYSGRCVLSNHFTDRDSNRGGCCQSCRWKYELQREGAPALEEAGDAFTMGSKDLCMIEHLPQLIELGVDSFKIEGRMKSVHYVASVVNAYRQAIDAYFADPEGYKLKPEWREEIDKAANRPLNTGFFRDEPGAEAHIYEPEEKKAPYDFAGVVLDYDSATGTAIVQQRNHFRPGQEVEFFGPGGTFFKQTIGEIFSEEGERLDAARHPLQRLRIRTDRPVKPMDMMRKRIGS
>NZ_CP013653.1|WP_062492012.1|1845868_1846798_+|U32-family-peptidase
MRNKPELLATASSLEEMKVLLAAGADAFAIGESRYGLRLPGEFGLPAMAEAVRLAHAHGAKIYAVVNNIMDNRRAEELPAYIRGVAETGADAVVFGDPAVLMAVRSEAPHLKLHWNAEMTSTNYASANYWGRFGATRVVLARELNLEQVKELKARTSLEVQVQVHGMTNIYHSRRELVGSYLDHRGAHRAVPVSADAGLYLTEEERAGEMYPIYEDANGTHMMSADDICMIEDLHELLAAGIDSLRIEGLMKSVAYNETVVRSYRAAIDAYAANPDEYVFREEWLDAIRAVQPPGRELSFGFFYKEQVY
>NZ_CP013653.1|WP_062496644.1|1844748_1845879_+|endolytic-transglycosylase-MltG
MKGTDGYPSDTSLGPKKGRITFWVIVVIILLLLAGCGAVALYVWNGLRPAPEGEAKRVEIERGMTAFQVADMLERQGIIRNSFLFKYYLRYKDEGNKFQAGIYELHPGMTNDEIVAKLNAGETVKPETIRFTVPEGYSILQMAEKLDKEKLADKEEFLRLVDDPKLPADSSVLQSIPKDGKLRYRLEGYLFPETYEFPKDSTLNDMIVRMVSELERKLNELPEGWEEKMAARGLNFHQLMTVASLVEREVVVDEERALVAGVIYNRLAKGMLLQIDATVQYALGEQKERLLYKDLEIDDPYNTYKYEGLPPGPIASPSLASIEAALYPAKSDYLFYVTKKDGSGEHLFARTFEEHERNIEESNRTAKRNGGGEGAQ
>NZ_CP013653.1|WP_062492010.1|1844341_1844644_+|DUF1292-domain-containing-protein
MNGIQPVRVRLLASKYGEEVELLSEGGQPETYRIMAEFELGGQVYAALQSPAMRKENEVEMFRVVVDGEEPELESIEDDEEWEAAAEAYDDLLFQETERS
>NZ_CP013653.1|WP_062492009.1|1844039_1844345_+|DUF1292-domain-containing-protein
MTKDDMQFDEPEIIYIPDEDGNEEEFEVIMKFEVDGSDKKYMMVVPIGDGDEDAEEDEVYAFRYEEDGDDLKLYTIEDEEEWNMVEETFNTLLSELEDDNG
>NZ_CP013653.1|WP_062492007.1|1843614_1844031_+|Holliday-junction-resolvase-RuvX
MKWMGLDYGDRNIGVAVSDAFGWTAQGVTVVERRRDGSEFERIAELVREHEIGEVVVGLPKNMNGTVGPRGEICIAFAEQLRQKLKLPVHLWDERLTTVAAERTLLEADISRKKRKRVVDKMAAALILQNFLDSKTKR
>NZ_CP013653.1|WP_062492005.1|1843331_1843592_+|IreB-family-regulatory-phosphoprotein
MSSMDKTMKFDVKAEGIEISSQEILLKVYDALLEKEYNPINQIVGYLLSGDPAYIPRHNNARSLIRKKERDELIEELVRSYLSRHR
>NZ_CP013653.1|WP_062492003.1|1840643_1843277_+|alanine--tRNA-ligase
MKASEIRSKWLEFFASKGHAIEPSASLVPNNDPSLLWINAGMAPLKVYFDGREIPANPRIANSQKCIRTNDIENVGKTRRHHTFFEMLGNFSIGDYFKKEAIEWAWEFLTSPRWIGFDPERLSVTVYPEDEEAYDYWRNMIGLPDERIIKLEDNFWDIGEGPCGPCTEIFYDRGDQYGDLSDPECYPGGENERFLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASILQGVDSNFDTDLFLPIIERTCKIAGVTYKEDADADVALKVIADHIRTVTFAVGDGVLPSNEGRGYVIRRLLRRAVRYGKKLGIDRPFLYELVETVGGIMGVYYPEVVEKRAFIERVIRMEEEQFHRTLSDGLGLLAGLVADAKAEGRKVIGGEDAFRLYDTYGFPLDLTEDYAGEHGLTVDREGFEAAMEEQRKRARDARTETGGMNTQGGPLADFTVKSEFVGYNELVTEARVTAIVKDDSMVDIAGPGSRVLVLLDRTPFYAESGGQVGDKGTIAGEGFELNVEDVTKAPHGQPVHRAVVVSGTIRKGDVVRAAVAEELRADIVKNHTATHLLHKALKEVLGEHVNQAGSLVEPERLRFDFSHFGAVTAEEMAEIERRVNRQIWLGTEVEISSKPLAEAKAMGAMALFGEKYGDIVRVVRVGDYSLELCGGCHVTNTSQIGLFKLVAESGIGSGVRRIEAVTGRHAYAYVESQLDLLKQSAALLKSNPADVPKRIEALFAQTKELARENESLQAKLSHIEAGSLESKAKRAGDVTVLAARVSAPSMDALRSIADELKAKLGSAVIVLGAVQDDKVQLVAAVSPDLVQKGFHAGKLIKEAAARCGGGGGGRPDMAQAGGKDASKLEEALKLAEELVLKQANVI
>NZ_CP013653.1|WP_062491999.1|1839174_1840245_+|AI-2E-family-transporter
MERFTNSRLFAGLVYVILGLAALYLLLQLKPLIVNVYNFLKAVLAPFLIAMIISYVLNPIVSILNDRKMPRTIAVLLIYAVFGFAIAVVLVNLIPMVLEQLEELNRHVPELTVRAQDIVSDLNNSSLLPESVRTGINNSLYQMEKRLSAAIFDFVNNIGAMLNALFIAFIIPFLAFYILKDFEVFERTVIAFVPKSHRKGAVRLLKDIDSALGSYIRGQFFVCVIVGTLAYIGYLLIGMPYALLLAGIVAITNIIPYLGPFFGAAPALIVASTLSVKMVLLVVVVNTVCQILEGNVVSPQVVGRTLHMHPLTIIFALLVGGEIAGIVGMILAVPIFAALKVIFQHIFAYYVRRNMV
>NZ_CP013653.1|WP_062492016.1|1851556_1852213_+|hypothetical-protein
MKKKFLPIMIGLGVLVGSASVIYSQSSVSPSLADKIKAGFDAIQASLNEQKAKTDAPLLVEGEGIRIDAERFIFYKKNLELIHSLQKGPMLTDSQIIDEIIKKELSVQYAKKLGFKVSPQEIDEVVRFERESLKNADSDSDFVKELMKNRIRITGMTEDEFWNSDLVRNHYEESLLIAKLVSHIAEGKINGITNLNEFQNELLASSKNKLKINTAALR
>NZ_CP013653.1|WP_062492021.1|1852386_1854201_+|penicillin-binding-protein
MKRRMGLAALLLALLLFGSVVRLAWLQLVSPAAGIRAAEDWKRGAVAQHQRRLVLDTGRGDFVDRYGRVITGETYQALALFPIRPAARGNERDMAVLADILGVEPAALRRELDGLREAKFWRREGEEVPYPLSERQIRRLSGLTLGGVRVLPYRNRYPASFPAKHAIGYISQHPELVREVYAKELAKGTVKLTDTVGGGGLERSLDRLLRGTGATSVSYFIDGTDRPLRGLGIRVSQSDNPYYPLRVVTTLDLKLQNALEAYADANGLREGAIVVLDAANADVLAMVSRPSFDPWRLDDPAGPELANHAIRAVEPGSVFKLVTAAAALEYGVADENHEQFECDGEYGKYGLSCWKPGGHGLLTLREGLAQSCNIVFATLAERLTAAQINQTADRLGIGRQIGWSREEASGPLGALRLLEEEEAGTVFAGGRVPSVRDGGLLVQTGIGQRDVRVTPLQAANLVVTLLNGGRVMEPRLVSEIRYANGQRMAALAPREGASRYGRVSPAVTGALLRGMEAVVARGTGQSIREGAWAVAGKSGTAETSAAVARNHQWFAGYGPVQSPRYAVAVLAANRPPDSANRATALFRGVMDVIAAHEKAGKASR
>NZ_CP013653.1|WP_062492023.1|1854241_1855360_-|sporulation-integral-membrane-protein-YtvI
MLNFYQKYWRTAFDIALIALTVFLIMFVFSYLYKIAAPVFLSFLIYLFIEPPARWLAKLGLSKSIAAGISVLLFTIVILGLFFGAGYMVVSQINGLVANLPEYQRFLSEQIASNSAYLQEKLGTLPPEALNQINDFLDQATKWGQNVATDFLHRLGGYLSSVSTFVFNFALGIVLAYFLSIEINSWKKLASEKTPRTFKNAFFFLRDNVFRGIGAYLKAQFKLISITFIVVFAALMLLGVKNALSISLLAAVFDILPLLGVGTIFVPWIIYLFIVGDVSLAIWLTALLLVVVLTRQILEPKITGDTLGVSAFTMLVIMVVSLSLFGVAGVILSPILTILLKALYDQGYLRRWIRLPQGEYDTVQQEPPPNAN
>NZ_CP013653.1|WP_062492024.1|1855562_1856966_+|polysaccharide-deacetylase-family-protein
MENLLLWGFYILTFYAFLPGLVSRTFGFRVFKKGRVEREIALTFDDGPDPVYTPRLLDLLKRYNAKATFFVVGVHAEQNPEILERMHREGHIIGIHNYVHKTNWLMRPKSVRKQIHRTSDIVKKATGERPAYYRPPWGIVNLFDFSNLGYLQIILWSAMFGDWRIRLGADRLTKRMMRKLAPGEVLLLHDCGHTFGADADAPQNMLIALERYLEEGTRRGYRFVAIDEMIRLTDENKARELGPFKRLIVALWLLYEKAFHAVFRLKPVGGENPTFHYRVRTYAGQHVDMGEGRQLKKGDTIVEIHFDNRMLQNIASHGGPPVHTAIRLLREMEKAIPQLLSQIAADPEAENARAMVGVTMIHRGADRFGFQIVKLEKGWFDRMTRLYLRLLMRVLTPKKKGNRKKERGSEAINPHMLVMTMDRVRQMTGRERGGDSSANTQAAPDKLQASDEAMGDAPTVVNSPSAI
>NZ_CP013653.1|WP_062492026.1|1857087_1858773_-|dihydroxy-acid-dehydratase
MASKKMRSDMIKKGFDRAPHRSLLRAAGVKEEDFNKPFIAVCNSYIDIIPGHVHLQEFGKLVKEAIREAGGVPFEFNTIGVDDGIAMGHIGMRYSLASREIIADSVETVVNAHWFDGMVCIPNCDKITPGMMMGALRVNIPTIFVSGGPMKAGKTSDGRSISLSSVFEGVGAYQAGKIDEKGLQELEQYGCPTCGSCSGMFTANSMNCLAEGLGLALPGNGTILAVDPERREFVKRSARQLMKLIEMDIKPRDIVTKEAIDNAFALDMAMGGSTNTVLHTLALAHEAGIDYPIERINEVASRVPHLAKIAPASEYHIEDVHRAGGVSAILNELFKKEGALHGECITVTGKTLRENVAGHEITNHDVIRPIDNPHSERGGLAVLFGNLAPNGAIIKVGAVDPSVGGYMKGEAICFDSQDEALAGIASGKIKEGHVVIIRYEGPKGGPGMPEMLAPTSQIVGMGLGAKVGLVTDGRFSGASRGISIGHVSPEAAEGGPIAFVKDGDLIELDLNNRTMNVLIDDAEMEARRAAWKGFEPKVKKGYLARYSHLVTSASTGGVMKI
>NZ_CP013653.1|WP_062492028.1|1859224_1859920_+|response-regulator-transcription-factor
MNHRVLIVDDEREIAELIEIYLRNEGFETRLAHDGEQALELFERETFHLVVLDIMMPKLDGLEVCRRLRRTQMVPILMLSAKAEDMDKIMGLMTGADDYMVKPFNPLELIARIRSLLRRTYQYSQPAASASEDSSIRIGALRIDKTTHTAEAHGRPLHLTSTEFGILHLLASHPGRVFSAEDIFQQVWKEKYFESNNTVMVHISKLRDKLEQELGDKLIVTVWGVGYKIDG
>NZ_CP013653.1|WP_082655140.1|1859912_1861076_+|HAMP-domain-containing-histidine-kinase
MDRVTVRMMARLLLHLVLSAVLAIVTEFFLFVFGDWATMTFTLLRPLREIARSIMFMFSDQLLFIVLWIMLFVMYLLLLQWRHFRYFSQIGRAVSHIAEGHFDYQIPVKQNNELGQLAANTNWLVTQLKKSLDDERRAEQTKNELITNVSHDLRTPLTSVLGYLGLIEQDRYRDEIELRHYVQIAYEKSKRLNVLINDLFEYTRMRNDAVPILRDPLNLTEMLGELLVQYHVPLQEAGMTGHLHAVEKVVTVKGDAVKLVRVFENLLANAIAYGRDGKRVDVFLKKEEPYAVVEIVNYGEPIPAVDLPNIFDRFYRGDKSRTSRADSGGGSGLGLAIAKEIVEKHGGAIGVASDSTRTAFQVRLPLAPREERQTEQAVPASQQAGKK
>NZ_CP013653.1|WP_062492030.1|1861115_1861571_+|VOC-family-protein
MKTSLLGTKTITQIGILVHDIEKTGQAYAEFFGVEKPQIFVTDAPDIARTEYRGERSEARAKLAFFDMGSLQLELIEPDRNPSTWREHLDKYGEGPHHIAFVVDGMKEKISLMEGRGMPLLQKGEYTGGRYAYLDSSRELKVIIELLENDR
>NZ_CP013653.1|WP_082655141.1|1861697_1862657_+|D-alanyl-D-alanine-carboxypeptidase
MKKWLLVLAAAMAAGLFVMTASLEGRRGNVPEITAKSALLIDAATGNVLFERRADELLPPASMSKMMTEIIVFDQVRKGELQWGDKVTASPYAAAVTGAQIGFGAGETLTVRELFEAMAVHSANDAAVALAEHIAGSEREFVRLMNERAKEIGLSAEARFGNATGLSPSDLAEFAEAAADEETLLTARDTARLARYLLLAYPEILDISRRNAITLTSLPVKLASTNQMLPGMPYAYPGNDGLKTGYTERAGYCFTGTVKQNGRRLIAVVMGTDTEQARFVEAEKLFRYGFDTKPLHLALFRLESRIQFAASALTSMWTA
>NZ_CP013653.1|WP_062492032.1|1862783_1863953_-|ABC-transporter-permease
MKKAVLTYLKKPQTIIAVVVALMAQLIFCMVWMTAYDGVLDRADRLKIAIVNEDGAFGSKIEQQIKSKLPFKVAVLSKEQALDALLQRDVHLVLTIPESFGKSLTAPGTRAKLTYTVNESNPQLSKNVMQTVATQVTEELNRSAVLQGTEIVLQQLKLPSDQASKIAQGLVNKVDAQVESLNPVVGMHNQMVPMMLVLASYVGAMMMAMNIHQASEAIGSALSKRQHLAFRSMIIVVAAAVISFAGSSLIAALGGQMKSGFGSFWLFHFLTLATFMFFAQMFLAVFGMAGMFLNMAVLSLQLVTSGTIVPREMLSSVYQWISYFLPATYSVEGIMNLQFGGVHTGKDAELLLATILFSAAVTVGAILIKKQETPLAKKTASPINEFSVN

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Crispr_ID: NZ_CP013653_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013653_11

2134326-2134424

Orphan

Consensus_repeat	Method
TGCGCAATGTAGCGCGGCCGCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013653_11

>merge|NZ_CP013653|11|2134326-2134424|CRISPRCasFinder
TGCGCAATGTAGCGCGGCCGCCGGGGGCGCGACGCTTTGCGCAATGTAGCGCGGCCGCCGGGGGGCGCGACGCTTTGCGCAATGTAGCGCGGCCCCGGC

>NZ_CP013653|11|9|2134326-2134424|CRISPRCasFinder
TGCGCAATGTAGCGCGGCCGCCGG	GGGCGCGACGCTTTGCGCAATGTAGCGCGGCCGCCGGGGGGCGCGACGCTT
TGCGCAATGTAGCGCGGCCCCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013653.1\|WP_062492374.1\|2142577_2143279_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|163429
NZ_CP013653.1\|WP_062492365.1\|2131565_2132390_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062492358.1\|2121992_2123381_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240539
NZ_CP013653.1\|WP_062492359.1\|2123920_2124802_+\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NZ_CP013653.1\|WP_062492375.1\|2143422_2144091_+\|TerC-family-protein	unknown	unknown	gnl\|CDD\|163429
NZ_CP013653.1\|WP_062492369.1\|2138009_2138510_+\|DUF3907-family-protein	unknown	unknown	gnl\|CDD\|379028
NZ_CP013653.1\|WP_062492364.1\|2130201_2131356_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|236413
NZ_CP013653.1\|WP_062492363.1\|2128334_2130182_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_CP013653.1\|WP_062492362.1\|2127824_2128295_+\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|224585
NZ_CP013653.1\|WP_062492372.1\|2140174_2141341_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
NZ_CP013653.1\|WP_062492360.1\|2124801_2126883_+\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NZ_CP013653.1\|WP_062492366.1\|2132389_2133172_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|378972
NZ_CP013653.1\|WP_062492368.1\|2135903_2137820_-\|peptidase-S8	unknown	unknown	gnl\|CDD\|173810
NZ_CP013653.1\|WP_062492371.1\|2138771_2139152_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062492370.1\|2138565_2138766_+\|DUF1540-domain-containing-protein	unknown	unknown	gnl\|CDD\|377869
NZ_CP013653.1\|WP_062492367.1\|2133138_2134260_+\|Nif3-like-dinuclear-metal-center-hexameric-protein	unknown	unknown	gnl\|CDD\|376614
NZ_CP013653.1\|WP_062492373.1\|2141337_2142555_+\|tRNA-4-thiouridine(8)-synthase-ThiI	unknown	unknown	gnl\|CDD\|234960
NZ_CP013653.1\|WP_148639928.1\|2139347_2140061_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381617
NZ_CP013653.1\|WP_062492376.1\|2144328_2144817_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062492361.1\|2126923_2127742_+\|kinase/pyrophosphorylase	unknown	unknown	gnl\|CDD\|377080

Protein	Function_ID	Function_description	E-value
NZ_CP013653.1\|WP_062492374.1\|2142577_2143279_-\|TerC-family-protein	gnl\|CDD\|163429	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.	9.07044e-78
NZ_CP013653.1\|WP_062492375.1\|2143422_2144091_+\|TerC-family-protein	gnl\|CDD\|163429	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.	1.15977e-61
NZ_CP013653.1\|WP_062492358.1\|2121992_2123381_+\|MATE-family-efflux-transporter	gnl\|CDD\|240539	cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	4.22609e-154
NZ_CP013653.1\|WP_062492367.1\|2133138_2134260_+\|Nif3-like-dinuclear-metal-center-hexameric-protein	gnl\|CDD\|376614	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3). This family contains several NIF3 (NGG1p interacting factor 3) protein homologs. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown.	3.88777e-44
NZ_CP013653.1\|WP_062492369.1\|2138009_2138510_+\|DUF3907-family-protein	gnl\|CDD\|379028	pfam13047, DUF3907, Protein of unknown function (DUF3907). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 160 amino acids in length. There is a conserved AYTG sequence motif.	2.59723e-71
NZ_CP013653.1\|WP_062492364.1\|2130201_2131356_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|236413	PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated.	0
NZ_CP013653.1\|WP_062492363.1\|2128334_2130182_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_CP013653.1\|WP_062492362.1\|2127824_2128295_+\|YaiI/YqxD-family-protein	gnl\|CDD\|224585	COG1671, COG1671, Uncharacterized protein conserved in bacteria [Function unknown].	3.19051e-53
NZ_CP013653.1\|WP_062492372.1\|2140174_2141341_+\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	5.7493e-179
NZ_CP013653.1\|WP_062492360.1\|2124801_2126883_+\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NZ_CP013653.1\|WP_062492366.1\|2132389_2133172_+\|SAM-dependent-methyltransferase	gnl\|CDD\|378972	pfam12847, Methyltransf_18, Methyltransferase domain. Protein in this family function as methyltransferases.	1.45704e-75
NZ_CP013653.1\|WP_062492368.1\|2135903_2137820_-\|peptidase-S8	gnl\|CDD\|173810	cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.	1.27057e-124
NZ_CP013653.1\|WP_062492370.1\|2138565_2138766_+\|DUF1540-domain-containing-protein	gnl\|CDD\|377869	pfam07561, DUF1540, Domain of Unknown Function (DUF1540). This family has four conserved cysteines, which is suggestive of a metal binding function.	1.21804e-06
NZ_CP013653.1\|WP_062492359.1\|2123920_2124802_+\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP013653.1\|WP_062492373.1\|2141337_2142555_+\|tRNA-4-thiouridine(8)-synthase-ThiI	gnl\|CDD\|234960	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional.	0
NZ_CP013653.1\|WP_148639928.1\|2139347_2140061_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381617	cd16896, LT_Slt70-like, uncharacterized lytic transglycosylase subfamily with similarity to Slt70. Uncharacterized lytic transglycosylase (LT) with a conserved sequence pattern suggesting similarity to the Slt70, a 70kda soluble lytic transglycosylase which also has an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	1.3395e-46
NZ_CP013653.1\|WP_062492361.1\|2126923_2127742_+\|kinase/pyrophosphorylase	gnl\|CDD\|377080	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase. This family of regulatory proteins has ADP-dependent kinase and inorganic phosphate-dependent pyrophosphorylase activity.	2.23096e-134

>NZ_CP013653.1|WP_062492367.1|2133138_2134260_+|Nif3-like-dinuclear-metal-center-hexameric-protein
MLAHGQTVVQLMERLAPKHYAVEGDKIGLQLGTLQKEIRKVLVALDVTEEVVDEAISVGANLIVAHHAIIYRPIAKLDTSTPAGRLYEKLIKNDIAVYISHTNLDVAEDGMNDWMADLIGIDTEGRLPLDEVHTDKLYKLVVFVPKDYRDRVLEAVWQAGAGGIGNYSHCSFNLEGTGTFRPLEGADPFIGSTGKLEQVEEVRIETIVPYSVHRAVIQAMLKAHPYEEVAYDLYPLELKGRSFGLGRVGKLSAPTTLGELADKVKKAFDVPFVRVVGDLQRSVSKAAVLGGSGAKYFRQAQFYGADVLVTGDIDYHTAHDALAAGIALIDPGHNAEKIMKAKVADWLARGLAERKSSTEVVASAVDTEPFRFV
>NZ_CP013653.1|WP_062492366.1|2132389_2133172_+|SAM-dependent-methyltransferase
MLKLSKRLQTIADLVAPGARVADIGSDHALLPTYLVQTGRSPSAIAGELNAGPLAAAKKQVKEAGLEAKIDVRQGDGLDVLQAGEADTVTIAGMGGSLMAAILSRGAAAGKLDGVRELVLQPNVGEELVRSWLLDEGWLLTAEEIVEEDGRWYEVLRAVRSSDADALNGKLYDTSFLPSGIGQERGRRLLLRMGPLLLRRGEPLLGAKWAHELEKMEYICRQLSLSETPEAKEKEAGLRRDMDEIKEVLACLPMDKRSCS
>NZ_CP013653.1|WP_062492365.1|2131565_2132390_+|hypothetical-protein
MNEERRKIIVQEIEQWRRGKLLPDQYCDFLLNLYGEPDERPPSHSLGKAAFALQRATGRQWLLGTGLFFLICFVVFYFSAFHPLLQIGLVALAVTVLLRIGHKRRTTNESAGLAVIGTAMLLLLGAGLLLLEMHGLSEWGWKAAFIAGCAALWIVYGLGADIPLLHLCGWVAAVLAYGWVLSRYTDLPAWYEVQLFWLPLSCAFGWSSWFVQRWSKRASSVLFAVCALLWFMPELYAAVYLRDMEWLELQLLVKIAAGGALLYGMRKKWIAWVA
>NZ_CP013653.1|WP_062492364.1|2130201_2131356_+|RNA-polymerase-sigma-factor-RpoD
MANDQHTELETEQKLDLVKEQLIEQGKKRASLSYKEIMEKLSPFDQDPEQIDEFFEQLDDFGIEVTNDSDDDLPMTMGGEDRDRDHDHDHDHEHDEFNFDDDLALPPGIKINDPVRMYLKEIGRVPLLSADDEIELAKRIENGDEEARRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMDLSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFLE
>NZ_CP013653.1|WP_062492363.1|2128334_2130182_+|DNA-primase
MTYARIPESVIAAVLRSHDIVETVGKYVHLTKHGKYMKGLCPFHSEKTPSFTVTPEKQIFHCYGCGKGGDVIRFVAEIEGYSFPEAVKTMAEQAGIPVSWSAPSAGPSPVDSARDKLREAHELAAKFYHYLLLNTAQGREAMAYLRSRGIGEKLIDRFVIGYAPKGWDTLAKFLESRKFDLGLMEKGGLLAAKQDGSGFVDRFRGRIMFPIWSRDGKVIAFGGRILGDGQPKYLNSPETPLFAKSRLLYNFHQARPAIRKSGTVVLFEGYMDVIKAWSAGVANGVATMGTALTPEHAAALRPHADEAIICYDGDAAGQNAVLKTVPLLERAGLRVSVAMLPGGLDPDEFIDKYGPEAFVRETLEHPVSVTKFKLIYLRKNHILLEEEGRKNYVLEAVRTVAELDSMTEREVYLKELSREFDISLDALKQDCNRFRMQLQKKRPAGDNPDNSWNNGRNDRTRPAAAPTLMPAYHQAERRLLYVMMHDASVAQTVHDRVGDGFNAEEHAALAAYIYAYYAQDNEPDVSRFIATLQDDRLQRAASSILMMDGDFPFDEQLLEDYVKEILKVPKLREIERKKEEMVRAERAGDVMLAAQIASEIIALERQLKDRQDDRF
>NZ_CP013653.1|WP_062492362.1|2127824_2128295_+|YaiI/YqxD-family-protein
MKPGKPTIVVDADACPVKAEIARTGKQFGVPVLMVSSYDHLLVPEEGVDIVQVDRHSQAVDLYIVSRVVRGDIVVTQDFGLAAIVLAKGAVALSNRGQIYDDRTIGYLLDRRHEQAKRRRSGGRTKGPRAMTEEDRRHFQQKLTKVLLERQENSEP
>NZ_CP013653.1|WP_062492361.1|2126923_2127742_+|kinase/pyrophosphorylase
MPKNPEVILYIVSDSAGDTGEYVIRAAVAQFHPIYADIRRAPFISDVEVLKRVIEQAAAQQAIVLYTLVIPQLRSAMLSLAEETGIVAIDLLGPLIGSLEEKTGRRARQEPGLNHVLDEDYFRKVEAVEFAVKYDDARDATGVLKADIVLVGVSRTSKTPLSMYLAHKKYKVANVPLIPELKPPEELFTIPREKIVGLTIGVHYLNIIRKERLKALGLPDNAAYATPERIEHELAYAQQVMEKLGCVVIDVSHRAVEETASLIMEAVGRHSS
>NZ_CP013653.1|WP_062492360.1|2124801_2126883_+|glycine--tRNA-ligase-subunit-beta
MAKHLLFEIGLEEVPARFVRGAMNQLKEKLVKWLDDSRIGHGEVSAYATPRRLAVLARDVEEKQADVSEEVKGPSRKIAVDEQGQWSKAALGFARSQGVEPDQLFFKELGGVEYVYVNKSSAGVATDTLLAEGLTGILASMTFPKNMRWGSYELRFVRPIKWIVALYGSDVVPMEVTNVRSGNVTRGHRFLGGEAVIESPDRYLETLRAQHVIADPAEREREIVRQIEALAEEKGWDIAVKEDLLEEVVFLVETPSVLFGTFDPSFLDIPQEVLITSMREHQRYFPVLDKSGRLLPYFVTVRNGDRTSIEQVAKGNEKVLRARLSDAKFFYAEDQKLAIADALSKLETIVYHEELGTLADKVRRIRAIADRLAVRLGLDEAAAGSVSRAADICKFDLVTQMVYEFPELQGIMGEDYARKAGEPEAVARAVFEHYQPRFAGDRTPSSLVGAIVAIADKIDTIVGCFSIGIVPTGSQDPYALRRQATGIVQIILAQQLDVRLDELFEMGLGAHGGKEAKRTAEDIRKDLYDFFALRVKNVLSEQGVRYDVADAVMASGFDDLLLTVQRASALFAAVTGEARDEFKTAVDAFNRVSNLAAKADSRQPDESLFEADAERELYRCWQDVHPGFAQALDAKDAAGALEKLALLKPQINAYFDAVMVMADDEAIRRNRLATLAAIASDISRVADFAKLVW
>NZ_CP013653.1|WP_062492359.1|2123920_2124802_+|glycine--tRNA-ligase-subunit-alpha
MNFQGMILTLQQFWAEQNCLIVQPYDVEKGAGTLNPMTFLRVIGPEPWNVAYVEPSRRPADGRYGENPNRLYQHHQFQVIMKPSPDNIQELYLESLNRLGIDPAHHDIRFVEDNWEHPGLGAWGLGWEVWLDGMEITQFTYFQQVGGIDMNPVAVEITYGMERLASYIQEKENVFELEWVDGVTYGDVFLQPEYEHSKYTFEISDTAKLFTLFNMYEEEARQALEQNLVFPAYDYTLKCSHTFNLLDARGAISVTERTGYISRVRNLARACAATYLQERERLGFPLLKKGEER
>NZ_CP013653.1|WP_062492358.1|2121992_2123381_+|MATE-family-efflux-transporter
MSTTNKRSISIWALTWPIMIEMFLQFMLGTADTLMVSRISDDAVAVTGIANQFFNAIIVLFTLVCSGAGILIAQKLGAGQPADARTIAIMSVTVTAALGVAVSVVLALGTKPIVAALQVPDDIRPLAYTYMAVIGGGMAVTALNLSLSTAVRNTGDTRSPMFISLAMNVIHIALNYAFIFGAFGFPQWGLFGVAVSTVISRLFALVLQIRLFRHAFGERIAFREFAVFDWPLFRQVLRIGWPLGINGGSWTLSQLVIFSIIASMGAQQLAARTYMNTLESFAFTVGWSLALAVQIRISHLYGAKAYKEAYYSAYKALAAGIVIVLANTALLLMFRHAVMRWFTADPWIVDTAVALLWLNLALQPGKMFNMALGQSLSAIGDSKFVMVTALASMWIVSVGLSYALGIHLQWGLYGIYAAMIADEYIRGIWSLVRWRHHRTKLTLAEGFRDADARRQAVVAADL
>NZ_CP013653.1|WP_062492368.1|2135903_2137820_-|peptidase-S8
MQKKWLVGMAVLAVALFLLPFAPWFKGNDQSEERTVPGNETAGSYNRTMSAKQEKERKMAILRSDMEATALLCTTECAKDFRKLLAQGGDGEDKEKHIRRLMADHPHMVYIRWMTGDRSVARGSVPEPVKDSAETHLNKAETSVKSGKKYVSPTIKDGSVRYVVMGIPDERYQGQGIVGLVKQNVVEAVERHQRRNLRLVPYPANGKYRVKTVKPNSTQQKSVRSGEDNGNASHYRVDEVVVRFERDPSPQQMELIKKEISAVSVRKLGYTYLFRSRSMDAERMIAYFRDRWHPRYVEPHYLYLTNEAVGPDPAIPSDEVPIVPNDALYSQYQWNLPTIETEKGWNLSKGSDDVIVAVLDTGVQRDHPDLQGRLVEGINILDESAYPEDDVGHGTHVAGIIAAAVNNGEGVAGMSWYNKIMPVKVLDENGAGSTYSVAEGIIWATDHGAKVINMSLGNYAQADFLHDAVRYAYDRDVVIVAASGNDNTDRPGYPAAYPEVFAVAATDYNGNRASFSNYGDYIDVAAPGASIASTYPGGQYAALSGTSMASPHVSALAALIRSANPELNNEEVMEIMRTSAIDMGDSGKDIYFGYGQIDVRRALEAAGQSTVSLQRFPLRLADRLQRIVDKYAGTPSRP
>NZ_CP013653.1|WP_062492369.1|2138009_2138510_+|DUF3907-family-protein
MSSINVKPLSESTRDKLKEAITALETFLNHYALPQLVNENQGEEEQLYYKGLLSDLRHLLVFSEVTYEKLGIVLRRPQFDSDSAERTLYDVYHQCVNAYFYPKNESYSEDGRYAYTGQEAIRFRYVPSRPAREIVLYLSKIFEELREDLAYYENDYMTQRRMQGQK
>NZ_CP013653.1|WP_062492370.1|2138565_2138766_+|DUF1540-domain-containing-protein
MPKGVLCTVANCTFWGEGNKCNADSILIDLDKHASENYDSEFAKELHQEIAEESSATCCHTFRPKR
>NZ_CP013653.1|WP_062492371.1|2138771_2139152_+|hypothetical-protein
MGEKHRKRKMYEWKRESGFHEKDERDTEFSAELAASPSDLPAKDRDENRKERDDVQSYGVSLGWIALAFAVASWFVWPILLGLTAAVLGFVAYRQGSRALGIWSMTLGLIAACTFLVLIPLYYAFT
>NZ_CP013653.1|WP_148639928.1|2139347_2140061_+|transglycosylase-SLT-domain-containing-protein
MLQLQLSPSTSLLNGSHTATDSYGATGTASLFETLLMQLLSDSYGGFSYAEPNSPSYRTSALDWAPAAAAVWPVSAGYEAMSAEATNADSAPFDHLIEGAAARYGVDPALVRAVIATESNFRPDAVSSAGAKGLMQLMDDTARGLGVADSFDPAQNIDGGTRYLSFLLRKYDGDELVALAAYNAGPGRIDRLGIRTNEQLIAQMHLLPGETRRYIGKVTEAKARYSAGSGMAGPHAV
>NZ_CP013653.1|WP_062492372.1|2140174_2141341_+|cysteine-desulfurase
MLYFDHCASTPPHKEVIRTLAEVMERHYANPSSLHKPGAEANKLIERAREQAAALFGVKAEEWIFTSGGTESNNLAIKGAARQYRSRGNHLVTTGIEHASVYEAFRQLEREGFRVTYVPAGPGGHVSPERIREACTDDTILVSVMHVNNEVGAVQPIAEIGRWLRSRPKTLFHVDGVQSVGKLPVSLKEWGIDLFSISAHKLQGPKGVGLLYVREDVRLDPLFSGGQHERGLRAGTQNVPAIVAAAKALRLAIESQPLRLERMTRLRERLVRQLQAIPELVVNGDASSGEMAPHIVHFSYPGMKPEVIVHMLEQNGVVVSTKSACSSKDDRPSRVLLAMGLPHDRAASGVRISFGDEHTEQDIDKLAAIIRTTVDTLKPLERKGGGQA
>NZ_CP013653.1|WP_062492373.1|2141337_2142555_+|tRNA-4-thiouridine(8)-synthase-ThiI
MIYDRIILRLGEITVKGRNRGRFEKRLLEQVVEALKSFPRAKATATYGRIYVELNGEAYEPIRDRLKDVFGLSSFSPAKRADSELESIRDAALAIMRSYPDVPRTFKVTVKRAWKQFPHTSHEMNHLVGAHVLRATPNLKVDVHRPDVELHVDIQPEGTYLYCEAVPGAGGFPYGTNGKAILLLSGGIDSPVAGWMAMRKGLELEAVHFHSYPFTSEQAKDKVVELARRLAYYGGGSLKLHLVPFTDIQTALVRFNKEHLLITLMRRAMLRIAERIADRRKAGAIVTGDSLGQVASQTLGSMNVIGRTTSLPLLRPLVMMDKLEIIRMAERIGTYETSILPYEDCCTLFQPKSPSTNPNLNVVERIESSMPELDGMIAAAVDGTETIAVEYGSGGKVGDLEESWF
>NZ_CP013653.1|WP_062492374.1|2142577_2143279_-|TerC-family-protein
MEWFSLEFFTALLTIVLIDLFLAGDNAIVIGMAARNLPKDQQKKAVIYGTAGAIGIRIIATVLVVQLLNIPWLHLAGGLLLIWIAYKLVLQDDGHGDIKAGNTLWQSVQTIIIADAAMGIDNVIAVAGAAHGDMALVIIGLLISIPVIVWGSTLFIKLIDRFPWIIYIGSGILAYTAAKMITHEPVLESFFEPVLIGWSFKIAIIALVILAGMATNNMRRNKAAMQKESRESH
>NZ_CP013653.1|WP_062492375.1|2143422_2144091_+|TerC-family-protein
MDQVLLFAEILLINILLSGDNAIVIAMASSRLPPHQRKQAIWWGTAAAIALRCAMTAVALALLAVPFLQAVGAVLLFAIAVKLLTDAENNKRTGTDIRRAGSLRAAVRTIVAADLIMSLDNVLAIAAIAQGEPVLIVLGIVLTIPVIIWGSHMLTTLLEKVPFLVYAGAGLLGYAAGEMLVRDEGLNRLLLHGSATASEAIPLLSIPLVIVVAMLRIRFASR
>NZ_CP013653.1|WP_062492376.1|2144328_2144817_+|hypothetical-protein
MVKNKYSAGIFILLAGIVILLGKLGVFSFIGSVFWPLFILVPGILLHVLFFGRLLPAVVLIPGGMLCVYALLFLFCTVSGWDNMKYVWPFFILGLAVGLYEFYLFESSRPRFAFTASVALAAVSAAAFALILLWKWGVYLIAIALIAVGAWMMYGRKARSRW

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Crispr_ID: NZ_CP013653_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013653_12

2295182-2295319

Orphan

Consensus_repeat	Method
TGCGAAATCCTGCAAAAGTGCAGGAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP013653_12

>merge|NZ_CP013653|12|2295182-2295319|CRISPRCasFinder
TGCAAAATCCTGCAAAAGTGCAGGAATTTTGGCCGGAATGTCCGAATATGGCGCGGAATCCTGCAAAAATACAGTATTTTTTGGTAGTTTTCGCTTGTCTGGCTTGAACGGGTCAAAAATACTGCATAATCGCAGTAA

>NZ_CP013653|12|10|2295182-2295319|CRISPRCasFinder
TGCAAAATCCTGCAAAAGTGCAGGAA	TTTTGGCCGGAATGTCCGAATATGG
CGCGGAATCCTGCAAAAATACAGTAT	TTTTTGGTAGTTTTCGCTTGTCTGGCTTGAACGGG
TCAAAAATACTGCATAATCGCAGTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013653.1\|WP_062492496.1\|2294044_2294665_+\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_CP013653.1\|WP_062492500.1\|2299376_2299862_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NZ_CP013653.1\|WP_062492492.1\|2283919_2284831_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176112
NZ_CP013653.1\|WP_062492503.1\|2303708_2304461_+\|Stp1/IreP-family-PP2C-type-Ser/Thr-phosphatase	unknown	unknown	gnl\|CDD\|223704
NZ_CP013653.1\|WP_062492494.1\|2287665_2290449_+\|calcium-translocating-P-type-ATPase,-SERCA-type	unknown	unknown	gnl\|CDD\|223550
NZ_CP013653.1\|WP_145977342.1\|2301367_2302549_+\|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB	unknown	unknown	gnl\|CDD\|237857
NZ_CP013653.1\|WP_062492501.1\|2299865_2300813_+\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NZ_CP013653.1\|WP_062492502.1\|2302655_2303702_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|237717
NZ_CP013653.1\|WP_062492495.1\|2290655_2291495_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP013653.1\|WP_062492505.1\|2307620_2308265_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|238244
NZ_CP013653.1\|WP_062492498.1\|2295576_2296845_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl\|CDD\|235513
NZ_CP013653.1\|WP_062496711.1\|2284827_2285673_+\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223686
NZ_CP013653.1\|WP_082655175.1\|2306679_2307618_+\|ribosome-small-subunit-dependent-GTPase-A	unknown	unknown	gnl\|CDD\|234631
NZ_CP013653.1\|WP_005548256.1\|2293768_2294029_+\|DUF370-domain-containing-protein	unknown	unknown	gnl\|CDD\|179823
NZ_CP013653.1\|WP_062492493.1\|2285737_2287489_-\|fibronectin/fibrinogen-binding-protein	unknown	unknown	gnl\|CDD\|336217
NZ_CP013653.1\|WP_062492497.1\|2294685_2294886_+\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NZ_CP013653.1\|WP_062496713.1\|2291509_2293390_+\|bifunctional-homocysteine-S-methyltransferase/methylenetetrahydrofolate-reductase	unknown	unknown	gnl\|CDD\|236321
NZ_CP013653.1\|WP_062492491.1\|2282804_2283731_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP013653.1\|WP_062492499.1\|2296841_2299328_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NZ_CP013653.1\|WP_062492504.1\|2304466_2306683_+\|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase	unknown	unknown	gnl\|CDD\|270916

Protein	Function_ID	Function_description	E-value
NZ_CP013653.1\|WP_062492496.1\|2294044_2294665_+\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	7.03486e-118
NZ_CP013653.1\|WP_062492500.1\|2299376_2299862_+\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	1.73689e-79
NZ_CP013653.1\|WP_062492492.1\|2283919_2284831_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176112	cd08420, PBP2_CysL_like, C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold. CysL, also known as YwfK, is a regular of sulfur metabolism in Bacillus subtilis. Sulfur is required for the synthesis of proteins and essential cofactors in all living organism. Sulfur can be assimilated either from inorganic sources (sulfate and thiosulfate), or from organic sources (sulfate esters, sulfamates, and sulfonates). CysL activates the transcription of the cysJI operon encoding sulfite reductase, which reduces sulfite to sulfide. Both cysL mutant and cysJI mutant are unable to grow using sulfate or sulfite as the sulfur source. Like other LysR-type regulators, CysL also negatively regulates its own transcription. In Escherichia coli, three LysR-type activators are involved in the regulation of sulfur metabolism: CysB, Cbl and MetR. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.20972e-89
NZ_CP013653.1\|WP_062492503.1\|2303708_2304461_+\|Stp1/IreP-family-PP2C-type-Ser/Thr-phosphatase	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	1.13446e-77
NZ_CP013653.1\|WP_062492494.1\|2287665_2290449_+\|calcium-translocating-P-type-ATPase,-SERCA-type	gnl\|CDD\|223550	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NZ_CP013653.1\|WP_145977342.1\|2301367_2302549_+\|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB	gnl\|CDD\|237857	PRK14902, PRK14902, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB.	4.31892e-169
NZ_CP013653.1\|WP_062492501.1\|2299865_2300813_+\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	7.14874e-178
NZ_CP013653.1\|WP_062492502.1\|2302655_2303702_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|237717	PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional.	0
NZ_CP013653.1\|WP_062492495.1\|2290655_2291495_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	1.19678e-144
NZ_CP013653.1\|WP_062492505.1\|2307620_2308265_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|238244	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.	4.18493e-127
NZ_CP013653.1\|WP_062492498.1\|2295576_2296845_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl\|CDD\|235513	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated.	0
NZ_CP013653.1\|WP_062496711.1\|2284827_2285673_+\|PHP-domain-containing-protein	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	2.27675e-50
NZ_CP013653.1\|WP_082655175.1\|2306679_2307618_+\|ribosome-small-subunit-dependent-GTPase-A	gnl\|CDD\|234631	PRK00098, PRK00098, GTPase RsgA; Reviewed.	1.22377e-153
NZ_CP013653.1\|WP_005548256.1\|2293768_2294029_+\|DUF370-domain-containing-protein	gnl\|CDD\|179823	PRK04323, PRK04323, hypothetical protein; Provisional.	2.28631e-52
NZ_CP013653.1\|WP_062492493.1\|2285737_2287489_-\|fibronectin/fibrinogen-binding-protein	gnl\|CDD\|336217	pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA). This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein. Fibronectin binding is considered to be an important virulence factor in streptococcal infections. Fibronectin is a dimeric glycoprotein that is present in a soluble form in plasma and extracellular fluids; it is also present in a fibrillar form on cell surfaces. Both the soluble and cellular forms of fibronectin may be incorporated into the extracellular tissue matrix. While fibronectin has critical roles in eukaryotic cellular processes, such as adhesion, migration and differentiation, it is also a substrate for the attachment of bacteria. The binding of pathogenic Streptococcus pyogenes and Staphylococcus aureus to epithelial cells via fibronectin facilitates their internalisation and systemic spread within the host.	0
NZ_CP013653.1\|WP_062492497.1\|2294685_2294886_+\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	1.20712e-17
NZ_CP013653.1\|WP_062496713.1\|2291509_2293390_+\|bifunctional-homocysteine-S-methyltransferase/methylenetetrahydrofolate-reductase	gnl\|CDD\|236321	PRK08645, PRK08645, bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed.	0
NZ_CP013653.1\|WP_062492491.1\|2282804_2283731_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	1.77992e-15
NZ_CP013653.1\|WP_062492499.1\|2296841_2299328_+\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NZ_CP013653.1\|WP_062492504.1\|2304466_2306683_+\|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	9.16533e-132

>NZ_CP013653.1|WP_062492497.1|2294685_2294886_+|DNA-directed-RNA-polymerase-subunit-omega
MLYPSIDELMKKVESKYSLVVAASRRARMLRDGSKTELQQVKSHKHVGVALEEIYHDVIVIEQPDK
>NZ_CP013653.1|WP_062492496.1|2294044_2294665_+|guanylate-kinase
MKRGLLIVLSGPSGVGKGTVCSVLRRKVPDLVYSVSATTRKPRKGEIDGVNYFFKSREQFQEMIDSDALLEYAEYVGNYYGTPRDFVEKTLESGKDIILEIEVQGALKVKEKFPEGVFIFLMPPSLDELKQRIEGRGTESKDAIDHRMSVAIEEIGLLRHYDYAVTNDDIEAACHRIQCIVVAEHCRRERVMGDFAAMQHASTKKA
>NZ_CP013653.1|WP_005548256.1|2293768_2294029_+|DUF370-domain-containing-protein
MAIKLINIGFGNIVSANRIISIVSPESAPIKRIIQEARDRHMLIDATYGRRTRAVIITDSDHVILSAVQPETVAHRLSTKDDDNDE
>NZ_CP013653.1|WP_062496713.1|2291509_2293390_+|bifunctional-homocysteine-S-methyltransferase/methylenetetrahydrofolate-reductase
MKPDLREALQTRILIGDGAMGTYLYQMGFPVGVSYEEFNTLRPDVIEEVHRRYYEAGARVIETNTFSANPENLARYGLEDETEAINRAGVSVARAAVGADAYVVGAVGSIRAGKRQNIGIPELERSFRRQIGALIDEGVDGILLETFYDLEEMALALRIVRELSGITAICQFAVEETGRTRDGVKLHEAFEQLRDGGADIVGFNCRTGPNGILRAIDRIEAPVSLPLSVYPNAGIPDYVDGKYSYTASPEYFADMARRFADRGARLIGGCCGTTPEHIAAVAASLAGYVPQPPQPGEAEHRGDRQKKAAEIAPTVPPVSQPELHVTKIEEPPLTTLVRKRHTVIVELDPPRDLDIRKFMAGAAALKAARVDAVTMADNSLAVTRMSNLALASLVKERLGLRPLVHIACRDRNLIGTQSHLMGLDALGIDHVLAVTGDPARFGDLPDSSSVYDLTSFEMIRMIKQLNEGIAFSGKPLKQKANFVIGAAFNPNVRNLDKMVKRMERKVETGADYIMTQPVYDAGLIARIAEATQHIKVPIFIGIMPLASGRNAEYLHNEVPGIQLSDEVRRRMAGLEGEAGRAEGVRIAEELIDAALPHFKGIYIMTPFMFYDMAVRLTEYVWKKTER
>NZ_CP013653.1|WP_062492495.1|2290655_2291495_+|diaminopimelate-epimerase
MNFTKMHGLGNDFIVVAGQDKLPDGVAELAVKLCDRHFGIGADGLVYILPSSKADFRMRIINSDGSEAEQCGNAIRCVAKYVYDNGLTDKTEITIETLGAGVQKVRVTAEAGKAALVRVDMGEPILEGLKVPTTVDANPVIAHPIEADGREFRFTAVSMGNPHCVIYVDDAVNFDLGTWGPKLENHPMFPRKINVEFVTVNSRNQADMRVWERGAGPTLACGTGACATVVASVLNGLTDRTVTVSLKGGDLLIEWDERDNHVYMTGPAAEVFRGTWEGL
>NZ_CP013653.1|WP_062492494.1|2287665_2290449_+|calcium-translocating-P-type-ATPase,-SERCA-type
MEQLKWHQLDTDALSDALGSVPDRGLSPKEAEERLKSRGPNELTEGARISPLALLLNQFKDFMVLVLVGATLLSGLLGEYLDAITIIAIIVLNAILGFIQEYRAERSLYALKELSAPTARALRGGEVVTLPARELVPGDVVLLESGDRIPADVRLIEANSCYAEESALTGESVPVAKHAQTLADADLPLGDQRNIGFMGTMVTRGTARGIVIRTGMDTEMGKIADLIQQTEEMETPLQHRLEQLGKVLIAVALGLTVLVVAAGILHGQPVYGMFLAGVSLAVAAIPEGLPAIVTIALALGVQRMIRRKAIVRKLPSVETLGCASVICSDKTGTLTQNKMTVTRMWIGGRQIEVTGEGYEPEGEALEDGDVIDVKHDLTVRRLLQIAALCNNASVSRQETDGKKRKDGGPVAEWVLKGDPTEGALTVLAMKLGVPPKSLESLYAREKEFPFDSERKRMSVVVKHQGGRLVCAKGAPDVLMEQCAYILWDDKVVPFTATLKQKTAEAAEAMAQDALRVLGFAYRDLRPHDECGTESEAESQLVFVGLTGMIDPPRREVRDAIAKCRLAGIRTVMITGDHQSTAEAIAGQLGIIPRNGLAVSGKQLSVMDDEQLDRLVDNIYVYARVSPEHKLRIVKALQRRGHVVAMTGDGVNDAPAIKAADIGIAMGITGTDVSKEASSLVLSDDNFATIVSAIEEGRGIYENIRKFIRYLLASNVGEILTMFLAMMAGLPLPLVPIQILWVNLVTDGLPAMALGVDQPEKDLMRQKPRPAKENIFARRLGWKIISRGVLIGVCTLAAFWITLSGAPDSKTQLVHAQTVAFATLVMAQLIHVFDCRSSRSIFHRNPLQNKYLVFAVLSSLILMLGVLYIDALQPIFKTVPLGFRDWCLVLVAAGIPTFVMGIGSVLGSPGGKKKSAAPKIGGSRPVAR
>NZ_CP013653.1|WP_062492493.1|2285737_2287489_-|fibronectin/fibrinogen-binding-protein
MALDGIVIRAVTHELQSCVGARIHKIQQPGDRELVLHIRGGGTNGKLLISANPTYPRLHWTRQTFVNPLEAPMFCMLLRKHCEGGWIESIRQVGNERIVHFNIRQRDELGDLSLKTIVVELMGRHSNIILLNPATGAIHDGIHHVTPAISSYRVVLPGARYIAPPDQGKTDPLTVDSERSFAACLKPLAENGDMPAERMLVAAFSGFSPLIAREIAHRAGVAPGEPAAPERLWPAFARMLEDIRMHRYEPVIVDAEGGKSVFSAIALTHAEGRRETYASISECLEAYYGDKAERDAVKQRAADLIRFIQNEKAKNEKKIEKLQETLEEAKDADKYRIIGELITAYMHQIRQGDSRAELINYYDEEQRPVVVELDPQLTPSENAQRYFRRYAKHRNSLAVVTGQIERTREEIEYLAALLQQLDTASLADIEEIREELVEQGYIRDRGKRGPKRKKPARPALLCYTSSEGATIYVGKNNTQNEYLTNRLASPGDTWLHTKDIPGSHVVIRGDGFGETTLEEAAMLAAYYSQARESSRVPVDYTLIRHVRKPNGAKPGFVIYDNQKTLFVTPDEQRIRSLPSVIRA
>NZ_CP013653.1|WP_062496711.1|2284827_2285673_+|PHP-domain-containing-protein
MNRADLHIHTTASDGLHAPADIVRMAKEAGLAAIAVTDHDTMAGTEEAVEAGRRFGVEVVPGVEISTSAEGIDVHVLAYYPDWRDDEWLSRLAGLRDTRADRNARMIAKLRGLGIPITLEEVESKAGKLDDPEKTVGRPHMAEVLVDKGIVGSVREAFDRYLAAGAAAYVNPPRIHPFEAVDWIREAGGTSVLAHPGLYGNDALVEEIVKYGVRGIEVFHSDHGEDEENRYAALAERYGLIVTGGSDFHGERESGAFHGPIGGRTVDAAVLRKLNPAARGG
>NZ_CP013653.1|WP_062492492.1|2283919_2284831_+|LysR-family-transcriptional-regulator
MALNFHQLHIFYTVAEKGSFSAAAQALHMTQPAVTMQVQSLEDYFGTKLLRRSTKRIELTEAGRALMPYAKRSIDLIRETDASMSKFTRQLKGRLQLGASLTIGEYILPRLLGPFGQEYPHISISMKVMNTAQIMEEILNHQLNFGLIEAPVNHPDMHMEAVLSDELKLIVANSHPFARRESVTLQEAMECPFVLREQGSGTRLVMEEQLMKMGADPSAMKIVMELGSTGAVKSAVEAGLGVSFVSASSVKHEVALGLIRMVPIEGIQFKRQFYSIYLKSALLPISAVTFLTFLRERDLQQWL
>NZ_CP013653.1|WP_062492491.1|2282804_2283731_-|DMT-family-transporter
MVKQHSRLYTAVLIAALVLIWGVSWPIYKIALNYTPPVLFAGMRTFLGGLMLALVALPRRKQIRLKENAKIYSISALFNVLLFFGLQTIGLTYLPGGLFSVLVYLQPVLVGLLAWLWLGEAMSLPKIAGLLLGFAGVAVISADGLGDNLSATGIVLALLTAVCWAFGAVYLKKDGGKADPLWLVSIQSMTGGAILTAIGSCAESWTSIVWNGYYLSGLLFGVILGVPTAWVIYFILVRSGEASKVATSTFLTPLISVIASTLFLHEPFHALLLVGIVMIVLSIYLVNRKGGRSVSADGLTGTPGRKAV
>NZ_CP013653.1|WP_062492498.1|2295576_2296845_+|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MLKGKTILLGVTGGIAAYKAAILCSRLVQAGADVRVIMTQSATKFITPLTLQTLSRHPVYLDTFDEKDPSVVAHIDLADHADLIIVAPATANIIGKMANGLADDMLSTTLLAATSPIIVAPAMNVHMYEHPAVVANIQTLASRGVRFVEPGTGQLACGYVAKGRLAEPEDIVAAAERLFRQGELLAGRRVLVTAGGTVERLDPVRFLTNDSSGRMGFAIAEAARNMGAEVVLVAGRTEGMPPAGVELVHARSAAEMLDAVVARFDEADIVVKAAAVADYRPAAASDRKIKKSGDTMTLELVKTTDILQELGARKTRQFLVGFAAETGDIEKYAMDKLQRKNCDLVVANNVAAEGAGFNVDTNIVQIYDSSGLVADLPLMSKREAAERIMQLVAERLDGAGGSGANVQPAWKAADADRDGERR
>NZ_CP013653.1|WP_062492499.1|2296841_2299328_+|primosomal-protein-N'
MIAKVIVDVPSRQTDRPFDYEVPEAMAGWIEVGSRVGVPFGGRVVQGFVTALADEADVDLDRLKPVAELLDPVPPLTADLVALAEWMSVKYCCTWTAALQAMIPAALKGRAERYVSLARERGREAEELLPGELLRWLQSRGEVKLDALRQRFPECAAEVKEALRAGVLAERSAIRDRLSIRKVLTVYPPENREAARDALEQLPARAGKQRELLRLLLEKDGPVPLQALLAEAGASAGSVRALADRGIVRIEETEQERDPYAGREFATTPPLPLTEGQQHVYEQIAKAIESGEAGFFLLHGVTGSGKTEVYLQAIRHCLNQGRQAIVLVPEISLTPQMVERFKGRFGDAVAVLHSRLSNGERYDEWRKIREGRVRVAIGARSAIFAPFPRIGLIIMDEEHEASYKQEESPKYHTRDVAIRRARQHGAAVVLGSATPSLETYAAAHRPAGEGRSTALLPMPDRVGGRPLPPVEVVDMREELRSGNRSMFSRRLHDALAERLERGEQAVLLLNRRGYSTFVMCRTCGYTAVCPHCDISLTYHQKTRALRCHYCGHAELAPNRCPSCDGEHIRFFGTGTQRVEEELAKLFPGIRVIRMDVDTTTEKGSHEKWLKQFGNRQADVLLGTQMVAKGLDFPYVTLVGVIAADTSLNLPDFRAGERTFQLLTQVAGRAGRHHLPGEVVVQTYAPEHYAIEAAARHDYDSFVRHELRHRRAMGYPPFCRLILITMSHEELPLLAAESERFAEALRRLAAGAGVLGPLDRPGPAAFDVLGPVASPIARMKDRYRFQCMIKYRGSVDAPALVRQALASFADGPARSRVQFAVDVDPQVIL
>NZ_CP013653.1|WP_062492500.1|2299376_2299862_+|peptide-deformylase
MAIRMIVKVPDPVLREVAKEVTKFNANLHKLLDDMADTMYDAEGVGLAAPQIGILKRVIVVDVGDEETGLIEMVNPEIIEADGEQLGPEGCLSIPNLNGDVRRADRVKVRGQDRHGNPFVVEATGFLARAFQHEVDHLNGILFTDIAERVYDISERDKGGE
>NZ_CP013653.1|WP_062492501.1|2299865_2300813_+|methionyl-tRNA-formyltransferase
MRIVFMGTPEFAVPSLELLVREGYDVAAVVTQPDRPKGRKRTLTPPPVKEVALKHGLPVLQPERIRRPEAVEAIAAYKPDLIVTAAYGQILPVAVLELPRLGCINVHGSLLPKYRGGAPIQRAIMNGERVTGVTIMYMAEGLDTGDMISRVEVPIADDDTSGTLFAKLSVAGAELLGRTLPSIADGTAVAVPQNDAEATYAPNLTRDDERIDWSRSAREIYNQVRGLSPFAGAFTLWNGEPFKVWACAVSDDSADTAAAPGEVVRVTGEGIAVQTGNGVLLLTQIQPAGKRAMPAAEWLKGARLAVGTVFGGGEL
>NZ_CP013653.1|WP_145977342.1|2301367_2302549_+|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB
MVNGVLRSLQRSIAQTASGEGGAAEQTGSAVERTGIAAEQIGSADERTGSAAGQTGGAGGRPEAPIVLAAAAGLADPAERIALRHSYPAWLVRRWIAVFGEAGTEAICAAGNEPPHASVRVNRLRLSPEEALARLTEAGFDARPSDAAAAGIVVRRGGNLADSDGYRAGLWTVQDESSMLVAEVAAPRPGMRALDCCAAPGGKTTHLAELMEDRGEVWANDLHPHKRKLIEDQAGRLGLASVRAITGDAAELDRRFDPASFDVVLLDAPCTGFGVIRRKPDIKWTKSPEDIAAIADLQRRLLETAAALVRPGGTLVYSTCTIEPEENENQIARFLERHPEFAADPAWPERTLAALRRAGAIGGGPFPGMAQILPHHFGSDGFFIARLRRRSDS
>NZ_CP013653.1|WP_062492502.1|2302655_2303702_+|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MKPIIYDYTLERLRDWMKENGEPAFRADQLFDWLYAKRVERFEDMTNLPKGLREKLDDQFRFAALHEITRLESKDGTVKFLFGLHDNHAIETVIMRHNYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLTAGEIVAQVVTAQKMLDRTGERVSSIVIMGSGEPFENYEETMTFLRIMIHEKGLNIGQRHITVSTSGIVPNIYRFADEDTQINLAISIHAPNDELRSKLMPVNRRYPFADVMEACRYYLEKTGRRITFEYALIGNVNDRPEHAQQLAEVLKGMLCHVNLIPVNHVPERKYVRTSRDDIFEFHRILVRNGINATIRREQGHDIAAACGQLRAKHMDSMAR
>NZ_CP013653.1|WP_062492503.1|2303708_2304461_+|Stp1/IreP-family-PP2C-type-Ser/Thr-phosphatase
MRTANRSDTGRIRLVNEDRSWVGETAGGLTVAIVADGMGGHRAGDVASQMTVDAFREAMQKLEGDLTDEEAADHMRQAILRANAIVYEMASRNEQYHNMGTTVVAALLKRNGAVIGHIGDSRAYKLTADGLVRLTEDHTLVNELAKAGQISAEEALNHPRRNVLTRALGTDANVEVDVIRIDTAPGEAILLCSDGLTNMVSESQMLDTLRREDLDLDGQAERLIELALEAGGDDNISVILLKDACTEREG
>NZ_CP013653.1|WP_062492504.1|2304466_2306683_+|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase
MIGQDLGGRYEIISRIGGGGMALVYKAHDILLNRRVAVKVLRSQFVHDEEFIRRFRREAQSAASLSHPNVVSIYDVGQQDDIHYIVMEYIEGHNLNEIIQERAPLQTEEAVRIAQQICDALEHAHQNQIIHRDIKPHNILIGKNGRVKVTDFGIARAVTSATITQAGSVVGSVHYFSPEHAKGVSAGEQSDLYSLGVVLYQMLTGELPFHGESPISVALKHLQETFVEPRVVNPHIPQSVENIILRSMRKNPGERYTSAGEMLRDLETCLQPDRLNEPKLVFDNDAEADMDETRIMPAIGGALRDSQPSSGARPTPAGAGAAGAAGATGTAGAAPVQDEEPDEPSAAAQPKKKWVRPVVTVSVTLVIIALVFWGVRTVLAILDVPEVEVPYVVGQTEDEARKMLQDAGLRVEEPPVKEHRDDVENGIVFDQSKSNMRVKEGALIQLWVSLGPRMEEMPSFAESSYGDAVEALRALGVPEANIKKQEEHSDTDPGTVINQSPAAGEQFDPKKTNVTLTVSKGPATFKMPDLRGKNEEQARSQLQALGLRLTGDEVVYEPSFTVPKGEVMEQYPYAPGAEVTKNAEVTLTVSSGPPKDAIEYTYNVVISPAEVGGTSEVHIVYSDARGENIDWGTKKINNTKTFQVKLVLVPNTEATVTIERDGVFMDSSSITYDEAVSGEHPGTVFIPGFEMSNGFFQDETPPDGEQPENGETDDGERGRDEDRGRGKRDNRDGENGEP
>NZ_CP013653.1|WP_082655175.1|2306679_2307618_+|ribosome-small-subunit-dependent-GTPase-A
MNDRQSRMTGRIVKALSGYYYVQPDRENGSAPASPLQCRARGIFKKKGVSPLVGDKVVYSVTENGEGTVDEILPRTSELIRPPVANVDQAVLVFSVLEPALNLQLLDKFLVHIEHAGIPAVLCLSKQDLAASGEKADAAREAARKVREIYEPIGYEVIGTSARLAEGVEELRDRLTGRLSVFAGQSGVGKSSLLNALVPGLSLETNEISMKLGRGKHTTRHVELIPLGNGSFVADTPGFSQLDFAELGIEDLGRCFPEMRELAAECRFRGCTHVHEPSCAVLAAKAEGAVSESRYEHYVQFLNEMKEKKRRY
>NZ_CP013653.1|WP_062492505.1|2307620_2308265_+|ribulose-phosphate-3-epimerase
MSIIAPSILSADFARLGEEIAEAERAGADWIHIDVMDGHFVPNLTFGPLVVEAVRPYTKLTFDTHLMIEQPERYIPAFAAAGADRITVHAEACVHLHRVVHLIREHGLPAGVALNPATPLSAVEHVLDDIDLVLVMTVNPGFGGQRFIPQTLDKIRSLSAILRQRGLDRIHIEVDGGINADTAPLVREAGANVLVAGNAVFGEKDRAAAIAALR

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Crispr_ID: NZ_CP013653_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013653_13

2622101-2622174

Orphan

Consensus_repeat	Method
AAAAATCCTGCACTTTCGCAGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013653_13

>merge|NZ_CP013653|13|2622101-2622174|CRISPRCasFinder
AAAAATCCTGCACTTTCGCAGTAATTTGAGCCAAAGACATCTGTCAGGGGCAAAAATCCTGCACTTTTGCAGTA

>NZ_CP013653|13|11|2622101-2622174|CRISPRCasFinder
AAAAATCCTGCACTTTCGCAGTA	ATTTGAGCCAAAGACATCTGTCAGGGGC
AAAAATCCTGCACTTTTGCAGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013653.1\|WP_062492770.1\|2619987_2620581_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236608
NZ_CP013653.1\|WP_062492780.1\|2629740_2630607_-\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_CP013653.1\|WP_062492766.1\|2614533_2615202_+\|phosphoribosylanthranilate-isomerase	unknown	unknown	gnl\|CDD\|238237
NZ_CP013653.1\|WP_062492764.1\|2612700_2613750_+\|anthranilate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234682
NZ_CP013653.1\|WP_062492771.1\|2620577_2621192_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379219
NZ_CP013653.1\|WP_062492775.1\|2625840_2626374_+\|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|223795
NZ_CP013653.1\|WP_062492769.1\|2618456_2619548_+\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|235824
NZ_CP013653.1\|WP_062492772.1\|2623027_2624218_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062492778.1\|2628051_2628693_+\|DUF1405-domain-containing-protein	unknown	unknown	gnl\|CDD\|377788
NZ_CP013653.1\|WP_062492776.1\|2626391_2627063_+\|cytochrome-b6	unknown	unknown	gnl\|CDD\|179639
NZ_CP013653.1\|WP_145977348.1\|2621237_2621822_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP013653.1\|WP_062492767.1\|2615198_2616404_+\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NZ_CP013653.1\|WP_062492774.1\|2624817_2625000_+\|IDEAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|235145
NZ_CP013653.1\|WP_062492765.1\|2613739_2614537_+\|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl\|CDD\|234710
NZ_CP013653.1\|WP_062492777.1\|2627081_2627969_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|224209
NZ_CP013653.1\|WP_062496785.1\|2617355_2618453_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235106
NZ_CP013653.1\|WP_062492768.1\|2616390_2617197_+\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|237285
NZ_CP013653.1\|WP_062496789.1\|2625184_2625622_+\|DUF2487-family-protein	unknown	unknown	gnl\|CDD\|378469
NZ_CP013653.1\|WP_062492779.1\|2628818_2629754_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|312918
NZ_CP013653.1\|WP_062492773.1\|2624288_2624795_+\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|223735

Protein	Function_ID	Function_description	E-value
NZ_CP013653.1\|WP_062492770.1\|2619987_2620581_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|236608	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional.	1.46252e-45
NZ_CP013653.1\|WP_062492780.1\|2629740_2630607_-\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	1.26595e-86
NZ_CP013653.1\|WP_062492766.1\|2614533_2615202_+\|phosphoribosylanthranilate-isomerase	gnl\|CDD\|238237	cd00405, PRAI, Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.	4.5678e-70
NZ_CP013653.1\|WP_062492764.1\|2612700_2613750_+\|anthranilate-phosphoribosyltransferase	gnl\|CDD\|234682	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional.	0
NZ_CP013653.1\|WP_062492771.1\|2620577_2621192_+\|hypothetical-protein	gnl\|CDD\|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	0.00730545
NZ_CP013653.1\|WP_062492775.1\|2625840_2626374_+\|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit	gnl\|CDD\|223795	COG0723, QcrA, Rieske Fe-S protein [Energy production and conversion].	3.50275e-24
NZ_CP013653.1\|WP_062492769.1\|2618456_2619548_+\|prephenate-dehydrogenase	gnl\|CDD\|235824	PRK06545, PRK06545, prephenate dehydrogenase; Validated.	4.21963e-128
NZ_CP013653.1\|WP_062492776.1\|2626391_2627063_+\|cytochrome-b6	gnl\|CDD\|179639	PRK03735, PRK03735, cytochrome b6; Provisional.	1.10195e-145
NZ_CP013653.1\|WP_062492778.1\|2628051_2628693_+\|DUF1405-domain-containing-protein	gnl\|CDD\|377788	pfam07187, DUF1405, Protein of unknown function (DUF1405). This family consists of several bacterial and related archaeal protein of around 180 residues in length. The function of this family is unknown.	1.86378e-58
NZ_CP013653.1\|WP_062492777.1\|2627081_2627969_+\|c-type-cytochrome	gnl\|CDD\|224209	COG1290, QcrB, Cytochrome b subunit of the bc complex [Energy production and conversion].	4.43241e-13
NZ_CP013653.1\|WP_145977348.1\|2621237_2621822_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.06786e-53
NZ_CP013653.1\|WP_062492767.1\|2615198_2616404_+\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NZ_CP013653.1\|WP_062492774.1\|2624817_2625000_+\|IDEAL-domain-containing-protein	gnl\|CDD\|235145	PRK03636, PRK03636, hypothetical protein; Provisional.	1.52846e-10
NZ_CP013653.1\|WP_062492765.1\|2613739_2614537_+\|indole-3-glycerol-phosphate-synthase-TrpC	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	4.95299e-140
NZ_CP013653.1\|WP_062496785.1\|2617355_2618453_+\|histidinol-phosphate-transaminase	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
NZ_CP013653.1\|WP_062492768.1\|2616390_2617197_+\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	7.93548e-126
NZ_CP013653.1\|WP_062496789.1\|2625184_2625622_+\|DUF2487-family-protein	gnl\|CDD\|378469	pfam10673, DUF2487, Protein of unknown function (DUF2487). This is a bacterial family of uncharacterized proteins.	1.43042e-05
NZ_CP013653.1\|WP_062492779.1\|2628818_2629754_+\|hypothetical-protein	gnl\|CDD\|312918	pfam09577, Spore_YpjB, Sporulation protein YpjB (SpoYpjB). These proteins are found in the endospore-forming bacteria which include Bacillus species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.	6.096e-11
NZ_CP013653.1\|WP_062492773.1\|2624288_2624795_+\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|223735	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only].	3.42678e-76

>NZ_CP013653.1|WP_145977348.1|2621237_2621822_+|histidine-phosphatase-family-protein
MEVFIGLVRHGQTDWNALGKIQGQTDIPLNAAGVAQARALAERLAQDEWKWEAVVASTLQRAAETARIIAQRLRLPAPASDPRLNERRFGDAEGTTEAERLARWGADWRSADLGQESDGEVRERASAFLADWRRRMPDGKLLVVTHGSFLAQMMAVMNGDLEIRHIGNMSYSILEYQDGKWHSHLHNCTRHLES
>NZ_CP013653.1|WP_062492771.1|2620577_2621192_+|hypothetical-protein
MKCQDVQKTLAFYWDLPNDAPERLMADAHIAGCPDCAEQFRLWEESMLTIRSLGEDDVPDGPGEHVGNAVMARIYSEQAWLRPVQQKSYTFTRKVRRRTAAIVACVTALFACGLLFLAFADLHTADNGQVQQVTGLLETANASADGIGVISAKFYSEIPVASVSDPIVLKVEPEVPEYTYWIALFVFGIVISLLLLGWLSRTRR
>NZ_CP013653.1|WP_062492770.1|2619987_2620581_+|sigma-70-family-RNA-polymerase-sigma-factor
MLDSQIVREIKDGNVQLFAELMKRYQRKIFVFIYRMLKSSHLEMMAEDLCAETFYKAYRSLRSFRELDASFSTWLYTIARNTVLSELRKQKNGTLSLDEAGLSPAAPPEYVPEQSLLRSERASMVRAAINNLPEKQRTALILREYEQMDYQEIATILGQTVSSVKSLLFRARVSVRSQLEPYVVNAPLDEHEGMKTR
>NZ_CP013653.1|WP_062492769.1|2618456_2619548_+|prephenate-dehydrogenase
MTTVTIFGVGLIGGSLALCFKGKPGMKVVGHSVRRSSVEKYVSRGVVDEATTSMREAAEQADFIFLCVPVGELESYLEQIAGFDLKPGCIISDVGSTKASIAACARKLGNRNAVFIGGHPMAGSERTGVEAATSILFENAFYVLTPEPSTPPEALTRLTDLLKHTRAHIVTVDAEKHDEIVGAISHLPHIIAVALVNQIRRYNEQNGLYELLAAGGFRDITRIASSDPALWRDILIHNREVLLRLMRDWNEETGRFIRMLEQADAAGIEEAFRMSGEFRSRLPERRKGMILSIYECYIDVPDHPGIIGRIATELGNRHINLSNLQIIESREEVPGVLRLSFRTQEDLDHAIASLKELGYTARY
>NZ_CP013653.1|WP_062496785.1|2617355_2618453_+|histidinol-phosphate-transaminase
MQPKQNIVHLPVYQPGKPVDDVKRELGLTEVIKLASNENPFGCSEQAKAAMMEEIANASIYPDGASQKLAAAVAGHLGVERDQLIFGAGSDEVILMIARAYLVPGDETIMADETFPQYKHNSEIENARVIEVPLKDGKHDLEAMLAKVTPRTKIIWICNPNNPTGTIVTGEELDSFMKRVPASVLVVLDEAYCEYINAPEYPDSLAMLKEYRNLVLLRTFSKIYGLAALRVGYAIGHPDVIRSVNQVREPFNTTRMGQAAAAAAIADQAFVRSCRERNAEGLAYLCGEFDRMGLSYFPPYGNFVMVDVKLPSQQVFEALLRKGIIARARWTHYPHHIRITVGSREQNEKFIKALEEVLQAAAVLG
>NZ_CP013653.1|WP_062492768.1|2616390_2617197_+|tryptophan-synthase-subunit-alpha
MNRIDAAFARLKEKGGTALIPFLTVGDPDLRTTIEIIKTLEKAGADIVELGVPYSDPLADGPVIQRASERALKHRITLAHCMQAAADARSAGVELPFILFSYYNPVLQFGLDRFFEEVKAKDISGLIIPDLPIEEDGEVRSRAEAAGVHLIPLVAPTSNERIARIAGNARGFVYCVSSLGVTGVRSDFHRDIDQFLASVKQAANVPIAIGFGISTREQVERFSAWCDGVVVGSALVRQIEEAIPQLTSEAEREQGLARIGEFIRELKG
>NZ_CP013653.1|WP_062492767.1|2615198_2616404_+|tryptophan-synthase-subunit-beta
MNRVPDENGRFGRFGGRFVPETLMNALLELEEAYHHYANDPAFKEEVRYLLQKYSGRPTSLYYAERLTRHLGGAKIYLKREDLNHTGAHKINNTIGQAVLAKRMGKTKVIAETGAGQHGVASATVAALLGLECKVFMGEEDMKRQQLNVFRMRLLGAEVVPVLSGTRTLKDACNETLRYWVSHVDDTYYILGSATGPHPYPMIVRDFQRIIGDEAREQILAEAGRLPDFVVAAVGGGSNAIGIFYPFIGDESVRLIGVEAAGKGVDTQEHAATMTKGRPGVFQGSLSYVLQDEFGQVLPAHSISAGLDYPGIGPEHAYLKDSGRAEYVPATDAEALEALQLLSRTEGIIPALESAHAIAHTMKLAPTLGADRIIVVNLSGRGDKDVESIMGYLGGNGHESH
>NZ_CP013653.1|WP_062492766.1|2614533_2615202_+|phosphoribosylanthranilate-isomerase
MNGPVAIKICGLKDAATVRGLDGMPVTHIGLVFAPSKRRVDAETAAELIAAARTIGARDGLPPKTVGVFVDPSMDELRAVLRHAPLDIVQLHGGETPAFCRAVKEELAVGVWKAFAAAGDETERSAATRLQPYEGTVDALLADTAGGGTGRPFDWRLLRLYHKAAKAIGVPLFAAGGLHPDNVGELMRDYAPDGVDVSSGVETDGRKDLAKIRQFVERVTGR
>NZ_CP013653.1|WP_062492765.1|2613739_2614537_+|indole-3-glycerol-phosphate-synthase-TrpC
MFLDRIVATKKKEVEALASRYDAAEWERRIASLPPCRGFERALTSGRKRPVGLIAEVKKASPSKGLIREDFDPVKLAKAYEAAGADCISVLTDREYFQGSDDYLSAVRQSVGLPLLRKDFTIDERQIDEARLIGADAILLIAAILSKPELSALHDRARALGMDVLVEVHDRRELETVLELGKATLIGINNRDLRTFATDLRTTERLISLVPEGIAVISESGISSRDDISYLRGLGAQGVLIGEHFMRQPDVGEAVAELMGPVDAA
>NZ_CP013653.1|WP_062492764.1|2612700_2613750_+|anthranilate-phosphoribosyltransferase
MNDMEKMTMQRALATMMSGTDLTREEAREVMEIIMSGKATSAQIAGIVTALRMKGETVDEIAGFAEVMRSKSNRVATEREGLLDTCGTGGSGIHKFNISTASAIIAAAAGVRVAKHGNRAMSGKAGSADVLEALGVNIALSAEQAARCLDEIGICFMFAQLYHPALKHAAGPRKELGVRTIFNMLGPLTNPAGADRQLLGLYDRSRTETVAGVLRELGLKRAMVVSSHDGLDEISISAPTQISELRDGQLRTYDLTPEQLGLRTYPLGEVLGGDAAVNAAIIRSVFAGEQKGAYRDIVLANAGACIYVGDAAGTLREGVERAKEVIDSGLASAKLQQLIETTGEVAHVS
>NZ_CP013653.1|WP_062492772.1|2623027_2624218_+|hypothetical-protein
MNLAEMLGYADIQQLSRIADVYRCECNGHSKHELIQSILATVGRSDVFEEQIGRLRLEDMRFLSTIIFESRNSFSLEELVAKVQQSRFGIEPDQPESAGEMPAKGRKKRGKPEWKQEPAAAWQSPRETILRFKHQGWLFNGHSGVHRYLFQVPEDLKMRFKESMRRKFAERLVYTGEPPAYRDEQHLLADDIRRFLHYVHHYDVPLTSDGSMYKRSVQQLTELLGVREELPKGGWRFGYGRKFKEYPSRMSLLYDYCYFAKWLDESGPVLALTPAGLERLQSAEREETAKLYRFWIRLYKGAIPNLQALVGWIDSLADRWVTAESLKQVLTPFIKPFYYDSEEAIFEQRIVAMMLHLGLLRVGESEEGEVVLRMTAGGRSAVAGVRVEDGDRIALS
>NZ_CP013653.1|WP_062492773.1|2624288_2624795_+|gamma-carbonic-anhydrase-family-protein
MILPYQGRMPVVPDDVYVAEGAKLIGDVTVGAESSIWFNAVLRGDLAPIRIGSRCNIQDGVIGHVNTGQPLLLDDEISVGHGAIIHGCKIGKGTLIGMGAIVLNGAEIGEYALIGAGSLVTENKKIPSYTLSLGSPAKVVRELTEGDLQRMRKTMESYVVKGKEYRIS
>NZ_CP013653.1|WP_062492774.1|2624817_2625000_+|IDEAL-domain-containing-protein
MDNAKTAYEAILGLAAEMVLDEAVLKFRTERIYRAIDSALVEGDKDTFRRLAEELNALRH
>NZ_CP013653.1|WP_062496789.1|2625184_2625622_+|DUF2487-family-protein
MKFSDISENQWDELSPYLDTCLLPVTGLTGRERPYEATKALERLRDVLDLIEIPFKGRVVTYPACHYGADSPALLEDLCAGAKAAGFRYVVLVTGTFGLALTAPSADLIVAPEPDGKAPDASHVAEAIRRLWSSGSPASNSEAGE
>NZ_CP013653.1|WP_062492775.1|2625840_2626374_+|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit
MSNHEHEESVHRPVKRKEMTRRQFLAYTLGGASAFMAVGPVLPMLRFAVDPILQKKEEGTWVKVVEEAKVTQEPQEFKFKVHQVDGWYESDPEKAAWITRDANGEIYALSPICKHLGCTIGWNTDQKNEYVCPCHDARYSIDGKNLTVAPQPLDEYELKIENGFVYLGPLKPNSRVS
>NZ_CP013653.1|WP_062492776.1|2626391_2627063_+|cytochrome-b6
MFKAIYNWIDERLDITPMWRDVADHEVPEHVNPAHHFSAFVYCFGGLTFFITVIQILSGMFLTMYYVPDIINAYASVDYLQHKVPFGGIVRGMHHWGASLVIVMMFLHTLRVFFTGSYKAPREMNWVVGMLIFFVMLGLGFTGYLLPWDNKAYFATKVGIQIAESVPYIGPYIAELLQGGSIVGAQTLTRFFAIHVFFLPGALLVLLAAHFFTIRKQGISGPL
>NZ_CP013653.1|WP_062492777.1|2627081_2627969_+|c-type-cytochrome
MAHGHNSNEKVVYVGDSRIRKRKHTMIPPDYTAFPGKSEAFIPNFLLKEWMVGCVALVGFLVLTITHPAPLGYPADPNTVGYIPMPDWYFLFLYQFLKYPYASGDYVVLGTIGVPGVAFGALLLAPFLDTGKERRFYRRPIASSLMFVSLIALVYLTKVSWDHYQHQLELTNTVPEHIEREEKAREAALAGKEPPSNKPPAEQEVPIVAADDPAKQIAEKATCLSCHGTDLKGQPGANIPALRGVGDRLSKDELVNVITEGIPPGMPSFKDKLSADEIDQLATWLSKQKAEAAAE
>NZ_CP013653.1|WP_062492778.1|2628051_2628693_+|DUF1405-domain-containing-protein
MPFASLFGRPFLMNRGVLWTLFAVNLLGTIYGYLWYGDQLLFTIDNKPAWMIPFVPDSPTASLFFTLSLLYLLFPPERPSLPGSVLRAVIEGLAAVTSVKYGIWAVVMIFAGAAQGDPLNWQHYMLVVSHLGMAVEALLYARYMQFGRMAAFAATLWLLLNDTVDYTFGVNPWLPKVLDDDMPAIRTFTYGLSLFSMLTVWLAVAVRGRTGKR
>NZ_CP013653.1|WP_062492779.1|2628818_2629754_+|hypothetical-protein
MNKRFGIIVALCLVLAAIGYARNSQALGEEALYGKGQKELRVRFEQAAISLYAAASEGNRQAGYQAAERLDRLMRDARLTAYGTPDGWRSVRESLSAVKHSLESGQPGSSWYAPAARIRLVADVLVRPGRPLWQQYEPVMRDDIARVKKAWNRQTGNAAAAASAAMAQLREHEERVIAAALMQRSPDTVAGAESAIRYMDRLLAQAAEGKGEKSAVAASFDMAEDALALLFHGSEETDNEPAVAIPIVGIPAVWTFWIGAFIVATLAYSAWHRRMREPYIVVARQEEGKPQPIYAKERPRSEKRRKRITPP
>NZ_CP013653.1|WP_062492780.1|2629740_2630607_-|YitT-family-protein
MLRNWGVRLRTIVPILLGTAIYAFGLQFFVIPNQLMEGGVTGIGVLLNYALGWPLSVSTLALNIPLFLIGWRLLGKEQMAYTLMGTVSLSVFLAFWEKLIERGWITPFHTSQDYILAALYAGVTLGAGLGIVFRFGGTTGGTDIIARIASRWRGIGIGQVILALDAVIIGASLLFIPIEKVLYTLVAVFIASKLIDFIQEGAYAAKAFSIITDRGEELAKRISEELDRGVTIMPAIGAYSGQQKQVVYCVVSRHEIRKLKAMIRNIDPRSFVVIAEVHDVLGEGFKEE

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Crispr_ID: NZ_CP013653_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013653_14

3447028-3447101

Orphan

Consensus_repeat	Method
AAAAATCCTGCACTTTCGCAGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013653_14

>merge|NZ_CP013653|14|3447028-3447101|CRISPRCasFinder
AAAAATCCTGCACTTTCGCAGTAATTTGAGCCAAAGACATCTTTCGGGGGCAAAAATCCTGCACTTTTGCAGTA

>NZ_CP013653|14|12|3447028-3447101|CRISPRCasFinder
AAAAATCCTGCACTTTCGCAGTA	ATTTGAGCCAAAGACATCTTTCGGGGGC
AAAAATCCTGCACTTTTGCAGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013653.1\|WP_062493429.1\|3439365_3440424_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226458
NZ_CP013653.1\|WP_062493441.1\|3445186_3445957_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP013653.1\|WP_062493457.1\|3454385_3456137_-\|alpha-glycosidase	unknown	unknown	gnl\|CDD\|200477
NZ_CP013653.1\|WP_145977224.1\|3458733_3459603_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062493435.1\|3442300_3443113_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_CP013653.1\|WP_062493450.1\|3449099_3449939_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226354
NZ_CP013653.1\|WP_082655262.1\|3443746_3444421_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
NZ_CP013653.1\|WP_160327808.1\|3460055_3460535_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226231
NZ_CP013653.1\|WP_062493433.1\|3442001_3442256_-\|DUF2164-domain-containing-protein	unknown	unknown	gnl\|CDD\|378315
NZ_CP013653.1\|WP_062493439.1\|3444417_3444969_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|185369
NZ_CP013653.1\|WP_062493456.1\|3453158_3454184_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP013653.1\|WP_062493431.1\|3440483_3441614_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP013653.1\|WP_062493452.1\|3449935_3451249_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP013653.1\|WP_062493443.1\|3446041_3446641_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NZ_CP013653.1\|WP_062493447.1\|3447408_3449103_-\|alpha-amylase	unknown	unknown	gnl\|CDD\|200455
NZ_CP013653.1\|WP_062496958.1\|3443163_3443610_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379638
NZ_CP013653.1\|WP_062493454.1\|3451357_3452728_-\|maltose-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270304
NZ_CP013653.1\|WP_062493459.1\|3458316_3458649_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062491863.1\|3456605_3457850_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP013653.1\|WP_062493427.1\|3438639_3439209_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705

Protein	Function_ID	Function_description	E-value
NZ_CP013653.1\|WP_062493429.1\|3439365_3440424_+\|hypothetical-protein	gnl\|CDD\|226458	COG3949, COG3949, Uncharacterized membrane protein [Function unknown].	2.74461e-63
NZ_CP013653.1\|WP_062493441.1\|3445186_3445957_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	6.12443e-83
NZ_CP013653.1\|WP_062493457.1\|3454385_3456137_-\|alpha-glycosidase	gnl\|CDD\|200477	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins. Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP013653.1\|WP_062493435.1\|3442300_3443113_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	1.9306e-82
NZ_CP013653.1\|WP_062493450.1\|3449099_3449939_-\|sugar-ABC-transporter-permease	gnl\|CDD\|226354	COG3833, MalG, ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism].	1.16344e-96
NZ_CP013653.1\|WP_082655262.1\|3443746_3444421_-\|HAD-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	2.1814e-41
NZ_CP013653.1\|WP_160327808.1\|3460055_3460535_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	1.87225e-37
NZ_CP013653.1\|WP_062493433.1\|3442001_3442256_-\|DUF2164-domain-containing-protein	gnl\|CDD\|378315	pfam09932, DUF2164, Uncharacterized conserved protein (DUF2164). This domain, found in various hypothetical prokaryotic proteins, has no known function.	2.52643e-23
NZ_CP013653.1\|WP_062493439.1\|3444417_3444969_-\|NUDIX-domain-containing-protein	gnl\|CDD\|185369	PRK15472, PRK15472, nucleoside triphosphatase NudI; Provisional.	7.34039e-09
NZ_CP013653.1\|WP_062493456.1\|3453158_3454184_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.56253e-125
NZ_CP013653.1\|WP_062493431.1\|3440483_3441614_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	7.13894e-66
NZ_CP013653.1\|WP_062493452.1\|3449935_3451249_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.75388e-68
NZ_CP013653.1\|WP_062493443.1\|3446041_3446641_-\|N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	1.30513e-55
NZ_CP013653.1\|WP_062493447.1\|3447408_3449103_-\|alpha-amylase	gnl\|CDD\|200455	cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Chloroflexi, Dictyoglomi, and Fusobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP013653.1\|WP_062496958.1\|3443163_3443610_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|379638	pfam14526, Cass2, Integron-associated effector binding protein. This family contains Cass2 from Vibrio cholerae, an integron-associated protein that has been shown to bind cationic drug compounds with submicromolar affinity. Cass2 has been proposed to be representative of a larger family of independent effector-binding proteins associated with lateral gene transfer within Vibrio and other closely-related species.	5.30124e-23
NZ_CP013653.1\|WP_062493454.1\|3451357_3452728_-\|maltose-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270304	cd13586, PBP2_Maltose_binding_like, The periplasmic-binding component of ABC transport systems specific for maltose and related polysaccharides; possess type 2 periplasmic binding fold. This subfamily represents the periplasmic binding component of ABC transport systems involved in uptake of polysaccharides including maltose, maltodextrin, and cyclodextrin. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.88207e-106
NZ_CP013653.1\|WP_062491863.1\|3456605_3457850_+\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	1.06669e-30
NZ_CP013653.1\|WP_062493427.1\|3438639_3439209_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	1.65311e-88

>NZ_CP013653.1|WP_062493443.1|3446041_3446641_-|N-acetyltransferase
MEGRILTKKHHRERRFGTVIIRDANEEDMPAIQRIYARHVRHGLATFEEMPPDVPEMAARRKQVLGLGLPFLVAEIDGRIVGYSYALSFRTRSAFRFTVENSVYVEDGWGGRGIGSELLRHLIERCEAGPWRQMIAVIGDSANEASIALHKKLGFRTIGTLTNVGFKFGRWVDTVMMQRELGEGGGTLPHAPAPDPGRG
>NZ_CP013653.1|WP_062493441.1|3445186_3445957_-|DeoR/GlpR-transcriptional-regulator
MLEPDAFELNARQRLILERLMLEKEVKISELSERFRVTEMTIRRDLEKLEETGTVKRTFGGAIHIGQDLALQDRSVLNMEAKLRIGRSAAASVRPGESIFIDGGTTTLQVAKCLPHGMKITVVTNALNIAAELLNKQIPTVVTGGMLVEATNSLVGPLAAQCINDMAFDRAFLGTTGISAGHGFSNSNLYEAEVKRLAASRSAEMNVVADSTKFGVRSLASFAPLAAASRIWTDSMPEEPLAGACEEAGVRIELAE
>NZ_CP013653.1|WP_062493439.1|3444417_3444969_-|NUDIX-domain-containing-protein
MNPTWDSGKYPVLSRGVDWGPVHARLVPVVPEEDSPMVGNVTIVPFVGEACVLIRLTSGRWECVGGTLEPGERYMDALRREVREEIGSELVMFRPFGQFECFSSSPQPYRPHLPHPRFVRCVGYGTVNPVGEPTNPPDGEQVAEVAIVPVSEAVRRFRADGREELAELYLLADHIKRLDRGER
>NZ_CP013653.1|WP_082655262.1|3443746_3444421_-|HAD-family-hydrolase
MMKRKLDAVLFDLDNTLLDRDRSFGVFAEMLARHYFPGETPERHRFIAGQLRAADMDGYKDKHELFRELPDMLSWAGAPAADELFAFYSRHYPEQATLMEAAEELLDYCGERYKLGLITNGGSDVQNRKIDRLGIRARFGAVVVSGDVGIRKPDPAIFRLALSRLDVLPERALYIGDHPRNDMAGACEAGLHTVWFERNQPWDDAISAVPLRETKSLRELIGWL
>NZ_CP013653.1|WP_062496958.1|3443163_3443610_-|AraC-family-transcriptional-regulator
MDLCTIVNKPAINLVGISYCGPFSTLPDEAIRLQTEFIARKHELGSAIKSPALYSPYFGNEVFATYWACYETRRLEVVPPGMVQFTIPEHRYAMTTCTNKRIGEAYDQLFIWMKEMKLEKLENAVSIEVFYIDEHLEEVPVELYIPIK
>NZ_CP013653.1|WP_062493435.1|3442300_3443113_-|PhzF-family-phenazine-biosynthesis-protein
MNNGTIHIIDAFTAEPFKGNPAAVCFTEKPLDDERMQLIAAEMNLSETAFLVPAGDHYSLRWFMPKAEVELCGHATLAAAHFLWETGQLDGKEAARFSTLSGMLTAVRDGKGIMLDFPSEPVTPDKAPDELIEALGLIPRFTGRNRMDYLIEVESERAVRELKPDSALLSALTARGVVVTARADAGTGYDFVSRAFYPALGVPEDPVTGSAHCALTPYWSKRLRRTEMTAYQASSRGGFLRVIDAGERVKLIGEAVTVLKGELALGAGRN
>NZ_CP013653.1|WP_062493433.1|3442001_3442256_-|DUF2164-domain-containing-protein
MVFKLPREEKEALIERIRLYFEEERSETIGRLAAEQLLDWMLGEIGPYAYNQGVEDARVLAAERSQSLDDELYALKRIKPAQRR
>NZ_CP013653.1|WP_062493431.1|3440483_3441614_-|glycosyltransferase-family-4-protein
MNILQALFFPPEQPGGVSSMVPYIRERFNKAGWKMDLFSLPKRVRGKGHEEIAFETFDAAAFAGDPVVDKYMQTFRDYLWWTRLRIQQNYDLIHAHHPIAALSMKRLFPDTPLAVTIHSSYERELILNGKIREGDAAHRFLTSLYGELEAKADRLLTVSHSFRSYLAPYVQDAERIQVIPNGFDERRFKPVAHENEVPQLITVCRLVPAKGLDVLLHACAKLKSQGHPFMLHIIGDGPIRKELEQLAVSLGLYDDIIFYGYMLHPEQFMPFFDVFVLPSRAEAFGSVFAEAALCWLALVGTNVGGIAEQITDGENGLLVPPDDPDALCEALVKVVTDPAFRYNLARSAWERAKKEYSLQRVINQLKQVYAEMKPGS
>NZ_CP013653.1|WP_062493429.1|3439365_3440424_+|hypothetical-protein
MKRTGKVLQIAFTYIGTIVGAGFATGQEILQFFTRFGHWGTFTIAVATLLFIWLGTKMMVLAGEIQAKSYEDLNKALFGERAGRLVSLFMMVILLGVIAVMMAGAGSIFYEHWNISYVSGLLITIAGCYVLLRKGMKSILTVNTIVVPLMLLFTVIVLADAIASPGSSRWLTIKTDLSPWAAWAAPFLYAAFNLSMSQAVLVPLGAQIGDRKTIVAGAWIGGIGIGFMLLAGHIALSMHMPGVQQFAIPMGGIARGLGQGLQWIYTALIFAEIFTTLIADIYGLSLQLQERLKWPRNLLTAIILLICFFASRIGFEPLLSTLYPLFGLFSLGWLALIIRQRTETKGTPPGRN
>NZ_CP013653.1|WP_062493427.1|3438639_3439209_-|xanthine-phosphoribosyltransferase
METLKKRILQEASVISSDVLRLDALLNHQVDPVLTTEMGQQFARLYEGEKITKVVTLESSGIPIAFATAQALGVPLLFARRKKTLIADPESYCERVPSFTQGIVTDIMVSKKFLHDGDRVLFIDDIIANGDAARGLIKIIKRSGAELAGIGVVIEKTFQSGARTLREQGIRVDSLVKIASLDNGTITFA
>NZ_CP013653.1|WP_062493447.1|3447408_3449103_-|alpha-amylase
MRRGRKRHARAALAWLLLTVAFGLLIGCSDEANPPAVLPPDSADSAAGITDDGVLGEANDAAAKPFVIKTAQTRMGASTGAFYEIFVRSFYDSDGDGIGDLQGIIDKLDYVADLGFKGIWLMPIQPSPSYHGYDVTDYYDINPDYGTLDDLRRLTEEAHKRGIKIVMDLVVNHTSREHPWFLDAAGGNGSKYRNWYVWAEDRNLDTGEAGPWGQQVWHKRGDSTYLGVFWEGMPDLNFDEPAVRRELIKIGQFWLNQGVDGFRLDAAKHIYGDFASSAADPKTSERNVEWWQQFRSGMEEVNADVYLIGEVWDAPHVVAPYLDRALDSGFNFDLASLLIGAARMERAPDLAGVLNRMYETYGTRSGGSFVDAPFLSNHDQNRVMSELAGNVDRAKMAASLLLTLPGNPFVYYGEEIGMHGAKPDERIREPMPWSASGDAEGEANWEPSYHRQPGVSVEEQLADPDSLLNHYKTMLKWRNEEPLLGDGGIAAFPIANSGVAGFIRVQDDDMALVVHNMTGDAQVVDLQANGTVPFARIAERSKEGTSLADGKLELPPYSSVLLKP
>NZ_CP013653.1|WP_062493450.1|3449099_3449939_-|sugar-ABC-transporter-permease
MNSSARLRKGLWLLISHLLLLLIAVFTVYPALWIIFSAFREGTSLFSDTLLPEKWTLEHFRSLFTRFEFAQWYVNTLKIAFVSMLFGTLFVLLTGYAFSRFRFAGRKSLMSGLFVLGMFPSFLTMVAIYILLLNMNLLNTHSALMLVYSAGGAMGYLLVKGYFDTIPRSLEESARIDGANHWTVFFKIFLPLSRPLIVFLSVTSFAGAFNDFIFAQTVLRTNEKLTLAVGLYNMVNTNTSTQFTIFAAGCVLVAVPITLLFMVCQRFLVEGLTAGTDKG
>NZ_CP013653.1|WP_062493452.1|3449935_3451249_-|sugar-ABC-transporter-permease
MRRHRITAAALSAVATGLGQIYNRQYAKGAILFLLYVAGIFYASTRLGGAIWGLVTLGETKQQMKLVGKVYVVTPGDHSIFLMVEGLIVVFAVLVFVAIHIGNVADAYRRGKEREEGKRLHNIRETFHYVLTWKFPFIIITLPLLFVFFFSVLPILFSVLIAFTNYSSPNYLPPANLVDWIGFDSFKNMFSLSKWTGTFYGVLGWTIVWAVVSTATTFFGGFAVALLVQQKGIRLRAMWRTIFMLPFAIPAFLSLLIIRNMFNSQFGPINQYLGRLGITGPEWMSDPIWAKVTVVLANMWLGFPISMLLIIGILTTIPRDLYEAADVDGASPFQKFKAITLPSVMFALSPILIGQFAGNINNFNVIFLMTGGGPVNSDYQFAGSTDILITWLYNLSISNGKYNFASVVGIILFLIIASLSIHSFRRTRAFREDDLLR
>NZ_CP013653.1|WP_062493454.1|3451357_3452728_-|maltose-ABC-transporter-substrate-binding-protein
MVKIGKRGIWLIVCFLVFSLAACAGGSGDPKPADEGSQAGGSANEGGDSEKAGGEETAGEESAGEEAAGEDIVPEEGAKLIVWEGKEEKPFLEAMIAEFTAKYNIPVELQEVNAHDQIEKIKKDGPAGVGADVLVMPHDALGRAIAAGVVLPNDWYAEDTIANFVAPAVEAFTHDGMLYGTPRNVETYLLYYNKSLVKPEDLASWESIKAFAKSFNDPPNRFGILWKLDDSYFNYSFIAGYGGYVFGNKGTDPTDIGLNNEGAVEGMKFFQSMREVVPIKVADATNDLKTDLFQKQKLAINMDGVWQMSNFTTEKLGFEVGAVPLPPMPGDKRPIAFAGVKGYLVSSFSKYPNAAKLFIHYVTSEQAMVKNYELTGIIPARNGMDQNEAIKNNEIAAAFLEQFKYTEAMPSIVEMDAFWSNTMGALFTPIWDGADVKQTLDKTVENMKTSISQLQQ
>NZ_CP013653.1|WP_062493456.1|3453158_3454184_+|LacI-family-transcriptional-regulator
MPVTIIDVARKAGVSPSTVSRVISNNPRISKETADKVRRIMKELGYHPNEIAKSLVSKTTRTLGIILPRPADELFQNLFFSEVIRGIVAHASRSGYDLLMAAGTSGQEEVDAIARLVNGRRVDGIILLYSRRDDPLIAYLAERSFPFVLIGRSEQYPQVLSVDNDNVQAAYDATRHLIAQGHERIGFVSGPPNLIVSKDRMEGYVKALADAGLQADPEWIVEGEFLQESGYRAMSYFMNLPKRPTALVAIDDIVAFGVLRGLSELGFRVPRDLSIVGFNNLSLSELATPPLSSIDIGIYQIGYTASQTLIRAVREESGQLQPIIIPHKLVVRESSLPPADA
>NZ_CP013653.1|WP_062493457.1|3454385_3456137_-|alpha-glycosidase
MNLQAVYHRIKQNWSYAYDAETLHIRLRTARGDVQRVRLLCGDKYDWKRTNMEIDMERGVSDALFDYWEARVRPPYKRLIYRFALHDGEKTVYYSEAGFDTELTPQYYKGAFDFPYLHETDRIAPPEWVKDAVFYQIFPERFANGDPSNDPDGTEPWGGEPTPKNFFGGDLQGVIDRLDYLTELGVNAIYFTPVFEATTNHKYDTSDYFRVDPHFGTNETLKTLVRECHARGIRVLLDAVFNHSGRQFAPFVDVIEKGEESPYKDWFHVRKWPLRIEDGVPTYETFAFEPIMPKLNTSNPEVRDYLLKVASYWMDEIGIDGWRLDVANEVDHQFWREFRQTVKKANPDAYILGEIMHDAMPWLQGDQFDAVMNYPFTNTVIDFFASQEIDSAGFAAAIGALLASYPAQVNEASFNLVGSHDTPRLLTRCGGDRRLARLAVLFQFTFVGVPCVYYGDEVGLDGGYDPGCRKCMEWDEARQDREQLAFYRALIRLRLSHRALRTGGFRFLQAEPGSSTLAYERWDERERFVILINRGGRQAGFRLPAAGTEWTDALSGEAVAAAGGNLVCSLPPYGYKVLRSIRV
>NZ_CP013653.1|WP_062491863.1|3456605_3457850_+|IS110-family-transposase
MKLFVGIDVSSEELEACFMDPEGDTLETLKVENNLHGASHLRDRIVAAADKLPASEIHIGLEATSVYSWHPAMYLHEDASLQERKTKVFTINPKLINKFREAYADMDKTDRIDAWIIAERLRFGRLTTTIVMQEQYIALQRLTRMRYHLVHNLTREKQYFLQNLFYKCNAFRSEVDSSVFGHAIMEMLSEKFSLDEIADMEVADLADYLKEKGKNRFPDPEHVARCIQKAARASYRLSKVVEDSIDLVLGTSIQAIRSIQSQLKELDKAIERILAGIPGAQCLRSIPGIDRVYAAGILAEIGDIERFSDQAAVAKYAGLTWRKHQSGGFEAEDTKRIRSGNRFLRYYLVEAANSVKNRDPEFGEYYRKKYNEVPKHQHKRALVLTARKLVRLVDVLLRNGQLYTPGRKVTTAKD
>NZ_CP013653.1|WP_062493459.1|3458316_3458649_-|hypothetical-protein
MQARTGQQANGNSERAFVQTGKSGERVQPLSAGRGEESGVVRLRRGDIRQTDGPNAGRLDNTVTSLLQFAIEPLRLRERNELEYRSQPRGGVSRFAIGDTFGQTILFVCA
>NZ_CP013653.1|WP_145977224.1|3458733_3459603_-|hypothetical-protein
MKVQNVGGLKTVIQYFEREKGLALTGLLGFLLAGICGVWVLLFGGQIAPYGDVSRAFSFNAALGIFLLTTAAILPFSGLEAKSRTFFRRAYIMLALYSYFAETVQHFRGMDPRFNPDGTAFDSMVGIIFGFVALLLVLFYLFLAFSYFRSKAYRLRPELVLGIRYAMIAVMLSFAGGIWLSFNQGRFFGEEGNIIWFHGLGFHALQWVPLVAWLTERGAVVPALRRRLIHIAGIAYSLGLTAIGAQTLLGQSLFQWTVLPIVAACCFLTALVPAAVALRRQNRSITVER
>NZ_CP013653.1|WP_160327808.1|3460055_3460535_+|AraC-family-transcriptional-regulator
MDYRIEEKEAFTVVGKAMHCTCQDNEHTRQIPKFWEDSHRDGTIARLNAVSADGVLLGVMTDMQPGKEEFTYMIASRTDQASVADGLDARTIPASTWAIFTAVGPIPETIQSLFGRIYQEWFPATGYEHAGTPEMEVYPPGDVAAEDYRCEVWIPIVKR

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Crispr_ID: NZ_CP013653_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013653_15

3729179-3729290

Orphan

Consensus_repeat	Method
GTGCGGGGTCCGCGGCCACACTGCGCGGTGCGGG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP013653_15

>merge|NZ_CP013653|15|3729179-3729290|CRISPRCasFinder
GTGCGGGGTCCGCGGCCACACTGCGCGGTGCGGGGGCCGCAGCCGCACCTGCGCTGCGGAAGTTCGCACCACACCGCGGTGCGGGGGCCGCGGCCACACTGCGCGGTGCGGG

>NZ_CP013653|15|13|3729179-3729290|CRISPRCasFinder
GTGCGGGGTCCGCGGCCACACTGCGCGGTGCGGG	GGCCGCAGCCGCACCTGCGCTGCGGAAGTTCGCACCACACCGCG
GTGCGGGGGCCGCGGCCACACTGCGCGGTGCGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013653.1\|WP_160327818.1\|3730178_3730796_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|197666
NZ_CP013653.1\|WP_145977233.1\|3729295_3729715_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062493882.1\|3732277_3732748_-\|DUF664-domain-containing-protein	unknown	unknown	gnl\|CDD\|225200
NZ_CP013653.1\|WP_062493855.1\|3719013_3719817_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP013653.1\|WP_062493893.1\|3735785_3736316_+\|polyketide-cyclase	unknown	unknown	gnl\|CDD\|176868
NZ_CP013653.1\|WP_062493875.1\|3729680_3730088_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319910
NZ_CP013653.1\|WP_062493878.1\|3731156_3731738_-\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153233
NZ_CP013653.1\|WP_062493859.1\|3720636_3721644_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NZ_CP013653.1\|WP_062493863.1\|3721689_3722460_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_CP013653.1\|WP_062493857.1\|3719841_3720615_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NZ_CP013653.1\|WP_062493887.1\|3734274_3735168_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|223589
NZ_CP013653.1\|WP_062493872.1\|3725885_3726332_-\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NZ_CP013653.1\|WP_062493869.1\|3725082_3725889_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
NZ_CP013653.1\|WP_062493880.1\|3731760_3732237_-\|damage-inducible-protein-DinB	unknown	unknown	gnl\|CDD\|225200
NZ_CP013653.1\|WP_062493868.1\|3723492_3725034_-\|acyl--CoA-ligase	unknown	unknown	gnl\|CDD\|341259
NZ_CP013653.1\|WP_062493873.1\|3726793_3728032_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP013653.1\|WP_062493890.1\|3735361_3735700_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP013653.1\|WP_062493884.1\|3732990_3733536_-\|GrpB-family-protein	unknown	unknown	gnl\|CDD\|377252
NZ_CP013653.1\|WP_062497015.1\|3728445_3729108_+\|DUF559-domain-containing-protein	unknown	unknown	gnl\|CDD\|225408
NZ_CP013653.1\|WP_062493865.1\|3722492_3723473_-\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176227

Protein	Function_ID	Function_description	E-value
NZ_CP013653.1\|WP_160327818.1\|3730178_3730796_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	9.59626e-18
NZ_CP013653.1\|WP_062493875.1\|3729680_3730088_-\|VOC-family-protein	gnl\|CDD\|319910	cd07246, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	6.58053e-39
NZ_CP013653.1\|WP_062493882.1\|3732277_3732748_-\|DUF664-domain-containing-protein	gnl\|CDD\|225200	COG2318, DinB, Uncharacterized protein conserved in bacteria [Function unknown].	5.83458e-28
NZ_CP013653.1\|WP_062493855.1\|3719013_3719817_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	9.1593e-21
NZ_CP013653.1\|WP_062493893.1\|3735785_3736316_+\|polyketide-cyclase	gnl\|CDD\|176868	cd07826, SRPBCC_CalC_Aha1-like_9, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	4.74433e-35
NZ_CP013653.1\|WP_062493878.1\|3731156_3731738_-\|DJ-1/PfpI-family-protein	gnl\|CDD\|153233	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	6.60385e-51
NZ_CP013653.1\|WP_062493859.1\|3720636_3721644_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	1.3825e-48
NZ_CP013653.1\|WP_062493863.1\|3721689_3722460_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.54799e-53
NZ_CP013653.1\|WP_062493857.1\|3719841_3720615_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.6416e-129
NZ_CP013653.1\|WP_062493887.1\|3734274_3735168_-\|serine/threonine-protein-kinase	gnl\|CDD\|223589	COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair].	1.44379e-05
NZ_CP013653.1\|WP_062493872.1\|3725885_3726332_-\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	1.17783e-23
NZ_CP013653.1\|WP_062493869.1\|3725082_3725889_-\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	3.64997e-38
NZ_CP013653.1\|WP_062493880.1\|3731760_3732237_-\|damage-inducible-protein-DinB	gnl\|CDD\|225200	COG2318, DinB, Uncharacterized protein conserved in bacteria [Function unknown].	6.23777e-30
NZ_CP013653.1\|WP_062493868.1\|3723492_3725034_-\|acyl--CoA-ligase	gnl\|CDD\|341259	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD. This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions.	4.77832e-156
NZ_CP013653.1\|WP_062493873.1\|3726793_3728032_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.92105e-68
NZ_CP013653.1\|WP_062493890.1\|3735361_3735700_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.40999e-19
NZ_CP013653.1\|WP_062493884.1\|3732990_3733536_-\|GrpB-family-protein	gnl\|CDD\|377252	pfam04229, GrpB, GrpB protein. This family has been suggested to belong to the nucleotidyltransferase superfamily. It occurs at the C-terminus of dephospho-CoA kinase (CoaE) in a number of cases, where it plays a role in the proper folding of the enzyme.	1.18701e-66
NZ_CP013653.1\|WP_062497015.1\|3728445_3729108_+\|DUF559-domain-containing-protein	gnl\|CDD\|225408	COG2852, COG2852, Very-short-patch-repair endonuclease [Replication, recombination, and repair].	0.00869407
NZ_CP013653.1\|WP_062493865.1\|3722492_3723473_-\|zinc-binding-dehydrogenase	gnl\|CDD\|176227	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	3.57503e-151

>NZ_CP013653.1|WP_062497015.1|3728445_3729108_+|DUF559-domain-containing-protein
MNFEDMHAQWIQYHLQKRKGERKGRLERGHQTAEKLFCHNVWWPLRGNFDDLHPEYEVLDWRGHSYFCDFVWLTPTVKLVIEIKGFGPHVRDMDRQKYCNELNRETFLSAIGFQVISFAYDDVAQRPDLCITLLRLVLSRYQFSAPDLKGAAEREIVRLAYALARPLRPIDVEKHLGINYRTSVRALQSLCGKGVFSPVTGADGKYVVRYVLQHNAFHGL
>NZ_CP013653.1|WP_062493873.1|3726793_3728032_-|MFS-transporter
MYRNWKKNLTLFLASQTISLFGSSLVQYAIMWYITLNTQSGVMMTIFIICGFLPTFFLSPFAGVWADRYNRKKLIMISDSLIALSTLILAMLFLIGYDALWLLFVVSAVRALGTGVQTPAVGAFLPQLVPGDKLTKANATYGSLQSLVMLASPMLSGALMTMAPIETIFFIDVVTAAIAVSILLLFLKAPVHAKALDKQEISYFDDMRKGFAYIKNHDYVKTFFLFVAIFMILAAPVAFLTPLQVTRSFGNDVWRLTAIEITFSIGMMAGGVMMASWGGFKNRVYTMVLANLAMGVCTFALGIIPVFWLYLVVMGMIGIAMPVFNTPSTVLLQEKVEENYLGRVFGVFGMITSSMMPLGMLVFGPIADVIEIEWLLIGTGVLLVIQSLIMLGNKVLIKAGSPLPQAQAEAEE
>NZ_CP013653.1|WP_062493872.1|3725885_3726332_-|PaaI-family-thioesterase
MSVLTKDQLSELLLKSNFHRFLNITVESISENTITLRLPFKEEFLAGASGTHIHGGIIASLIDIAGDFVFAAILGTALPTINMRVDYLSAGGREDLIASAHVIKLGRSVGISDIVIANPEGKTIAIGRGLYSTAAAGKSSPPGEGKQG
>NZ_CP013653.1|WP_062493869.1|3725082_3725889_-|VOC-family-protein
MSFEFDHLIHYVREPNEAIRLLRQTGLHAVEGGRHEQRGTYNALCYFDLSYIELIGVFDQQLADRNRTPHSLLHTIANASCAEGFVRLAIRTNRIEEDAERYAKQGFEVIGPVQGHRKRPDGSSVRWQQLYLAHPDQRFPLPFLIQWEENDEERRHDLAKRNVISPHPSGIVELSYVALAVRDFQTAADWSRWFGLALGDVVTDESIQAECRTLKLPGGNLKFCKPAGAGIVSDALAERGEGPFMVGLSGGLKREEAYLLGGRYRFNI
>NZ_CP013653.1|WP_062493868.1|3723492_3725034_-|acyl--CoA-ligase
MKASNFGLLIDQAVRLHPDKAALISGEQTWTYAELNDRMNKAGNLFKSFGVKRGDRVAVFFGNDLRFIEIIFGIMRIGAIPVPVNVKLGDDHLAYIIQDCGADAIVFHASFEEKISRLYEAGLLKHYIGAGSTSLFPAHSYDELLADQPAGLAVAEVRAEDVCYLPYTSGSTGKPKGCMLTHGGQYWISEALRTVRKVSHEDRALIAVPLYHANAMVNIQMSLRAGASIVLLPGVDPKNILESVQTQGCTFMTGVPAMYQMILAYYKENPHYDLSSLRFILCGSSEVPLELVQELERNLRVDILESYGLTEGGPVVFSSSRGAHNRQGSPGHPLPGCRVRVVGEDGEDLPPGQVGELWVKSPGVAKGYWNLPEVNASRFTPDGWLKTGDLIRLDEEGYAYIAGRKDDMINIGGEKAYPKEIQNLLLKHPNIANVCVIARAHPVKGQVPVAFVVPTEDSELSAKDVQDYFFQHGAAYAYPREVYFLDELPLTGTGKVDRTKLTSLLNENDANAN
>NZ_CP013653.1|WP_062493865.1|3722492_3723473_-|zinc-binding-dehydrogenase
MKAALIVENGDLNNVVIGEYPKPEPQAGEVLIQVKACALNHLDIFVRRGIPGRQLKLPHISGGDVVGIVAELGEGVTEVQVGQRVLIDPKIPKFGALGEDLQGGLAEYVKVPAGNCIPLPDDISDEDAAALPIAYGTALRMLVTRGKLQAGETILILGASGGVGNAAVLIAKSIGATVIAAAGSDEKLEKLKALGADYLINYNKVNFSHETWHITGKQGADVIVDYSGKETWPKSILACKKGGRILTCGATTGFEAVTDLRYVWKREITIIGSTSWERSDLLTLLDWVRSGKLKPVIDRVLPLEEAREAHRLMEQREIFGKLILKP
>NZ_CP013653.1|WP_062493863.1|3721689_3722460_-|ABC-transporter-permease
MSERGILWRIVAGQILLLVLFLGTVEVVVQKGIVGRLYLSAPTQVVQELVKLLQQSETFRNLYVTLLEFALGFGLSVVSGFGIGLFLVLVSRAEQFFNPFLSALMAIPKVTIVPLLTLWLGIGLVHKVAVVFLFCIFPIIYNTVAGIKQTSENYLKVARVFEATSYQTVTKVILPSAVPSIFAGLRVSAGSGLIGALFGEMLASKEGLGNMLVQSTSLYDTARVFALITVVTVVSILIIAFINLLEKKVFLRWKSS
>NZ_CP013653.1|WP_062493859.1|3720636_3721644_-|ABC-transporter-substrate-binding-protein
MKKSGKTVQALLLVMLLFVFASLLASCSGGKQTTAAEGAQEDGQPKLEPVKYAALGGLSGLAVRFGAEKGFFAEEGVDIQFVELTDQVAGLSSGDVDIADMPTTTAIIGAGKGAPLKIVSSMFRTKGPFYLIGQPEIETIADLKGKKVGVGRFGTGLDVYTRYILKQNGVEPDDVTFIANGTMNEAFASLESKQVDATIIHEPFVSLSEKNGKAKLLAKGWDYLPTFHTGVLSARNEFIDKHPDLVEKTLRAYFKSQDYAKSNLDEYLDYVVQHMKIDRDVLVKAFEREEPIWENNPDVDADALKDTQDIQFELGFQDQIYDISKIVDLRFIPKK
>NZ_CP013653.1|WP_062493857.1|3719841_3720615_-|ABC-transporter-ATP-binding-protein
MAGFSIRHVSKVYGGAVPTVALEDIDLTIHDGEFLCILGPSGCGKSTLLEMLAGLQLPTSGEIVYGDKILQGPDRRLGVVFQDPSLYPWRTVFENVELGLEIRGVKKADRKNTVQKYLTMVGLDGFEHKYPHQLSGGMKQRAGLARALANRPDVLLMDEPFGAVDHLTRLQLQNDLLNIWEAEKKTVVFVTHDVNEAVFLGDRVVLLSPRPGKLKQIFNISHQRPRERGDAGLLKIQNDIYAAIYENKKQAEPEYHL
>NZ_CP013653.1|WP_062493855.1|3719013_3719817_-|alpha/beta-hydrolase
MTAQAGTFTQKQVSLPSGVMEYRESGQGSPVLYLHSAGGVSVNTALEKLAESYRVLIPVFPGFDDTPVLEHIRSMQDLARLSAQFAVHALGEQRQVNVIGHSFGGWVAAWLSVLHPEIVGRLVLEAPAGFRPNGQGGLVGDPETIRRKMYAHPERAALSDKPASVKKRNREMVHFYHESVSLDEELLSRSGEISMPTLILAGTEDGIIPAEGLRMLKAKIRTSYLFYIYDAAHQIEVDQPERFVRVVKDFFTYGELFLIPRKEDEQI
>NZ_CP013653.1|WP_145977233.1|3729295_3729715_+|hypothetical-protein
MVAGFLHFYIIFPWPGAFLMKFLRKYIIFTLNYQNIGGGEQKNCIIAGISPPVLGLRVNSCTFAPFKSSMNASHHCESSMTASNHSIKPQQPQAITTQYGRGLPHRASRDSKESVFLNYRRDECLSAHFIRNNRSRSLW
>NZ_CP013653.1|WP_062493875.1|3729680_3730088_-|VOC-family-protein
MKQFAPVGYQSVTPYFIVSNADQMIEFLVTAFYAEELNRHTDETGTVTHAEVRIGDTVVEISEGNDRFPSRVNTLHVFVENTDDCFKRALDAGAETLYEPSDMPYGERSGGIVDPFGNHWYIATFTKGSGSGYYG
>NZ_CP013653.1|WP_160327818.1|3730178_3730796_-|helix-turn-helix-domain-containing-protein
MEPGHSVLCGPHSDYYAIDTTGEATVIGIHFKPGGTRPFLKEPLQELLNSHVPLDAVWGAKAGSLREELLGAQSPEGMFRVMERGLLSFAFRPLTIHPAVRYALNNLPGRHVMEVVDRIGLSHRAFNQMFKETVGMTPKVYSRILRFQHALDCIARSENIVWTDIALSCGYYDQAHFIKDFQSFSGINPGDYLAVPGRHRNHIAL
>NZ_CP013653.1|WP_062493878.1|3731156_3731738_-|DJ-1/PfpI-family-protein
MRIGFVVFNGITFLDFIGFYDVVNRLNWFEETKGTTWDICGLSEEISDESGLTIKVNRIKPDLSEYDLLFVPGGMGTRKLRFDEECISWLRQAGQVQYIVSVCTGSLLLGAAGFLENKKATTHPNAYELLEPYCKEVVKARIVRDGNVITAGGVSTSIDLALYIVELLVNKGAVEIIKKQIDYPYERQGMIEV
>NZ_CP013653.1|WP_062493880.1|3731760_3732237_-|damage-inducible-protein-DinB
MNRRIFQLYDYHIWANERMMNHLKSLPDEIFLKEVDLGFKSIVEVIGHIVSVDEVWFSRIKEEPSASLANKQFSNIEEAGNYMNNLQSQIREYLLSVHDMEKSVTYRNTAGQEFRNSIAEIVQHVVNHGTYHRGNISTILRHLGYSGIQTDYIAYLRK
>NZ_CP013653.1|WP_062493882.1|3732277_3732748_-|DUF664-domain-containing-protein
MKQLFVYNWEVRDEWFELCRQLPHRELTKERTGGVGSILKTFFHIMDVEYSWIKALQEEPVPDPDYSDDLDLEFIRQLSNQYRGEIKDFLDHWTADLEERQILAPWSKHTYTHGEILRHVIAHEIHHMGQLSVWSRELGLQPVSANFIGRGIKNDL
>NZ_CP013653.1|WP_062493884.1|3732990_3733536_-|GrpB-family-protein
MSDEITIESYQPEWPLRFQRIAQLLRAELGETAVRIDHIGSTSVPGLAAKPIIDIQISVRSFELFEAIRLPLERCGFRWRSDNPDLTKRYFREGPGMARTHIHVRREGSWSEQLALLFRDYLRCHEEDRLAYAECKIRLAERYRDDRHGYVEAKRPFIWSMMQKADQWSQMVGWMPGERDA
>NZ_CP013653.1|WP_062493887.1|3734274_3735168_-|serine/threonine-protein-kinase
MSSVPYTITIDNVMFQLQEAYSFDWLKSLGRVFTVFDRQDSGNIGFGVKKGGRKYFVKFAGCKPIDFEGDPQETIDRLKQAIPLYHELSHPALIRLVSHFPVETGYAAVFEWFDGECLHSHWSFPPPAKYEHPDSPFYRYKRLPIEKRLTSLDAIFSFHVHVESKGYVAVDFYDGSILYDFSNYATRICDIDFYRKAPSVNDMGDFWGSKRFKSPEEFTYGAPIDARTNVFTMGAIAFGLLGGELDRSFSKWEAGQALYDVAMRAVRPDRPLRYASVAEFKAAWDAARQRRGSLQQQ
>NZ_CP013653.1|WP_062493890.1|3735361_3735700_+|winged-helix-turn-helix-transcriptional-regulator
MNVSTFSALAEPNRLDIVELLRDGPLPVGEIADRLQLGQPQTSKHLRVLNEAGLVEVQPVANKRIYKLRAQPFQELDDWLETFRRMWEEKFDNLEAYLRQLQEQDHRGGDKE
>NZ_CP013653.1|WP_062493893.1|3735785_3736316_+|polyketide-cyclase
MTESSVTSKETPGNHHEFVYTRVFNAPRELVFKVWSEVDHLKKWWGPRGFEWGTAKLDFRPGGVFHYSMRTPDGIEMWGKFEYREIEEPEKIVFVNSFSDAEGNKIRAPFSPAFPLEVLNILTFTEHEGKTTLTLAGGPIHASEEERNTYKGMIESLKQGFGGTFDQLSDYLATIS

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Crispr_ID: NZ_CP013653_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013653_16

4886081-4886154

Orphan

Consensus_repeat	Method
AAAAATCCTGCACTTTCGCAGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013653_16

>merge|NZ_CP013653|16|4886081-4886154|CRISPRCasFinder
AAAAATCCTGCACTTTCGCAGTAATTTGAGCCAAAGACATCTGTCGGGAGCAAAAATCCTGCACTTTTGCAGTA

>NZ_CP013653|16|14|4886081-4886154|CRISPRCasFinder
AAAAATCCTGCACTTTCGCAGTA	ATTTGAGCCAAAGACATCTGTCGGGAGC
AAAAATCCTGCACTTTTGCAGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013653.1\|WP_062495632.1\|4896590_4897244_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP013653.1\|WP_160327847.1\|4885704_4885857_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062495631.1\|4895178_4896471_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381054
NZ_CP013653.1\|WP_062495615.1\|4880280_4881777_-\|xylulokinase	unknown	unknown	gnl\|CDD\|198374
NZ_CP013653.1\|WP_062495624.1\|4889336_4890566_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341031
NZ_CP013653.1\|WP_062495619.1\|4884587_4885559_+\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
NZ_CP013653.1\|WP_062495609.1\|4875701_4876088_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062497230.1\|4878265_4879171_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381312
NZ_CP013653.1\|WP_062495611.1\|4876084_4877416_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377581
NZ_CP013653.1\|WP_062495622.1\|4888806_4888986_+\|small-acid-soluble-spore-protein-H	unknown	unknown	gnl\|CDD\|377962
NZ_CP013653.1\|WP_062495627.1\|4892029_4892377_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|225818
NZ_CP013653.1\|WP_062495613.1\|4877430_4878132_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP013653.1\|WP_082655391.1\|4887877_4888642_-\|M15-family-metallopeptidase	unknown	unknown	gnl\|CDD\|350620
NZ_CP013653.1\|WP_062495607.1\|4874312_4875587_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|367519
NZ_CP013653.1\|WP_062495626.1\|4890627_4891746_-\|lactonase-family-protein	unknown	unknown	gnl\|CDD\|378416
NZ_CP013653.1\|WP_062495617.1\|4881813_4883127_-\|xylose-isomerase	unknown	unknown	gnl\|CDD\|235487
NZ_CP013653.1\|WP_062497232.1\|4883319_4884501_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_CP013653.1\|WP_062495621.1\|4886479_4887724_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP013653.1\|WP_062495629.1\|4893980_4894997_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NZ_CP013653.1\|WP_062495634.1\|4897240_4898860_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099

Protein	Function_ID	Function_description	E-value
NZ_CP013653.1\|WP_062495632.1\|4896590_4897244_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.3337e-98
NZ_CP013653.1\|WP_062495631.1\|4895178_4896471_+\|hypothetical-protein	gnl\|CDD\|381054	cd19588, serpin_miropin-like, serpin miropin and similar proteins. Miropin, the serpin from Tannerella forsythia, is thought to contribute to the virulence of periodontal pathogens by inhibiting neutrophil serine proteases. Miropin broadly inhibits serine endopeptidases (SEPs) including trypsin, neutrophil elastase, pancreatic elastase, subtilisin, and cathepsin G and cysteine endopeptidases (CEPs) including papain, calpain-like peptidase Tpr, and gingipain K through various reactive-site bonds. This is achieved by offering several target bonds of the RCL for cleavage within a bait region, instead of a single RSB as found in canonical serpins. In addition, promiscuous inhibition is facilitated by the capacity to insert strands deviating from the canonical length into the central sheet A, while keeping the prey peptidase bound and inactivated. The structural adaptation of miropin to provide a relaxed inhibitory specificity, which allows for formation of inhibitory complexes using different sites, is unique among serpins. SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia. A classification based on evolutionary relatedness has resulted in the assignment of serpins to 16 clades designated A-P along with some orphans.	9.94373e-177
NZ_CP013653.1\|WP_062495615.1\|4880280_4881777_-\|xylulokinase	gnl\|CDD\|198374	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases. This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	0
NZ_CP013653.1\|WP_062495619.1\|4884587_4885559_+\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	9.22711e-76
NZ_CP013653.1\|WP_062495624.1\|4889336_4890566_-\|MFS-transporter	gnl\|CDD\|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.87158e-104
NZ_CP013653.1\|WP_062497230.1\|4878265_4879171_-\|aldo/keto-reductase	gnl\|CDD\|381312	cd19086, AKR_AKR11C1, AKR11C family of aldo-keto reductase (AKR). Bacillus subtilis uncharacterized oxidoreductase YqkF is a founding member of aldo-keto reductase family 11 member C1 (AKR11C1). It may function as oxidoreductase. This family also includes Bacillus halodurans AKR11C1, an NADPH-dependent 4-hydroxy-2,3-trans-nonenal reductase.	1.28446e-110
NZ_CP013653.1\|WP_082655391.1\|4887877_4888642_-\|M15-family-metallopeptidase	gnl\|CDD\|350620	cd14845, L-Ala-D-Glu_peptidase_like, L-Ala-D-Glu peptidase, also known as L-alanyl-D-glutamate endopeptidase. This L-Ala-D-Glu peptidase family includes L-alanyl-D-glutamate peptidase (bacteriophage T5) (also known as L-alanoyl-D-glutamate endopeptidase), and Ply118 and Ply500 L-Ala-D-Glu peptidase. Bacteriophage endolysin degrades the peptidoglycan of the bacterial host from within, leading to cell lysis and release of progeny virions. The bacteriophage endolysin Ply118 cleaves between L-Ala and D-Glu residues of Listeria cell wall peptidoglycan. This family belongs to the MEROPS peptidase M15 subfamily C.	3.09313e-47
NZ_CP013653.1\|WP_062495622.1\|4888806_4888986_+\|small-acid-soluble-spore-protein-H	gnl\|CDD\|377962	pfam08141, SspH, Small acid-soluble spore protein H family. This family consists of the small acid-soluble spore proteins (SASP) of the H type (sspH). SspH are unique to spores of Bacillus subtilis and are expressed only in the forespore compartment during sporulation of this organism. The sspH genes are monocistronic and are recognized by the forespore-specific sigma factor for RNA polymerase - sigma-G. The specific role of this protein is unclear but is thought to play a role in sporulation under conditions different from that of the common laboratory tests of spore properties.	5.50089e-24
NZ_CP013653.1\|WP_062495627.1\|4892029_4892377_+\|DNA-binding-protein	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	2.26327e-06
NZ_CP013653.1\|WP_062495613.1\|4877430_4878132_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	7.53752e-75
NZ_CP013653.1\|WP_062495611.1\|4876084_4877416_-\|hypothetical-protein	gnl\|CDD\|377581	pfam05975, EcsB, Bacterial ABC transporter protein EcsB. This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters.	2.85162e-34
NZ_CP013653.1\|WP_062495607.1\|4874312_4875587_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|367519	pfam03486, HI0933_like, HI0933-like protein.	0
NZ_CP013653.1\|WP_062495626.1\|4890627_4891746_-\|lactonase-family-protein	gnl\|CDD\|378416	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller. This entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyze 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonising enzyme carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold.	1.8997e-140
NZ_CP013653.1\|WP_062495617.1\|4881813_4883127_-\|xylose-isomerase	gnl\|CDD\|235487	PRK05474, PRK05474, xylose isomerase; Provisional.	0
NZ_CP013653.1\|WP_062497232.1\|4883319_4884501_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	3.70134e-67
NZ_CP013653.1\|WP_062495621.1\|4886479_4887724_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.11768e-59
NZ_CP013653.1\|WP_062495629.1\|4893980_4894997_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.35661e-69
NZ_CP013653.1\|WP_062495634.1\|4897240_4898860_-\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	5.63351e-101

>NZ_CP013653.1|WP_160327847.1|4885704_4885857_-|hypothetical-protein
MDTEFYSAFEKLRREELDAVIRGDKTLEEALDRIQAEGQALTDRIPEKKP
>NZ_CP013653.1|WP_062495619.1|4884587_4885559_+|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
METILYILAFLIAFLFVYVLIPPIGRLAFCIDFVDKPRKDVERKIHREPIPLTASYVMFLGFFIAYLLVSREFNMETAAIFAGGVLLIVIGTIDDWYKTKGKDFPALPKMIVQVSAAVLVYASGIAFTGFYNPMSGEYVVLPEILQFILTILWIFGVTTVINFSDGMDGLAGGLAAISAITLFIVALAKGQSSSAVMAIALVGITLAYLRYNKPPAKIFMGDAGATFLGFILAVIALDGAFKQATVLSLFIPILALGVPIFDNLFVVAKRFMQGKAIYEADASQAHYRLLRSGMTQKQAVLFLYLISTCLSLSSIILLLLMQV
>NZ_CP013653.1|WP_062497232.1|4883319_4884501_+|ROK-family-transcriptional-regulator
MTKSTGDQAMIKKINTAIVLEAVLKDAPLSRAQISERTGLNKATVSSLVQQLIDRHLVIEIGHGESSGGRKPVMLLFNAQAGHAVGIDLGVNYIRGVLTDLDGAVLHERVSGLKRRDPDHVLPELASCIEYLIARAPDSPYGIVGIGIGVPGIVDDRGTVLLAPNLEWRNVPLREWAEERFALPVAIDNEANAGALGEQKYGAGRNVAHQIYVSVGIGIGTGIILNKELYKGASGFSGELGHLSIELDGKPCRCGSRGCWELYASEMALLERAAPLGYEDLDALLDAAEQDGRVRQLFRETGTFLGAGIASIANVFNPDLVIIGNRMSKAQRWIEEAVREEAAKRALPYHRERMRIQFAELEDRSAVRGAANDAISRFFAKVKSGRYDDSANL
>NZ_CP013653.1|WP_062495617.1|4881813_4883127_-|xylose-isomerase
MAYFKNIGKIVYEGRESDNPLAFKHYNPQEVVLGKTMEEHLRFAVAYWHTYVGDGSDPFGIGTAIRPWDSLTGMDKAKARVEANFEFMEKLGLPFFCFHDRDIAPEGETLQETNANLDVIVALLKDHMRSTGKKLLWNTANMFTHPRYTHGAGTTCNADVYAYAAAQLKKSLEIGKELGAENYVFWGGREGYESLLNTDMALELDNLARLYRMAIDYAKEIGFDVQFLIEPKPKEPTKHQYDFDAATTIAFLRKYELENHFKLNLEANHATLAGHTFEHEIRVAAINGMLGSLDANQGDLLLGWDTDEFPTDLYATTLTMYEVLKAGGLGRGGVNFDAKVRRGSFEPEDLFHAHIAGMDAYAWGLKAAARLIEGKVLDAFVEERYRSFREGIGADIVAGRATLASLEQYALQNKPIRNESGRLERIRAALNEAIFGV
>NZ_CP013653.1|WP_062495615.1|4880280_4881777_-|xylulokinase
MSYVIGIDLGTSAVKALLVDRDGAVRGEAAREYPLYHEHSGWSEQEPEDWVEATVEALRQLTASAGIAPDEVEGISFSGQMHGLVLLNGDGRPVRRAILWNDTRTSEQCRQIERTLGSKLLGIARNPALEGFTLPKILWVRQHEPDVFAQARQFVLPKDYVRYRLTGALHMDYSDAAGTLLLDVAEKRWSGEIREAFGLSESFCPPLVASHEPVGTLLPQWAGRTGLSPGVKVFAGGADNACGAIGAGILSEGLTLCSIGTSGVILSYENDKTKDFAGKAHFFNHGKEDAYYAMGVTLAAGYSLSWFKKTFAPEQSFDRLLEGVGDVPPGAGGLLFTPYLVGERTPHADAAIRGSFIGIDGSHERIHFVRAVMEGITFSLNETVDIFRRAGKTVDRVVSIGGGAQNPAWLQMQADIFGASVVPLENEQGPGLGAAMLAAYGCGWFESLEECAARFVRHGDPYEPNPDAVRAYEELFRLYRSVYGQTRPLSAELAPFRV
>NZ_CP013653.1|WP_062497230.1|4878265_4879171_-|aldo/keto-reductase
MKYRTLGRTGLKVSVVGIGTWQFGGEWGVDYTQSDVDAILGKGKELGINLIDTAECYGDHLSEKLIGGYLRRDRREDWIIATKFGHHFHAHLKRDDRSSAEDVREQLEQSLRALGTDYIDIYQFHSLSDERFNNDDMWTMLDKQVQAGKIRYLGISIGYNGNIYQTKNATKVKADVIQVVYNRLDRTPEEEVFPSCQDQNLGVLARVPLASGFLSGKYSKDSVFPENDVRASKGHNDPEGRIKMIEEVERIRKEEVPEGVNMAEWALAWCLKHPAVTAVIPGCKDPSQVESNARAAELVQE
>NZ_CP013653.1|WP_062495613.1|4877430_4878132_-|ABC-transporter-ATP-binding-protein
MTVLKADIRFAGYEEKKPVIRDIGFEVGAGELVGLIGPNGAGKSTTIKTILGLLRHMEGKVQVLGDNGRYAYVPEQPVLYEYMTLWEHLELAASAYELNGPQLAERAEALLRRFRLSDARDQYPVKFSKGMQQKTMLIIGFMLEPDVYIVDEPFVGLDPRATRDFLELLESERKRGASILMSTHVLDTAERICSRFVLVNAGTVVATGTLDEVREQAGLAPDASLFDCFDALT
>NZ_CP013653.1|WP_062495611.1|4876084_4877416_-|hypothetical-protein
MGHRWTPPRLFAKRVASFWRSQYKVWKTALDWTVWLYLLIPGLWICGGLYADLWRDEPAWLSNIPLAIGSVALLLLGVLSGRLRVFVEEADLLFLMQRPRWVRTLAKLGIVYTAAGQIVKTAVLFVVALPWLALGLDLQAWQIIGWAAFTALCGLLSSLTFAMMETRYRSWRKYAAGTALVIVLSAIYIVPVAVVLSEPVPFAASVAAVLAAVLIAAVARLRQRGTFEADIARERKARLSSTELLMSQVIEKKPVISFKRPLLFRRSGRIFRGNDQADVIAGQYIKSCLRQFRLIRVLYGYFAVSTAAVALSPAALGLGLAAALPVLPSIWLQDGWRGWLNEPFMAQFRWRKTALAKGGNRVRFWLLLPGTVWLAAYAGWRAFGWWGAPLAAAAILGWSALLQSVIGSLMTVRQEESGIYGDGRERMEEPASGHTDEKKEDRP
>NZ_CP013653.1|WP_062495609.1|4875701_4876088_-|hypothetical-protein
MMQANSSTALLFQFSDAASAAAACDTMIELGYDSMLAEDARLHLHLERDDVVSALEIAQAHGGRLIETSPLLESSLADGVYAMDQVPIPAHIVNEDWTEAYASGDEPADETRDGTELPFNGFPVEENG
>NZ_CP013653.1|WP_062495607.1|4874312_4875587_+|NAD(P)/FAD-dependent-oxidoreductase
MNYDVIIAGGGPAGLMAAVAAGSAGASVLLVDKGDKLGRKLGISGGGRCNVTNRKEPDELIRYIPGNGKFLHSALSKFGSREIIAFFEEMGIRLKEENEGRMFPVTDKAKSVVDALIRKVRSLGVEIRVNVKVDSLDIQGGELRGIRLASGETVRASAVIVATGGKSVPRTGSTGDGYEWAKQAGHTITDLYPTEVPLTSPEPWIQSRELQGLSLSGVVLTVYDSKGKKLVAHEGDMLFTHFGLSGPAALRCSQFVVKALKRSGAETVTVAIDLLPDKSADDIYAETLELARNEPKKAVRNALRGYIPERLLLFLLNRCGIDGEVTYANIPRGPWRELAMQMKSLPVRVNGTLSIEEAFVTGGGVHLKEIDPRTMESKLLPGLYFCGEVLDVHGYTGGYNITAAFSTGYTAGSSAAAKAMPVHR
>NZ_CP013653.1|WP_062495621.1|4886479_4887724_-|MFS-transporter
MSNAAAAVSPGGSLFRNRFYQTVLFSNVLLQIGIWVRNFAILMFVTDMTNDDPVAVSLISVVEFAPIFVFSFIGGTFADRWRPKRTMIWCDFLSAISVFIVLLTLIYGSWEMVYLATFVSAILSQFSQPSVMKLFKQHIAPEQLQQAMAVFQSLIAIFMVLGPSLGIFVYRQWGIEIAIAVMGVAFLLSAVVLFRIPSDFPQERTDAEKPDFRKELKEGFAYVWRSPVLKVLGGAFAAAGMAVGIVQTLGLFIVIERLGEHKDFLQFLLAVNGVAMLIGGGLVMAVAKKISPQKLLALGMSVGALCMVGVGWSTSVPVTLALQFVNGLVFPCIHIGINTMILQWTNQSFIGRVNGVLSPMFMGMMVIMMSVSGLLKKVFPLVGIYTAAGLIMLLGTLLLSTTFKHKPEQEQLSA
>NZ_CP013653.1|WP_082655391.1|4887877_4888642_-|M15-family-metallopeptidase
MAVGAVRSADAEAGNARTKNASGGFERLKNSEPAYRRQASRPHYNRQPSRLTSRKPSTRSASYRRPRKKKQPNNKYVLAAILVLVILIWAKWQSPAPEIPESQRRTAETSETVAGLHPAVIEKKNELVRETKKIGISIVITQGFRSHEEQDRLYEQGRKTEGRVVTNARGGESYHNYGLAIDFALRGKDGEVLWDLEYDGNGNGKSDWMEVVEIAKSIGFEWGGDWEDFPDYPHLQLSFGLSLADLQRGKRPPE
>NZ_CP013653.1|WP_062495622.1|4888806_4888986_+|small-acid-soluble-spore-protein-H
MNKQRAIEISESPVMANVTYQGMQIYIQQVDAQNETARIYPLGQPENELSVPLDSLTEH
>NZ_CP013653.1|WP_062495624.1|4889336_4890566_-|MFS-transporter
MPVTETAARSVAVRTGTVYFILFAISAVHMLNDTMQAVVSALFPIFEESMGLSYAQVGWIAFTLNMTSSVMQPVVGLVSDKRPAPWMLPFGMALSMIGLAGLAFAPSFWLLLLSVVLIGLGSAIFHPEGSRVVYFAAGGRRGLAQSIYQVGGNFGQSLAPLMTIFIFVPLGQRGAAWGMLLAAAAIVVLLKVVPWYSGQLAAHGAPAKRRKPAGAEQLHAARKERRVVMFALMLLLVLVFCRSWYAAGMGNFYQFYVRDTYGLTISAAQLPLFLFMAAGVAGTFLGGILADRFGRKNMMLFSIAGAAPFAILLPHLPLAWVYPASFVLGFILQSGFSVSVVYAQELMPGKVGMASGLITGLAFGLGALGAVVLGNAADAFGLANVMLYTSFLPLIGLLSFLLPPDRRDA
>NZ_CP013653.1|WP_062495626.1|4890627_4891746_-|lactonase-family-protein
MEGINDHAGTGGRSRILYVGSYGEASEPTLHVCSFDEETGTLALVQQLAGVEHASYLAVRPGGRVLYAVSETSETSGRPGGSAAAFAIDPPTGKLAPLDGRPLTHGAHPCYISMDREGRAALVANYSGGSVALLPIGEDGRLKEAAAVVRHEGELGPNKGRQESPHPHCIVPHPEGGYAYVPDLGTDSIVIYRFDPAGLTLTKHGECAIHAGAGPRHLVFHPRLPAAYVINELDSTVTWLRADADSGKLEAGPAVSALPDGFAGESYAADIHLSPCGRFLYASNRGHDSIAVFAADQKDGTLAVIGHVPCGGRTPRNFALSPDGRWLLAASQDSDVVTVFAVDAESGNLQPNGSTLRLPKPVCVRFYEEEPS
>NZ_CP013653.1|WP_062495627.1|4892029_4892377_+|DNA-binding-protein
MNAAERERNVYEEFDVVRDILYFRVGAHHLVSFHGRNYNIKRRMSADQIRKLTADAHFFKVSSDCYVNLGKVDAIRDGIVVFRVPGADGKQIVISRRKRNQLQTLLQNRNQGTAS
>NZ_CP013653.1|WP_062495629.1|4893980_4894997_-|glycosyltransferase-family-2-protein
MDLRSGPRLAIVSPCYNEEEVLPETIMRLSGLLTEMMDEKLVAPDSFLLFVDDGSSDRTWPLIVESRRHNPLVHGLKLARNAGHQQALVAGLMSVRDRIDCAVTIDADLQDDPAIIREFVKKYKEGCDIVYGVRRSRATDTFFKRTTAIGFYRLMEWMGVNIVFNHADFRLMSKRAIDSLERFKEVNLFLRGIVPSIGFRSASVYYDRTERFAGTSKYPLRKMIAFALDGITSFSIRPIRLVTLAGFIVFLASLTAAVYALISKFTGNAVSGWTSLIVSIWLLGGMQLLALGLIGEYIGKIYKETKRRPLYIIETLLLPEGQEAAAPETMRLTERMRG
>NZ_CP013653.1|WP_062495631.1|4895178_4896471_+|hypothetical-protein
MRPAKWLSLVLAFLLLPALAGCGKTGGEGGPDGVGRPGTAGTNWPGASGIDRKLTTAYNAFGMKLLLEISEQEKHGGSVLLSPSSIAVALSMTMNGARADTLKEMSETIAGGMSPEDVNESNETLLKLLASEDPKVRVHAAQSLWAREGKPFHDEFLQTNERFYDARIEQLDFDDPGAVDTINDWVKQQTEGAIDRLIEGPIDKSTVMFLLQAIYFKGDWKTPFPEAATSMQPFRLEDGTTADVPLMSRQNELFDYLRGEGFQAVKLPYGDGRWSMIVALPDDEKTGLAGLLPQLAADPSVWTTGYEQMEGSVWLPKFRLESELELRDALKAMGMPTAFNPSLADLSGMADVPPNLYIFSVRHKSFIDVNETGTEASAATSVEVRDESARIGEPFVLRADRPFFFAIMEESSGTIVFAGTMYDPSASPDR
>NZ_CP013653.1|WP_062495632.1|4896590_4897244_-|ABC-transporter-ATP-binding-protein
MKVVEMHRVSFTYAGSSDLILQDVSLDVGQGEIVGLLGPSGSGKSTLLRLIAGLEAPTAGRIAVCGKTVADRTTFVPPERRGIGMVFQDYALFPHMTVARNIEFGLHRIPRGERKQRVRQMLELVQLPQYGSRYPHELSGGQQQRVALARALAPKPSLLLMDEPFSNLDAALKADIRRELRDILRRAEMACLFVTHDREDVEAICDRSITIDAKVQV
>NZ_CP013653.1|WP_062495634.1|4897240_4898860_-|iron-ABC-transporter-permease
MNGWTISSLIVAAAILLPVFFILVSLAQGPGENWSHIKQYVLKDAVMQSAWLALLTGLFTTGLGVGLAWLTAAYDFPLSRLFRWAFALPLAIPPYIAAYTYSAMLGYTGVVQTTLRNTFGLQLSQGWFNIMSVQGAVFIFTMFLFPYVYLIARAFLESQTGAYVENARLLGRGPWSVFWLVVLPISRPAIAGGVILVCFEVLGDYGVVSYFGISTISTAIFKTWFGMYDIASASRLAAWLMIGVLGLFLLERQLRRQRRYSATTGKSRPLVRRRLRGAGGAAACMFGAVVMLVSFVIPVAQLVVWATWTADEVWHEGFYRIIGDTVAVAIVPTALTMVAAAIVAVSVRQFGGIFGYMLAKAVTAGYSIPGAIIAIGVLAVFIKLDGWLAPVYAALRLGTGEAPLVLSLSIVMLVAAYVVRFMATGYNALEAGFEKIGPQYAEASRLLGRGRTQTFLRVELPLLKGALLSGTVLTFVEIVKELPLALLLRPFNFQTLATKTYQYASDERIHEASVPALCIVVVSLASVYLLNRIERGMEV

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Crispr_ID: NZ_CP013653_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013653_17

5000018-5000154

Orphan

Consensus_repeat	Method
CGCGCCGACGAGGGCAGGACCAAGCGGTCTCGGTGGCAGCGGCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013653_17

>merge|NZ_CP013653|17|5000018-5000154|CRISPRCasFinder
CGCGCCGACGAGGGCAGGACCAAGCGGTCTCGGTGGCAGCGGCGGCCGCCCCCCCTCACCCCAGGCGAATGCGCAATGCCCGGCTGATTTTCGCGCCGACGAGGGCGGGACCAAGCGGTCTCGGTGGCAGCGGCGGC

>NZ_CP013653|17|15|5000018-5000154|CRISPRCasFinder
CGCGCCGACGAGGGCAGGACCAAGCGGTCTCGGTGGCAGCGGCGGC	CGCCCCCCCTCACCCCAGGCGAATGCGCAATGCCCGGCTGATTTT
CGCGCCGACGAGGGCGGGACCAAGCGGTCTCGGTGGCAGCGGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013653.1\|WP_062495793.1\|5006599_5008174_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|378963
NZ_CP013653.1\|WP_062495775.1\|4990321_4991155_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377924
NZ_CP013653.1\|WP_062495785.1\|4997131_4998457_-\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
NZ_CP013653.1\|WP_062495798.1\|5009312_5010209_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP013653.1\|WP_062495773.1\|4988649_4990005_-\|dipeptidase	unknown	unknown	gnl\|CDD\|169276
NZ_CP013653.1\|WP_062497252.1\|5000953_5002273_-\|glycoside-hydrolase-family-125-protein	unknown	unknown	gnl\|CDD\|377716
NZ_CP013653.1\|WP_062497248.1\|4993321_4994383_-\|glycosidase	unknown	unknown	gnl\|CDD\|350124
NZ_CP013653.1\|WP_062495770.1\|4987632_4988601_-\|D-glycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240626
NZ_CP013653.1\|WP_062497250.1\|4998757_4999777_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380629
NZ_CP013653.1\|WP_062495777.1\|4992171_4993182_-\|zinc-dependent-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176196
NZ_CP013653.1\|WP_062495799.1\|5010322_5011183_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP013653.1\|WP_062495794.1\|5008316_5008517_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240644
NZ_CP013653.1\|WP_062495791.1\|5004877_5006503_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|119353
NZ_CP013653.1\|WP_062495801.1\|5011309_5012182_+\|phytanoyl-CoA-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|368580
NZ_CP013653.1\|WP_062495789.1\|5002734_5004618_-\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
NZ_CP013653.1\|WP_062495803.1\|5012605_5014093_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270298
NZ_CP013653.1\|WP_062495796.1\|5008531_5009320_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240644
NZ_CP013653.1\|WP_062495783.1\|4996243_4997119_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP013653.1\|WP_062495781.1\|4995417_4996257_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP013653.1\|WP_062495779.1\|4994402_4995395_-\|DUF1861-family-protein	unknown	unknown	gnl\|CDD\|378102

Protein	Function_ID	Function_description	E-value
NZ_CP013653.1\|WP_062495793.1\|5006599_5008174_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|378963	pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This family of proteins contains FAD dependent oxidoreductases and related proteins.	4.68373e-115
NZ_CP013653.1\|WP_062495775.1\|4990321_4991155_+\|hypothetical-protein	gnl\|CDD\|377924	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.	3.29316e-25
NZ_CP013653.1\|WP_062495785.1\|4997131_4998457_-\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	1.99475e-44
NZ_CP013653.1\|WP_062495798.1\|5009312_5010209_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	6.78335e-21
NZ_CP013653.1\|WP_062495773.1\|4988649_4990005_-\|dipeptidase	gnl\|CDD\|169276	PRK08201, PRK08201, dipeptidase.	0
NZ_CP013653.1\|WP_062497252.1\|5000953_5002273_-\|glycoside-hydrolase-family-125-protein	gnl\|CDD\|377716	pfam06824, Glyco_hydro_125, Metal-independent alpha-mannosidase (GH125). This family, which contains bacterial and fungal glycoside hydrolases, is also known as GH125. They function as metal-independent alpha-mannosidases, with specificity for alpha-1,6-linked non-reducing terminal mannose residues. Structurally this family is part of the 6 hairpin glycosidase superfamily.	0
NZ_CP013653.1\|WP_062497248.1\|4993321_4994383_-\|glycosidase	gnl\|CDD\|350124	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase. This subfamily contains the glycosyl hydrolase family 130 (GH130), as classified by the carbohydrate-active enzymes database (CAZY), enzymes that are phosphorylases and hydrolases for beta-mannosides, and includes Listeria innocua beta-1,2-mannobiose phosphorylase (Lin0857). hey possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. Structure of Lin0857 shows beta-1,2-mannotriose bound in a U-shape, interacting with a phosphate analog at both ends. Lin0857 has a unique dimer structure connected by a loop, with a significant open-close loop displacement observed for substrate entry. A long loop, which is exclusively present in Lin0857, covers the active site to limit the pocket size.	1.0167e-165
NZ_CP013653.1\|WP_062495770.1\|4987632_4988601_-\|D-glycerate-dehydrogenase	gnl\|CDD\|240626	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH). D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	1.29953e-173
NZ_CP013653.1\|WP_062497250.1\|4998757_4999777_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|380629	cd19974, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	2.21382e-108
NZ_CP013653.1\|WP_062495777.1\|4992171_4993182_-\|zinc-dependent-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176196	cd08234, threonine_DH_like, L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.	1.35358e-153
NZ_CP013653.1\|WP_062495799.1\|5010322_5011183_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	6.23048e-21
NZ_CP013653.1\|WP_062495794.1\|5008316_5008517_-\|hypothetical-protein	gnl\|CDD\|240644	cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	2.48695e-17
NZ_CP013653.1\|WP_062495791.1\|5004877_5006503_+\|hypothetical-protein	gnl\|CDD\|119353	cd02874, GH18_CFLE_spore_hydrolase, Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.	4.19229e-83
NZ_CP013653.1\|WP_062495801.1\|5011309_5012182_+\|phytanoyl-CoA-dioxygenase-family-protein	gnl\|CDD\|368580	pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH). This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins, ectoine hydroxylases and a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalyzing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterized by the accumulation of phytanic acid in plasma and tissues.	7.0956e-27
NZ_CP013653.1\|WP_062495789.1\|5002734_5004618_-\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
NZ_CP013653.1\|WP_062495803.1\|5012605_5014093_-\|extracellular-solute-binding-protein	gnl\|CDD\|270298	cd13580, PBP2_AlgQ_like_1, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold. This subgroup includes uncharacterized periplasmic-binding proteins that are closely related to high molecular weight (HMW) alginate bining proteins (AlgQ1 and AlgQ2) found in gram-negative soil bacteria. The HMW alginate uptake system is composed of a novel pit formed on the cell surface and a pit-dependent ATP-binding cassette (ABC) transporter in the inner membrane. The transportation of HMW alginate from the pit to the ABC transporter is mediated by periplasmic HMW alginate-binding proteins (AlgQ1 and AlgQ2). Alginate is an anionic polysaccharide that is made up of alpha-L-mannuronate and its 5'-epimer, alpha-L-guluronate. Alginate is present in the cell walls of brown seaweeds, where it forms a viscous gum by binding water. Alginate is also produced by two bacteria genera Pseudomonas and Azotobacter. AlgQ1 and AlgQ2 belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. However, unlike other bacterial periplasmic-binding proteins that deliver small solutes to ABC transporters, AlgQ1/2 can bind a macromolecule and may have specificity for either sugar or a certain type of polysaccharide.	1.16122e-115
NZ_CP013653.1\|WP_062495796.1\|5008531_5009320_-\|hypothetical-protein	gnl\|CDD\|240644	cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	5.1211e-78
NZ_CP013653.1\|WP_062495783.1\|4996243_4997119_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.5685e-74
NZ_CP013653.1\|WP_062495781.1\|4995417_4996257_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	6.00925e-67
NZ_CP013653.1\|WP_062495779.1\|4994402_4995395_-\|DUF1861-family-protein	gnl\|CDD\|378102	pfam08950, DUF1861, Protein of unknown function (DUF1861). This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function.	3.54821e-180

>NZ_CP013653.1|WP_062497250.1|4998757_4999777_+|substrate-binding-domain-containing-protein
MKSKVTMQDIADRLKLSKNSVSQALTGKPGVSEATRRLVIETAEQMGYVYGKDRKRRQPNAPNGSIALIASDFAFAQKNFFGEIYLSIEREVRDRGYELLIQSVNQTAAAELRLPPFLENRAVAGVLTLSHITTEYVNAVIDTGIPTVLIDHHHPDIAADCVLTNNRFGAYAAVRHLLELGHRDIGYIGNIDFSPSYYERLDGFRLAMHEYGVTPNEEWIVDRALEDHSYIINLVKQLENYPTAWFCVNDGLGFMLNSALQQHGFSVPDDVSVVSFDNGYLSRIATPPMTTVNVDLELFGSCAVELLLDRIAHPNKPLTETLLQAKLIVRESTAAPKRA
>NZ_CP013653.1|WP_062495785.1|4997131_4998457_-|carbohydrate-ABC-transporter-substrate-binding-protein
MKKNVALLLLVGMIVAVLSACSTGQGGKAEDSGEAEGGVTTIEFWAAPNPTQQAYWQEMAKAYEAENPNVKINVSAIKESPSSEASIQAAIAGRSAPTMSENINRGFAAQLAASKALVPLDTLPGFQDILSSRNMTETIEPWTFADGHQYVLPIYSNAMLFGWRIDILKDLGYEQPPQTYGEILELTKKLKAAHKDKYLWAKADLIDPTAWKRWFDFFMLYNAASGGNKFIEGDSFVGDEAAGVETLTFIDNLRKENGILAQNVTDPFETGTSVFTDLGPWTFTMWKEKFPEMKYNETFALTMPPVPDGKNPAESKTFADTKGIVIYADATEAQQKAAVDFLKWVYSKPENDLKWFEQTMLPPARDDLSTNEAFKAILDANPQLKPYAENVPNAIPPMDNAKYNELQTLIGQEALNKVVRGEISPADGWANMKKAIEDALK
>NZ_CP013653.1|WP_062495783.1|4996243_4997119_-|sugar-ABC-transporter-permease
MERQNNRLGWLFTSPYLIYSIVFFFIPLIWSFYLSFTDWDLIAPEYHFVGFENFMDALRSPSVHAAFWVTYKFMLVFIPIVTVMALTVAVLVNGLPRFKSLFLIGFFLPYLSSGVVSALIVKGLLSYNSPVNTFLRSLGITIDWLGTPMSALFVIGIILAWKFTGYYALILTAGLSSIDKEVYEAAAIDGVTDRQRFWRITLPLLYPSLYTTLILAFGVTFGIFTEVYQLTGGGPNFATNTWQMEIFNQAFKNLQAGYASAVALLASLATFVSIYIVRKLLELWGKRYGWN
>NZ_CP013653.1|WP_062495781.1|4995417_4996257_-|carbohydrate-ABC-transporter-permease
MVGTNRNRKLRLAIRYIVALVLLLVLVYPYLYMVLNSLADWTQIDRKLFPTKYTFKSYEWLFSGGETGMSRPWMTAFMNSIIVSLASTALMMLFGVMVAYALSKLRFRGRDFTNNFVLFHMFFPAIILLIPTFLTVQRIGLYDTYLGMILPKAVSLWAIFMYTNFFKAIPDAFIEAAKLDGASDWKIMYRIMLPMSKSITTVVFLFLLMERWTELLWDMIVVRSDGLLTLNVLLSQMFGPYGTYPGPLYAASVLLTLPIILIFIIFGKKFQEGMQFNLK
>NZ_CP013653.1|WP_062495779.1|4994402_4995395_-|DUF1861-family-protein
MNSLSAHTAAQTCASLLEEYRNAGERAGGAQKLKFAGVDGKDVYNIAAPFRDDGELVIAGRVESRDSEHSDVVFFTERDGVWVPREGAPVLRLQDPFHTVIGGNLVLGGVEVFPDPGRPGYLMWRTVFYRGSRIAELERFFEGPDGMKDIRLVELADGSVGVFTRPQGEKGGRGKIGFVRIGSLEELTVKAIEEAPLLDAHFTDEEWGGANEAHLLAGGLIGVLGHIACYDDQGNRHYYPIVFVYHPLTGERTALKMIAERADFVPGPSKRPDLEDVVFSGGLIRHGDGTATLYAGVGDAEAQRIEIRDPFAAFENSPAGPGIKQQEQKS
>NZ_CP013653.1|WP_062497248.1|4993321_4994383_-|glycosidase
MHVYRYEENPLITPADVTPHREDFEVIGAFNAGIAKYGDEIIMLLRVAERPISPKPGIVLAPVYDAANDRLDLIELREDDERYDFSDPRVIRNRSESATFQYLTSLSYLRIARSRDGRHFTVDDKPFIYPSQPLESFGIEDPRITQIGDTYYIYFSAVSPVGVGESLVSTTDFRTVTHHGMIFSPDNKDVLIFPEKIGGKYYALHRPTTKSVGNPEIWIAESDNLLQWGNHRHLLGLRPGMWDSGRIGGGAVPIRTERGWLELYHGATKEHRYCMGAVLLDLEDPSKVIARSNKPILEPEAPYEKEGFFGDVVFSCGALVEGDIVKMYYGVADTSMAAAELSLREILDSLEKV
>NZ_CP013653.1|WP_062495777.1|4992171_4993182_-|zinc-dependent-alcohol-dehydrogenase-family-protein
MKAAVLHGVGQMAVERRNEPSPGPGEVTVRVRAAGICGTDQHIYHGHPGSAAVTPPIVLGHELAGIVAALGEGVEGLKVGDRVSVDPNIYCGICRYCRDGRAHLCDRLAAVGVTRDGGMGELCVVPAANCYVVPDTVSFAEAALAEPLGCVLHGFRKLTIRPDYTVLIVGGGFIGQLFLQLAKASGARRIVVSEPDSGKYETLRKLGADETVNPLDAAAAAALASTADVVLECVGRPDSMTLAVEAAAKGAQVLLFGVAAPTTEIGIRPYDIFAKELRIFGSFINPYTHPDALALIDAGIVRVEPLVTHRFALDDMPAVMADYPRLKVGKGLIVYE
>NZ_CP013653.1|WP_062495775.1|4990321_4991155_+|hypothetical-protein
MKKTVLLLNALLFIFLLRMPFSVSAAPVKTPVVLQINDYYVLYTFPKAPYVDQNNRLMIPLRAISELLGSNVKYEAKHKRATIEKDGKKLVVYVGSKEIEINGTIQMMDTVPTIHESAMFVPLRALIDSFELPVKWDKSTGVVHVESDAMKNNERIVHFEDSDVPPKIADNNAILPISYRLEMSKPGKGKLTSGTITVEARNISGKAILEGKEDLHLVYFFDHTMATEMDTSTTDVEASRERPARAADERFMLEDAFASGQYNENLQYILALGRTFE
>NZ_CP013653.1|WP_062495773.1|4988649_4990005_-|dipeptidase
MDYAPYFAERRDAHLRELKEWLSIPSISAQSVHKEDVRRAAEWLADALKRAGLENVEIHPTAGHPIVYADHLHAPGKPTVLIYGHYDVQPVDPLHLWQTPPFEPDIRDNKLYARGATDDKGQLFLHIKAIEAILSTEQALPVNVKFCVEGEEEIASGNLHPFIEAHKDKLAADAVLISDTELLGPDKPAICTGLRGLCSLEVSVRTANTDLHSGTYGGGVPNALHALVSLLDSLHDKRGRVAVDGFYDDVSELTDEMRAEFAKKGIDEEKLKRTLELDALYGEEGYTFAERVGARPTLEINGMYGGFQGEGTKTVIPCEAHAKITCRLVGHQDPQDILDKVERHIRKHTPPGAKVSVVQREKGRPYTIDPSHPLLRQAGDAYERVYGARPVFTRDGGSISIVEAFARVLSAPVVLMGFGLPTENLHAPNEHFHLDNFDKGLLTLVEFLKRF
>NZ_CP013653.1|WP_062495770.1|4987632_4988601_-|D-glycerate-dehydrogenase
MKPKVFIDRPLPAEVVAYIAEHCEYEQWDSARPIPRETLLEKVADADGLFTSSSAIDAELLSRAKRLKIVSSMSVGYNHFDLSAMKARGVLGTNTPHVLDETVADLAFALILGTARRVAELDRYVKQGKWRKEDNEVLFGTDVHHATLGIIGMGRIGEAIARRGKLGFGMEVVYYNRNRKPDTEKELGVQYLPFEQLLGTADFIVMMTPLTRETAGMIGRAQFALMKPSAIFINVSRGQTVDETALVDALREGRIRAAGLDVYAQEPIPKDHPLLSLPNVLTLPHIGSATAKTRFDMAMLAARNLVAGVTGRTPPNIVAELK
>NZ_CP013653.1|WP_062497252.1|5000953_5002273_-|glycoside-hydrolase-family-125-protein
MEQFRLPKIPMPKLELPQAVQAVLAEAEEKLAHRPKLLQLFKNCFPNTLETTTKLLDDGTTFVITGDIPAMWLRDSVEQVIHYVPLAKDDPDLQRIIGGLIKRHIAYIQIDPYANAFNESANDWHWNATDETDMSPWVWERKFEIDSLCFSMRLAYLYWKETGLTDIFDAGFKAAMRTIYSLFRTEQRHFELSPYRFTRNNGIPTDSLRNNGLGMPVNYTGMVWSGFRSSDDACDFHYNIPGNMFAVVALRYMQEFAEWVFRDLEFLRELKELEQEIDHGIRLYGIYRHPEFGPIYAYETDGFGNYCLMDDAGTPGLMSIPYLGYVSADDPVYQNTRRFALSKENPFYFEGKAARGIGSPHTPPGYIWHMALSMQGLTASSPEEKLEMIAMLEATDADTGYMHEGFHADDPGKFTRSWFAWSNSLFSQLVYRAMKEGLL
>NZ_CP013653.1|WP_062495789.1|5002734_5004618_-|molecular-chaperone-HtpG
MAKKQFKAESKRLLEMMINSIYTQREIFLRELISNASDAIDKIYYKALTDDNLTFNKDDYYIKIKADKANRTLTISDTGIGMTKEELEKNLGVIAKSGSLAFKMENEAKDGHNIIGQFGVGFYSAFMVADKVTVISKALGSDEAYKWESSGADGYTVEPAEKAEVGTDIILKIKENTEDDRYDEFLEEYRLRAIIKKYSDFIRYPIKMDVTKTRPKEGVENEFEEYREEETINSMVPIWRKNKNELKPEDYDNFYAEKRYGFDKPLAHIHIKADGAVNYNAILFIPEQPPFDYYTKEYEKGLELYSSGVLIMNKCPDLLPDYFSFVKGMVDSEDLSLNISREMLQHDRQLTLIAKNIKNKVKSQLQTMLKEEREKYEKFYQAFGRQLKFGVYSDYGTNKDMLQDLLLFYSSKEKKLVTLDEYVSRMPEDQKYIYYAAGDSIERLAKLPQTELVADKGYEILYLTDDIDEFAVKMLMSYKEKEFKSVSSGDLGIDEADSDADKSDAEDSGNKELFEAMKNILGDKVKKVKASKRLKSHPVCLTAEGELSIEMEKVLRAMPNGQNVKADKVLEINVNHDVFQSLKAAHQHDPEKLKLYTGLLYNQALLIEGLPVDDPVEFTNDICKMMV
>NZ_CP013653.1|WP_062495791.1|5004877_5006503_+|hypothetical-protein
MNTRSYIFIFALIAACLFANAGFAAPAAGKPPFDDIAGSYAEDAIAALYAKRIVGGVGDRRFAPERAVTRAEFAAMMLRALHLDPVGNAIPAFFDVRRGAWYYGDVHGAVNLGIVGGTGPRTFEPGRPVTRQEAAVIAARALRLHGEASGRTGLSYADAERIASWAASSVAATAEAGLMQGYAGKFRPLRTISRAEAAVLLYRIVEMPGWKAQFAAEPDAGVQLGWLYEDADRQFRNMTINAVVNTISPRWFFITATGGTTGQADPALIALAHEQGKRVWPLVGNRFDREMTHLVLTDPKRSETLVRRFADIVQTYRLDGLNLDFENVDPADRDAFSSFVRETARALHAHGAELSVCVPPDLETDWSEPFDYAALAAAADYIVLMGYEEHWNGSPEPGSVSSLPWVERHVRKLVRQIPAGQVILGLPFYTRDWSRQNGRTVSEDLTLAEQNRRLAEVKPAVRWDETWGQYTAVYNRGGTKHSIWAEDSRSLSLKYMAGAGFGIGGNAYWHIGGESPDVWASLGNAIRYGGYDFTRRTAALR
>NZ_CP013653.1|WP_062495793.1|5006599_5008174_-|FAD-dependent-oxidoreductase
MERHLHADIVIIGGSTGGCAAALAASRAGKRVIMTEETDWIGGQLTSQMVPPDEHPWIESFGCTASYRAFRNGVRDYYKRHFAVLPAARANPHFNPGNASVSRIAHEPRAALAVLRDMLAPYIHRGSLTIMEQHKAVRVETAGDEIRAVHVRSSLTGDTAVLTGAYFLDATDEGDLLPLSGTEYVTGAESAAETGEPHALDGAADLADMQAITWCFAVDYIEGEDYTIRKPEQYEFWKQYRASFWPDRQLSWTGLVPHTLEPIRYSFFPDGKSFSLWTYRRIIDRSQFAPGAFESDVTVVNWPQNDYWLGPIIDVDEEERRKHLEDARQLSLSLLYWMQTEAPRPDGKAGYPGLRLRGDIAGTQDGLAKSPYIRESRRIKAETTVVEQDLSPECRKDGLAADYFDSVGIGAYRIDLHPSTALRTYIDISSLPFQIPLGSLIPVRMNNLLAACKNIGTTHITNGCYRLHPVEWNIGEAAGYLASFCIDRGMRPRAVRADGVSLGDYQTMLAAAGVELKWPSPRAL
>NZ_CP013653.1|WP_062495794.1|5008316_5008517_-|hypothetical-protein
MTDPEPPPSGHWLRTHPRVILTGHIAGAVNNGLLAIGDFIADELERYRSGEALTGEVDLSRLHLLA
>NZ_CP013653.1|WP_062495796.1|5008531_5009320_-|hypothetical-protein
MNKIAMLLNPAVRSRVFAAAALERMSRLANELAVPAEPLSPEGSAALIRGAEAAVTSWMSPQLNEELLDEAPDLKIVLHAAGSVKPVVSEALQARGIRVVSAASVLSRGVAETALGLTIVSLKNIWDIADRTRDGDWWNNRADETRSRIRELFGVTIGCIGAGQAGRRYLELLRHFRVDVLLYDPTVSAEQAVRLGARSVSLEELMAASDVVTVLAPEIPATYHMINERTLSAMKDDAILINLARGSLVDEQALRRRLSAAA
>NZ_CP013653.1|WP_062495798.1|5009312_5010209_-|helix-turn-helix-transcriptional-regulator
MLNGGASAIRTGKAGFNHCYVDRAYTLTHLLLHQVQDRCCYEADGRLADHGSLLVYMLSGHGAIAIDGHELPLPERHYIWLNPGSSYRIAAAKGSRSPMRFVSLELQPTARGRHLLDALAQAGDGRAVRDVAGLDELLFEIMHELRTEPPHLPLMLDSLLNRLLIMLERQLPGSRAAADERKKAYGKKELVYQIVQYLDRHAAEISELGQLADKLGYSYSYMSHAFREEMGISLQEYWAKRRMMKAMNSLQSGRSSITQISEHLHYQSVHSFSKAFKKMTGFTPTEYQSLYGRNGEYE
>NZ_CP013653.1|WP_062495799.1|5010322_5011183_-|AraC-family-transcriptional-regulator
MNGELSIRPFVRVAHYYRFPIERNASESSRIGYCYAFHLVREGRGRISVPGESRTVKKGDLIFFPPSLRHSFYSDPAKPLATYNVYCELWADKPLRTDIHLVWNDADFHPAYLTSMRPDAGPDRLPLVQSLQHREALMTIFAEIVRHHQSEAAASEEIAASLLKAFVLELVQQARQPSYADRRIQAVIERIDREADARAREDQWLDMTGLRKSQFHQLFKQATGMPPKAYLTRAVMKRAAVSLTESGRSITDIASDLGYSSIHHFTRQFTQFYGTPPTEYRKRQNN
>NZ_CP013653.1|WP_062495801.1|5011309_5012182_+|phytanoyl-CoA-dioxygenase-family-protein
MRSGSLTKEQIDFYNEEGYVVLPRLLTDEDMVPAIEAMNRKVSMIAEELKRANLITDTLEHRPFKYRLAELFAGLSSDEFLKYGRSWRDRLPGYFHLMSNPKILDAVESLIGGEIFANPVYNTRPKIPKVAAGAVPWHQDKSYWPDANSNPVITVWIPLVDATETNGCLHIKPGTHRKRLLKWHHETESGTGYTALTKRQLGNSPTVALPVPAGSAILFNDRCLHMSTPNYSDEVRWSVDLRYQPTDQDPMTSHGVGFLARSYKHPERVATLEDWLAGRPEHEPVIQGRR
>NZ_CP013653.1|WP_062495803.1|5012605_5014093_-|extracellular-solute-binding-protein
MKQRLLIGIILIVMTAMLAACGGDKAGDGASGGESGGGGAAAEKPVLRQLGFQRNFDPNQDPVAAMLEEKTGYKVEYETLPLENPDDKLNLLMANNEPYDILKLSGSQYNRLAVQGALEPLGELIEQYGPNIKSSVPQEYFDNAMVDGQIYGIPEKHPRGFVGSSLAIRQDLLDELNLEVPTTIDEFYNLLVAIKEKKGIVPLTGFESIIPEISGAFGVVTTFEVENGKLIHRLESEGMKQYLAFMNKLYQEGLIDPEWPVNKSETVQQKFTTGKAGVTTYGWGVASAVTTALHKNFPDAKITLIKSLTGPDGKVGNWVQGGGVSWYIAVPKASKNKEEAIKYINAKLEKELFKNLAIGEEGVHHKVENGELFPILPAFNDERGSADWFMTGTVSADYEEQWLLRVRKDPVLYATFEDIQTQLSVSRSDPTLLAPPLPVVANNLQKLTKAENDYVIKIIAGAESLDNYDKFVESWKADGGSDMLTELSAWYEQSK

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Crispr_ID: NZ_CP013653_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013653_18

5242898-5244096

Unclear

Consensus_repeat	Method
GCGGCGTCACAGCATTAAACAG	CRT
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	PILER-CR
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	CRISPRCasFinder

16 spacers

cas2,cas5,cas7,cas8b3,cas3,cas6,WYL

The CRISPR arrays of NZ_CP013653_18

>merge|NZ_CP013653|18|5242898-5244096|CRT,PILER-CR,CRISPRCasFinder
AGGCCGTTACAGCAATAAACAGACGCGGTGTAGCCCGCCCCTTCCAGGTCAGTAAGCAGTGCTCAACGCCTCGCGGCGTCACAGCAATAAACAGCCAGGATGTTCACCGTTCCGTCAGTTTTCTTTTGCAGTGCTCAACGCCTTGCGGCGTCACAGCAATAAACAGTACTAACCTCAGCCGAACGTATCGCCCGGCGCGAAGTTGTGCTCAACGCCTTGCGGCGTCACAGCAATAAACAGTCGAGAAGGCGGCCTTTACCGTCGGCACTCGGTGCTTGCGCGTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAGTGTCCACGATTGAAAGTGGAAATGTCCCTGTTGATGCTTGGTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAGGAGCAGATCAAGGACCAGCTCTATGATGAAGTCGCCAAGTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAGGAAGATTCACATCGTCAAGGATTTGTTGGGACGTTGGGTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAGACGGGTGTATTGAGGTTGATGTCAGTAACACCGATAAGTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAGTCACACGTATCCACAACGTTACCTCACGCTATCCCTAGTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAGTATGCCGGGCGCGCGATTTGCGTTCGAACGTAACGAGTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAGGATGGTATCGACGTATGTGCGGTAATAAATACGGTCAGAGTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAGCCGAGACTCATTCCGTCAAGAAACCGAAATGCATCTGAGTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAGAAATGCGGTGCGACCGAACGCGGCGTTACGGTTGAAGTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAGATTCGTACCGGGAGCTTCCTATCCGCCGCCCGCCGAGTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAGTTCAGCCACCAATGCATCTAGTTCCCACCCCGGCTGGTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAGCCCGAGTGAACGTATCAGGATCACCAGGCCGGACCGTCCTGTGCTCAACGCCTTGCTGCGTCACAGCATTAAACAG

>NZ_CP013653|18|8|5242898-5244096|CRT
AGGCCGTTACAGCAATAAACAG	ACGCGGTGTAGCCCGCCCCTTCCAGGTCAGTAAGCAGTGCTCAACGCCTC
GCGGCGTCACAGCAATAAACAG	CCAGGATGTTCACCGTTCCGTCAGTTTTCTTTTGCAGTGCTCAACGCCTT
GCGGCGTCACAGCAATAAACAG	TACTAACCTCAGCCGAACGTATCGCCCGGCGCGAAGTTGTGCTCAACGCCTT
GCGGCGTCACAGCAATAAACAG	TCGAGAAGGCGGCCTTTACCGTCGGCACTCGGTGCTTGCGCGTGCTCAACGCCTT
GCGGCGTCACAGCATTAAACAG	TGTCCACGATTGAAAGTGGAAATGTCCCTGTTGATGCTTGGTGCTCAACGCCTT
GCGGCGTCACAGCATTAAACAG	GAGCAGATCAAGGACCAGCTCTATGATGAAGTCGCCAAGTGCTCAACGCCTT
GCGGCGTCACAGCATTAAACAG	GAAGATTCACATCGTCAAGGATTTGTTGGGACGTTGGGTGCTCAACGCCTT
GCGGCGTCACAGCATTAAACAG	ACGGGTGTATTGAGGTTGATGTCAGTAACACCGATAAGTGCTCAACGCCTT
GCGGCGTCACAGCATTAAACAG	TCACACGTATCCACAACGTTACCTCACGCTATCCCTAGTGCTCAACGCCTT
GCGGCGTCACAGCATTAAACAG	TATGCCGGGCGCGCGATTTGCGTTCGAACGTAACGAGTGCTCAACGCCTT
GCGGCGTCACAGCATTAAACAG	GATGGTATCGACGTATGTGCGGTAATAAATACGGTCAGAGTGCTCAACGCCTT
GCGGCGTCACAGCATTAAACAG	CCGAGACTCATTCCGTCAAGAAACCGAAATGCATCTGAGTGCTCAACGCCTT
GCGGCGTCACAGCATTAAACAG	AAATGCGGTGCGACCGAACGCGGCGTTACGGTTGAAGTGCTCAACGCCTT
GCGGCGTCACAGCATTAAACAG	ATTCGTACCGGGAGCTTCCTATCCGCCGCCCGCCGAGTGCTCAACGCCTT
GCGGCGTCACAGCATTAAACAG	TTCAGCCACCAATGCATCTAGTTCCCACCCCGGCTGGTGCTCAACGCCTT
GCGGCGTCACAGCATTAAACAG	CCCGAGTGAACGTATCAGGATCACCAGGCCGGACCGTCCTGTGCTCAACGCCTT
GCTGCGTCACAGCATTAAACAG

>NZ_CP013653|18|7|5242956-5244096|PILER-CR
GTGCTCAACGCCTCGCGGCGTCACAGCAATAAACAG	CCAGGATGTTCACCGTTCCGTCAGTTTTCTTTTGCA
GTGCTCAACGCCTTGCGGCGTCACAGCAATAAACAG	TACTAACCTCAGCCGAACGTATCGCCCGGCGCGAAGTT
GTGCTCAACGCCTTGCGGCGTCACAGCAATAAACAG	TCGAGAAGGCGGCCTTTACCGTCGGCACTCGGTGCTTGCGC
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	TGTCCACGATTGAAAGTGGAAATGTCCCTGTTGATGCTTG
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	GAGCAGATCAAGGACCAGCTCTATGATGAAGTCGCCAA
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	GAAGATTCACATCGTCAAGGATTTGTTGGGACGTTGG
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	ACGGGTGTATTGAGGTTGATGTCAGTAACACCGATAA
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	TCACACGTATCCACAACGTTACCTCACGCTATCCCTA
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	TATGCCGGGCGCGCGATTTGCGTTCGAACGTAACGA
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	GATGGTATCGACGTATGTGCGGTAATAAATACGGTCAGA
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	CCGAGACTCATTCCGTCAAGAAACCGAAATGCATCTGA
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	AAATGCGGTGCGACCGAACGCGGCGTTACGGTTGAA
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	ATTCGTACCGGGAGCTTCCTATCCGCCGCCCGCCGA
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	TTCAGCCACCAATGCATCTAGTTCCCACCCCGGCTG
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	CCCGAGTGAACGTATCAGGATCACCAGGCCGGACCGTCCT
GTGCTCAACGCCTTGCTGCGTCACAGCATTAAACAG

>NZ_CP013653|18|16|5242956-5244096|CRISPRCasFinder
GTGCTCAACGCCTCGCGGCGTCACAGCAATAAACAG	CCAGGATGTTCACCGTTCCGTCAGTTTTCTTTTGCA
GTGCTCAACGCCTTGCGGCGTCACAGCAATAAACAG	TACTAACCTCAGCCGAACGTATCGCCCGGCGCGAAGTT
GTGCTCAACGCCTTGCGGCGTCACAGCAATAAACAG	TCGAGAAGGCGGCCTTTACCGTCGGCACTCGGTGCTTGCGC
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	TGTCCACGATTGAAAGTGGAAATGTCCCTGTTGATGCTTG
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	GAGCAGATCAAGGACCAGCTCTATGATGAAGTCGCCAA
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	GAAGATTCACATCGTCAAGGATTTGTTGGGACGTTGG
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	ACGGGTGTATTGAGGTTGATGTCAGTAACACCGATAA
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	TCACACGTATCCACAACGTTACCTCACGCTATCCCTA
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	TATGCCGGGCGCGCGATTTGCGTTCGAACGTAACGA
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	GATGGTATCGACGTATGTGCGGTAATAAATACGGTCAGA
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	CCGAGACTCATTCCGTCAAGAAACCGAAATGCATCTGA
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	AAATGCGGTGCGACCGAACGCGGCGTTACGGTTGAA
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	ATTCGTACCGGGAGCTTCCTATCCGCCGCCCGCCGA
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	TTCAGCCACCAATGCATCTAGTTCCCACCCCGGCTG
GTGCTCAACGCCTTGCGGCGTCACAGCATTAAACAG	CCCGAGTGAACGTATCAGGATCACCAGGCCGGACCGTCCT
GTGCTCAACGCCTTGCTGCGTCACAGCATTAAACAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013653.1\|WP_160327854.1\|5248175_5249405_-\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	cas8b3	cd09713_cas8b3_CAS-I-B	gnl\|CDD\|132524
NZ_CP013653.1\|WP_062496152.1\|5252438_5253356_-\|transcriptional-regulator	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_CP013653.1\|WP_062496148.1\|5249401_5251723_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|273707
NZ_CP013653.1\|WP_062496154.1\|5253752_5254604_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP013653.1\|WP_062496129.1\|5238628_5240242_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270299
NZ_CP013653.1\|WP_062496120.1\|5231095_5233708_-\|transglutaminase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376628
NZ_CP013653.1\|WP_062496157.1\|5254748_5256746_+\|glycoside-hydrolase-family-127-protein	unknown	unknown	gnl\|CDD\|226063
NZ_CP013653.1\|WP_082655689.1\|5241204_5242167_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226666
NZ_CP013653.1\|WP_062496114.1\|5227347_5228322_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP013653.1\|WP_062496124.1\|5234774_5236160_-\|alpha-L-fucosidase	unknown	unknown	gnl\|CDD\|376461
NZ_CP013653.1\|WP_062496131.1\|5240280_5241189_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP013653.1\|WP_062496116.1\|5229240_5229912_-\|SOS-response-associated-peptidase	unknown	unknown	gnl\|CDD\|376837
NZ_CP013653.1\|WP_062496140.1\|5247893_5248133_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013653.1\|WP_062496138.1\|5246947_5247874_-\|DevR-family-CRISPR-associated-autoregulator	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NZ_CP013653.1\|WP_062496150.1\|5251719_5252364_-\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	cas6	cd09703_cas6_CAS-I:CAS-III	gnl\|CDD\|370559
NZ_CP013653.1\|WP_062496122.1\|5233715_5234738_-\|carbohydrate-binding-family-9-like-protein	unknown	unknown	gnl\|CDD\|187678
NZ_CP013653.1\|WP_062496127.1\|5236254_5238555_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP013653.1\|WP_062496133.1\|5244350_5244644_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NZ_CP013653.1\|WP_062496118.1\|5230037_5231075_-\|glycoside-hydrolase-family-18-protein	unknown	unknown	gnl\|CDD\|119365
NZ_CP013653.1\|WP_062496136.1\|5246285_5246951_-\|CRISPR-associated-protein-Cas5	cas5	cd09688_cas5_CAS-I-B	gnl\|CDD\|187819

Protein	Function_ID	Function_description	E-value
NZ_CP013653.1\|WP_160327854.1\|5248175_5249405_-\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	gnl\|CDD\|132524	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the N-terminal region or upstream gene; the C-terminal region is described by TIGR03486. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.	6.31363e-22
NZ_CP013653.1\|WP_062496152.1\|5252438_5253356_-\|transcriptional-regulator	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	5.68709e-49
NZ_CP013653.1\|WP_062496148.1\|5249401_5251723_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	3.8558e-38
NZ_CP013653.1\|WP_062496154.1\|5253752_5254604_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	1.72688e-20
NZ_CP013653.1\|WP_062496129.1\|5238628_5240242_-\|extracellular-solute-binding-protein	gnl\|CDD\|270299	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold. This subgroup includes uncharacterized periplasmic-binding proteins that are closely related to high molecular weight (HMW) alginate bining proteins (AlgQ1 and AlgQ2) found in gram-negative soil bacteria. The HMW alginate uptake system is composed of a novel pit formed on the cell surface and a pit-dependent ATP-binding cassette (ABC) transporter in the inner membrane. The transportation of HMW alginate from the pit to the ABC transporter is mediated by periplasmic HMW alginate-binding proteins (AlgQ1 and AlgQ2). Alginate is an anionic polysaccharide that is made up of alpha-L-mannuronate and its 5'-epimer, alpha-L-guluronate. Alginate is present in the cell walls of brown seaweeds, where it forms a viscous gum by binding water. Alginate is also produced by two bacteria genera Pseudomonas and Azotobacter. AlgQ1 and AlgQ2 belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. However, unlike other bacterial periplasmic-binding proteins that deliver small solutes to ABC transporters, AlgQ1/2 can bind a macromolecule and may have specificity for either sugar or a certain type of polysaccharide.	5.45674e-124
NZ_CP013653.1\|WP_062496120.1\|5231095_5233708_-\|transglutaminase-domain-containing-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	3.10186e-16
NZ_CP013653.1\|WP_062496157.1\|5254748_5256746_+\|glycoside-hydrolase-family-127-protein	gnl\|CDD\|226063	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP013653.1\|WP_082655689.1\|5241204_5242167_-\|sugar-ABC-transporter-permease	gnl\|CDD\|226666	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].	1.03766e-127
NZ_CP013653.1\|WP_062496114.1\|5227347_5228322_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	6.57646e-113
NZ_CP013653.1\|WP_062496124.1\|5234774_5236160_-\|alpha-L-fucosidase	gnl\|CDD\|376461	pfam01120, Alpha_L_fucos, Alpha-L-fucosidase.	2.45619e-100
NZ_CP013653.1\|WP_062496131.1\|5240280_5241189_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.11397e-66
NZ_CP013653.1\|WP_062496116.1\|5229240_5229912_-\|SOS-response-associated-peptidase	gnl\|CDD\|376837	pfam02586, SRAP, SOS response associated peptidase (SRAP). The SRAP family functions as a DNA-associated autoproteolytic switch that recruits diverse repair enzymes onto DNA damage. We propose that the human protein Q96FZ2:UniProtKB, the eukaryotic member of the SRAP family, which has been recently shown to bind specifically to DNA with 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxycytosine, is a sensor for these oxidized bases generated by the TET (tetrahedral aminopeptidase of the M42 family) enzymes from methylcytosine. Hence, its autoproteolytic activity might help it act as a switch that recruits DNA repair enzymes to remove these oxidized methylcytosine species as part of the DNA demethylation pathway downstream of the TET enzymes.	3.63726e-72
NZ_CP013653.1\|WP_062496138.1\|5246947_5247874_-\|DevR-family-CRISPR-associated-autoregulator	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	3.9642e-35
NZ_CP013653.1\|WP_062496150.1\|5251719_5252364_-\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	gnl\|CDD\|370559	pfam09559, Cas6, Cas6 Crispr. The Cas6 Crispr family of proteins averaging 140 residues are characterized by having a GhGxxxxxGhG motif, where h indicates a hydrophobic residue, at the C-terminus. The CRISPR-Cas system is possibly a mechanism of defense against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	1.06972e-39
NZ_CP013653.1\|WP_062496122.1\|5233715_5234738_-\|carbohydrate-binding-family-9-like-protein	gnl\|CDD\|187678	cd09620, CBM9_like_3, DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily may co-occur with various other domains.	9.09469e-70
NZ_CP013653.1\|WP_062496127.1\|5236254_5238555_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.50487e-25
NZ_CP013653.1\|WP_062496133.1\|5244350_5244644_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	1.73996e-18
NZ_CP013653.1\|WP_062496118.1\|5230037_5231075_-\|glycoside-hydrolase-family-18-protein	gnl\|CDD\|119365	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.	2.65839e-118
NZ_CP013653.1\|WP_062496136.1\|5246285_5246951_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187819	cd09688, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	4.93237e-48

>NZ_CP013653.1|WP_082655689.1|5241204_5242167_-|sugar-ABC-transporter-permease
MKTLLTGGTVRKPEQGKQANGKWWKRIVRNWELYLFIAPAFFYFLIFCYGPMYGIQIAFKNYIPTKGFLGSPWVGFDHFVRFFNSYYFWDLLWNTLSISLYELAVGFPIPIILALAFNELKNGFFKRLAQTVTYAPHFISVVVMAGMIITFLSPSTGIIIHMLEWLGLEAPQFLTDPRWFKTMYVFSGVWQSAGWGTIIYLAALSGVDPQLHEAAIIDGASRFQRVRHINIPTLVPTMTILLILNMGSLLGVGFEKILLLQNPLNMESSDVISTFVYRSGLVNAQYSFSTAIGLFNSVVNAILLVVVNQIVRRTNEHSLW
>NZ_CP013653.1|WP_062496131.1|5240280_5241189_-|carbohydrate-ABC-transporter-permease
MISAVKETKRDKLFLICNYIFVFLAFVIVLYPLIYIVSASVSDPKFVGSGEMWLWPKGITFEGYQRVFENSAIWRGYRNTILYTVVGTLINLIVTLPAAYALSRKDFVGRNFFMGMFMVTMFFGGGLVPTYLLVKELGMINTMWALVIPSAASIWNIVVSRTFFQTSIPKELQEAAQMDGCTNMRLFIKIIVPLSMPIIAVMSLFYGVGHWNSYFSALIYLNDSAQYPLQLVLRQILVLQEMSAQGSGMMDASTASALNNKAEIAALVKYAVIIVATLPVIVVYPFLQRYFVQGVMIGSVKG
>NZ_CP013653.1|WP_062496129.1|5238628_5240242_-|extracellular-solute-binding-protein
MKKLRKASSMLLCLTLAASMLAACGPSKGEDGSSSSGASQEASNVKKEGFPIVDEPITLKMMSQDVGVADWNNMPVLQEMEKLTGIKLEYELAPLDSFSTKKNLVFASGDLPDMLYAADLKPAEQVTYGSQGVLIPLEKYIDEGYAPNLKKILDEHPEIRKNITTPDGHIYALPFIDTAAVWYRSPMWYNGKFLKALGVTELPKTTEELYNYLKRVKEEDPNGNGKADEIPLTSVKLDDLRMYFLGFWGIYDEKIYADKDGKVHYTPQEEGYKGYLTFLNRLWKDGLLDHETFSQTPEQKKAKGQNNQVALFNDYFPYFTLGGEPSSEHPMMTPVSSEIPGTPVYGKHPGMSANGTFAITSSNPAPEATMRWVDYLYSYEGSTLFNQGPENLLWKYKDKENRVKEWLPVPGGGDREEYRGTITPNYGILTPGINDPEVTKGLRTEFDDWIDKENQEKLVPIAKVPFPNVYLTNEEQTEASALLSDLDTYVQQMEAKFVTGQESLSNWDKYVEQIKKMGGDRIAELYQAAYDRWNAEK
>NZ_CP013653.1|WP_062496127.1|5236254_5238555_+|AraC-family-transcriptional-regulator
MKPNYFKSRLFMKYIWSYLLILLIPLVLVTVFIYENAVTNLRAEIERSRLDQLTQTKVMIDGRMKELSEIASRISYDKRLTPYRVHDPYYSGEAIQALDQYKATSSIIDEMFLYFHQDENIYSSAGLYRFDVFASHFSFQNWNKEAVFRDLNSVKIPTMRPADLVNRNTHLQQTMLAYLVPITPNSPNPHGTVMYLIRESALTSLIDSILGDYQGQTLILDQNGQILADNRQGESLDGSEASSLFELSPGIHDKMVDGKPHSIVSVKSENNGWTYVTLMPSAQFFSSVLHVRSFIIMLFVIVVAVGAAVALLLARMQYQPISTLVEFAASKSKDGDIRSAAGSSASGNELDRIRTALQEYSSRVDLQEPYARNHFLSLLLKYGNVRNLTPELQDAFDVRFDRSRLFVMVIGRSETGERQEDKPERQDLTELLSRIEFPELSAHAYGVELPQLDRFALIVCFDPDGSIREFSHVRDIVDAVRSNLLETIDVMPMIGVGTCYSSPNQLNQSFIEACSAFELGVSGASGTITYFEQLSYTPEHTFWIPNNILMKLSQSLKQGSYDVATQMIRSAIESLQSSGLSALLKRCISFDILNTMLKTAAELGIHHTMHDIAPNMIYTQSFEELERSLLNLASRICNQVELDKQKEEQSLTDQIAAYIDDHYTDHALSLETVALEFAVSPSHVSRSFKEKMGLNFSQYVWQKRVEEVKRQLTSTSDSLKDIITRVGYLDTPNFIRKFKKETGYTPGQYRKMHSAYGGHDLTAEGE
>NZ_CP013653.1|WP_062496124.1|5234774_5236160_-|alpha-L-fucosidase
MSKNDMAGKQDQVVEHGVHNYSAEEEWVKPENPLLLERLEWFKDQKLGLMMHWGPYSQLGIVESWALSDKDAEWSRDGIDWDVDAEELKRQYFGLNRTFNPVRFQPELWADLAAENGFKYLNFTTKHHDGFCMWDTRTTDYRITGPDCPFHTHKHADICKRLFDAFRARGLGISAYFSKADWHTPYYWAPGMERGTFTARGPSYDPQDCPWLWEKFVRFTHEQIMELMTRYGRIDILWLDAGWVCAQNGQDIRLGEVVEKARSIQPWLLTADRTVGGPYENIITPEQTLPERPLNVPWESCITMGTSFSFRYEDQYKSVRQLIHLLIEIVAKGGNLALNIGPQPDGRLPETAISRMRGMGEWLKAYGEAIYGTRACAPYSADNCHFTRKGDVTYAFYLYKEGDKIVPEELHIPIRGDFGKVGLVGGRDGLEHRRTDHGIAVRMPEEQRHGQTPIAHVFRLQ
>NZ_CP013653.1|WP_062496122.1|5233715_5234738_-|carbohydrate-binding-family-9-like-protein
MNRSGVPEPKIEFAPKHYICRRAPGPLELDGRVDKPFWAGAEWTDDFVDIEGDSRPKPAKRTRVKMLWDDDCFYFAAELMEDQIWATLTERDSVIFHDNDFEIFIDPDGDTHLYYEFEINALNTVWDLLLVKPYRDGGPPVNGWDIRGLKTAVHIDGELNRPGAANRKWSVEVAMPWASLRECASNGRPPAAGEFWRVNFSRVEWRTEVREGTYRKVVNPDTGKPYPEDNWVWSPMGIINMHYPELWGYVVFADENGPESFELPPDERVKWELRKLYYRQRNYFEANGTFAKDEKQLMGGDSWSIVPRIETTGKTFLISAPATDGSGRLYIREDGKLWKE
>NZ_CP013653.1|WP_062496120.1|5231095_5233708_-|transglutaminase-domain-containing-protein
MIADTSVFSLDQETMERVEQRFREKRRLARAKEHELFGIFHEEELTEEETWALKFLYAYMPVNDLADYEGSLFLSHVRKTLEIRKEVPWGDKVPDHLFLHYVLPYRVNTENIEDSRGILYRELAERTKNLSMADAILETNYWCHEKATYTGSDLRTASPLATIRNARGRCGEEATLAVAALRSIGIPARQVYTPRWAHCDDNHAWVEAWADGEWYYFGACEPEPRLNQGWFSPPARRAMLVNTRIFANYPGPEDITLADKWFTEINLLDGYAPTRTVTVAVKDEQGRPAGGADVHFQLYNMAEFYPIASLKTNGQGEATFKTGFGDLLIRAVKEGRFGEAKLAAQEGRIELMLDQTGYAEGTLDFDMVPPPERDGDGADAVPEEEMERHRKRVEEGAAIRRRYEETFIQEEEAAGIARELGLPQERVSDVLGKARGNGREIAAFLKERTPEYGEWPLRLLESLNEKDLVDTFRPALNDHLIGSLAVRGELPEDDFVRYVLCPRVQYEMIVPYRRLFQGAFTEAEIRAFKSDPSALAATIDEGWEVWEDLPNLKGRGNPAGTFRLKAGDRTSLDILFVAVCRSLGIPARLHPSEQKPQYRMNGGWTDVRSAESAVKKEERKEWGRLRLLRDAEAAPDAPAASYFGNFSFARLENGVFKTLLYPYGKSDVYDETFEVEPGTYRLTTGNRLKDGTVRVRFNYFTVRANELTEVALTFRHASLDIPVLGAVDRSRKWTLPDGTQQSIEEAAGAGAIFIAWIEPEREPSKHLLRELGELAEPFAERSVPVVLIGRDCRWAAAFREGSHKLPACAVIACDPDFAVLESVLPRFRAHEAGFPHVFVLDGQGRIRYAQSGYKLGTGKEALRIVTGLRP
>NZ_CP013653.1|WP_062496118.1|5230037_5231075_-|glycoside-hydrolase-family-18-protein
MNGRKYIAAGYAVDARLPELTEEDLAKLTHLNVAFGHVRNDEIRTDHLKHLHLLPEIKRKFPGLAILLSVGGWGAGGFSEAASSEEGRNRMAQSAVRALTDYPFDGIDLDWEYPCYGEAGIHASPDDKTNFTLLLKTIREALDRQGERDGRRYLLTIAAGADQYYVDGTEMDQAQRYLDFVQLMTYDMRGGFQVLTGHHTNLFTPSGDLFRISVDASVNLFMKAGVPKEKIVIGAAFYSRMWKQVPDRNRGLHQMAGSAGGYGPDFSALAADYIDKNGYTRYWDEEAKAPYLFNGDTFISYDDEESIRHKCEYVKSRGLAGVMFWEYGCDATHRLLDAIYRGLLT
>NZ_CP013653.1|WP_062496116.1|5229240_5229912_-|SOS-response-associated-peptidase
MCERYSLQADKADLVGMFRIEKVHHCSTNRFNIAPLQNVTIVMNNRHGERVLQQSRWGLFPYWAKDSVNADGGSLARKPFFERMLKRQRCVIPCSGFYGWKPGEKVKSPRPMHIVMPGRPLFGMAGFYDQWRNADGEEVRAFTIVTVPAAGAISVWHDRFPVILDEEAADRWLDPSLTDFTLLRKFLEPVEASQLRAYPVSEAVADENYESPDCVREIRADFA
>NZ_CP013653.1|WP_062496114.1|5227347_5228322_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MSRTCLVFAESKGGELRRVALEALHAAKLIAGGGSVHVLLAGPGEPAAGAAAELASRGADAVCVADHPAMRDYAPELYLAAIRAAAETVRPDAVLLGHTAIGRDLAPRLAAALGAGYIADATAVHADGGGFAFTRPLYAGKAFERRRFLPGVTQVLTVRPNNLPPAEPDGRQGTVAALAFEPPPLVTAVRAAVRRAAGEIDLAEADVVVSGGRGVRSAEGFAPLRELAAVLGGAVGASRGACDAGYCGYGLQIGQTGKVVTPQLYIACGISGAIQHLAGMSQSRVIVAINKDPDAPIFGVADYGIVGDLFEVVPLLTEEFRRSK
>NZ_CP013653.1|WP_062496133.1|5244350_5244644_-|CRISPR-associated-endonuclease-Cas2
MPGRRYYLVCYDIMEPRRWRQCYKLLHGYGERIQYSIFKCRLTEKQLAELRWKLVKVLNRDEDRLLITPIHPDDLSRIFLLNMPDITEDSQDSFVLV
>NZ_CP013653.1|WP_062496136.1|5246285_5246951_-|CRISPR-associated-protein-Cas5
MNWNWYKVEVPIASFAVPFSRELPESYPFPPPATVYGMLLSFIGETNRLRYRGTRIIVGVTSLPEVSWVLRKTRRYKTANISDKENSKPDQVSLLTSLQFVAGVRDSKRPGIPSLNGQVLGTLRNPRQTVRFGGLSCGESHNLINSIDLMDEDRLADYDDIWWLMSADEGEWTVSLWVDHVGSDGSVWAGAQFMPDTWERVSSLLDERSFVIDPEGQHARI
>NZ_CP013653.1|WP_062496138.1|5246947_5247874_-|DevR-family-CRISPR-associated-autoregulator
MTLHIHGTVVTHYGVAANNRGETEGNLTTLQKLLWKGETHSSVSAEAIRFAIRAYFQEQYELTGDERFLTNRYWVATPEGGDHAWRNQSFSEADYLDDDLFGYMDAKAPASELHSDEETADGQSAKKTKPKGKARARRGAMEISRAISLDPFIGETTFNARGGHKDKTSLYATEIHATSYQFSFSLTPSYLAVPERSKLVLDAIASLNAVGGNQSRYLFDFSPSSVLLRLTDDPAPRILFIFEGASDSPDKLAKLLHTVEAGDLDGKELILGGEAAGWEQAQALRKYGVAVFPGVKEAFQQAQGRLLS
>NZ_CP013653.1|WP_062496140.1|5247893_5248133_-|hypothetical-protein
MRIAWSKARTRQEFLFGLMDFLAETRPKPDGLSQQPLKILLKLRNKVDWREIRDLCLLALATYSRPEEEKETNPINKNE
>NZ_CP013653.1|WP_160327854.1|5248175_5249405_-|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1
MTDEQWHFSFREPGMTLYHRAGMAGLALALDMLQTQGELPPEVEVDIGEQDLTIRGLSYDKYGLLRLIGLTYPISPEGLIAFPTVRGWSNVAKARLQSLLLKTWLQHPKSRTAAKSQETRTETYDDRTVEWSYLPLKSLKAIESSAENWDKARKRGQPVEIASTILPGAMVRHNALKETALTDSTSRYPLLLFAMLGCLHFDGTALARTGEFDGKTESFVVIPRPAGLSAYVDKLRSYYRYYAQSGISKTWRATGTSDAALSAAVILNVDQHRLYKRLEADLTVIRFGKVVWSQQKTRTGVYHTSKVERSAVKRYKLLDECLEIDGTEGVFPFRDKFATNLIYGRPWYVGFAEYGGTKGWYRITRWKEGLKAMTRNQEMWDEEEQRQFVLLVQNAIRNRYGKVKFDAVA
>NZ_CP013653.1|WP_062496148.1|5249401_5251723_-|CRISPR-associated-helicase/endonuclease-Cas3
MTRLLAKTVPQGYSEENPPYSCLLPGHLEQVADVAEVLLDLTSPVMTSHFPWPEPLFRLSVRLAALTHDLGKISKELFQPLVHGTKAWRQCIRHEIISDWLLQNHPQLHKMMDDLLAGYREKERLLSLRSIRLAVLGHHFKFDLGTIESSERIPFLDLSFEHPDMLAVLDLFERRLGIHLPQLASIRLSLDEDDVEENIREPLKEWLDRADREMSLDEKRWMASVRSVLIAADMIGSIRADTPEEWRSKLRVLKEAVVQADVSPVLDQVLEAAKKRNPHRHPEITSFQEHVRQAALNHDIVLIESGCGTGKTQASFGWGSMTGARYMLIGYPTTATVTQGYADHMELFGNNAQLLHSRSDVDLDLLLKGGWTDNIPEDRDHSIEELREESLQRLVHPMTFCTVDTIIGLLHNYRSSYLLFPIFVNGCIVFDEAHAYDEKLWQGVLDWLKLFPMPVLIMTASLQPHRKKELIDVCSGVRSLTVQQGPPTIQSLPKYNVHLIEEGQPPLEKIVKELVGGHSVLVVLNTVERARETYDKLAVLMPDGADLLLYHSHFKYEDRVRRQENVVERTRKGGGVCIVCTPICEMSFDISVTRLFSEIAPFPSLIQRLGRLLRYLRDTDQLESKMDGNAYFWMPVTYGPYRNWDELLESEQLLRGLPRPCSQLALNERLGLMRTDGTRRREEPDWLRIERFKAESSAREAQQTTVEVILASDAAQIMKEYGTSNRLEWMKKVLPLSRSGLSRLDETVKKWRHVRIVDDQRVNYEAMKGGEWA
>NZ_CP013653.1|WP_062496150.1|5251719_5252364_-|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6
MLDLEIVRCKVPILGSRTIPFDTGYWLYAAISRIEPGFHEADQYAISPIERGLAGSDGLALTPQSYFWLQCPLSDLGMVYRLAGKQAVLGDCRIRFGIPRPEVIRPASELVSRLVTVKNKTEPDELAAHIRSRLHALNESVTGKESQQAVEAIRIEILRRRVFRIKDKRIVGFGVRLRRLSDRMSLLVQCHSVSGRRRFGCGFFTSAGGSEEGA
>NZ_CP013653.1|WP_062496152.1|5252438_5253356_-|transcriptional-regulator
MAIQAKPGIKAVELAEKFEVSKRTIYRDIDGLSAVTPITSEGRGKGFRFIGKFMMYPPDLNDEESVALSMIPFVVDTDKLPRAFHSAFDKIMAAHKGEKNKSINLIDRITERIQMGKPAYRPQSPNFLPVIIQAMLECRTLHTTYHTQYRNSTTVRQIDPYFLVPREQRFYLIGYCRKEERVRIFRVSRFLDAKMTEQTFDKGDFDIHRFLKDTWSIHRGDRKTTFKVKFSAAVARYVKEEELFVQPAMTDTADGGLMFRVTVNNEDEFIRWLLQYGPDAEVLSPRSAREAMKEKLKRWTELYAK
>NZ_CP013653.1|WP_062496154.1|5253752_5254604_-|AraC-family-transcriptional-regulator
MSDIPLLLTFRSPPLPFFIESNRVTYQPGEAHPNRTNLGVFDLLFIHRGTLHIGEEDRQWSLGPGEVLILRPDRWHYAVRPCEEEMVMDWLHFQTTAPWEETEGGSGSLRGDHYTHVIRVPKHAKLSYPEQVQDIFTSLHEAARNSTHASFWERQHRFLHLLQMLDEGWRSDEAKAAVAVAERAAAYLKLNFKLPVSNRMLSEALNLHANYIARCMNEVFGCTPQQFLLYYRLDQAKLLLLKTDWPIARIAEETGFRQTPHFSRLFAEHTGLSPLRFRKRFTG
>NZ_CP013653.1|WP_062496157.1|5254748_5256746_+|glycoside-hydrolase-family-127-protein
MSQPLRPQSAPEAVNRPLDAASVEIRDDFWSVYTDLVRDVVIPYQWEALNDRVEGAVPSRAIRNFRIAAGLEEGTFEGFVFQDSDLYKWLEALAYRLATHPDPDWERIADGMFDLIGAAQEEDGYLQTYFQIKAPDEKWTNLGEAHELYCAGHYIEAAVAYWQATGKRKALDIAVRLADCIGRTFGPGEGQLNGYDGHQEIELALVKLYRATGEERFLRLGSFFIDARGQSPSFLIDEWEKRGHASIWHAGKSQRPDLDYFQAHLPVREQKEAVGHAVRAVYMYAAMADLAALTGDASLLDACRTLWKSIVAKRMYVTGGIGSTRHGEAFTTDYDLPNDSAYAETCASVGLVFFAARMLAIEARAEYADVLERALYNNVIAGIALDGKHYFYVNPLEVRPAACERNPGLHHVKPTRQPWFGCSCCPPNVARLLASLGQYIYMVDDASRTVYAHLYIGSDSEISVDGITFKLIQKTGMPWSGDVTFAIGSLSAPAAFTLALRVPSWCDGKLPALQVNGEPVSADVTPEGYLTINRTWIDGDTVRLELPMPALRLAAHPEVRANAGKIALQRGPFVYCLEEADNEGPLQSISLPLAGRAETEPAGELFPGAVALRIDGYRDPQLVPDGALYESITALRPEPSSVRAVPYALWGNRGTGEMMVWVRYR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP013653_13	13.1\|2622124\|28\|NZ_CP013653\|CRISPRCasFinder	2622124-2622151	28	NZ_CP013653.1	3572374-3572401	0	1.0
NZ_CP013653_3	3.1\|1684269\|18\|NZ_CP013653\|CRT	1684269-1684286	18	NZ_CP013653.1	1684395-1684412	1	0.944
NZ_CP013653_3	3.3\|1684353\|18\|NZ_CP013653\|CRT	1684353-1684370	18	NZ_CP013653.1	1684395-1684412	1	0.944
NZ_CP013653_13	13.1\|2622124\|28\|NZ_CP013653\|CRISPRCasFinder	2622124-2622151	28	NZ_CP013653.1	2729268-2729295	1	0.964
NZ_CP013653_13	13.1\|2622124\|28\|NZ_CP013653\|CRISPRCasFinder	2622124-2622151	28	NZ_CP013653.1	3231700-3231727	1	0.964
NZ_CP013653_12	12.2\|2295259\|35\|NZ_CP013653\|CRISPRCasFinder	2295259-2295293	35	NZ_CP013653.1	3632252-3632286	2	0.943
NZ_CP013653_13	13.1\|2622124\|28\|NZ_CP013653\|CRISPRCasFinder	2622124-2622151	28	NZ_CP013653.1	633624-633651	2	0.929
NZ_CP013653_13	13.1\|2622124\|28\|NZ_CP013653\|CRISPRCasFinder	2622124-2622151	28	NZ_CP013653.1	3222783-3222810	2	0.929
NZ_CP013653_13	13.1\|2622124\|28\|NZ_CP013653\|CRISPRCasFinder	2622124-2622151	28	NZ_CP013653.1	5288615-5288642	2	0.929
NZ_CP013653_14	14.1\|3447051\|28\|NZ_CP013653\|CRISPRCasFinder	3447051-3447078	28	NZ_CP013653.1	633624-633651	2	0.929
NZ_CP013653_14	14.1\|3447051\|28\|NZ_CP013653\|CRISPRCasFinder	3447051-3447078	28	NZ_CP013653.1	3572374-3572401	2	0.929
NZ_CP013653_16	16.1\|4886104\|28\|NZ_CP013653\|CRISPRCasFinder	4886104-4886131	28	NZ_CP013653.1	633624-633651	2	0.929
NZ_CP013653_16	16.1\|4886104\|28\|NZ_CP013653\|CRISPRCasFinder	4886104-4886131	28	NZ_CP013653.1	3572374-3572401	2	0.929

1. spacer 13.1|2622124|28|NZ_CP013653|CRISPRCasFinder matches to position: 3572374-3572401, mismatch: 0, identity: 1.0

atttgagccaaagacatctgtcaggggc	CRISPR spacer
atttgagccaaagacatctgtcaggggc	Protospacer
****************************

2. spacer 3.1|1684269|18|NZ_CP013653|CRT matches to position: 1684395-1684412, mismatch: 1, identity: 0.944

gcagagtgggctttgccg	CRISPR spacer
gccgagtgggctttgccg	Protospacer
** ***************

3. spacer 3.3|1684353|18|NZ_CP013653|CRT matches to position: 1684395-1684412, mismatch: 1, identity: 0.944

gcagagtgggctttgccg	CRISPR spacer
gccgagtgggctttgccg	Protospacer
** ***************

4. spacer 13.1|2622124|28|NZ_CP013653|CRISPRCasFinder matches to position: 2729268-2729295, mismatch: 1, identity: 0.964

atttgagccaaagacatctgtcaggggc	CRISPR spacer
atttgagccaaagacatccgtcaggggc	Protospacer
******************.*********

5. spacer 13.1|2622124|28|NZ_CP013653|CRISPRCasFinder matches to position: 3231700-3231727, mismatch: 1, identity: 0.964

atttgagccaaagacatctgtcaggggc	CRISPR spacer
atttgagccaaagacatttgtcaggggc	Protospacer
*****************.**********

6. spacer 12.2|2295259|35|NZ_CP013653|CRISPRCasFinder matches to position: 3632252-3632286, mismatch: 2, identity: 0.943

tttttggtagttttcgcttgtctggcttgaacggg	CRISPR spacer
ttttttgtggttttcgcttgtctggcttgaacggg	Protospacer
***** **.**************************

7. spacer 13.1|2622124|28|NZ_CP013653|CRISPRCasFinder matches to position: 633624-633651, mismatch: 2, identity: 0.929

atttgagccaaagacatctgtcaggggc	CRISPR spacer
attagagccaaagacatctgtcgggggc	Protospacer
*** ******************.*****

8. spacer 13.1|2622124|28|NZ_CP013653|CRISPRCasFinder matches to position: 3222783-3222810, mismatch: 2, identity: 0.929

atttgagccaaagacatctgtcaggggc	CRISPR spacer
atttgagcctaagacatccgtcaggggc	Protospacer
********* ********.*********

9. spacer 13.1|2622124|28|NZ_CP013653|CRISPRCasFinder matches to position: 5288615-5288642, mismatch: 2, identity: 0.929

atttgagccaaagacatctgtcaggggc	CRISPR spacer
atttgcgccaaagacatctgtctggggc	Protospacer
***** **************** *****

10. spacer 14.1|3447051|28|NZ_CP013653|CRISPRCasFinder matches to position: 633624-633651, mismatch: 2, identity: 0.929

atttgagccaaagacatctttcgggggc	CRISPR spacer
attagagccaaagacatctgtcgggggc	Protospacer
*** *************** ********

11. spacer 14.1|3447051|28|NZ_CP013653|CRISPRCasFinder matches to position: 3572374-3572401, mismatch: 2, identity: 0.929

atttgagccaaagacatctttcgggggc	CRISPR spacer
atttgagccaaagacatctgtcaggggc	Protospacer
******************* **.*****

12. spacer 16.1|4886104|28|NZ_CP013653|CRISPRCasFinder matches to position: 633624-633651, mismatch: 2, identity: 0.929

atttgagccaaagacatctgtcgggagc	CRISPR spacer
attagagccaaagacatctgtcgggggc	Protospacer
*** *********************.**

13. spacer 16.1|4886104|28|NZ_CP013653|CRISPRCasFinder matches to position: 3572374-3572401, mismatch: 2, identity: 0.929

atttgagccaaagacatctgtcgggagc	CRISPR spacer
atttgagccaaagacatctgtcaggggc	Protospacer
**********************.**.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013653_4	4.12\|1694569\|37\|NZ_CP013653\|CRISPRCasFinder,CRT,PILER-CR	1694569-1694605	37	NC_019898	Thermobacillus composti KWC4 plasmid pTHECO01, complete sequence	49598-49634	1	0.973
NZ_CP013653_1	1.6\|1153039\|22\|NZ_CP013653\|CRT	1153039-1153060	22	CP018090	Xanthomonas oryzae pv. oryzae strain YN24 plasmid pXOOYN24, complete sequence	21748-21769	2	0.909
NZ_CP013653_6	6.10\|1709534\|35\|NZ_CP013653\|PILER-CR,CRISPRCasFinder,CRT	1709534-1709568	35	NZ_CP044487	Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-4, complete sequence	11765-11799	7	0.8
NZ_CP013653_8	8.6\|1729030\|29\|NZ_CP013653\|CRT	1729030-1729058	29	NZ_CP026273	Klebsiella oxytoca strain KONIH4 plasmid pKOX-ea2b, complete sequence	76431-76459	7	0.759
NZ_CP013653_10	10.1\|1850585\|28\|NZ_CP013653\|CRISPRCasFinder	1850585-1850612	28	NZ_CP049245	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed4, complete sequence	28727-28754	7	0.75
NZ_CP013653_8	8.5\|1728961\|33\|NZ_CP013653\|CRT	1728961-1728993	33	NC_019408	Caulobacter phage CcrRogue, complete genome	187892-187924	8	0.758
NZ_CP013653_8	8.8\|1728965\|33\|NZ_CP013653\|PILER-CR	1728965-1728997	33	NC_019408	Caulobacter phage CcrRogue, complete genome	187892-187924	8	0.758
NZ_CP013653_6	6.3\|1709064\|33\|NZ_CP013653\|PILER-CR,CRISPRCasFinder,CRT	1709064-1709096	33	KP881232	Sinorhizobium phage phiM9, complete genome	106957-106989	9	0.727
NZ_CP013653_8	8.2\|1728958\|36\|NZ_CP013653\|CRISPRCasFinder	1728958-1728993	36	NC_019408	Caulobacter phage CcrRogue, complete genome	187892-187927	9	0.75
NZ_CP013653_8	8.4\|1728893\|32\|NZ_CP013653\|CRT	1728893-1728924	32	HM144385	Brochothrix phage NF5, complete genome	25931-25962	9	0.719
NZ_CP013653_8	8.5\|1728961\|33\|NZ_CP013653\|CRT	1728961-1728993	33	NZ_CP015737	Shinella sp. HZN7 plasmid pShin-01, complete sequence	97192-97224	9	0.727
NZ_CP013653_8	8.7\|1728897\|32\|NZ_CP013653\|PILER-CR	1728897-1728928	32	HM144385	Brochothrix phage NF5, complete genome	25931-25962	9	0.719
NZ_CP013653_8	8.8\|1728965\|33\|NZ_CP013653\|PILER-CR	1728965-1728997	33	NZ_CP015737	Shinella sp. HZN7 plasmid pShin-01, complete sequence	97192-97224	9	0.727
NZ_CP013653_6	6.10\|1709534\|35\|NZ_CP013653\|PILER-CR,CRISPRCasFinder,CRT	1709534-1709568	35	MH638312	Bacillus phage Kioshi, complete genome	149995-150029	10	0.714
NZ_CP013653_6	6.10\|1709534\|35\|NZ_CP013653\|PILER-CR,CRISPRCasFinder,CRT	1709534-1709568	35	NC_042140	Bacillus virus BM15, complete genome	149144-149178	10	0.714
NZ_CP013653_6	6.10\|1709534\|35\|NZ_CP013653\|PILER-CR,CRISPRCasFinder,CRT	1709534-1709568	35	MH638309	Bacillus phage Hobo, complete genome	149144-149178	10	0.714
NZ_CP013653_6	6.10\|1709534\|35\|NZ_CP013653\|PILER-CR,CRISPRCasFinder,CRT	1709534-1709568	35	KJ451625	Bacillus phage Bcp1, complete genome	152730-152764	10	0.714
NZ_CP013653_7	7.4\|1719520\|34\|NZ_CP013653\|PILER-CR,CRISPRCasFinder,CRT	1719520-1719553	34	NZ_CP026221	Aeromonas sp. ASNIH4 plasmid pAER-f909, complete sequence	31610-31643	10	0.706
NZ_CP013653_8	8.3\|1729027\|32\|NZ_CP013653\|CRISPRCasFinder	1729027-1729058	32	NZ_CP026273	Klebsiella oxytoca strain KONIH4 plasmid pKOX-ea2b, complete sequence	76428-76459	10	0.688
NZ_CP013653_8	8.9\|1729034\|32\|NZ_CP013653\|PILER-CR	1729034-1729065	32	NZ_CP026273	Klebsiella oxytoca strain KONIH4 plasmid pKOX-ea2b, complete sequence	76428-76459	10	0.688
NZ_CP013653_7	7.4\|1719520\|34\|NZ_CP013653\|PILER-CR,CRISPRCasFinder,CRT	1719520-1719553	34	MT121961	Gokushovirinae sp. SC_3_H2_2017 hypothetical protein and major capsid protein genes, complete cds	547-580	11	0.676

1. spacer 4.12|1694569|37|NZ_CP013653|CRISPRCasFinder,CRT,PILER-CR matches to NC_019898 (Thermobacillus composti KWC4 plasmid pTHECO01, complete sequence) position: , mismatch: 1, identity: 0.973

gtgagggaaatgaacgattttactcctgatgcgtctc	CRISPR spacer
gtgagggaaatggacgattttactcctgatgcgtctc	Protospacer
************.************************

2. spacer 1.6|1153039|22|NZ_CP013653|CRT matches to CP018090 (Xanthomonas oryzae pv. oryzae strain YN24 plasmid pXOOYN24, complete sequence) position: , mismatch: 2, identity: 0.909

tctgtcggtggacccgacaaac	CRISPR spacer
cttgtcggtggacccgacaaac	Protospacer
..********************

3. spacer 6.10|1709534|35|NZ_CP013653|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044487 (Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-4, complete sequence) position: , mismatch: 7, identity: 0.8

--gatcgatccaatctaccaattcctttaatggtaat	CRISPR spacer
cagatggaat--atttacaaattcctttaatggtaat	Protospacer
  *** ** .  **.*** ******************

4. spacer 8.6|1729030|29|NZ_CP013653|CRT matches to NZ_CP026273 (Klebsiella oxytoca strain KONIH4 plasmid pKOX-ea2b, complete sequence) position: , mismatch: 7, identity: 0.759

tccgccaccagcgcatctagttcccgacc	CRISPR spacer
tcggccaccagcgcatcaagttcaagttt	Protospacer
** ************** *****  * ..

5. spacer 10.1|1850585|28|NZ_CP013653|CRISPRCasFinder matches to NZ_CP049245 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.75

tggtcggtgcgctccgtctttgctatac	CRISPR spacer
acatcgctgcgctccgtctttgcttccc	Protospacer
  .*** ***************** . *

6. spacer 8.5|1728961|33|NZ_CP013653|CRT matches to NC_019408 (Caulobacter phage CcrRogue, complete genome) position: , mismatch: 8, identity: 0.758

gttattccagcgcggctaattgcgcttcgagtt	CRISPR spacer
cggccttcagcgcggccagttgcgcttcgagtt	Protospacer
    .*.*********.*.**************

7. spacer 8.8|1728965|33|NZ_CP013653|PILER-CR matches to NC_019408 (Caulobacter phage CcrRogue, complete genome) position: , mismatch: 8, identity: 0.758

gttattccagcgcggctaattgcgcttcgagtt	CRISPR spacer
cggccttcagcgcggccagttgcgcttcgagtt	Protospacer
    .*.*********.*.**************

8. spacer 6.3|1709064|33|NZ_CP013653|PILER-CR,CRISPRCasFinder,CRT matches to KP881232 (Sinorhizobium phage phiM9, complete genome) position: , mismatch: 9, identity: 0.727

atgtccaacagcgattttcatgcgaagatcaga	CRISPR spacer
ggaattcacagcgattttcatctgaagatcaga	Protospacer
. . .. ************** .**********

9. spacer 8.2|1728958|36|NZ_CP013653|CRISPRCasFinder matches to NC_019408 (Caulobacter phage CcrRogue, complete genome) position: , mismatch: 9, identity: 0.75

aacgtta--ttccagcgcggctaattgcgcttcgagtt	CRISPR spacer
--cctcggccttcagcgcggccagttgcgcttcgagtt	Protospacer
  * *..  .*.*********.*.**************

10. spacer 8.4|1728893|32|NZ_CP013653|CRT matches to HM144385 (Brochothrix phage NF5, complete genome) position: , mismatch: 9, identity: 0.719

ggaaaaatggaccaagaagcgcggggccgtta	CRISPR spacer
agaaaagtggaccaagaaacgcggagaactag	Protospacer
.*****.***********.*****.*   * .

11. spacer 8.5|1728961|33|NZ_CP013653|CRT matches to NZ_CP015737 (Shinella sp. HZN7 plasmid pShin-01, complete sequence) position: , mismatch: 9, identity: 0.727

gttattccagcgcggctaattgcgcttcgagtt	CRISPR spacer
ggcgctccagcgcggcgagttgcgcttcggcat	Protospacer
* ...*********** *.**********.  *

12. spacer 8.7|1728897|32|NZ_CP013653|PILER-CR matches to HM144385 (Brochothrix phage NF5, complete genome) position: , mismatch: 9, identity: 0.719

ggaaaaatggaccaagaagcgcggggccgtta	CRISPR spacer
agaaaagtggaccaagaaacgcggagaactag	Protospacer
.*****.***********.*****.*   * .

13. spacer 8.8|1728965|33|NZ_CP013653|PILER-CR matches to NZ_CP015737 (Shinella sp. HZN7 plasmid pShin-01, complete sequence) position: , mismatch: 9, identity: 0.727

gttattccagcgcggctaattgcgcttcgagtt	CRISPR spacer
ggcgctccagcgcggcgagttgcgcttcggcat	Protospacer
* ...*********** *.**********.  *

14. spacer 6.10|1709534|35|NZ_CP013653|PILER-CR,CRISPRCasFinder,CRT matches to MH638312 (Bacillus phage Kioshi, complete genome) position: , mismatch: 10, identity: 0.714

gatcgatccaatctaccaattcctttaatggtaat	CRISPR spacer
ctttcttttcatctaccaatttctttaatgctaat	Protospacer
  *.  *.. ***********.******** ****

15. spacer 6.10|1709534|35|NZ_CP013653|PILER-CR,CRISPRCasFinder,CRT matches to NC_042140 (Bacillus virus BM15, complete genome) position: , mismatch: 10, identity: 0.714

gatcgatccaatctaccaattcctttaatggtaat	CRISPR spacer
ctttcttttcatctaccaatttctttaatgctaat	Protospacer
  *.  *.. ***********.******** ****

16. spacer 6.10|1709534|35|NZ_CP013653|PILER-CR,CRISPRCasFinder,CRT matches to MH638309 (Bacillus phage Hobo, complete genome) position: , mismatch: 10, identity: 0.714

gatcgatccaatctaccaattcctttaatggtaat	CRISPR spacer
ctttcttttcatctaccaatttctttaatgctaat	Protospacer
  *.  *.. ***********.******** ****

17. spacer 6.10|1709534|35|NZ_CP013653|PILER-CR,CRISPRCasFinder,CRT matches to KJ451625 (Bacillus phage Bcp1, complete genome) position: , mismatch: 10, identity: 0.714

gatcgatccaatctaccaattcctttaatggtaat	CRISPR spacer
ctttcttttcatctaccaatttctttaatgctaat	Protospacer
  *.  *.. ***********.******** ****

18. spacer 7.4|1719520|34|NZ_CP013653|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026221 (Aeromonas sp. ASNIH4 plasmid pAER-f909, complete sequence) position: , mismatch: 10, identity: 0.706

cgcgatttccttaacgtcctcgacattgatcatc	CRISPR spacer
ttgaagtctcttaacgtcgtcgccattgatcatg	Protospacer
.  .* *..********* *** **********

19. spacer 8.3|1729027|32|NZ_CP013653|CRISPRCasFinder matches to NZ_CP026273 (Klebsiella oxytoca strain KONIH4 plasmid pKOX-ea2b, complete sequence) position: , mismatch: 10, identity: 0.688

tactccgccaccagcgcatctagttcccgacc	CRISPR spacer
acatcggccaccagcgcatcaagttcaagttt	Protospacer
   ** ************** *****  * ..

20. spacer 8.9|1729034|32|NZ_CP013653|PILER-CR matches to NZ_CP026273 (Klebsiella oxytoca strain KONIH4 plasmid pKOX-ea2b, complete sequence) position: , mismatch: 10, identity: 0.688

tactccgccaccagcgcatctagttcccgacc	CRISPR spacer
acatcggccaccagcgcatcaagttcaagttt	Protospacer
   ** ************** *****  * ..

21. spacer 7.4|1719520|34|NZ_CP013653|PILER-CR,CRISPRCasFinder,CRT matches to MT121961 (Gokushovirinae sp. SC_3_H2_2017 hypothetical protein and major capsid protein genes, complete cds) position: , mismatch: 11, identity: 0.676

cgcgatttccttaacgtcctcgacattgatcatc	CRISPR spacer
aatcgcttccttaacgtccttgaccttgattaat	Protospacer
 .. ..**************.*** *****.* .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

20573 : 78431

Clostridium_phage(31.25%)

coat,holin,tail,plate,integrase

attL 77469:77492|attR 78665:78688

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062489163.1\|20573_20936_+\|coat	spore coat protein	NA	NA	NA	NA
WP_062489165.1\|21044_23279_-	YhgE/Pip domain-containing protein	NA	NA	NA	NA
WP_062489167.1\|23374_23950_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_082654979.1\|24255_25092_-	hypothetical protein	Q0H257	Geobacillus_phage	6.9e-37	48.9
WP_062489169.1\|25088_25538_-\|holin	phage holin family protein	D9ZNF2	Clostridium_phage	7.0e-20	43.7
WP_082654980.1\|25643_25796_-	XkdX family protein	NA	NA	NA	NA
WP_062489171.1\|26266_27556_-	hypothetical protein	S6B1J7	Thermus_phage	6.1e-24	29.3
WP_062489173.1\|27559_27841_-	hypothetical protein	NA	NA	NA	NA
WP_062489175.1\|27837_28431_-	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_062489177.1\|28423_29500_-\|plate	baseplate J/gp47 family protein	A0A0K2CP27	Brevibacillus_phage	9.7e-92	47.7
WP_062489179.1\|29492_29897_-	DUF2634 domain-containing protein	A0A0A7RTU4	Clostridium_phage	2.7e-23	42.1
WP_062489180.1\|29893_30187_-	DUF2577 domain-containing protein	A0A0A7RTJ2	Clostridium_phage	3.5e-12	41.7
WP_062489182.1\|30189_31158_-	hypothetical protein	S5MNC9	Brevibacillus_phage	1.2e-101	51.9
WP_062489184.1\|31150_31822_-	LysM peptidoglycan-binding domain-containing protein	A0A0K2CNM3	Brevibacillus_phage	1.5e-55	49.8
WP_145977116.1\|31818_33723_-	hypothetical protein	A0A0K2CP22	Brevibacillus_phage	2.4e-53	30.0
WP_062489188.1\|34084_34495_-	XkdN-like protein	A0A0A7RTY8	Clostridium_phage	1.4e-06	31.2
WP_062489190.1\|34514_34979_-\|tail	phage tail tube protein	A0A0A7RVP1	Clostridium_phage	1.5e-41	58.1
WP_062489192.1\|34992_36309_-\|tail	phage tail sheath protein	S5MUG6	Brevibacillus_phage	2.1e-120	50.8
WP_160327742.1\|36310_36475_-	hypothetical protein	NA	NA	NA	NA
WP_062489194.1\|36471_36900_-	hypothetical protein	NA	NA	NA	NA
WP_062496333.1\|37197_37809_-	RNA polymerase subunit sigma-24	NA	NA	NA	NA
WP_062489196.1\|38035_38449_+	helix-turn-helix transcriptional regulator	A0A2H4J245	uncultured_Caudovirales_phage	1.3e-17	70.3
WP_062489198.1\|38461_38872_+	ImmA/IrrE family metallo-endopeptidase	Q9T201	Bacillus_phage	6.6e-17	42.2
WP_062489200.1\|38935_39625_-	hypothetical protein	NA	NA	NA	NA
WP_062489202.1\|39621_40110_-	hypothetical protein	NA	NA	NA	NA
WP_062489204.1\|40330_40600_+	winged helix-turn-helix transcriptional regulator	A0A218MNF3	uncultured_virus	2.0e-06	39.7
WP_062489206.1\|40606_41221_+	DUF1648 domain-containing protein	NA	NA	NA	NA
WP_062489208.1\|41309_43010_-	ABC-ATPase domain-containing protein	NA	NA	NA	NA
WP_062489210.1\|43142_43994_-	EamA family transporter	NA	NA	NA	NA
WP_062496335.1\|44198_45203_-	hypothetical protein	NA	NA	NA	NA
WP_062489212.1\|45229_46168_-	carbohydrate kinase family protein	NA	NA	NA	NA
WP_062489215.1\|46178_47255_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.2e-33	38.8
WP_062489218.1\|47264_48050_-	ABC transporter permease	NA	NA	NA	NA
WP_062489219.1\|48053_48875_-	ABC transporter permease	NA	NA	NA	NA
WP_062489221.1\|48899_49994_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_062496337.1\|50020_50728_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_062489223.1\|50931_51699_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_062489224.1\|51887_52868_+	family 43 glycosylhydrolase	NA	NA	NA	NA
WP_062489226.1\|52945_53881_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_145977302.1\|53970_55278_-	family 43 glycosylhydrolase	NA	NA	NA	NA
WP_062489228.1\|55554_56535_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_062489230.1\|56539_57412_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_062489232.1\|57408_59868_-	hypothetical protein	NA	NA	NA	NA
WP_062489233.1\|59877_60492_-	hypothetical protein	NA	NA	NA	NA
WP_062489235.1\|60488_61967_-	hypothetical protein	NA	NA	NA	NA
WP_082655476.1\|61980_62799_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_082654981.1\|62850_63807_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_062489238.1\|63813_66792_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_082654982.1\|66888_68283_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_062489241.1\|68793_69660_-	polyamine aminopropyltransferase	NA	NA	NA	NA
WP_062489242.1\|69991_71029_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA
WP_082655477.1\|71093_71861_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_062489246.1\|74814_76827_-	chemotaxis protein CheA	NA	NA	NA	NA
WP_062489248.1\|76839_77265_-	chemotaxis protein CheW	NA	NA	NA	NA
77469:77492	attL	NA	NA	NA	NA
WP_062489250.1\|77507_78431_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_062489250.1\|77507_78431_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
78665:78688	attR	NA	NA	NA	NA

DBSCAN-SWA_2

498567 : 504918

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062489959.1\|498567_499251_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.2e-20	31.1
WP_062489962.1\|499460_500984_-	HAMP domain-containing histidine kinase	A0A1B0VMK3	Pseudomonas_phage	2.3e-14	27.6
WP_062496425.1\|500990_501698_-	response regulator transcription factor	W8CYM9	Bacillus_phage	4.6e-26	33.6
WP_062489965.1\|501874_502549_+	response regulator transcription factor	W8CYM9	Bacillus_phage	9.5e-29	34.2
WP_062496427.1\|502578_503943_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	6.0e-14	27.8
WP_062489970.1\|504003_504918_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.2e-44	44.9

DBSCAN-SWA_3

1739340 : 1789149

Moraxella_phage(20.0%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062491863.1\|1739340_1740585_-\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	7.0e-86	46.5
WP_062491865.1\|1740899_1741370_-	hypothetical protein	NA	NA	NA	NA
WP_062491868.1\|1741944_1742811_+	hypothetical protein	NA	NA	NA	NA
WP_062491871.1\|1742903_1744205_+	trigger factor	NA	NA	NA	NA
WP_062491874.1\|1744504_1745098_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	2.8e-56	57.4
WP_062491875.1\|1745123_1746380_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-150	65.9
WP_062491877.1\|1746479_1747586_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_062491879.1\|1747737_1749441_+\|protease	ATP-dependent protease LonB	A0A0R6PGP8	Moraxella_phage	3.5e-19	25.3
WP_062491881.1\|1749475_1751854_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.4e-178	42.9
WP_062491883.1\|1751850_1752447_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_062491885.1\|1752655_1753246_+	hypothetical protein	NA	NA	NA	NA
WP_062491887.1\|1753562_1753961_+	adenosylmethionine decarboxylase	A0A222YVV4	Synechococcus_phage	5.3e-19	37.7
WP_082655131.1\|1754197_1755583_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_082655132.1\|1755902_1757621_+	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_062491889.1\|1757613_1759191_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_062491891.1\|1759187_1760201_+	porphobilinogen synthase	NA	NA	NA	NA
WP_062491893.1\|1760357_1761662_+	glutamate-1-semialdehyde 2,1-aminomutase	A0A1V0SKB7	Klosneuvirus	3.9e-10	26.9
WP_082655133.1\|1761677_1762631_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_062491895.1\|1763309_1765070_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_062491897.1\|1766930_1769588_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.5e-165	42.0
WP_062491899.1\|1769616_1770990_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_082655134.1\|1770996_1772397_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_062491900.1\|1772553_1774107_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_062491902.1\|1774164_1774407_+	DUF4321 domain-containing protein	NA	NA	NA	NA
WP_062496631.1\|1774430_1775081_+	septum formation inhibitor Maf	NA	NA	NA	NA
WP_062496635.1\|1775161_1775851_+	JAB domain-containing protein	NA	NA	NA	NA
WP_062491904.1\|1775893_1776928_+	rod shape-determining protein	NA	NA	NA	NA
WP_062491906.1\|1776961_1777846_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_062491908.1\|1777842_1778367_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_062491911.1\|1778430_1779090_+	septum site-determining protein MinC	NA	NA	NA	NA
WP_062491913.1\|1779093_1779885_+	septum site-determining protein MinD	NA	NA	NA	NA
WP_062491915.1\|1779892_1781041_+	rod shape-determining protein RodA	NA	NA	NA	NA
WP_062491917.1\|1781133_1782090_+	D-2-hydroxyacid dehydrogenase	M1HBE3	Paramecium_bursaria_Chlorella_virus	9.3e-30	35.9
WP_062491918.1\|1782252_1783221_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_062491920.1\|1783213_1784110_+\|protease	Zn-dependent protease	NA	NA	NA	NA
WP_082655554.1\|1784470_1785322_+	nucleoside hydrolase	NA	NA	NA	NA
WP_062491924.1\|1785673_1786924_+	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_082655135.1\|1787242_1788277_+\|protease	FtsH protease activity modulator HflK	M1PGF9	Moumouvirus	2.7e-06	19.6
WP_062491926.1\|1788273_1789149_+\|protease	protease modulator HflC	NA	NA	NA	NA

DBSCAN-SWA_4

1972006 : 2006800

Aeribacillus_phage(21.21%)

capsid,holin,plate,integrase,terminase,portal

attL 1973044:1973059|attR 2006548:2006563

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062492214.1\|1972006_1973989_+	AAA family ATPase	A0A1L2K2K3	Aeribacillus_phage	1.0e-134	44.1
1973044:1973059	attL	NA	NA	NA	NA
WP_082655151.1\|1973992_1974910_+	recombinase	A0A1L2JY28	Aeribacillus_phage	9.7e-101	62.8
WP_062492217.1\|1974909_1975617_+	MBL fold metallo-hydrolase	A0A1L2JY21	Aeribacillus_phage	6.4e-84	64.2
WP_062492218.1\|1975622_1975874_+	hypothetical protein	NA	NA	NA	NA
WP_160327785.1\|1975876_1976026_+	hypothetical protein	A0A2H4J977	uncultured_Caudovirales_phage	1.1e-06	50.0
WP_062492220.1\|1976050_1976899_+	DnaD domain protein	A0A0K2CY85	Paenibacillus_phage	3.2e-58	49.5
WP_160327786.1\|1976885_1977233_+	hypothetical protein	NA	NA	NA	NA
WP_062496654.1\|1977240_1978620_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	3.3e-100	48.5
WP_145977175.1\|1978616_1978916_+	hypothetical protein	A0A0K2CNP4	Brevibacillus_phage	4.4e-10	42.4
WP_082655564.1\|1978824_1979202_+	DUF1064 domain-containing protein	A0A2P1JTY5	Anoxybacillus_phage	1.0e-24	55.0
WP_062492227.1\|1979198_1979972_+	MmcB family DNA repair protein	A0A2P1JTY9	Anoxybacillus_phage	9.8e-62	45.6
WP_062492231.1\|1980219_1981026_+	DNA adenine methylase	Q5QF26	Pseudomonas_virus	3.3e-60	45.6
WP_062492233.1\|1981019_1981271_+	hypothetical protein	NA	NA	NA	NA
WP_062492241.1\|1981914_1982394_+	hypothetical protein	A0A076G7T6	Mycobacterium_phage	5.1e-45	59.9
WP_062492243.1\|1982390_1982600_+	hypothetical protein	NA	NA	NA	NA
WP_062492245.1\|1982596_1983046_+	ASCH domain-containing protein	A0A068CCC0	Rhizobium_phage	1.0e-10	30.2
WP_062492247.1\|1983042_1983333_+	hypothetical protein	NA	NA	NA	NA
WP_062492249.1\|1983429_1983882_+	hypothetical protein	A0A0C5AJ96	Bacteriophage	2.9e-13	33.8
WP_062492250.1\|1984547_1984886_+	hypothetical protein	NA	NA	NA	NA
WP_062492251.1\|1984917_1985139_+	hypothetical protein	NA	NA	NA	NA
WP_145977176.1\|1985288_1985558_+	hypothetical protein	NA	NA	NA	NA
WP_062492252.1\|1985619_1986228_+\|integrase	tyrosine-type recombinase/integrase	W8CYP1	Bacillus_phage	1.3e-40	48.2
WP_145977337.1\|1986495_1987245_+	hypothetical protein	D0R7J0	Paenibacillus_phage	1.2e-27	48.0
WP_062492254.1\|1987216_1988506_+\|terminase	PBSX family phage terminase large subunit	E5DV50	Deep-sea_thermophilic_phage	7.3e-187	74.0
WP_145977177.1\|1988579_1989881_+\|portal	phage portal protein	A0A2H4J4Q7	uncultured_Caudovirales_phage	1.1e-84	41.8
WP_062492255.1\|1989877_1991137_+	hypothetical protein	E5DV54	Deep-sea_thermophilic_phage	2.7e-53	40.0
WP_160327787.1\|1991438_1992110_+	DUF4355 domain-containing protein	A0A0A7AQU8	Bacillus_phage	7.8e-07	25.6
WP_062492257.1\|1992132_1993122_+\|capsid	phage major capsid protein	A0A2K9V3F8	Faecalibacterium_phage	2.7e-80	50.5
WP_062492258.1\|1993194_1993497_+	SAP domain-containing protein	NA	NA	NA	NA
WP_062492259.1\|1993493_1993919_+	DUF4054 domain-containing protein	NA	NA	NA	NA
WP_062492260.1\|1993893_1994394_+	hypothetical protein	E5DV55	Deep-sea_thermophilic_phage	7.5e-39	50.3
WP_062492261.1\|1994395_1994743_+	hypothetical protein	NA	NA	NA	NA
WP_062492262.1\|1994735_1995239_+	hypothetical protein	A8ATH1	Listeria_phage	9.9e-15	40.1
WP_062492263.1\|1995243_1996254_+	DUF3383 family protein	A0A1L2JZ70	Aeribacillus_phage	7.7e-83	47.5
WP_062496659.1\|1996275_1996671_+	DUF3277 family protein	A0A1L2K2P1	Aeribacillus_phage	1.5e-34	60.0
WP_062492264.1\|1996744_1997017_+	hypothetical protein	D6PSY5	Lactobacillus_phage	3.4e-09	43.7
WP_062492265.1\|1997172_1999164_+	hypothetical protein	A0A0A7S0K9	Clostridium_phage	4.5e-26	29.9
WP_062492266.1\|1999166_1999751_+	LysM peptidoglycan-binding domain-containing protein	A0A2H4JD33	uncultured_Caudovirales_phage	1.4e-15	32.1
WP_062492267.1\|1999752_2000055_+	hypothetical protein	NA	NA	NA	NA
WP_062492268.1\|2000051_2000852_+	hypothetical protein	E5DV61	Deep-sea_thermophilic_phage	1.4e-66	46.3
WP_062492269.1\|2000838_2001228_+	hypothetical protein	NA	NA	NA	NA
WP_062492270.1\|2001224_2001572_+	DUF2634 domain-containing protein	NA	NA	NA	NA
WP_062492271.1\|2001564_2002740_+\|plate	baseplate J/gp47 family protein	A0A1L2JY69	Aeribacillus_phage	7.0e-112	53.9
WP_062492272.1\|2002736_2003375_+	hypothetical protein	E5DV65	Deep-sea_thermophilic_phage	9.9e-60	57.4
WP_062492273.1\|2003387_2004677_+	hypothetical protein	A0A1L2K2Q1	Aeribacillus_phage	1.5e-11	49.4
WP_062492274.1\|2004687_2005137_+	hypothetical protein	NA	NA	NA	NA
WP_145977179.1\|2005105_2005330_+	hypothetical protein	NA	NA	NA	NA
WP_082655155.1\|2005329_2005470_+	XkdX family protein	NA	NA	NA	NA
WP_062492276.1\|2005521_2005974_+\|holin	phage holin family protein	A0A0A7S099	Clostridium_phage	7.8e-19	38.6
WP_082655156.1\|2005966_2006800_+	hypothetical protein	Q0H257	Geobacillus_phage	1.2e-36	47.2
2006548:2006563	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2560547 : 2566655

Staphylococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062492707.1\|2560547_2560979_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.0e-20	45.0
WP_062492708.1\|2561659_2562799_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.7e-54	36.5
WP_062492709.1\|2562783_2563458_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	4.1e-32	41.8
WP_062492710.1\|2563518_2564769_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.4e-121	55.3
WP_062492711.1\|2564777_2565248_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.2e-43	57.2
WP_062492712.1\|2565271_2566051_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	8.2e-08	29.2
WP_062492713.1\|2566019_2566655_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.8e-14	29.9

DBSCAN-SWA_6

5126853 : 5137142

Prochlorococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062495974.1\|5126853_5128401_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	4.5e-74	52.6
WP_062495976.1\|5128451_5129063_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.7e-30	40.9
WP_062495978.1\|5129062_5130106_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.7e-70	45.6
WP_062495979.1\|5130182_5131664_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.5e-53	32.6
WP_062495981.1\|5131648_5133892_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.4e-164	42.8
WP_062495983.1\|5133869_5134565_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_062495985.1\|5134568_5134811_-	phosphoribosylformylglycinamidine synthase subunit PurS	A0A0E3FJ99	Synechococcus_phage	5.3e-06	33.8
WP_062495986.1\|5134931_5135825_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	2.4e-40	34.6
WP_062495989.1\|5135840_5137142_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.3e-21	26.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013653

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection