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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013650 Lacimicrobium alkaliphilum strain YelD216, complete genome 5 crisprs WYL,cas3,DEDDh,csa3,DinG 2 1 2 0

Results visualization

1. NZ_CP013650
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013650_1 94118-94265 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013650_2 517685-517789 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013650_3 1091501-1091590 Orphan I-E
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013650_4 1672637-1672745 Orphan NA
1 spacers
DinG

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013650_5 1721371-1721470 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP013650_2 2.1|517710|55|NZ_CP013650|CRISPRCasFinder 517710-517764 55 NZ_CP013650.1 517553-517607 0 1.0
NZ_CP013650_2 2.1|517710|55|NZ_CP013650|CRISPRCasFinder 517710-517764 55 NZ_CP013650.1 517396-517450 2 0.964
NZ_CP013650_5 5.1|1721395|52|NZ_CP013650|CRISPRCasFinder 1721395-1721446 52 NZ_CP013650.1 1720727-1720778 2 0.962

1. spacer 2.1|517710|55|NZ_CP013650|CRISPRCasFinder matches to position: 517553-517607, mismatch: 0, identity: 1.0

tccggactatccctgtcctccgccctttgggccgtcgtcgcgggctccgacgtta	CRISPR spacer
tccggactatccctgtcctccgccctttgggccgtcgtcgcgggctccgacgtta	Protospacer
*******************************************************

2. spacer 2.1|517710|55|NZ_CP013650|CRISPRCasFinder matches to position: 517396-517450, mismatch: 2, identity: 0.964

tccggactatccctgtcctccgccctttgggccgtcgtcgcgggctccgacgtta	CRISPR spacer
tccggactatccctgtcctccgtccttcgggccgtcgtcgcgggctccgacgtta	Protospacer
**********************.****.***************************

3. spacer 5.1|1721395|52|NZ_CP013650|CRISPRCasFinder matches to position: 1720727-1720778, mismatch: 2, identity: 0.962

gttttagtgttcgtctgcgtccatgtagctcacccgctttgcgggtcagcta	CRISPR spacer
gttttagtgttcgtctgcgtccatgtagctcacccgcttcgcgggccagcta	Protospacer
***************************************.*****.******

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP013650_3 3.1|1091531|30|NZ_CP013650|CRISPRCasFinder 1091531-1091560 30 CP040041 Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence 126448-126477 4 0.867
NZ_CP013650_3 3.1|1091531|30|NZ_CP013650|CRISPRCasFinder 1091531-1091560 30 CP040041 Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence 126292-126321 5 0.833
NZ_CP013650_3 3.1|1091531|30|NZ_CP013650|CRISPRCasFinder 1091531-1091560 30 CP040041 Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence 126370-126399 5 0.833
NZ_CP013650_3 3.1|1091531|30|NZ_CP013650|CRISPRCasFinder 1091531-1091560 30 CP040041 Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence 126331-126360 7 0.767
NZ_CP013650_3 3.1|1091531|30|NZ_CP013650|CRISPRCasFinder 1091531-1091560 30 NZ_LR214939 Mycoplasma salivarium strain NCTC10113 plasmid 2 223242-223271 8 0.733
NZ_CP013650_3 3.1|1091531|30|NZ_CP013650|CRISPRCasFinder 1091531-1091560 30 NZ_CP016441 Bordetella pseudohinzii strain HI4681 plasmid unnamed1, complete sequence 1354-1383 9 0.7

1. spacer 3.1|1091531|30|NZ_CP013650|CRISPRCasFinder matches to CP040041 (Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.867

ttgctttcttatctgcttctgc--gccgttta	CRISPR spacer
ctgctttcttatctgcttctgcttgacgtt--	Protospacer
.*********************  * ****  

2. spacer 3.1|1091531|30|NZ_CP013650|CRISPRCasFinder matches to CP040041 (Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

ttgctttcttatctgcttctgc--gccgttta	CRISPR spacer
ctgctttcttgtctgcttctgcctgacgtt--	Protospacer
.*********.***********  * ****  

3. spacer 3.1|1091531|30|NZ_CP013650|CRISPRCasFinder matches to CP040041 (Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

ttgctttcttatctgcttctgc--gccgttta	CRISPR spacer
ctgctttcttatccgcttctgcctgacgtt--	Protospacer
.************.********  * ****  

4. spacer 3.1|1091531|30|NZ_CP013650|CRISPRCasFinder matches to CP040041 (Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

ttgctttcttatctgcttctgcgccgttta	CRISPR spacer
ctgctttcttatctgcttctgcttggcgtt	Protospacer
.********************* . *. * 

5. spacer 3.1|1091531|30|NZ_CP013650|CRISPRCasFinder matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 8, identity: 0.733

ttgctttcttatctgcttctgcgccgttta	CRISPR spacer
ttgctttcttatctgcttttgcaatacctt	Protospacer
******************.***. ....* 

6. spacer 3.1|1091531|30|NZ_CP013650|CRISPRCasFinder matches to NZ_CP016441 (Bordetella pseudohinzii strain HI4681 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctttcttatctgcttctgcgccgttta	CRISPR spacer
catatttctgatctgcttctgcgccatcgc	Protospacer
.   ***** ***************.*.  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1988337 : 1996927 10 uncultured_Caudovirales_phage(33.33%) tRNA NA
DBSCAN-SWA_2 3320384 : 3328470 12 uncultured_Caudovirales_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage