CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013692	Paucibacter sp. KCTC 42545, complete genome	8 crisprs	WYL,DEDDh,DinG,cas3,csa3,Cas9_archaeal	1	1	16	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013692_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013692_1

585638-585724

Orphan

Consensus_repeat	Method
CTAATCAGTTGGGGACAGAGCAGCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013692_1

>merge|NZ_CP013692|1|585638-585724|CRISPRCasFinder
CTAATCAGTTGGGGACAGAGCAGCCCCGGGGTACCGGGTCAGGTCTGTCCCCAAGCTCACCTAATCAGTTGGGGACAGAGCAGCCCC

>NZ_CP013692|1|1|585638-585724|CRISPRCasFinder
CTAATCAGTTGGGGACAGAGCAGCCCC	GGGGTACCGGGTCAGGTCTGTCCCCAAGCTCAC
CTAATCAGTTGGGGACAGAGCAGCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013692.1\|WP_058718766.1\|575880_576282_+\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|376792
NZ_CP013692.1\|WP_082679726.1\|581661_583101_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP013692.1\|WP_058718768.1\|577099_578917_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374891
NZ_CP013692.1\|WP_082679727.1\|582937_583669_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP013692.1\|WP_058718778.1\|596054_596480_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP013692.1\|WP_058718775.1\|589215_593151_+\|FAD/FMN-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|378859
NZ_CP013692.1\|WP_058718771.1\|583687_584428_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236524
NZ_CP013692.1\|WP_058722038.1\|587508_588819_-\|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB	unknown	unknown	gnl\|CDD\|182876
NZ_CP013692.1\|WP_156421860.1\|576292_577006_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|223880
NZ_CP013692.1\|WP_058718773.1\|585756_586608_-\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE	unknown	unknown	gnl\|CDD\|182875
NZ_CP013692.1\|WP_058718774.1\|586609_587497_-\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA	unknown	unknown	gnl\|CDD\|182550
NZ_CP013692.1\|WP_058718777.1\|594831_595887_-\|ornithine-cyclodeaminase	unknown	unknown	gnl\|CDD\|236064
NZ_CP013692.1\|WP_058718779.1\|596516_597137_-\|membrane-integrity-associated-transporter-subunit-PqiC	unknown	unknown	gnl\|CDD\|377153
NZ_CP013692.1\|WP_058718772.1\|584424_585507_-\|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NZ_CP013692.1\|WP_058718765.1\|575457_575871_+\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP013692.1\|WP_058718776.1\|594353_594797_+\|HIT-family-protein	unknown	unknown	gnl\|CDD\|223611
NZ_CP013692.1\|WP_058718769.1\|578934_579603_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP013692.1\|WP_058718780.1\|597133_598141_-\|MCE-family-protein	unknown	unknown	gnl\|CDD\|225553
NZ_CP013692.1\|WP_058722037.1\|579703_581383_+\|gamma-glutamyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223482
NZ_CP013692.1\|WP_082679728.1\|593263_594295_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234

Protein	Function_ID	Function_description	E-value
NZ_CP013692.1\|WP_058718766.1\|575880_576282_+\|biopolymer-transporter-ExbD	gnl\|CDD\|376792	pfam02472, ExbD, Biopolymer transport protein ExbD/TolR. This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria. The Pfam family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins.	6.90356e-20
NZ_CP013692.1\|WP_082679726.1\|581661_583101_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.62133e-52
NZ_CP013692.1\|WP_058718768.1\|577099_578917_+\|hypothetical-protein	gnl\|CDD\|374891	pfam16930, Porin_5, Putative porin.	2.55574e-173
NZ_CP013692.1\|WP_082679727.1\|582937_583669_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	4.11493e-25
NZ_CP013692.1\|WP_058718778.1\|596054_596480_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.45889e-25
NZ_CP013692.1\|WP_058718775.1\|589215_593151_+\|FAD/FMN-binding-oxidoreductase	gnl\|CDD\|378859	pfam12447, DUF3683, Protein of unknown function (DUF3683). This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with pfam02754, pfam01565, pfam02913.	8.39189e-71
NZ_CP013692.1\|WP_058718771.1\|583687_584428_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236524	PRK09454, ugpQ, cytoplasmic glycerophosphodiester phosphodiesterase; Provisional.	2.98216e-118
NZ_CP013692.1\|WP_058722038.1\|587508_588819_-\|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB	gnl\|CDD\|182876	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB.	0
NZ_CP013692.1\|WP_156421860.1\|576292_577006_+\|TonB-dependent-receptor	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	0.000922228
NZ_CP013692.1\|WP_058718773.1\|585756_586608_-\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE	gnl\|CDD\|182875	PRK10973, PRK10973, sn-glycerol-3-phosphate ABC transporter permease UgpE.	9.75404e-136
NZ_CP013692.1\|WP_058718774.1\|586609_587497_-\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA	gnl\|CDD\|182550	PRK10561, PRK10561, sn-glycerol-3-phosphate ABC transporter permease UgpA.	3.04052e-122
NZ_CP013692.1\|WP_058718777.1\|594831_595887_-\|ornithine-cyclodeaminase	gnl\|CDD\|236064	PRK07589, PRK07589, ornithine cyclodeaminase; Validated.	0
NZ_CP013692.1\|WP_058718779.1\|596516_597137_-\|membrane-integrity-associated-transporter-subunit-PqiC	gnl\|CDD\|377153	pfam03886, ABC_trans_aux, ABC-type transport auxiliary lipoprotein component. ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.	1.248e-21
NZ_CP013692.1\|WP_058718772.1\|584424_585507_-\|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
NZ_CP013692.1\|WP_058718765.1\|575457_575871_+\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	1.25903e-26
NZ_CP013692.1\|WP_058718776.1\|594353_594797_+\|HIT-family-protein	gnl\|CDD\|223611	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only].	1.01571e-18
NZ_CP013692.1\|WP_058718769.1\|578934_579603_+\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	2.15463e-05
NZ_CP013692.1\|WP_058718780.1\|597133_598141_-\|MCE-family-protein	gnl\|CDD\|225553	COG3008, PqiB, Paraquat-inducible protein B [General function prediction only].	6.39958e-17
NZ_CP013692.1\|WP_058722037.1\|579703_581383_+\|gamma-glutamyltransferase-family-protein	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
NZ_CP013692.1\|WP_082679728.1\|593263_594295_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	5.0319e-132

>NZ_CP013692.1|WP_058718772.1|584424_585507_-|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC
MASISLRNIIKRYGHGPKANQVIHGVNAEIKDGEFVVIVGPSGCGKSTLLRMVAGLEEISDGEIAIGPRVVNQIEPAERDIAMVFQNYALYPHMTVFANMAYGLKIQKVPEAEIKTRVDKAAKILELGALLERKPRELSGGQRQRVAMGRAIVRNPQVFLFDEPLSNLDAKLRAQTRLEIQKLHRELGVTSLFVTHDQVEAMTLAQRMIVMNGGRMEQFGTPEEVYGSPASTFVAGFMGSPPMNLLKGQVDGGSFKLKGITLPLPAAAPRPGALTLGLRPEHVDAWSSTQTQPGAWPLRVEMIEMLGAERLVYGRLGEEAFTLRIDGTVTPPAIGDTLYLEVSARHLHWFDSETTLRVNP
>NZ_CP013692.1|WP_058718771.1|583687_584428_-|glycerophosphodiester-phosphodiesterase
MNAQAWPLPFWIAHRGAGKLAPENTLAAFRLGAQHGYRAFECDVKLSSDGIPFLLHDATLERTSNGQGVAGDLPWATLSRLDAGSWHSRAFAGEPLPSLEALARFIIGNRYAFNIEIKPTPGQALLTGQVVGREVLRLWADSGLAPLFSSFEPEALQGARETAPDIPRGLLLDNLREGWLAEAQALGCAAVISNYRLMDQPTVDAIHAAGMKALVYTVNDAEAAQALIARGVDGIITDAVDCFSPA
>NZ_CP013692.1|WP_082679727.1|582937_583669_+|GNAT-family-N-acetyltransferase
MCWYCPVPAKTTSPCWVPKPCPAPWARVRSAVTLVQVSAVPPAPSSKGLNMARPDPILIQVPERIEGESIVLAAPVAGLGPLMAAAIAESIEHLRPWMIWAQEAPSMEASEAVMRRMQADFIARRDLVYQIYAKDASGQCTELLGGTGLHRLDWDVRRFEIGYWLRSSAVGQGHASAAVRLLTAMAFSQLQARRVEIRMDDRNLASRAVAEACGFEFEGLLRRDSLGVDGEPRDTRVYARIEA
>NZ_CP013692.1|WP_082679726.1|581661_583101_+|MFS-transporter
MQTRQARRLPWFGLWRRLAAALTLPPNDLLRDMVYRRLFSSILISSLGGQITMLALPLTAALLLNATPTQMGLLTAMEIAPFVLFSLPSGVWLDRVRKLPVYIIGESMLAVTVATVPLAAWMGWLSMSWLYVVGFVLGTVYTTAGSAAQIVLTQVVERDRLVEAHAKNALASSGAEVVGPGIAGVLIKLMGAPMALAVDATLVLFSALILRGIQVKEVLKPSQDQRFWDELKGGLRFVREHSLLVSLALAVGGWQFFNNAAQVVQILYASRTLGLSAQEIGLSYVALGAGTVLASIFGSRLSARIGPGPSLVLGLAVSGLGWLMLALTPASLVGAPVFALMLFMFGVGAVLIFITFLALRQAVTPTAMLGRMTSTMRWLTIVPAGPGALIGGWLGEHVSLRSTLLFAGIGALLVSLLAWRLSTLRHVLVLPSTGQDDEPVLGAEAMPGALGEGEIGGDPSASFSSTASTKQQGPEHGKT
>NZ_CP013692.1|WP_058722037.1|579703_581383_+|gamma-glutamyltransferase-family-protein
MSSISGSSSTSSKNKPFDWHQAYPSVRSPLFARNIVSTSHPLAAQAGLRIMAQGGNAVDAAIATAACMTLLEPCSNGLGSDAFCILWDGKELHGLNASGTAPAAWTPEYFFKIYGREAKTPPKRGWGGVTVPGAVAGWVALSERFGKLEFAALMQPAIEIAERGYAVPVIVQRKWAMAAEVADLTAQPGFAEAFLPKGRAPAVGENFKFADAARTLRLIAETRGEAFYRGEVAAAVERFARATGGAITAADFAAYQPEWVKPISQDYAGHSLHEIPPNGQGIAALMALGILKHLDLRAHSVDSVAAQHLQIEAMKLAFADIYRYVADPRSMELSSAELLDPTYLAQRARLIQPQRAQDFKCGNPVKGGTIYLTVADESGMMVSFIQSNYMGFGSGLVLPGYGVSLQNRGHCFTLEAGHPNVVAPGKRPFHTIIPAFLTREGRPVMSFGVMGGNMQPQGHMQTLVRMLDYGQNPQAACDAPRWRFNEGLSINVEPHMKPATIEGLRALGHVIGDIHDSYQDFGAGQFIWRLDGGAASPDADAQGYVAASDPRRDGAAVGF
>NZ_CP013692.1|WP_058718769.1|578934_579603_+|hypothetical-protein
MSARIDNKLCIAFLLLCLSLGAAHAAEGEGKAGREREQLRRVQAALQAEQSKRQGLEAEKAALLSDKEQQVQQAKAQAQSATRALQQQRDKALAEAAALRRELDEAQAKQKEASQAQEQTALQLNQQLAQARRDNAELRQGNQSLTALLARNSQALTQAQASNRELHALALQALDRWVNKTVAEATLQQEPVLGLARVQMLDTAENMRARIDAQRLQPATAQ
>NZ_CP013692.1|WP_058718768.1|577099_578917_+|hypothetical-protein
MRLPNSRQRCLALALASALCVPTAHADEKRELEQLRATTLALIDALVGQGLLSRERADALLKQAQAPAAKPAAAPATWGTPLAGAAVAGAAAGAGATGAGSNGVIRVPYVSETLRAQMREEIKNEVLATAREERWADPRSLPEWVRGTTVEGDVRVRWQSERYAQPSYAVDPLTGQQIGVPCLNVGGNLPAECYRTQKDSPAWAPDLVNTTNNRDRLTLRARLGVAVKVSDEVSTGLRISTGTTSGPSSASQTLGNYFNKSSVVLDRAFIRWEPRYNLRMLAGRMANPFYGGDLLWPDDIGFDGLAAQGDLTLASGMFGFATAGAFALEEFNTDKRDKWLYGFQAGLEMAMGNNTIARAALGSYRFQNIEGVRATDLPLASSNPRSATQSYLSSQYAISARQKGNTLINLCPVSSENNATVPAPCANGGPVWGLASKFLPINLSAGLTFKQFDPVEIGVSVDWVRNSGFDLADVRKRAGTSTVDNLAERSTGAQLRFNLGTPKLANAGDWTSFVALRRFERDAWLDAFTDTTWHMGGTNYQGWQIGGQYAFDRRSTIGARLTSTRNLDDGVRVPLDPSNPSIVTGNLSSATLKIDVFQIDLNTRF
>NZ_CP013692.1|WP_156421860.1|576292_577006_+|TonB-dependent-receptor
MSSGLAEDHLNDSPRRTWLLRGAVALGFVAAVLLVAWTVKNMKPTAAPKQQTAKITILPDTPPPPPPPKDERKPEPPKDETKQVMRDEQLKQAEAPKPANEPIKMEGAAGDGPSAFAAGGVSKEYSGGAVASGAAQQGTSSDRAQERFFANSAKQMLRDAIERHLKSEATQATAEFNVWIAKDGAITRFELRPSGDVRLDAELAAALDETARSLKLLPPPVAAAQPMKFRLNVRPMG
>NZ_CP013692.1|WP_058718766.1|575880_576282_+|biopolymer-transporter-ExbD
MQISTEAKPYDTINVTPMLDLAYVLLVVFILMTTASVQGLSISMPKPSNKPATEKHDLRIVQVMPDGGILLNGVGVNLEELEQQLLRAKAADAQMSVAIKGDGRSQYQYVVAVVDLCNKLQLNMGLVTAKIGT
>NZ_CP013692.1|WP_058718765.1|575457_575871_+|biopolymer-transporter-ExbD
MSADVKTELTPFDDINVTPMLDLAYVLLVVFIILTTASVQGVKVRSPVTQAANNLAKPQTRAITITSDGAVYLDAYPVSLEQLSSSLAQYKAANPALPVVLKADATAQYDKVMQVLEVAKKLDITEIGLVTKRAVPE
>NZ_CP013692.1|WP_058718773.1|585756_586608_-|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE
MVEKNKGLTVLSHLVLLLGVLIVAFPLYIAFVASTHTAEAIVQAPMPLLPGSHFADNYSAALFGHAGGAGSKAPVAQMMWVSLVTALVIALGKIAISLLSAFAIVYFRFPFKSFFFWAIFVTLMLPVEVRILPTYQVISDLGLLNSYAGLTVPLIASATATFLFRQFFMTVPDELVEAARMDGAGPMRFFKDVLLPLSSTSIAALFVIQFIYGWNQYLWPLLVTTEENMYPVVIGIKRMISGGDAANDWNIIMATALLAMIPPALVVILMQRWFVKGLVDTEK
>NZ_CP013692.1|WP_058718774.1|586609_587497_-|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA
MALEKRVQFKSGWLPWALLAPQVLIISVFFFWPAGQAVLQSLQQQDAFGMSTEWVGLDNFRTLFSDAGYLASFKTTAVFSVLVAGLGISISLLLAVMADRVVRGALAYKTLLIWPYAVAPAIAGVLWMFMFAPSIGIVAYALNAMGFDWNHLLNSGQAMALVVMAAVWKQISYNFLFFLAGLQSIPKSLLEAAAIDGAKPWRRFWTIVFPLLSPTTFFLLVINIVYAFFDTFGIIDAATHGGPGKDTAILVYKVYYDGFKAMDLGGSAAQSVVLMAIVVALTVLQFRYVEKRVSY
>NZ_CP013692.1|WP_058722038.1|587508_588819_-|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB
MKLKHIAPALLIAGLSTQASAQTEIQWWHSMGGALGDWVTDLARDFNASQKDYKIVPAYKGSYDESMTSAIAAFRAGNAPHILQVFEVGTATMMASKGAIVPVGEVMKQGGAKFDPSIYVPAVAGYYTAANGQMLSFPFNSSTTVLFYNKDAFKAAGLDPNKAPSTWPEVALAAAKLKASGVKCPYTTSWVSWTQLESFSAWHNVEYASKNNGFGGLDTRLAFNTPLHLRHIENLANMSKQGLFVYKGRGNAADATFVSGECAMQTASSSLYANVKKNAKFAYGMAPLPFYPDVPGAPQNTVIGGASLWVMAGKKAPEYKGVAAFFNYLSRPEVAMESHKRTGYLPVTKAAYELTEKSGFYKANPGTDVAVTQMIRKTTDKSRGVRLGNFVQIRTIIDEEMEGVWSGKKTPKEGIDTAIQRGNEQLEKFQKANSKG
>NZ_CP013692.1|WP_058718775.1|589215_593151_+|FAD/FMN-binding-oxidoreductase
MNAPHPLMPVVTPPANPADVGVANSHESHAAPRLREIPYNYTSFSDREIVIRLLGNRAWELLNQLRQERRTGRSARMLYEVLGDIWVVQRNPYLQDDLLDNPKRRALLIEALEHRLHEVERRRDPSTDAQRDAHVGELLSAARGAVQQFARQFVEVAELRRRATKLLGKSTAKDNIKFDGLSRVSHVTDATDWRVEYPFVVLTPDTEAEMAQMVKSCVELGLTIIPRGGGTGYTGGAVPLVWNSAVINTEKLEALRGVEMLRLPGLDREVATIFSEAGVVTQRVADLAEQHGFVFAVDPTSAEASCVGGNVAMNAGGKKAVLWGTALDNLASWRMVTPEAKWLEVIRLNHNLGKIHDVEMASFELNYFDATGKKLERSERLDIPGRVFRKEGLGKDVTDKFLAGLPGIQKEGCDGLITSCRWIVHKMPAHVRTVCLEFFGNPRECVPSIVDIKDFMFEEAKRPGGAVLAGLEHLDDRYLKAVGYSTKSKRGGLPKMVLVGDIVGEDADAVARATSEVVRLANGRNGEGFVAVSADARKKFWLDRKRTAAISKHTNAFKVNEDVVIPLPRMGEYTLGIERINIELSLLNKLALVDALQALFEQTKLPLGKSDDAGDIPSAELLGDRVQQARSLLAQVGGQWKQWKDELDLARADEPSFFDQLQDHSLRASWKTQILKPLQAIFNGAAFEPILAECKRIHGEILRGRVWVALHMHAGDGNVHTNIPVNSDNYEMLQTAHGAVARIMKLARSLDGVISGEHGIGITKLEFLSDEELAPFAGYKAKVDPEGRFNKGKLLRLGGPESMTTFADLTNAYTPSFGLMGHESLIMQQSDIGAISDSIKDCLRCGKCKPVCATHVPRANLLYSPRNKILATSLLVEAFLYEEQTRRGISIKHWEEFEDVADHCTVCHKCANPCPVKIDFGDVTMNMRNLLRKMGQKSWRPGNAAAMFMLNASNPETIKVARAAMVGVGFKAQRLAHDVLKRFAKAQTAAPRASVGPAPIKEQVIHFINKKLPGGLPKKTARALLDIEDKDYVPVIRNPAATNAETEAVFYFPGCGSERLFSQVGLATQAMLWHAGVQTVLPPGYLCCGYPQRGSGQFDKAEKMITDNRVLFHRVANTLNYLDIKTVVVSCGTCYDQLQGYKFEDIFPGCRIIDIHEYLLEKGITLGSSKSYLYHDPCHTPMKLQEPMKTVKALVGDNVVESKRCCGESGTLGVTRPDISTQIRFRKEEELRATETQLRDSGKVAAADNLKILTSCPSCLQGLSRYGGDLQNGLLEADYIVVEMARQILGEDWMPEYVAKANNGGIERVLV
>NZ_CP013692.1|WP_082679728.1|593263_594295_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MTHTPAAQVTTKVHTRRQAILKLTASLGATLLAPGLASAAAETSGTWPNKPIKWIVAYPAGGGSDFLARQLAPALGKQLGQTLVIDNRPGAGGSIGTDAAAKSPGDGYTLLSGDNGAMIFNSAMYKKLPYAASDFTPVGMMARFPLILAVNPSSGFSSASQWLAEIKKNPGKYSYASPGIGSPHHLAMELIKQRSESFVVHVPYRGTAFAIQDVMSGIVPMAILDSAAGLSQIRAGKLRALAVLSKTRLQQLPDVPTFEELGLKGVDVSAWQGLFVPKGTPEPIVQRLTLEMNKAIALPEVKARLEEFGLQVIPGDGPSLARYLQQETQIWHTLIKERKLSAE
>NZ_CP013692.1|WP_058718776.1|594353_594797_+|HIT-family-protein
MNNIQPQCPLCQESGGLLVAQSAQWRVVRVLDDSNFPAFYRLIWASHVAEFSDLSPAERVDCMAAVAAVECALMEALAPTKINLASLGNMVPHLHWHLIARFDWDSHFPNPIWGQAKREVAGGAAARLALPLAELDQRVLAALAGLA
>NZ_CP013692.1|WP_058718777.1|594831_595887_-|ornithine-cyclodeaminase
MTTLLNTQDIARMAQALGVPALLQRMCSYIEADYLRWQEFDKCARVASHSADGVIELMPIADAQLYTFKYVNGHPKNTQAGLPTVMALGVLADVATGRPELLSELTLTTALRTAATSAMAAKQLARRNAKTMALIGNGAQSEFQALAFHHLLGIEEIRLFDLDPAASAKLMRNLQGQAGLRLKLCKSIAEAVRGADIVTTVTADKTNATILTPEMIEPGMHINGVGGDCPGKTELHPAVLEMAKVFVEFEPQSRIEGDVQQMPADFPVTEFWRVLKGQAQGRDNDAQVTVFDSVGFALEDYSALRLLRDLARELGLGQDVSLVPSMADPKDLFGQLQQRPAPMLAVTLAAA
>NZ_CP013692.1|WP_058718778.1|596054_596480_+|Lrp/AsnC-family-transcriptional-regulator
MDTLDQQLLALLRADARSSVATLAHKLKVSRGTVTNRIAKLEDAGVIVGYTVRLRPDETPNEITAWMSIAVEGNKTREVISILLGEPGVAGLFDTNGRWDLLAELRAATLGELAEVLERVRLIKGIGATETSIHLQSYMAS
>NZ_CP013692.1|WP_058718779.1|596516_597137_-|membrane-integrity-associated-transporter-subunit-PqiC
MKPSPHHFTASAAALVGALLLSACASDVPPPRSVALQSLQAMPPATQVANSSASKASVVVDRVILPDLIRRNHLLERIAAGEVHYRDVARWAEPLSEAVPRVLADDLSALLGRSVTLSKLRPQPSTSDPAWLLWLDVRSLEADGQGRVTLEAHWSWLREGKPEVRWQQGRFEASASSRDPERIAYAHSQVLQQLAQAMAAELARQP
>NZ_CP013692.1|WP_058718780.1|597133_598141_-|MCE-family-protein
MSKKANPTLIGSFVIAACLLAFVGVLLLARGTLFSRPERAVMYFEGSVYGLQVGAPVVFLGVKVGQVSKLGITVAPNSKKFLIPVVVEFSPEAERRLRVTGLSDLDSMRHLGLRAQLQSQSLLTGLLLVDLSLQPNTPEKLYALSNEMGEIPTLPSRFDQMTARLEQLPVEEMVADLGSTMRAIKVLVNSPELKNVIGNAGGTLDSLKRTLKAIERLELHIEQQRVLPQATESLAAMQQAAGKTGAAMENLSQLTAENSATLTSLRKGLDEVAAAARSLREMTGRDSTAVWQLEQTVRELENTAQSLRQLSDAVEAKPDALIWGRKPQPENRNQP

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Crispr_ID: NZ_CP013692_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013692_2

866772-866856

Orphan

Consensus_repeat	Method
AGGGGTTCTCCCCGAGTAGCTCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013692_2

>merge|NZ_CP013692|2|866772-866856|CRISPRCasFinder
AGGGGTTCTCCCCGAGTAGCTCTGTCACCAACTGACTAGAACTTGCGTGACAGACCGATCTAGGGGTACTCCCCGAGTAGCTCTG

>NZ_CP013692|2|2|866772-866856|CRISPRCasFinder
AGGGGTTCTCCCCGAGTAGCTCTG	TCACCAACTGACTAGAACTTGCGTGACAGACCGATCT
AGGGGTACTCCCCGAGTAGCTCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013692.1\|WP_058718974.1\|866997_868521_-\|exopolyphosphatase	unknown	unknown	gnl\|CDD\|223326
NZ_CP013692.1\|WP_058718978.1\|871315_872428_-\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	unknown	unknown	gnl\|CDD\|226985
NZ_CP013692.1\|WP_058718979.1\|872890_873142_+\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|179195
NZ_CP013692.1\|WP_058718973.1\|866287_866749_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|224973
NZ_CP013692.1\|WP_058718983.1\|877123_878050_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236819
NZ_CP013692.1\|WP_082679766.1\|858821_859310_-\|copper-chaperone-PCu(A)C	unknown	unknown	gnl\|CDD\|377298
NZ_CP013692.1\|WP_058718972.1\|864185_866270_+\|polyphosphate-kinase-1	unknown	unknown	gnl\|CDD\|235469
NZ_CP013692.1\|WP_082679764.1\|854380_855364_-\|HupE/UreJ-family-protein	unknown	unknown	gnl\|CDD\|379373
NZ_CP013692.1\|WP_058718980.1\|873126_874041_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_CP013692.1\|WP_058718970.1\|860409_862146_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|182944
NZ_CP013692.1\|WP_058718967.1\|856349_858620_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013692.1\|WP_058718982.1\|876174_876972_+\|GTP-cyclohydrolase-I-FolE2	unknown	unknown	gnl\|CDD\|237466
NZ_CP013692.1\|WP_058718976.1\|869798_870233_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP013692.1\|WP_082679765.1\|855360_856263_-\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|379040
NZ_CP013692.1\|WP_058718975.1\|868973_869753_+\|ZIP-family-metal-transporter	unknown	unknown	gnl\|CDD\|223505
NZ_CP013692.1\|WP_156421879.1\|862145_863096_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226706
NZ_CP013692.1\|WP_082679767.1\|859444_860185_+\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|131644
NZ_CP013692.1\|WP_058718981.1\|874079_876038_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|235470
NZ_CP013692.1\|WP_082679768.1\|863249_864167_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|225460
NZ_CP013692.1\|WP_058718977.1\|870361_871243_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450

Protein	Function_ID	Function_description	E-value
NZ_CP013692.1\|WP_058718974.1\|866997_868521_-\|exopolyphosphatase	gnl\|CDD\|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	3.57265e-130
NZ_CP013692.1\|WP_058718978.1\|871315_872428_-\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	gnl\|CDD\|226985	COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only].	1.57785e-51
NZ_CP013692.1\|WP_058718980.1\|873126_874041_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	3.74627e-85
NZ_CP013692.1\|WP_058718979.1\|872890_873142_+\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|179195	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional.	1.13647e-16
NZ_CP013692.1\|WP_058718973.1\|866287_866749_+\|histidine-phosphatase-family-protein	gnl\|CDD\|224973	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms].	1.92847e-23
NZ_CP013692.1\|WP_058718983.1\|877123_878050_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|236819	PRK11013, PRK11013, DNA-binding transcriptional regulator LysR; Provisional.	4.09403e-151
NZ_CP013692.1\|WP_082679766.1\|858821_859310_-\|copper-chaperone-PCu(A)C	gnl\|CDD\|377298	pfam04314, PCuAC, Copper chaperone PCu(A)C. PCu(A)C is a periplasmic copper chaperone. Its role may be to capture and transfer copper to two other copper chaperones, PrrC and Cox11, which in turn deliver Cu(I) to cytochrome c oxidase.	1.81227e-12
NZ_CP013692.1\|WP_058718972.1\|864185_866270_+\|polyphosphate-kinase-1	gnl\|CDD\|235469	PRK05443, PRK05443, polyphosphate kinase; Provisional.	0
NZ_CP013692.1\|WP_082679764.1\|854380_855364_-\|HupE/UreJ-family-protein	gnl\|CDD\|379373	pfam13795, HupE_UreJ_2, HupE / UreJ protein. These proteins contain many conserved histidines that may be involved in nickel binding.	4.13037e-48
NZ_CP013692.1\|WP_082679768.1\|863249_864167_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|225460	COG2908, COG2908, Uncharacterized protein conserved in bacteria [Function unknown].	1.50801e-88
NZ_CP013692.1\|WP_058718970.1\|860409_862146_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0
NZ_CP013692.1\|WP_058718982.1\|876174_876972_+\|GTP-cyclohydrolase-I-FolE2	gnl\|CDD\|237466	PRK13674, PRK13674, GTP cyclohydrolase I FolE2.	3.5959e-121
NZ_CP013692.1\|WP_058718976.1\|869798_870233_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	8.63716e-34
NZ_CP013692.1\|WP_082679765.1\|855360_856263_-\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|379040	pfam13145, Rotamase_2, PPIC-type PPIASE domain.	0.000813749
NZ_CP013692.1\|WP_156421879.1\|862145_863096_-\|hypothetical-protein	gnl\|CDD\|226706	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown].	5.14725e-17
NZ_CP013692.1\|WP_082679767.1\|859444_860185_+\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|131644	TIGR02595, conserved_hypothetical_protein, PEP-CTERM protein-sorting domain. This model describes a 25-residue domain that includes a near-invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In nearly every case, this motif is found within nine residues, and usually within five residues, of the extreme C-terminus of the protein. Proteins with this motif typically have signal sequences at the N-terminus. This region appears many times per genome or not at all, and co-occurs in genomes with a proposed protein-sorting integral membrane protein we designate exosortase (see TIGR02602). PEP-CTERM proteins frequently are poorly conserved, Ser/Thr-rich proteins and may become extensively modified proteinaceous constituents of extracellular material in bacterial biofilms. [Cell envelope, Surface structures].	0.00317036
NZ_CP013692.1\|WP_058718981.1\|874079_876038_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|235470	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_CP013692.1\|WP_058718975.1\|868973_869753_+\|ZIP-family-metal-transporter	gnl\|CDD\|223505	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism].	3.96057e-31
NZ_CP013692.1\|WP_058718977.1\|870361_871243_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	1.74145e-80

>NZ_CP013692.1|WP_058718973.1|866287_866749_+|histidine-phosphatase-family-protein
MDLILWRHAEAELLREGSTDMARCLTAKGERQAARMSDWLNHRLAASTRVLVSPAERARGTAAALGREVRIVNSIAPDASVQDLLAASRWPQSSEPVLMVGHQPTLGLLASLLLTGTAQPWAVKKGGVWWLRSRQRDGHSEVVLQAVQAPDFL
>NZ_CP013692.1|WP_058718972.1|864185_866270_+|polyphosphate-kinase-1
MSAAESMPTNPSVLPPPALLNREQAILEFNRRVLAQSMRLDVPLLERLRYICIVSSNLDEFFEVRFADMLDAARDPLGSVDNRDVERVARASHALIDEQYAIFNEQLMPLLAEQKIVILNHADRNEAQRAWVAKFFEREVRPLLVPVGLDPAHPFPQVANKSLHFIARLSGKDAFGRDNRIAIVKVPRVLPRVIRLPAAISDGRQAFALLTSVIRAHLEELFSGRKVEAFSQFRVTRDSDLEVDEEEIANLRNALRSGLTTRHFGRAVRLEVVNTCPGELAQFLLEQFDLPAAALYRVNGPVNLVRLNELIDQTDAPELRFEPHEPAWPQSLPRQKSIFERLRNKGDVLMHHPFESFDPVVQFLREAVDDPDVLAIKQTIYRTGSKSVLGDLLIEAARRGKEVMAVVELKARFDEEANINWAERLEAVGAQVVYGIVGFKTHAKLLLVTRREGAKFRRYAHLSTGNYNPKTARFYTDLGYLTADPELTSDADSVFRQLASLGKIKTPKRLLLAPFNMHSRMMEHLAQVAAAARAGKPARIVVKINALTDAELINGLLAAGQAGAKVDLIVRGACMLPPGLPGVSDNIVVRSVVGRFLEHTRVCYFQWGASEDEVALYLASADWMSRNMFRRIEIAWPVSDPKLRQRIIDEALVPYLHDGLDAWQLGPDGRSSRVSTSGLSAQQALMQRFKAQRD
>NZ_CP013692.1|WP_082679768.1|863249_864167_+|UDP-2,3-diacylglucosamine-diphosphatase
MQNDHALMRAAATAAGALTSLPTSVDVADSEGVDGGGKPSRRYRTVWISDLHLGTPGCQAHALLDFLREVECEELFLVGDIIDGWQLRRSWYWPQAHNDVVQKLLRKARKGCKVYFVPGNHDEFARKYLNHNFGGIEVVKEWIHETADGRKLWITHGDLFDGVIQCAKWLAHVGDWAYELTLKLNRYLNHLRAKFGLPYWSLSKYLKLKVKRAVSYVSDFEEAVAREARKRGVHGVVCGHIHFAEMRDIDGILYCNDGDWVESLTALVEHADGRLEILDWGQVLAAGSAPLTEPGLPAARPEVLA
>NZ_CP013692.1|WP_156421879.1|862145_863096_-|hypothetical-protein
MHLMISHASALDEACKHTLSHLALPHLAALLGLLKPAGPALGSDEQSLNTPFEHSLARLRGSVQPHADSDGLLPTAAWAAEATGEDPHLPWALLTPLHLAVGSDQVNAYAPESLALTDEESRQFFAALAELWPANEGWRACWLSRYQWLLTHDSLAGLSSASVERVLLRNVDPWMPTARRLRTLQNEVQMLLHREPLNAQREARGALALNSVWISGCGAAPDTLTPLPANLQIDSSLQASQLAADWAAWAEAWTQLDEGAVSELLQRARLGEPVQLTLCGERFAQSYQLPPRGALQKTLQRWLPPRANAAAALEAL
>NZ_CP013692.1|WP_058718970.1|860409_862146_-|single-stranded-DNA-specific-exonuclease-RecJ
MAANAPQLLTREVPPRAAWALEQAGHTPLLARLFAARGVREPLELDDGLARLLPPESLLGASAAAQLLADAILAGERICLVADYDCDGATACVVALRGLALLGAKPEQLGYVVPDRAVHGYGLTPAIVELALPQRPQVLMTVDNGIASIAGVAHAKALGLKVLVTDHHLPALIDGQIVLPAADAIVNPNQPACSFESKNLAGVGVAFYVLLALRSELRRRGAFDAASQPKLDGLLDLVALGTVADVVKLDANNRRLVAQGLKRMRGGRVQPGVQALFTAAGRDCSRATGFDLGFALGPRINAAGRLSDMTLGIECLLSDEPSRALELAKQLDAINRERREIEADMKEQAEAKLDHIMSLLDGEPPAALCLFEADFHEGVVGIIASRLKDRVHRPTFVFAQGADGQLKGSGRSIPGFHLRDALDLVSKRQPELLKKFGGHAMAAGCTLADPESFAAFNQALQTVAAEWLDAAALTRTLRTDGPLSPEFFTPDTVRSLDAQVWGQAFEAPLFCDQVDVISQRIVGERHLKLRIRQAGVLRDAIWFSHIDPVPESGRMAYRLSLDEYQGQQRVQMIVEALV
>NZ_CP013692.1|WP_082679767.1|859444_860185_+|PEP-CTERM-sorting-domain-containing-protein
MPRLRPEATGLRLVCCALHPSTHAPTSTRRFPMKLTRLLAPSLSALAAVALFSATPAFAENAVFNIDFEHNWAYDNSAVSEYYNGGTAADGSSNSANLGVSFVGVFGLSNDELGPYFNNAPTPLGTAYVDALATSAYINVAAGVTNSLSFYYASPTAVVGAIKAYSGLNGTGTLLGTFDLAANGSAYDVWSKQTISFNGTAQSFDLVGSAGTVGFDNISAVPEPSALALMLAGVVGLAGMRNRRRG
>NZ_CP013692.1|WP_082679766.1|858821_859310_-|copper-chaperone-PCu(A)C
MPLPRSKGLAVPLLPALHRRALLQASLASGLSLVLGRPAQACEFFTTTLRVTHPWTRASKPGASTAIVCMRFDEVTVADRLIRVSCPLASGAEIGGHAAHPKVDFLIPAGQESVLSEEASYVRLLGLREPLEIGRSYPLTLEFALGGVVQADLSVDYEALPA
>NZ_CP013692.1|WP_058718967.1|856349_858620_-|hypothetical-protein
MPIRFSKNQLALAALATLSMGGLVAAPGISTAASAVPVGKTPGQYVTGDFHNHTTCSDGAISMQKLVKKVTDKTSKGGDTPWGLDWFVQAGHGGNGNRNCTLVEDASLSTPAYPYVAGKGPTTTWENSGVTPKGDVSGSSPNRNMWRWQSIQEFQYPLVEYLAASKNLPLFIGMESVVAGHEHASMSIITGQMPSQLDNATMPTSPGYTALGNANALSQWSYCFDRNDTDKSRGNIAGSALGNNWNCSVAGSNSASDVSWNVTAQKLMPASGTGNGNKGHLKTLEAIKWMAQNHATGSYYVPAHLERAGPFNPDGNQGFNIEHLRNLNNAGPDIAFGFETQPGHGASSNRGEYQVLRNNFGANGGLVDSVGGTTYGGTGVYGAQVGGVWDALLGEGRNFWYFASSDWHNRGAFGPDDRRSTQDFYPGEYARDFVMVRNGADKLRPQTIVDGLRTGNSFAASGQLIDRLAFVACASYAGPAARSNAAVEALATAAATNNRDVDASGCATMGEKLVVRPGAEIVVSVVVRDPEGESFSPYTFPNPALAQIGRVQPLNKPVLDHIDLIRGLVTGYKTPGAADYSGEWPRNTAWLKADGTTADLSVVPAAAKNTSAAVIKTFNGDGATPWVAFASGVDNTKFLKMTYRIPAVTASQYVRLRGSNLPAAVPYETDSKGNPMADVYTNANDTSRLTIPCKTPHSAGNQFDGCPDHLATATGASPIAGQKAVSYDVAAWSDLWFYSNPIYVQVTGSSVVAGVK
>NZ_CP013692.1|WP_082679765.1|855360_856263_-|peptidyl-prolyl-cis-trans-isomerase
MPSSLPAQAQDHAQVQATVQTTPAAPRRALPEWAREPLLHFMLLGGLLFAADHLLSRRADDPQRIVMDSAVDAEASQVFSASRGRAPDAKELAALRQVWLDNEVLYREGLALQVDKGDSGIRERVIFKALSVVEANLKLPAVNDKILQDWFNSHRDKYEEPARFDFQEALLTGNDGAPASEAQVRAFVAALNGGTPGDAKAGLRVFKGRPEANLQQSYGPDFAKNLAEGPVGEWRALASREGWRAIRLDGLSAAKAADFQALRNVVQQDWTDATMSEQRSAAVQALAKKYKIVTEQAAKP
>NZ_CP013692.1|WP_082679764.1|854380_855364_-|HupE/UreJ-family-protein
MSKPSASLGLRLGLLLKLLMLTLGLALSAGAKSHEMSMAELQLRELSRGEFLWQWSAGEKSAPADVLRPIWPEACQTDSNMLRCGTGGLQGSMSVDGVGKSYSAVLVKVFWLDGQSRVYTITAGQTKVQLYGAADDARGMGEIAQAYTLLGIEHILSGIDHLLFVISLLFLVGFQRRLFWTISAFTLAHSLTLASSALGLLVLRSPPVEATIALSIVLVAGEALHRRETMARRWPALVAFLFGLVHGLGFAGALKEIGLPEQHLSVALLTFNVGVEIGQLMTVAAAWALWRLATRWPQASKARQPLLYLIGTLAAYWSWLRIATIFG
>NZ_CP013692.1|WP_058718974.1|866997_868521_-|exopolyphosphatase
MNLLPIPVTPDIAAPLAAIDMGSNSFRLEIAQLPRGQYKRQEYLKETVRLGAGLDEEGMLTEAAMQRGLECLQRFALRLKGFPAARVRAVATQTLREAKNRNAFLARAQEALGYPIEVISGREEARLIYAGVARLQPSDEPRLVIDIGGRSTEMILGRGRRPASAESFQIGSVSLSMRFFPDGVFTADAFRAAQVAAGAELEEALTLFKPALWQRALGSSGTVGAVAQILAASGVTDGRITPEALRWCIEQCIAAGNMSRIDLLGLKEDRRAVVGGGLCILYTLLTQFGITELFPAKGALRQGVIFDLVERLEAARTSDGAAKQDMREASVEALQKRFAVDLAQAARVQATAQSLYKQLAPRAPRERQRELAWAAALHEMGMMVSHHDHHRHSAYLLAHVDAAGFSQSQLKRLGDLALGQRGGLRKLDGILGDESLLLQLLSLRLAVIKAHAREAVDSQALRLKREGKRFTLSLPKSWALQNPRTAYLLQEEAAAWARSGVLELVLA
>NZ_CP013692.1|WP_058718975.1|868973_869753_+|ZIP-family-metal-transporter
MTLFYIVLATFAGGLLSVLIAASLTVSLLSRIVKNLVSLSTGVLLSTALLHVLPEAFESKASPHALFMVLLGGLMFFFLLEKVELYRHTHHHEGDGHHHHHHFDAEQAGRGGLSVLVGDSIHNFCDGIIIAAAFLADPHLGVVTSLAIIAHEIPQEVGDYIVLLNAGFSRSKALLFNAISGLAAVLGGVVGYFVVGPWESLFPYLLVAASSSFVYVAVADLIPQLQRRLPWRETVAQLAWLAVGIGLVVVVVAVSAHDH
>NZ_CP013692.1|WP_058718976.1|869798_870233_-|universal-stress-protein
MFKRILVPTDGSEISAKALNTAIGLARIHGAKLFALSVKEPFPYSAVSEMQPTPPQEFFDAQERIAGARVKAALDLAAAAEVQCEGFTVEALHAWEAIIEYVADNQCDLVVMASHGRRGVQALLLGSETQKVLTHCTTPVLVVR
>NZ_CP013692.1|WP_058718977.1|870361_871243_-|sulfurtransferase
MSPVFQTLITVSELQGLLAQAEGNGSKPPLLIDASFDLADPAAGERAYRTGHLPGAHYLHLDRDLSGAKSGSNGRHPLPERQVFAQKMADLGLCAGRQVVVYDAQGSMYAARLWWMLRWLGHSAVAALDGGLSAWLSAPHADKTSGSSDIIPAPSPATFQASESLVSSIDADTLQAQLGTIRLIDARAPERFRGEVEPLDAKAGHIPGASNRLFKNNLAADGLHFKPAAQLREEFRALLGAYTADQVVHQCGSGVTACHNLLAMSHAGLTGAKLYPGSWSEWSSDPLRPIATA
>NZ_CP013692.1|WP_058718978.1|871315_872428_-|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha
MSDLSISLAALERSDTQLPVSSYFDEELFRKEQDVIFKLGPRYLGHALAVPEVGDYYALPQEQEGRALVRTPQGLELISNVCRHRQAVMLRGRGNTRSNIVCPLHRWTYDLKGELIGAPHFDHDPCLNLNRYELQEWNGLLFEANGHDVASHLQALGPKAELDFTGYVLDKVHVHECDYNWKTFIEVYLEDYHVGPFHPGLGHFVTCDDLAWEFGRNHSVQTVGIHKDLAKPGSAIYQRWHEQVLKFRGGEPPKAGAIWLTYYPHIMVEWYPHVLVVSTLFPQGTQKTANIVEFYYPEEIAAFERDFVEAHQAAYMETCIEDDEIALRMDAGRKALMLRGDNEVGPYQSPMEDGMQHFHEWYRREMKLGR
>NZ_CP013692.1|WP_058718979.1|872890_873142_+|exodeoxyribonuclease-VII-small-subunit
MPKSSQSNKNASSDAVAPSYEQALAELERLVMGMEAGQLPLDQLLESYRRGAELLGFCRARLQAVEQQVKVLEGEGLKQWGDS
>NZ_CP013692.1|WP_058718980.1|873126_874041_+|polyprenyl-synthetase-family-protein
MGRFLSVDAGIFEQWMQRSLAACEQALDRFVPIDSPAGLGEAMRYAVLDGGKRLRPLLVLAACDAVRGDTEAALRAACAVELIHAYSLVHDDMPCMDDDVLRRGKPTAHVKFGEAQAMLAGDAMQALAFEVLTPCALDSAMPPALQARLCSLLARSAGHAGMAGGQAIDLASVGQQLDECTLRDMHRRKTGVLLQASVMMGAACGQASAQATAALAEYGSALGLAFQVVDDILDVTQDSAVLGKTAGKDQDANKPTYVSVMGMEHARELAEQLRAQAHKALAESGLTHTAWLSLLADMVVERQH
>NZ_CP013692.1|WP_058718981.1|874079_876038_+|1-deoxy-D-xylulose-5-phosphate-synthase
MTSSYSLLQTINSPADLRRLPRTELVKLAGELRAYVLDTVSRSKVGGHLGSNLGAVELTVALHYVFNTPHDRLVWDVGHQTYPHKVLTGRRDQMSTLRQLGGISGFPRRDESEYDTFGTGHSSTSISAAHGMAMAAKIKGEDRKAVAIIGDGSMTAGMAFEALNNAGVPHGGLMGDVLVILNDNDMSISPPVGALNKYLARLMSGSFYSAAREGAKTVLKNTPLYEFARRFEEHTKGMVVPGTIFEEFGFNYVGPIDGHDLDALIPTLENLRDKKGPQFLHIVTKKGQGYKLAEADPVKYHAASGVFDPAVGFVKSTAPAKTTFTQVFGEWLCDMAEQDLRLVGITPAMREGSGMVEFHKRFPTRYHDVGIAEQHAVTFAAGLACEGLKPVVAIYSTFLQRAYDQMLHDVALQNLPVVFALDRAGLVGADGATHAGNYDIAFTRCIPNMAVLTPADENECRQALFTAYQHTGPVTVRYPRGAGAGVAVQKEMQAQPWGKGEIRRSSSKPASRSGANAGLSQSNPRIAILAFGTVLYPAMAAGESLDATVANMRFVKPLDHELVAELARTHDALVTVEEGCLMGGAGSAVMESLAAAGLNVPVLQLGLPDEFVEHGDAGVLMAQCGLDAAGIEQSILKRFGGRPALVRPAANQ
>NZ_CP013692.1|WP_058718982.1|876174_876972_+|GTP-cyclohydrolase-I-FolE2
MNQVTSALHIPDTQSERDERHLMIQRVGVKDVRYPLQVLVGKQAQPTVGTWTLDVALPAEKKGTHMSRFVAWLDALKAPLEPASLRELHGQMLSKLEAQEGRIEVRFAFFIRKRAPVSGIESLLDYQGALISETRAGVTSVWAEVAVPVKSLCPCSKEISDYGAHNQRSLVTIRAEMAEAAAVSWQELVRFAEESASSEIWPLLKRSDEKWITEHAYENPKFVEDLVRDVALRLNADARIGRYTVDVENFESIHNHSAYARIERA
>NZ_CP013692.1|WP_058718983.1|877123_878050_-|LysR-family-transcriptional-regulator
MSLAITHRHIEVFRAVMTAGSVTGAATLLHSSQPTLSRELARLEYLLGYALFERGQGRLRPTARALALFDEVQRSYQGLDRISSRAQQLGRADQALLSVLCLPALSHALLPGACRRFFARHASARLSITPQESPLLEEWMSAQRFDLGLTEQTQAVPGTELLPLLSLDELCVLPAGHGLLAKAVLTPADFEGQDFISLSAEDPYRQQFDALFAAQGVQRRLRLETHSAIAVCAMVQAGLGLAIVNPLTALSCRGDGLQLRQLSVSVPFQVNALTPKFRPRQDLLEDLLASLREQISSVEAELASALTV

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Crispr_ID: NZ_CP013692_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013692_3

2940956-2941065

Orphan

Consensus_repeat	Method
CATGACCCACCTTGCATCAACGTGTGATAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013692_3

>merge|NZ_CP013692|3|2940956-2941065|CRISPRCasFinder
CATGACCCACCTTGCATCAACGTGTGATAAGTTAACTCACGCTGAGTCAACTTGAGGCACCGTGAGGCACCTTGGATCAGCATGACCCACCTTGCATCAACGTGTGATAA

>NZ_CP013692|3|3|2940956-2941065|CRISPRCasFinder
CATGACCCACCTTGCATCAACGTGTGATAA	GTTAACTCACGCTGAGTCAACTTGAGGCACCGTGAGGCACCTTGGATCAG
CATGACCCACCTTGCATCAACGTGTGATAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013692.1\|WP_058720418.1\|2932420_2934478_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP013692.1\|WP_156422014.1\|2941291_2941435_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013692.1\|WP_058722306.1\|2940347_2940593_-\|type-II-toxin-antitoxin-system-CcdA-family-antitoxin	unknown	unknown	gnl\|CDD\|377822
NZ_CP013692.1\|WP_058720423.1\|2946356_2951144_-\|DUF3320-domain-containing-protein	unknown	unknown	gnl\|CDD\|380141
NZ_CP013692.1\|WP_082679998.1\|2927589_2929434_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP013692.1\|WP_058720419.1\|2937258_2938128_+\|dioxygenase	unknown	unknown	gnl\|CDD\|153375
NZ_CP013692.1\|WP_156422012.1\|2930208_2932359_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP013692.1\|WP_058720416.1\|2925407_2927540_+\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|236712
NZ_CP013692.1\|WP_058722307.1\|2945104_2946181_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP013692.1\|WP_156422016.1\|2958597_2960040_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|227903
NZ_CP013692.1\|WP_058720415.1\|2925005_2925368_+\|response-regulator	unknown	unknown	gnl\|CDD\|381110
NZ_CP013692.1\|WP_156422013.1\|2938296_2940318_+\|integrase	unknown	unknown	gnl\|CDD\|271184
NZ_CP013692.1\|WP_156422017.1\|2960443_2960812_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013692.1\|WP_082680346.1\|2956702_2957851_-\|DUF3466-family-protein	unknown	unknown	gnl\|CDD\|378770
NZ_CP013692.1\|WP_058720424.1\|2951269_2952511_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341155
NZ_CP013692.1\|WP_156422015.1\|2954776_2955553_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013692.1\|WP_058720425.1\|2952500_2954072_-\|SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223363
NZ_CP013692.1\|WP_082680000.1\|2934537_2937129_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|225669
NZ_CP013692.1\|WP_058720422.1\|2941715_2944949_-\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NZ_CP013692.1\|WP_058720417.1\|2929493_2930024_+\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|182587

Protein	Function_ID	Function_description	E-value
NZ_CP013692.1\|WP_058720418.1\|2932420_2934478_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	9.81173e-106
NZ_CP013692.1\|WP_156422012.1\|2930208_2932359_+\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	6.16955e-106
NZ_CP013692.1\|WP_058722306.1\|2940347_2940593_-\|type-II-toxin-antitoxin-system-CcdA-family-antitoxin	gnl\|CDD\|377822	pfam07362, CcdA, Post-segregation antitoxin CcdA. This family consists of several Enterobacterial post-segregation antitoxin CcdA proteins. The F plasmid-carried bacterial toxin, the CcdB protein, is known to act on DNA gyrase in two different ways. CcdB poisons the gyrase-DNA complex, blocking the passage of polymerases and leading to double-strand breakage of the DNA. Alternatively, in cells that overexpress CcdB, the A subunit of DNA gyrase (GyrA) has been found as an inactive complex with CcdB. Both poisoning and inactivation can be prevented and reversed in the presence of the F plasmid-encoded antidote, the CcdA protein.	3.12089e-23
NZ_CP013692.1\|WP_058720423.1\|2946356_2951144_-\|DUF3320-domain-containing-protein	gnl\|CDD\|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	9.71135e-50
NZ_CP013692.1\|WP_082679998.1\|2927589_2929434_+\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.79635e-102
NZ_CP013692.1\|WP_058720419.1\|2937258_2938128_+\|dioxygenase	gnl\|CDD\|153375	cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.	8.72237e-101
NZ_CP013692.1\|WP_058720416.1\|2925407_2927540_+\|chemotaxis-protein-CheA	gnl\|CDD\|236712	PRK10547, PRK10547, chemotaxis protein CheA; Provisional.	0
NZ_CP013692.1\|WP_058722307.1\|2945104_2946181_-\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.91085e-50
NZ_CP013692.1\|WP_156422016.1\|2958597_2960040_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|227903	COG5616, COG5616, Predicted integral membrane protein [Function unknown].	8.39002e-38
NZ_CP013692.1\|WP_058720415.1\|2925005_2925368_+\|response-regulator	gnl\|CDD\|381110	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	5.67539e-69
NZ_CP013692.1\|WP_156422013.1\|2938296_2940318_+\|integrase	gnl\|CDD\|271184	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain containing six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	7.66109e-52
NZ_CP013692.1\|WP_058720424.1\|2951269_2952511_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|341155	cd17266, RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Staphylococcus aureus subsp. aureus MSHR1132 S subunit (S.Sau1132ORF3780P) TRD2-CR2. Staphylococcus aureus subsp. aureus MSHR1132 S subunit (S.Sau1132ORF3780P) recognizes 5'... CAAGNNNNNRTC ... 3'. The RM system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. For example S.Sau1132ORF3780P-TRD1 recognizes CAAG/CTTG and S.Sau1132ORF3780P-TRD2 recognizes GAY/RTC. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	1.06567e-66
NZ_CP013692.1\|WP_082680346.1\|2956702_2957851_-\|DUF3466-family-protein	gnl\|CDD\|378770	pfam11949, DUF3466, Protein of unknown function (DUF3466). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 564 to 612 amino acids in length.	1.7916e-06
NZ_CP013692.1\|WP_058720425.1\|2952500_2954072_-\|SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	3.82307e-141
NZ_CP013692.1\|WP_082680000.1\|2934537_2937129_-\|FtsX-like-permease-family-protein	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	0
NZ_CP013692.1\|WP_058720422.1\|2941715_2944949_-\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
NZ_CP013692.1\|WP_058720417.1\|2929493_2930024_+\|chemotaxis-protein-CheW	gnl\|CDD\|182587	PRK10612, PRK10612, chemotaxis protein CheW.	3.4369e-64

>NZ_CP013692.1|WP_058722306.1|2940347_2940593_-|type-II-toxin-antitoxin-system-CcdA-family-antitoxin
MKDQDISAPSRRTTKINISAALVARAKEMGVNVSQAAEQGVEDAVAKRMGERWLEENQEALISSNAFVEAHGLPLAKYRPF
>NZ_CP013692.1|WP_156422013.1|2938296_2940318_+|integrase
MARSSNLQRRKVSGVHVVRLYVPAWLQAAVGHKEVHRSTGCRDPRQAKIVAAEIVGRWHAAQDKYARMDLKKIEAGSLDLLGEGYILVDHAATLLGATHGEVITHLLARSAGFYVYRDDWDGWLVDDMDQLYHEHDETGFVGVDLCDSELAKHGRRSKLSPRHLQLRFAEEVLAINQAARQPVDVSCFMLPQSRTSGFVVEIPGRAISVDQLMVNKADVEQLRSWLASRITPEMLAEAAPPRAPAPADTPYHGLAHARHAHVPLADVLSIYIDRNRGKWKPNTLHTNSDRCAILLELMGNLPLKDIDRGALWHVVEKLRKLPDGRQHVRRRFKRPETTFTELIELAEQHQLPRLSTQAIEKLVDGFGEIFTWAVTQTCLTANPALKLGSEVFSSLGGKRSKASQDRDQLSPDDLKLIFSVEWFAKGVGTKTKEGLYYAYRPYYYWLPLLGLLAGGRLNELAQLYLADICCSPSGVNYLDFNLDGEDKVNADKDGADAQGASGQDKSLKTINAVRQVPIHPRLIELGFIDYVQALRKAGHARLFPELQHDKTKGYGKHAGSWFNERFLGKQLGIKRDGRKTFHSFRHNFSTTLGDADIPSIVKSQLMGHSFGKAENESRYDKGRRIDQLAEHLGALNFGLPDGVNKFSITDGLQAVSDALTLKKSRRSGVKRPT
>NZ_CP013692.1|WP_058720419.1|2937258_2938128_+|dioxygenase
MPNTSHFPPLFISHGSPMTALEPREAGAFMQDLGRTLDAKFGRPRAILAISAHSLARQPVLLAGAKHHAVYDFGGFDPKLNTLRYDAPGATELAAQVQALAAQAGLPLLSLPQGGLDHGIWTPLRYMYPAADVPVLPLAFVPSQSPAQQFTLGEMLAPLAEQGVLIMGSGSITHNLRLVFGQGQPPAIDAPEIQASAEFRAWLQARAAAADWPALLDYRRQAPHAVAMHPTDEHLLPWFVPAGAGGRNSPAVRIHESLTFGSLAMDAYAFGPAALQLAQALQDPGAATL
>NZ_CP013692.1|WP_082680000.1|2934537_2937129_-|FtsX-like-permease-family-protein
MSKIDAVLLPLTPTVHRPAPPKPPSVVVLAWRQLWRDWRAGELRLLMVAVFLAVAALCAVAFLSERMDGGLRRDAAQLLGGDAVLVSDQATPAPLSELARSLGLQHTTLINFPSMARAPEAQGGGSRLVAVKAVGTAYPLRGKLLLADGRQVGAPQPGEVWVDAQLLDSLGLAVGGRVLVGDSSLRIAGVIANEPDRGAGFLNFAPRLMLADQDLAATGLIQPASRVSYRLAVASVSGEPQALPRFVKQATAFIEQSGWRGLRLDSLETGRPEMRQTLDRATKFLKLVAMLSALLAAVAVALAARDFASRHLDDCAMLRVLGQPQRRIALAYGLEFGAAGLVASIGGVLAGLALHLVFVNLLSGLFSVSLPPPTLWPALLGLALGLSLLMGFGLPPVLQLAAVPALRVIRRDLGAVKAGSVLALVAGVLGFAAILLALAGDWQLGLGAAAGFALAVGLFALLAWAAVLLLRRLVPLAAQGRGAPRWLLLATRQVAARPGLVVVQVASLAVGLLALALLVLLRTDLIDSWRAATPKNAPDRFVINIQPDQGAALRAQLKQSGVQHYDWYPMIRGRLLSINGQEIKPQSFKDERAQRLVDREFNLSHADHLPEQNLISRGNWVNDEAEGLSVEDGLAQTLGLKLGDQLKFDVAGVAVGGRITSLRKVDWSSMRVNFFVLFPRAAMPDLPSTFVTAYRAPTAAAGVALDRQLSQQFPNLTVVDVSAQLNQVQAVLDQVIRAVELLFGFTLATGLVVLLASVSSTREQRTREFALMRALGASGQLLRQVQRAELLGVGALAGLLAGAVAVGLGALLAHFVFGFEWRLNAWVPLASLVSGAVLAQLAGWWSLRGVLQRPVMQSLREAA
>NZ_CP013692.1|WP_058720418.1|2932420_2934478_+|methyl-accepting-chemotaxis-protein
MFDSIKTRLIGLSISVVVLTLFVATAANYVIVRDHTHSKVLSSLNALVAGRAAVINEWVQNQRNIVSALVPAADVAEPVPFLVQAAKSGKLEAAYIGFADKRILFNSPQNLPPGYDPTGRPWYTAAASASGTVLTEPYMDAARQQLVVTFALGVKDGGQTKAVLASDVFLDAVVGTVKAIKPTENGFAFLVSNKGTIIAHPDAKLSLKPASELSGQLDSKAVKQLQDTSAPWVEAKIGDQDYLLRGEAIPNTDWVLVAAANKSEALASLSSLLRAAVLVLLVVMVLAGALMTTVIAAMLRSLDGVRAALDEISAGGGDLTQRLPENGRDEISRIAASFNLFAEKIQRILLDVRSASNSITTASTEIAIGAQDLSQRTEQTAANLEEAASSMEELTGTVRQTADAALTANQLASSASSAAAKGGDVVNQVVTTMDEINNSSKKINDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAEAAKEIKTLIGASVDRVEVGSRLVAAAGASMSDIVSSVQRVSDIIGEITAASSEQSDGIGQVNSAVVHLDQMTQQNAALVEESAAAAESLKDQARRLTEVVSVFRLGEDERGHHAHSAAPAHKPMSSAASAAHAKPHSFKAASSKAPAPSASKPVARPPAASPAPAVEAPAPAPAPRASKASASTEGDWESF
>NZ_CP013692.1|WP_156422012.1|2930208_2932359_+|HAMP-domain-containing-protein
MTGVLVLAAVLLTVSGALSVLLTRVAHERVVSWAGDKAQSVVEAMHAMDDTSRVLVERNFGSFRQEFGPSFTLDEATGDLRDWGPKLNGNTTQVDKFAGSTGGVATVFAAKGDDFERITTSLKNAKGERVIGTLLGKQHPAYASVSAGKSFSGRAVLFGRPYMTHYEPIKSDAGKLIGLLFVGFELDAFEAAMNNMAANAKFFDSGGIYLVALKPEPADSFFVSHPTAKGKKVQEVFPGFEKTLAEFREQKEGYLADAPKVLESPRDDNFAVIRKSDKTGYWVIAQISRSEAMASHWATMVPFWIMLALTTVGLGMGLFWMMRNWVARPMRELTSAVGAIAQGDLSHAVSSKRDDEIGELIQQTEAMRQRLAATIGVVRQSVDSIGTASKEIATGNLDLSQRTEQTAGSLQVASSSMNELTGTVKQTAESARAANQLVTNAAAAAAKGGGVVGQVVATMEDINTSSRKINDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAEAAKEIKTLIGASVDRVEAGSRLVQEAGTSMQDIVSSVQRVQDVIGEITATSADQSDGLTQISHSVLALDQMTQQNAALVEESAAAAESLRDQAHRLVEAVSVFRLSAEEPSHAAPAPKPSPAPKPHAAPASFKPSGTAKPMGAAGAKPALKSNAAASSGAKPAPARQAPAAAPARPAPKPAASSPPAGQEGDWESF
>NZ_CP013692.1|WP_058720417.1|2929493_2930024_+|chemotaxis-protein-CheW
MESTRDIVPAGRQDAGNLALKAHGPASGEYLTFRLGAEEYGIDILKVQEIRSYEPPTRIANAPDFIKGVVNLRGVIVPIVDLRLKLGCPTAEYNSFTVVIVLNVRSRVVGAVVDSVSDVLELNRDAIRPAPELSSAAVDTSFITGIGTVSDRMLILMDIEGLMSSADMGLMDSLSL
>NZ_CP013692.1|WP_082679998.1|2927589_2929434_+|HAMP-domain-containing-protein
MNMSAMLRQFSIRTRMIGAIAMVLALLLMVGGVGLFGMRSMHNQSQQFKEKTIQSSHQMASLVLSVGNLRRFEKDILIAYQTPEKVPEPLQRWEAALQQFNKTLAEMAAVQVEANASTLKEMKSLVDSYAAKVQPVFKQVGSGQVANVSVADQGIESAKVDIRKAQQLVDELGKQLDLATNKSLAEAQQTEDQVLLTFMAILTLSALVVTPLTLLNMQSICKPLADAEELAKAIAAGDLTTSARLVEGQDEASHLMRSLQHMQQSLQSLVGQLRTSADSIRTASVEIATGNQDLSGRTEQTASNLQQAASSMTQLTGTVKQTADSARTANQLVNSASSAAAKGGDVVGQVVATMDDINTSSKKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAEAAKEIKTLIGASVERVEVGTRLVQEAGESMTDIVTSVQRVSDIIGEITAAASEQSDGIGQVNQSVVHLDQMTQQNAALVEESAAAAESLKDQAERLAEAVDKFKISQSHAHVVNAPRTSGMSGMSSKSSASKPGSAHSFQPQAAKAVKSAAPAMHSAQNSASKARSTPVAATPKASPPRSEPAPRVAQAAQAEGDWESF
>NZ_CP013692.1|WP_058720416.1|2925407_2927540_+|chemotaxis-protein-CheA
MGEMTSEGASLSAGIDLSQFYQVFFEEASENLDNMEQLLLNLNVDTADDEELNAIFRCAHSIKGGAATFGFSDVAELTHQMETLLDKLRRHELAPNSQMVDVLLQSGDALRAQLGRHQGSGADPVDTTDLLTAIRGFVEGESAPAPAPAPTAAAAPAPAPAPAASAKAAKPAARELELQVGPLTDMSLADNLVDLFKEITDLGTIEPLDGGISADGVRRFKVLTSSSDSDLLDLFTFHVAREQVQLLPFGPGFGFHDGAPGAPAVSTAPVDPGYGFFDNAPGVPEGSAAAGSDLKVQANEAKPVAAIAKPAAKVEAKPAAAGMDQSTLRVSIEKVDQLINLVGELVITQAMLAQNSRDLAPGLYQQLASGLADLERNTRDLQESVMSIRMIPMSVVFNRFPRMLRDLAAKLGKKVELVTQGEATELDKSLVEKITDPLTHLVRNSCDHGIELPAERLAKGKPEHGTITLVASHQGGSIVIEVRDDGKGLNRNKLIQKAREKGIDAPDSMTDAEVWGLIFAPGFSTADVVTDVSGRGVGMDVVKRNITSLGGTVEIDSAEGYGMKVSVRLPLTLAIMDGMSVGVGEEVYILPLSSVVESFQVQSTTIKTVAGSGRVVEVRDEYMPVIGLEDIFNVPRFDFEHVSTIMVVVEAEGGRVALLVDELLGQQQVVVKNLEANYRKVTDVSGATIMGDGRVALILDVGSLVRRSRH
>NZ_CP013692.1|WP_058720415.1|2925005_2925368_+|response-regulator
MHSILAVDDSASMRQMVSFTLKNAGFNVVEAVDGQDALEKSSSRDFDLVLTDQNMPRMDGISLTKKLRDNPKFKTTPILILTTESSDQMKQAGRAAGATGWLVKPFDPAKLIEVIGKVIR
>NZ_CP013692.1|WP_156422014.1|2941291_2941435_+|hypothetical-protein
MTWTEVIPLLAVFFVVIGITAWAFKISAKPGLTPEEQDELVKGKQRG
>NZ_CP013692.1|WP_058720422.1|2941715_2944949_-|type-I-restriction-endonuclease-subunit-R
MTEDQLEQETLAWLVEVGYAHHHGANIAPESSSPQRSDYRHVILRGRLAQAIQKLNPGIPAAAQEDALHQVLNLGIPSLLSANRAFHKLLVAGVPVQYQKDGETRGDFVRLLDWAVPANNEWWTVNQFTVKGAHHTRRPDIILFVNGLPLVLIELKNPADIQADIWRAFDQIQTYKEQIPDVFQTNEILVISDGSEARMGSLSADAERFQQWRTITGVDLDPLGQFNELETLVRGALAPAMLLDFLRYFVLFEDDGRLVKKIAGYHQFHAVRAAIEHVVQASRADSAESIRGKGGVVWHTQGSGKSITMTCFAARVMQEPLMQNPTLVVITDRNDLDGQLFGVFSLAQDLLREQPAQATTRQELRALLNNRPSGGIVFATIQKFMPGEDEDFFPELSGRRNIVVIADEAHRTQYGFEAKLKTVKVKGSAPSTGGPGRAVAANELIYAASDVAAPALLAADSEASYRTKYQVGYAQHLRDALPNATFVAFTGTPVSATDRDTRAVFGDYIHVYDMQQAKEDGATVAIYYESRLAKLRLNESELPSIDDEVDELAEDEEESTQSKLKSRWAALERIVGAEPRVASVAADLVTHFEARDDAQSGKAMIVTMSRDICVHLYNEIIRLRPDWHNDDPEQGAIKIVMTGSASDKALLRPHIYSSQVKKRLEKRFKDPADPLKLVIVRDMWLTGFDAPCVHTMYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIGNELKAAMKEYTASQGRGRPTVDAHEAFAVLAEKLDVLRTMLHGYDWSGFLTGGHKTLAGAANHVLGLKVEGNRDGKKRFADHALAMSKAFTLCCTLDEAKAVREEVAFLQAVKVILTKRELSQQKKTDEQREHAIRQIISNAVVSDQVVDIFDAVGLEKPNIGLLDDEFLAQVKSLPERNLAVELLERLLEGEIKAKFASNVVQQKKFSELLGNVISRYQNRSIETAQVMEELIEMAKKFREAAGRGERLGLTEDEVRFYDALANNESAVRELSDEVLKKIAHELTENLRKNLGVDWSQRESVRASLRLMVKRILRKYKYPPDLQEDAVDLVLKQAEALGESWV
>NZ_CP013692.1|WP_058722307.1|2945104_2946181_-|Fic-family-protein
MPFERDQPFNDLPLLPPAAELETRAVLKQAIAANRMLANLRGLAAQIPNQGVLINSIVLQEARLSSEIENIVTTNDELYRADADADGKTDQHTKEVLRYRQALNHGFRELKGRPLSTNLFIEIVQIIKEVEFGIRKVPGTALKNERGEVIYTPPVGEAVIRDKLGNLESFMHAQDELDPLVKMAVMHYQFEAIHPFEDGNGRTGRILNLLYLVDQGLLDIPVLFLSRYIIANKPAYYEGLRRVTEAQDWESWILFMLLAVESTAQQTFEQVTRIRGLMEVVRGQVQTAAPAIYSKDLVEVIFAHPYTKIQFLVDAGIAKRQTASSYLQTLAGLGVLRASKQGREMYYINDALFAELVR
>NZ_CP013692.1|WP_058720423.1|2946356_2951144_-|DUF3320-domain-containing-protein
MNSDIATKLHASRKELLDIGLRNNLVSFKKTAKNLALLQADAREVFEAVYGEEKALSFFAAEAKPKRAGATAAKGQGAVDTGDEELGSSDLELLSELSQARALDVAAAAALDEPTAKARGKAAKVRLLTALDEERLFLQLLKMRSEAQSYVEEQGVNVLYLALGFLHWYESDSSEEARRAPLVMVPVRLVRVSAQEPFKLEYTGDELVVNLSLEAKLKADFDIRLPAFDMEAEQPADELIRYFNAVGESVRLQKRWQVQANELVLGFFSFGKFLMFKDLDPQSWPAEKSPANHAVIGRLLRGGFGSDEPAFADDVNVDSVCAPGEVHFVKDADSSQTQAILEVRAGSNLVIQGPPGTGKSQTITNLIAELISQNKTVLFVAEKMAALEVVKRRLDESHLGDAVLELHSQRATKKSVLDELQRSLDHGRPLNDQGEQDIANLTEVQEELNRYCAVVSSEVGASGLQFLEVLGRYVRCKREWPALAPLDFKPMAAWNEALFLRRKERMRELQVHLKEMGRPDRSPFWGSTKTFFTPVDESAAADALQQSLQHVATLQSRADELSQRLMLSQPVTVQDIDVVCRAARRAAQAPRLQGVQLSTQDWQLRRDALRALIDAGQAMTALRKQFDAALVDVAWEQDLLPVRQVLLSHGSKWWRFLSGTFKQAKGRLQSLARGELPKAATDMLKMVDGVMAYQQHEKVFLQQETLGQALFGAQWQGRQSDWVVLDRLMSWVVSLHDDMGKGEIPAGIVDFLAGHADASGLGDVAQVIESLMADTKAGLTQVSSILGVSQLAGGQDLLTTPLARLGEQLTQWQSGLGTLRHMGRFNALAEQLRKEEMAQFVAQASVCEQPDQLGALLALSWYSGLLQSVYAENPTLQHFDRIQHEHRIARFRELDKASLRHAQTKLAAKVWAAKPNLNQPGEMGVLRAEFNKKKRHLPIRQLIHKAGRAIQQIKPVFMMSPMSIANFLPPGILEFDVVIFDEASQVKAVDAFGAILRGRQVVVVGDTRQMPPTDFFGRDVEVDDEDNTTGDIESILSMFKAAGCAERYLRWHYRSRHESLIAVSNAEFYDSKLVIFPTAGTDPMVTGIGFEHLPEALYDRGRTRTNKGEAKAVAQAVMAHAIERPQLSLGVAAFSAAQRDLIDVEVELLRRRTPQAEAFFSRHPSEPFFVKNLENIQGDERDAIFISIGYGRNETGKIAREFGPLNKEGGHRRLNVLISRAKMIMRVFCNFKAEDMDLDASAKHGVRALKNFLKYAETGQLEASYETGKAADSPFETEVMLALRELGHDIEPQVGTAGYFIDMAVRDPAKPGRYLLAIECDGAAYHSSRSARDRDRLRQGVLEGLGWTFHRIWSTDWFRNRQQEIKRVVAVIEAAKASEGRVVPAVAKDAAVVEHVIDRGEAGSDVEVEFSQPYVRAALSPVAGLELHLAPVGDLGRMVVRVANVEAPIHVSDLTRRLMEAFGVVRAGNRITARVQEALDHCVRGGRLVSRGDFVYMPGDAQFVPRDRSLFSASDKKIEWVAPEEIDAALQESVRLGYSLSMEDAVAEAIRLLGFGRATQKIGATVEERLEALVQAGALERVGMMVTLAASASFA
>NZ_CP013692.1|WP_058720424.1|2951269_2952511_-|restriction-endonuclease-subunit-S
MSSDFRPVRLEELLQFANGRSSPDRDEAAMFPVFGSNGRIGMAAKSNSPSRTVVIGRVGTYCGSVHFSKQACWVTDNAIRATAKDDNDPEFLYYLLKHLNLNNWRSGSGQPLLNQGTLNAISTLVPAPPIQRRISSLIGAIDDRITLLRETNATLEAIAQALFKSWFVEFDPVRSNMASLQHGYFDAAVAALFPDDTETTEHGEIPESWHFAPLREMVHGVYDGPHATPPEAHEGGVFLGIKNLTGTSLDLSDVRHISEADWSQWTKRVTPRHGDIVFSYEATLGFFAMVPPGLRCCLGRRLALVRPLADSGTPHFWFHQFVAAPFQRLLDKHTIQGATVNRIALKSFPDLPVLVPPLELREAFERVAAPIWLRIHENSAQAMTLVRLRDTLLPRLISGQLRLPLAETEVEVA
>NZ_CP013692.1|WP_058720425.1|2952500_2954072_-|SAM-dependent-DNA-methyltransferase
MLDDIKKTLWATADKLRANMDAAEYKHLVLGLIFVKYISDTFAARRAEVVARLADPDDEYFYGDASPEDLAAEADDRDYYTAVNVFWVPEEARWESLRAQAKRPEIGKLIDEALSLIEADNPKLKGILDKRYARAQLPDGKLGELVDLVSTIGFGENPSAARDVLGQVYEYFLGMFASAEGKRGGQFYTPASIVKTLVAVLAPHHGQVYDPCCGSGGMFVQSERFIEAHGGKLGDVSIYGQEANPTTWRLAAMNLAIRGIDFNLGREPGDTFTRNQHPDLRADFILANPPFNISDWWHGSLEGDARWQYGDPPQGNANYAWLQHMLHHLKDSGRAGIVLANGSMSSSQNNEGIIRAAMVDADVVEVMIALPGQLFFNTQIPACLWFLAKRKPAERKGQVLFIDARKLGRMISRVQCEFADEEIERIAAVVAAWRGAGASVGDAVADYADVPGFCRSVPLAEIAQHGHVLTPGRYVGAEEVEDDDEAFADKMSKLTEQLGEQMAKGAELDALIRAKLGGLGYEF
>NZ_CP013692.1|WP_156422015.1|2954776_2955553_-|hypothetical-protein
MDARHEMLEHCFRGLAARFRPENYSPTGIGYKAAHLGGKGVPFHDRLAEPTEELVYGHRSTGVNLKLYLKKRDLDCDLPVEQWRVRLEVTAQQGGVSLVGLSRVSALFGFGYRRGFAKLFFIVDRVSVRKRTRWSALRVSRLNRAGAAGWLRAGVNAFGHGPWPEDVLKQSVAAAAWRANRARNKTLDPQPYVFHPHQAAHALIGQALRQLDRRMAPRNSGGNVQADGCKSLLTKEIPAAHPGAITYAPNKPLPEPAV
>NZ_CP013692.1|WP_082680346.1|2956702_2957851_-|DUF3466-family-protein
MNQPIFTASRAIAVALVLVGPMGVSAATPALIDLGVVLQTTANTWSTFGSLRFGDISVNNSGWVAGFRPDSPGYRAIAMKPDNYDILSMDASQTMGWAINNKGQVGGYQQIGGNYKAKVFDAANGISQTVGAKADKTIAYAINDNGLLAGAKDTASGYQAATFAGEKTTELGALPDFNTVGKAVNSSGSVAGYGQGVNSRFLQYHAFVYTVANGMVDIGDVFGRGTAYATGINDAGLVVGTAQYHLPISDGFRAFIWANGSVKQLGALSYNGNSFAYGVDNAGNVVGMSNTNIGRDWRAFIYKSGQMVDLNTYLPAGSGWVLESAESISDNGRFVVGAGVYNNTRRAFLLDLAPVPEPGTYFLMFAGLATVGLVVRRRQKNQ
>NZ_CP013692.1|WP_156422016.1|2958597_2960040_-|tetratricopeptide-repeat-protein
MVSPIPPSGAGQVRARARSVLTALARGLARFKGPIVAIAGVGAVLSGFVGWYTTYKAIAASPTAQSSPTQSADAINPLSILVLPFTNQTGDASKGYIADALTSSISADLSRIRDAFVVPTATAFTYKEKNLTVAQIGKDAGVRFVLQGGVVASGDKLRISAQLADTQSGQQLWNEVFEGETTNLFELQDLVTARIGNSIGNEMVIVAARESEKRKSSPKVADLKLRQRGLALKPLSEDTFNQRESLLHAIIKQEPDNAAALAQLANLLAVYASNFLDEKSPRYPYIYTEAKSLALKAKTIDPQLPNIYSALAFITSNIDKDNAEMLRYLEIVLKLAPKNPGSYNDLAMWYFYDAQPKVAIELLEKAISLYPTAPHSSITGNMARCFRMLGDNTAAIAWGKRFIDTNPTYGFGYANLAMAHANLGQMDKARQYADEYKRLVKANPNNGYSLEKLDGSESPAYFKYYNEHYLPEWRKAGLPE
>NZ_CP013692.1|WP_156422017.1|2960443_2960812_+|hypothetical-protein
MRETLGEYELDAETLGVGELRRYLNTVWEELRTPAGRESLKRQGLPEDIAGQKFEEFFFVEPSGAALVDPVSVLIGMLITGAGTVGKDLWKKVLLPRIEERYGKKALKARKTTEKKAGDELK

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Crispr_ID: NZ_CP013692_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013692_4

3086922-3087041

Orphan

Consensus_repeat	Method
GGTTCATCTGCCCGCGCCCATAACCAAGCCCGTCTGTCCGGTGGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013692_4

>merge|NZ_CP013692|4|3086922-3087041|CRISPRCasFinder
GGTTCATCTGCCCGCGCCCATAACCAAGCCCGTCTGTCCGGTGGACCCTTGGGTTTGAGTTGGAAGATCAGCCAGGTTCATCTGCCCGCGCCCACAACCAAGCCCGTCTGTCCGGTGGAC

>NZ_CP013692|4|4|3086922-3087041|CRISPRCasFinder
GGTTCATCTGCCCGCGCCCATAACCAAGCCCGTCTGTCCGGTGGAC	CCTTGGGTTTGAGTTGGAAGATCAGCCA
GGTTCATCTGCCCGCGCCCACAACCAAGCCCGTCTGTCCGGTGGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013692.1\|WP_058720509.1\|3087098_3088706_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NZ_CP013692.1\|WP_058720514.1\|3094751_3095570_-\|DUF429-domain-containing-protein	unknown	unknown	unknown
NZ_CP013692.1\|WP_058720501.1\|3071774_3073355_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173863
NZ_CP013692.1\|WP_082680012.1\|3076934_3079025_+\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224423
NZ_CP013692.1\|WP_058720505.1\|3076573_3076813_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013692.1\|WP_058720506.1\|3079176_3080358_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226346
NZ_CP013692.1\|WP_058720502.1\|3073492_3074785_-\|HD-GYP-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NZ_CP013692.1\|WP_058720515.1\|3095645_3097214_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225490
NZ_CP013692.1\|WP_058722319.1\|3091741_3092500_+\|HesA/MoeB/ThiF-family-protein	unknown	unknown	gnl\|CDD\|238386
NZ_CP013692.1\|WP_058720512.1\|3092573_3093476_+\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
NZ_CP013692.1\|WP_082680013.1\|3080249_3082454_+\|BamA/TamA-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|223801
NZ_CP013692.1\|WP_058720503.1\|3074940_3075627_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|225418
NZ_CP013692.1\|WP_156422028.1\|3069676_3071653_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013692.1\|WP_058720513.1\|3093587_3094508_+\|arginase	unknown	unknown	gnl\|CDD\|212515
NZ_CP013692.1\|WP_058720504.1\|3075713_3076568_+\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP013692.1\|WP_082680015.1\|3098315_3100139_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP013692.1\|WP_058720510.1\|3088775_3089885_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP013692.1\|WP_058720516.1\|3097210_3098242_+\|asparaginase	unknown	unknown	gnl\|CDD\|377601
NZ_CP013692.1\|WP_082680014.1\|3082417_3086722_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225463
NZ_CP013692.1\|WP_058720511.1\|3090193_3091648_+\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864

Protein	Function_ID	Function_description	E-value
NZ_CP013692.1\|WP_058720509.1\|3087098_3088706_-\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	2.79846e-84
NZ_CP013692.1\|WP_058720501.1\|3071774_3073355_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173863	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP013692.1\|WP_082680012.1\|3076934_3079025_+\|S9-family-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	8.35408e-91
NZ_CP013692.1\|WP_058720506.1\|3079176_3080358_+\|VWA-domain-containing-protein	gnl\|CDD\|226346	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP013692.1\|WP_058720502.1\|3073492_3074785_-\|HD-GYP-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	5.11068e-92
NZ_CP013692.1\|WP_058720515.1\|3095645_3097214_+\|hypothetical-protein	gnl\|CDD\|225490	COG2939, COG2939, Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism].	1.63819e-89
NZ_CP013692.1\|WP_058722319.1\|3091741_3092500_+\|HesA/MoeB/ThiF-family-protein	gnl\|CDD\|238386	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). .	6.32099e-115
NZ_CP013692.1\|WP_058720512.1\|3092573_3093476_+\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	5.06378e-53
NZ_CP013692.1\|WP_058720511.1\|3090193_3091648_+\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	3.62159e-127
NZ_CP013692.1\|WP_058720503.1\|3074940_3075627_-\|c-type-cytochrome	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	2.53008e-18
NZ_CP013692.1\|WP_082680013.1\|3080249_3082454_+\|BamA/TamA-family-outer-membrane-protein	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	8.57574e-57
NZ_CP013692.1\|WP_058720513.1\|3093587_3094508_+\|arginase	gnl\|CDD\|212515	cd09989, Arginase, Arginase family. This family includes arginase, also known as arginase-like amidino hydrolase family, and related proteins. Arginase is a binuclear Mn-dependent metalloenzyme and catalyzes hydrolysis of L-arginine to L-ornithine and urea (Arg, EC 3.5.3.1), the reaction being the fifth and final step in the urea cycle, providing the path for the disposal of nitrogenous compounds. Arginase controls cellular levels of arginine and ornithine which are involved in protein biosynthesis, and in production of creatine, polyamines, proline and nitric acid. In vertebrates, at least two isozymes have been identified: type I (ARG1) cytoplasmic or hepatic liver-type arginase and type II (ARG2) mitochondrial or non-hepatic arginase. Point mutations in human arginase ARG1 gene lead to hyperargininemia with consequent mental disorders, retarded development and early death. Hyperargininemia is associated with a several-fold increase in the activity of the mitochondrial arginase (ARG2), causing persistent ureagenesis in patients. ARG2 overexpression plays a critical role in the pathophysiology of cholesterol mediated endothelial dysfunction. Thus, arginase is a therapeutic target to treat asthma, erectile dysfunction, atherosclerosis and cancer.	8.08896e-132
NZ_CP013692.1\|WP_058720504.1\|3075713_3076568_+\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	4.49036e-46
NZ_CP013692.1\|WP_058720510.1\|3088775_3089885_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	3.10009e-120
NZ_CP013692.1\|WP_058720516.1\|3097210_3098242_+\|asparaginase	gnl\|CDD\|377601	pfam06089, Asparaginase_II, L-asparaginase II. This family consists of several bacterial L-asparaginase II proteins. L-asparaginase (EC:3.5.1.1) catalyzes the hydrolysis of L-asparagine to L-aspartate and ammonium. Rhizobium etli possesses two asparaginases: asparaginase I, which is thermostable and constitutive, and asparaginase II, which is thermolabile, induced by asparagine and repressed by the carbon source.	9.27027e-130
NZ_CP013692.1\|WP_082680014.1\|3082417_3086722_+\|hypothetical-protein	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	2.0484e-82
NZ_CP013692.1\|WP_082680015.1\|3098315_3100139_-\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	3.2036e-105

>NZ_CP013692.1|WP_082680014.1|3082417_3086722_+|hypothetical-protein
MAFALQRGHRTVSMNETPEPQAQGQAQAPAPAPAPIKAKKPRSRALLPGMLALPVLLCAVGITGWWAVATEPGTQQLLNLVPGLAVEQVQGSLSGEFSAKRLRYTLPGGSDQIELQGLRWQGLQLAWNRSPALWADISLQRLHVERLTLALAPSTEPTQAPTSLLSPLGLHVRELSIGSIHSPELGDKPLRDLRASLDISAAQGQQHQLTLHHLAWDLMQASGQLTLGSQGTLPLDAQLQLQAAATEDGLPAWSAQVMAKGPLQQFQLQGQLSAQAQQLQAHAQVQAFAAWPLQSLQLDAKALDLAALLSGVPRTALTGSATLRAQAAGDANAAQTLAVQAQLSNAAAGTWNQALLPLRSLKLDLSFQPADPAALQIKTLDLALGSASQPAGRLNLVGNSSAAQGVKLAIALEQLRGEGLDTRLQGLQANGRIELSTRQAINQLNQAGADPQLNLNAQLKGQWLARKPLAEPNLPLSLQLQAQLSRQMVTLPSFALKVGLSELTGSGELKLKQAFSLQQGWQLKTQAKGHAPDLRRFVAGLPGSAWQQKAQALDLKLDANLQAGPSTAKAGPLQMAPQGTAALQVQTSNPSGPVLSGLLNYERQAAGTPKAMLELQAGPNQLRGEASLSAAEQLQAKLNINASQLNSAQALLASFLPGARLSGSLLGNVSLQLQPEPGSSNAKSAKSVAPAWAWHTEADLRGSGLQLQNITGPQGDAAGLTELGGAQLQWALSSGLTQPQSAQLSLQKFSSQGFALPQASLQLKGTWAQHSLLLDGSVEGKVPAALIPPDQPKNLIARGPIKLELQAGLDAAPLKLWRDGGRWQFSGGKLLARPQDSALAPWLQAQNLSGQVSFAALGQLKQAELKPGRLDLLGAGLRWQQMSWAGEQQIALDLNIEPLAVAPLLARWQPDFGWGGDLVVAGYARISSQPKLQVDIALERSRGDLSVTDDNGTQMLQLTDLRVGLIGSPGLWHLTQAAASVPGGALAGALTARNTDGQLWPGPNSQLQGVLEAQVTNLNTWGALLPAGWRVGGSFLASASFGGRLGAPEITGLASAEKLSLRNPLLGVDVNEGELRLTLSGGKAQLETFKLRAGGGELSAAGLMQLGAKPHAELQVKANKFALLRRVDRRLSVNGQLQMLTDPKSFDLTGQLDVEEGLFDFSRNNAPELDDDVKVRRPAKAAPQVADKATTKRSVKVKLDIDLGQKLRVRGHGLDTLLAGKLVLTQAASGPALNGQIKAVKGSFDAYGQKLTVEKGLITFTGTPDNPRLDVLALRPNKLNSSANDDVQVGVTVTGTAQSPRIKLYSDPEMPESAKLSWLLLGRAPDQVEGNDAAMLQSAALALLAGDGEGVTTKVMKTVGLDELSFDGKGSDFKGTVVRVGKNLSERWYVGYERGLNATTGVWQLIYRAAQRFTLRAQSGDENALDLIWQWKWE
>NZ_CP013692.1|WP_082680013.1|3080249_3082454_+|BamA/TamA-family-outer-membrane-protein
MAVPPERGPDSATHASAHVPSVSGRAGSRHAFAQQMSLAPWRAAGLGLCVALLSGCASFTKQFGNPISEAKAALGALVPGQQAQGRLVAEYKLVVLAPDATLRDMLSEHLDLARFRNAPEDQRLGSQELARLTKAAPEQAQALLETQGYFNAQVEATRDTSQTPIVVTVSVTPGPRTTVGKLKLSFRGEVAAGLVEPPAADTSAVNPDESSDATTNPASPAASVPSTAASSTASTTVTSTGAAEQSTNQGAAPSTTPPAPLSAAEQAANQAKEAQAERVRQTLQQNWRLKEGQAFVQGDWSSAKSALLTQARAQGYPQAKLESSSADIDAERNNAELSLVMDSGPLYRLGDLRIQGLKNQPREVVERLAGYQVGEPYTERALLDFQERLIKTTLFDNATVSIRPEAGGPTLAPVWVDVREAPRQQLTASLGFSTGDGPRLGLDYTHRKPLGLNMRSRIKLNVSQKNPWLDWELSSHPRTDMQRDLAALFAERVPEGEKVTINVRARLGRLRETLQDDRIYFLEVLRARETDPQQVVSSGAISANIQWTRRRVDSTLKPSDGYTASLLLGLGRADNSVASSGAFGRSELVLHGYKPLPGGWFGNARTNWSQVYAQPQVGLPEALRYRAGGDDSVRGYGLHDLGPVDANGNPTGGKVMWTGSIELAHAFTATLPDLMGAAFVDAGHTAMNWAELRPTLASGLGLRYRSPLGTLRLDYAHAHATGKWRLHFSVGIAL
>NZ_CP013692.1|WP_058720506.1|3079176_3080358_+|VWA-domain-containing-protein
MLIKFFYTLRAAKLPVSVREFLSLLEGLQAGVIGADGPPSTEDFYFLARTTLVKDEAHYDKFDRAFAAYFKGVELLTDFSKDVPLEWLRKHLELELTPEQKAAIEKMGWQELMDTLKKRFEEQKERHEGGNKWIGTGGTSPFGNSGYNPQGIRIGGASRNKSAVKVWEQRAYKDYDDQLELGTRNIKVALRRLRRFAREGSELELDLDNTIHKTAANAGMLDIRMIPERHNKVKVLLLMDVGGTMDEHIHRVEELFSAAKTEFKHLEFFYFHNCVYDFVWKNNRRRFAEKTSTWDIIRKYNRDYKLIFVGDATMSPYEILQPGGSVEYNNEEAGAEWLQRLANAFPKYAWINPEPQGVWQYRQSVALIQQLMHQRMFPLSLVGLEAAMRLLSK
>NZ_CP013692.1|WP_082680012.1|3076934_3079025_+|S9-family-peptidase
MSKKNQPFNVEALWQLERVGAPSLSPDGAQAVVSVSSYDMDKNKGANHLYLLSTLGGEPRRLTSAGEKDGSPQWSPSGEQIAFIARREQEGSKDEEAQLYLIAPDGGEARRLGSVATGVEAFKWFPDGRHIAFISWVWPALKGAKAQAQALTDFKARKTTAYATSEALYRFWDHHIPQGRVPHLHVIDVASGKTQDLFEGSDISLSWTEADEDCFDISPDGRRIVFAFDPAAEKRLDSRFALGEVEVKSRKIRTLLQEPDWHLQAPRYSHAGQHLAFVASHQGQKHNMPSQLAVLDTHGAWAVVSEDWDHEVDAPLSWAEDDLSLLFTSEERGRRHLWHFDLPGQKVQRIVEGGNITAFAQANGTLVLAHDSVQHPTRITVLNADGQTQRIEQFNDKRLADYRFSRHEEVIVQGAQNDPVQMWLVYPPDFDASKQYPVMQVIHGGPHTAFGDSWHWRWNHQAFAAQGYIVACVNYHGSSSFGYAFKDAITHRWGELELQDVEAGTDYLLQQPWVDAHRIFATGGSYGGYMVAWMNGHVPAGRYQAYVCHAGCYDWQAMFADDAYAWHAKELGAWYWNDPAKIASQSPHSFAQHMQTPTLVIHGAKDYRVPDAQGLAYYNTLKARNVDARLLWFPDENHWILQPQNSRLWYGEFFDWLKSHDSVAGAGAKPSKAAKATKAEKPGKSDKAAKARKAKN
>NZ_CP013692.1|WP_058720505.1|3076573_3076813_+|hypothetical-protein
MGAPLKNALHEGVADAIGFVLGALLGWQLGLTLGFDFVSSSAWGVKEITGLLFILAGCGLGRLICRELLARWRLRQNKS
>NZ_CP013692.1|WP_058720504.1|3075713_3076568_+|MoxR-family-ATPase
MKFEGSDQYIATPDLMLAVNAAAKLQRPLLVKGEPGTGKTMLAEEVARSLGMPLLQWHIKSTTKAQQGLYEYDAVSRLRDSQLAGIEGSEKVRNIENYIVKGVLWQAFEADQPVALLIDEIDKADIEFPNDLLREIDRMEFYVYETRQLIKAKHRPLVFITSNNEKELPDAFLRRCFFHYIKFPDAATMQSIVDVHFPGLKKELLAAALKTFFEVRNLPGLKKKPSTSELLDWLKLLVAEDIPTESLLTQDASVTVPPLVGALLKNEQDLTLFEKLVFMQRHNR
>NZ_CP013692.1|WP_058720503.1|3074940_3075627_-|c-type-cytochrome
MKKLLQISIAMFAILGATSAVQAQAQATTSAAAAGSASVQSKVAMCIGCHGIAGYQSSFPEIHKVPMIAGQNAKYIGAALTAYAKGERKHPTMRGIAQTLSEQDIADIAGYYEKQAAQAGATAVAETVPQPSAQVAELLTKGACASCHGANFSKPIDGSYPKLAGQHPDYLYAALKSYQTEGNPVVGRGNAIMAGQVKQFSHTELQAMAKYLASLPSELRTVPQSKFR
>NZ_CP013692.1|WP_058720502.1|3073492_3074785_-|HD-GYP-domain-containing-protein
MLKKIPTQQVQLGMFLQSMEGSWLSHPFWKTKFVIKDQADLEALLTSGVPAVWIDVSKGDDVRPTSNEQVNEEASVTAALIEAAPVAPPAAAPAVPRSAPVAAPPPPPPPAPASQQKVSLGTEMAQATKVINRSKQAVINLFGEARMGRAMDVEQCLPIVEEVADSVSRNPSALISLARLKTKDDYTYMHSVAVCALMVSLAKQLGMDEAQSREAGLAGLLHDVGKMMMPLDVLNKPGQLTDAEFNVIRSHPLRGYQMLKEGGAVPASALDVCLHHHEKMDGTGYPQKLKGEEISVLARMGAVCDVYDAITSTRPYKSAWDPAGSIQRMAQWTGQFDPVIFKAFVKCVGIYPVGSLVKLESGRLAVVVDLNPLSLAAPVVRVFYSTRSKLPVPVQLLDLASPTAGDRVVGRESPLDWGFTHLDDIWRAPL
>NZ_CP013692.1|WP_058720501.1|3071774_3073355_-|ABC-transporter-substrate-binding-protein
MKKITLMALALAACSAPLLLQAQTLRWASQGDPQTMDPHSQNESMTNMVNGQVYERLTRRDRSLNLVPGLATEWTQVSPLVWRFKLRPGVKFHDGQALTADDVVYSIQRAKESSSQLAVYANAVGVPKKVDELTVEFQLAKFNPIFLQHIDLLWIMSKPWSETHRVTKPLDFKNKEESFTSMNANGTGPYQLVTRQPGIKTVYKRNPGWWGKFEGNVQEVVFSPIANDATRLAALVSGEIDFVLDPAPRDVPRLRSTSGVKVVDGPENRLVFIGMDQARDKLLYGKVSGDKNPFKDIRVRRAMYQAIDVETLKTKLMNGLSVTTGSLTPSASASYNDPQIEARAPFDIAAARKLMAEAGYADGFEVTLDCPNNRYINDESICKALAAMWAQLKIKINVNAMPRVTYFPKLEKLDTSLYLYGWGGPITDAESILTPVFRKRGEQGVGAYNYGDVRNDKFDALAAQSSVEVDPAKREQLIKAAITEFKQQFHVLPLHRQVIPWAMRNGVEAVHRPDNWLELSWVKLGK
>NZ_CP013692.1|WP_156422028.1|3069676_3071653_-|hypothetical-protein
MPSLFLPSRPFAPRQLGLGLLLVCAVLVGCGGGKGGDSSSGGGGVTEFASGPTLSGIAAVGAPLMNARVAVVDGSGASLGSTTTRAPDGSYSLTLSSKSLTAPLLVQVSGLDAAGNPQVLHSAVPILAANASAMVAHVSPLSNAVLALALGADPQPVFAAAKSNGPALAAAATAASAAGEFVKTLVKTQLTDLKFSNPTALSLLADPAFAANKGAHDLLIESLRVSLVKNSKGVMQLQLSNKLLPSQAAEVVVDLPMAQTELLKTSSPTPTNAITSTLKATTSPTATLANLAALDDLSAALNKLIAQGASAATIGSHALLAGYDTHNGRLKAALATKLADYVAKNRQFGRWQITGCADDTVTGGLCKRVLVAAPISDVSGTVVDTFSDAVSYSKTSTTGSVWNLIGNGKKLALAVYPLAFQALAADGTNSTAITPNPVAGLQINIQTLLEGSATPLLTQATVQTPGGFSIPFANCGQAQLCISSTAGATSLVPTGGLADTALLRSSVGWIGADDIVLNAKYLVTYSLSGTAESRAVYLPAEVPAELPAARFPTLDGVSSSATLRGGQLLVGMTINWSAWAAANPDMRLISVRTVLNVPADPTQAPLINDTTPPLPPSTTLTLAGISVPDTFVASNYELWLGAQDAAGRRYYTRYTLTP
>NZ_CP013692.1|WP_058720509.1|3087098_3088706_-|iron-ABC-transporter-permease
MLRLITLICLTLALPVLGVLGSWLALDAAAWALLQHQLSTVLAGYAWASLLLCLGVGAGVLLLGGATAVAVSLFDFPGRRVFEWALLLPMAMPAYVAAYAYTDALQYSGMLQTLLRDWTGLQGALWPDVRSLPGAIVLFVLCLYPYVYLLTRTALAERAVGLMETARLLGAGSWRRVREVALPLARPALAAGLALALMETLADYGVGAYFGLTTFTTGIYKAWLVMNDRMAAAQLASVLLLVVGALLWLERRSQARLRFGASRSGAQHAAEARAMRLRGAAAAGAVLLCALPILLGFVFPLLALLKLMWLEARYGEFGLPLLRFVDWSLTSLKLAGIASLLAVSLALALAFATRIGGGGPLLKGATRVVALGYAVPGAVIAVGILLPLGWLQTHAPELGLTSIVTGTITGLIYAYLVRFSGVALQSIESGYSRISPNVDETARLLGASRARLLIELHAPLLARSALAAALLVFVDVMKELPATLVLRPFNSDTLAVVAYQLARDERLGEAALPSLAIVLVGLVPVVMLSRALRKR
>NZ_CP013692.1|WP_058720510.1|3088775_3089885_+|ABC-transporter-ATP-binding-protein
MFLALDRVGLRYPGHSAATAATTARAGTGAQAVQQLSLSLTTGQIGVLIGPSGCGKTSLLRCIAGLERLETGRISIAGETLADASQGLHIAPEARRIGMVFQDYALFPHLSVADNVGFGLRHLARTQRAERIQEVLDLVGLAHAAKRAPHQLSGGQQQRVALARALAPAPRLLLLDEPFSSLDVDLREHLSQELRGILNRSGTTALFVTHDQAEAFAIGDVVGVMHQGQLEQWDAAYTVYHRPATRFVADFIGHGVFTPGHIVVGPNGPEVQTPVGALIDAEACALASAYPGGRCDVLLRADDIIHDDLAPVQAQIERKIFRGADFLYTLRLASGERLMAHVPSHHDHHVGEWIGIRVNVDHVVTFPAA
>NZ_CP013692.1|WP_058720511.1|3090193_3091648_+|S41-family-peptidase
MGAKLKVAGWVAVGAVAGALTTMQFQANARSSLSPLPLEELQQLAAVFGMVKSDYVEPVDEKKLINDAIAGMVSGLDPHSQFFDKKNFKEFREGSTGKFVGVGIEIGMEDGLVKIVSPIEGSPAFRAGLKSGDLISKIDDTAVRGLTLDAAVKRMRGELNTKVQLTIYRKNENRTFPVTITREEIHAQSVRSKIMEPGYAWLRVSQFQESTVDDFVKKLEEIYKAEPNLKGLVLDLRNDPGGLLDASVAISAAFLPRDVEVVSTNGQIPESKSSLKANPESYARRGGADPLRKLPAALKKVPLVVLVNEGSASASEIVAGALQDHKRAVIMGAQTFGKGSVQTVRQLGPETALKITTARYYTPSGRSIQAKGIVPDIMLDETAEGNVFAALRMREADLEKHLNAGKDDPAKTEAADKAREAAREEARQKLEAEYAKKMEPPKPLPEFGSAQDFPLTQALNKLKGETVIVSKTAIERKAEAKPAE
>NZ_CP013692.1|WP_058722319.1|3091741_3092500_+|HesA/MoeB/ThiF-family-protein
MNDEQLLRYSRHILLDDIGIEGQSRLLAAKALIIGAGGLGSPVALYLASAGVGELTLVDDDTVDLTNLQRQIAHTSARVGLPKVESMQQSLAAINADVRVRTIQQRADAALLDELVAQADIVLDCCDNFATRQAINSACVKYGKPLASGAAIGFDGQVSLFNSRQADSPCYACLFPPESAVDEVRCATMGVFAPLVGIIGSMQAAEALKQLIGLPTPLSRRLQMLDARRMEWTEIEVRPDPSCPVCAQSRQN
>NZ_CP013692.1|WP_058720512.1|3092573_3093476_+|TIGR00730-family-Rossman-fold-protein
MNKRKDLTLRNFPSAKEEVRATRPLPNYDGPESAYRLAFDDSEFLLRDDLRPVRMQLELLKPELVQHEQGIKSTIVIFGSARIKSREDAQRALEQAQNSQAAQADNATLKRAEQQLRMSDYYEEARRFANIVTRASVERADPIYIVTGGGPGIMEAGNRGAYEAGGKSIGLNIVLPHEQIPNPYITPELCFRFHYFALRKMHFLMRSVALVCFPGGFGTLDELFETMTLIQTGKCRRRPILLFGRDFWTRLINFELLIETGMITAGDEKLFHFVETAEEAWALLESTYDLDPMPVGGDGV
>NZ_CP013692.1|WP_058720513.1|3093587_3094508_+|arginase
MTTLRSVSLIGAPTDIGAGARGASMGPEALRVADLAAALQSHGVEVADRGNLLGPANPWLPPVDGYRHLNEVTAWNQSVHDAVYAELKLGRMPILLGGDHCLGLGSISAVAKHCREVGKKLRILWLDAHADFNTSQLTPSGNIHGMPVACLCGFGPQQLIEIGGQVPAISPKWVRQIGIRSVDAGEKRFVHEQELEVFDMRYIDEMGMRHAMELALATLDANTHLHVSFDVDFLDPDIAPGVGTTVPGGPSYREAQLCMEMIADTGFMASLDVMELNPALDLQNKTAKVAVDLIESLFGKSTLMRK
>NZ_CP013692.1|WP_058720514.1|3094751_3095570_-|DUF429-domain-containing-protein
MSPTPIIGVDFSSAPSRRKPIVMAQGHLAPQGQVLRLDGLRSFDSLGEFGEFLAQPGAWVGGFDLPFGLPRELVDHLGWPQDWLGLMRHYTQLPREDIRRLFAAFCAARPVGGKFAHRACDGPAGSSPSMKWVNPPVAFMLHAGVPLLLQAGVSLPGLHVGDAKRQALEAYPGLLAREILGRRSYKSDDKLKQTPERLIARKDLIEALEQGRSRLGLRLKLSHAQRDALIDDASGDRLDAVLCLLQAAWASRQANFGLPAGMDPLEGWIVSA
>NZ_CP013692.1|WP_058720515.1|3095645_3097214_+|hypothetical-protein
MADKDTPAETDKHRREPPSPELPVERLVTTEHKLSIGKTTLNYQATCGTVVLREPDSSEPEGKGQSKGEKARASIFFIAYTLKTPKTANPTSAAKKPAQPRPITFSFNGGPGSSSVWLHLGLLGPKRVPTDAMGQCGTPPYALTDNEFTLLTDSDLVFIDPVGTGHSRVAEGEKMAEFHDYQRDLDAVGEFIRLYLTRHGRWSSPKYLIGESYGTTRAAGLSRHLQDKHNIHVNGLMLVSMAVDFQTLSFDHGNELPYPLYLPTYAATAWYHHALSTAMQKKPLKAVVAEAETFANTDYLLALMQGSRLNPERREQIAERLAQLTGLSKAYVLRCDLRPNEFRFFKELLRDRGQTVGRLDSRFLGLDRDDAGEQPEDDAGMNNLVGAYAVGINRLLHETLGYKNDAPYTVIAPLWKSWTWKGFENKYVNVGDSLRRAMHACPDMRVYVASGYFDLATPHAAGDYTLSHLGLRAPLTDNVQVSYFEAGHMMYIHPPSLARMATELRQFVRSDLNASTSASSKQ
>NZ_CP013692.1|WP_058720516.1|3097210_3098242_+|asparaginase
MSHPILVEVLRGAHVESAHSGSLAIVDADGRLVRALGDIERPIFPRSAVKALQALPLVESGAADRFALTDAELAIACASHSGEPAHVATSLGMLNKLGLDERALECGSHWPSREPVLRGMLARGETASALHNNCSGKHAGFVCVACQMALAQGHEPAEFVRGYIAPEHALMREVSAALAAATDCDLSQAPRGTDGCSIPTYGIPLRNLALGFARLGTGQGLSAGRAAAAKRLRQAVAAAPFFVAGSERLDTVLMQALGERLFCKVGAEGVYCASFPELGLGLALKIDDGQVRAAECAMAAIAQALLPTPGEEASALLAHYADMALHNWQGVHVGAVRASAALR
>NZ_CP013692.1|WP_082680015.1|3098315_3100139_-|HAMP-domain-containing-protein
MWRATCACSPAGPLGRRRKMKSAHALWRSWRHWFKRALASGAGAEPSTGPAHLRCCNLADSSGASFVVVRTADRIYWRHPRGLLPQEPTMLNLQDFTVRARLYALAAISMGLLLLVGGMGLYSLSQSTAAFQHFVDNDNQSLVYVSVLRGEAGNLRRYEKDMLINLADAAAVEKYRGDWIKAHERFLKAEQQFAKLDIPPVERELNKSIEEGLAKYKSEMEVFMGKLRDKAFQDPSEANKALGDAKKAVRPLEEKLAELVAAIDKDAEEGVAQITAHERRIRMSLQLILVGSLILICFYTFFNIRSILQPLSELQESAVRIAGQDLSEEIVPRGKSETGDLMRGVKAMQDSLRNVVGNVRGATDSIATAAAEVAAGGHDLSHRTEQAASNLEQTAAAMEQLTASVKHNADSARQANQLAAEAAGVAERGGAVVGEVVSTMSRISTSSNKISDIISTIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAEAAKEIKGLITASSESVEAGAALVERAGGTMQEVIASIGRVSSIVAEISHSTAEQSTGIGQIGQAISQLDNMTQQNAALVEQSAAAAQSLQSQADELAKSVAVFKLA

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Crispr_ID: NZ_CP013692_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013692_5

3931944-3932032

Orphan

Consensus_repeat	Method
TTTGAGTGACAGACCGATCGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013692_5

>merge|NZ_CP013692|5|3931944-3932032|CRISPRCasFinder
TTTGAGTGACAGACCGATCGAACTTGCGAAGCAAGTGAGGAGCTCTGTCACCAACTGATTAGATGTCTTGAGTGACAGACCGATCGAAC

>NZ_CP013692|5|5|3931944-3932032|CRISPRCasFinder
TTTGAGTGACAGACCGATCGAAC	TTGCGAAGCAAGTGAGGAGCTCTGTCACCAACTGATTAGATGT
CTTGAGTGACAGACCGATCGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013692.1\|WP_058722404.1\|3925196_3925511_+\|EthD-family-reductase	unknown	unknown	gnl\|CDD\|131173
NZ_CP013692.1\|WP_058721103.1\|3934312_3935020_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP013692.1\|WP_082680117.1\|3932919_3934302_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236724
NZ_CP013692.1\|WP_082680118.1\|3935071_3936082_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP013692.1\|WP_058721105.1\|3936087_3936939_+\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234651
NZ_CP013692.1\|WP_058721096.1\|3923665_3924949_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP013692.1\|WP_082680119.1\|3940903_3941374_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|379944
NZ_CP013692.1\|WP_058721100.1\|3930560_3931940_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NZ_CP013692.1\|WP_058722403.1\|3921702_3922371_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP013692.1\|WP_058721094.1\|3921086_3921650_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP013692.1\|WP_058721093.1\|3920246_3920876_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|182405
NZ_CP013692.1\|WP_058721108.1\|3942094_3943639_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP013692.1\|WP_058721095.1\|3922417_3923656_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
NZ_CP013692.1\|WP_058722406.1\|3941532_3941982_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|379944
NZ_CP013692.1\|WP_058721098.1\|3926430_3929196_-\|PEP-CTERM-system-TPR-repeat-protein-PrsT	unknown	unknown	gnl\|CDD\|274350
NZ_CP013692.1\|WP_156422074.1\|3943692_3944139_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013692.1\|WP_058721097.1\|3925672_3925903_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013692.1\|WP_156422073.1\|3937195_3940483_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|274362
NZ_CP013692.1\|WP_058721101.1\|3932216_3932885_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367663
NZ_CP013692.1\|WP_156422072.1\|3929304_3930180_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013692.1\|WP_058722404.1\|3925196_3925511_+\|EthD-family-reductase	gnl\|CDD\|131173	TIGR02118, TIGR02118, conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate. [Hypothetical proteins, Conserved].	1.23547e-30
NZ_CP013692.1\|WP_082680117.1\|3932919_3934302_-\|hypothetical-protein	gnl\|CDD\|236724	PRK10604, PRK10604, sensor protein RstB; Provisional.	2.06605e-59
NZ_CP013692.1\|WP_082680118.1\|3935071_3936082_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.35133e-27
NZ_CP013692.1\|WP_058721105.1\|3936087_3936939_+\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234651	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed.	1.09432e-135
NZ_CP013692.1\|WP_058721096.1\|3923665_3924949_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	2.04344e-54
NZ_CP013692.1\|WP_082680119.1\|3940903_3941374_+\|histidine-kinase	gnl\|CDD\|379944	pfam17200, sCache_2, Single Cache domain 2. This entry represents the single Cache domain 2 (sCache_2), which contains the long N-terminal helix domain.	8.82603e-16
NZ_CP013692.1\|WP_058721101.1\|3932216_3932885_-\|hypothetical-protein	gnl\|CDD\|367663	pfam03795, YCII, YCII-related domain. The majority of proteins in this family consist of a single copy of this domain, though it is also found as a repeat. A strongly conserved histidine and a aspartate suggest that the domain has an enzymatic function. This family also now includes the family formerly known as the DGPF domain (COG3795). Although its function is unknown it is found fused to a sigma-70 factor family domain in CC_1329. Suggesting that this domain plays a role in transcription initiation (Bateman A per. obs.). This domain is named after the most conserved motif in the alignment.	0.00634583
NZ_CP013692.1\|WP_058721100.1\|3930560_3931940_+\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_CP013692.1\|WP_058722403.1\|3921702_3922371_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	3.20936e-104
NZ_CP013692.1\|WP_058721094.1\|3921086_3921650_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.42217e-28
NZ_CP013692.1\|WP_058721093.1\|3920246_3920876_-\|glutathione-S-transferase	gnl\|CDD\|182405	PRK10357, PRK10357, putative glutathione S-transferase; Provisional.	3.6971e-51
NZ_CP013692.1\|WP_058721108.1\|3942094_3943639_+\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.98647e-104
NZ_CP013692.1\|WP_058721095.1\|3922417_3923656_-\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	4.41127e-70
NZ_CP013692.1\|WP_058722406.1\|3941532_3941982_+\|histidine-kinase	gnl\|CDD\|379944	pfam17200, sCache_2, Single Cache domain 2. This entry represents the single Cache domain 2 (sCache_2), which contains the long N-terminal helix domain.	2.01013e-20
NZ_CP013692.1\|WP_058721098.1\|3926430_3929196_-\|PEP-CTERM-system-TPR-repeat-protein-PrsT	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	2.22206e-141
NZ_CP013692.1\|WP_156422073.1\|3937195_3940483_+\|PAS-domain-S-box-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	9.63595e-92
NZ_CP013692.1\|WP_058721103.1\|3934312_3935020_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.12715e-78

>NZ_CP013692.1|WP_058721100.1|3930560_3931940_+|adenylosuccinate-lyase
MNNAAASFSISALSPLDGRYASRVAALRPLLSEYGLMHRRVQVEVEWFIALSDAGFAEFKPLSEAARGLLRGLVTRFSEADALAIKDIEKTTNHDVKAVEYWLKARFDASPELKAAGEFVHFACTSEDINNTSHGLMLKAARAEVLLPTLDRITTKLAEMAHTLAAVPMLSRTHGQTASPTTVGKEIANVVARLRNARARIHDVKLLAKMNGAVGNYNAHLSAWPEYDWEAFSQRVIEQQLGLTFNPYTIQIEPHDYMAELFDAVTRVNTILIDWSRDVWGYVSLGYFKQRTKAGEIGSSTMPHKVNPIDFENAEGNFGLANALLTHLSQKLPISRWQRDLTDSTVLRNMGVALGYAVLGYESLLKGLDKLEVNEAGLAEDLDSAWEVLAEPIQTVMRRYALPNPYERLKELTRGKSITAESIREFITGLELPEAEKTRLLAMTPGSYTGKAAELAKKI
>NZ_CP013692.1|WP_156422072.1|3929304_3930180_-|PEP-CTERM-sorting-domain-containing-protein
MPGTDCAIWSAPSIFDGDCFMEVCMNNMLTKVLAGLGVAAGLMGSAHAAIVTQWQATTAGTWLPGSYAAGVTASLADTKLSWGTDIGNGQSSLTIGNPAANQVVNTYIGGGLPPPVFTVPGSTVTHRNFPITNSPMTGATIRDTLSLTALNPAGPGPGALPPINFDIAFVETPNSGTCAATSPPGNPCNDIFVLKGGFLNQSFSYDSQTYFVNIFPTSGGVLSVLQDTACAAAGQANGCIGFTTPEGQETTLAFGYTVSTEELRVPEPSSFALIGLALLCAGGVGRRLRQS
>NZ_CP013692.1|WP_058721098.1|3926430_3929196_-|PEP-CTERM-system-TPR-repeat-protein-PrsT
MPFIRVVFLLIWLAALQACGQRADADLLADARRQIAAKEYSVAQVTLKGGLQVKENWPEARHLLGVAYLEAGNGQDAVIELRKALSADQPLESVLPQLARAMVLAGQSKDLIAGYAGTQLQSPAAVAEFTTALYQAYRAQNDTDKAEQALQAALRAKPDYAPARLLRARAEAARGQPDGALAIVDAVIAADKHNAQAWVLKGELLQIGKRDDSAAVQAYESALKEDPRALMAHQQLTMMALTANQGELAQTRLTAMSKAWPGHPQTLLFEAQMALRANDIKTAREKLQLALKASPNDVLGLALAAELESRAGAVAQAESHLAKALAIAPNSIVQTLQLAQLQVLAGDSAKALATVTPLLGMPAPPPLALAIGARAHVQLGNFKQAEKLFEQASKAAPGDERFRIGQALAKLSRGEDAQSMLELERMSAQGGSNLPDLALANLKQHNNDSQGALAMLDRAQSKQPKDPVPLLQRGHLLLQKGDLVAARAAFEQAAKIDPQSWPAVEALAQADAASGNVQAAVQGIQAWLLKHPKDAGAHLTLAGWQERADAPPQTVQASIRAAISAAPAWNAPQLALIRWFLSQGDAQAALTAAQVAVNALPTDRSVLAQLGHAQLAAGQTSQAVRTFKRVSDVQAKDPAAWVDLAAAHQAAKEPAEARKKLKQALALDGSFLAAHRGLVALALEAQDWAAAQTQSQQVQVLLPKQPEGWTWEGDTLALQKKWGAAAVAYRSAQSKAARSDTALRLHAVLLSDGRRADADQYERDWLAAHAGDLEFREGLARGAMARGDLPEAERLYRDELAQVPERVSALNNLAWLLVQQRKSGALSLAEQANKLAPNQAPLLDTWAAALVYEGQFAKALEIQQKAVQLAPSASLLQLHLAQIALQAGDKALAKTALNRLTEMAPGQATPPEVEQLRAALR
>NZ_CP013692.1|WP_058721097.1|3925672_3925903_-|hypothetical-protein
MRATLRTKILQVCATKIAKRGPDVGLSFYAFFANRNDDPALLMEAATWWIQDMQLDHFEKAEKIRTLLAAQAPPQS
>NZ_CP013692.1|WP_058722404.1|3925196_3925511_+|EthD-family-reductase
MIKVSVMYPYAAEARFDHHYYLNSHMPMVKRLLGEACLSYTVDKGLAGGAPGSPPNYITLCHMLCPSVESFQAAFAPHAKAIMADIPNYTDLSPVLQISEVLVG
>NZ_CP013692.1|WP_058721096.1|3923665_3924949_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MAGEDIKKSGAASTRLAWLAAHRKSALLAAVLLALLAFFLLRQVQGPPVKTLTLQPRDFVQTVVASARVQTQHRVDLGSQVTGTVLSVLVNEGDQVKAGQVLAELDAREARAVAKAATLAISQAELKLRQLKEVQAPVALQADKQAAANLAQAKAQFMRQQDLFKQGFIGQAALDEAQRALDVARAQASSARTQLAAHAPDGSELQLALTALAEAHANAEAAQARLNYTQIKAPVAGQVIDRNVEPGQVVQAGKALFVLSPQGVTELIAQIDEKNMGLLRQGQSALASADAYAQQRFKAQVSLISPGVDAQRGSVELRLRVAEPPDYLRQDMTVSVEIEVARRPKVLILPLDALHESPGAAPWVWVLDEEGAQLRRAELQLGLRASGWVEVLHGLQAGQQVLSEASPGLHAGQRVRAVAAGASAPGG
>NZ_CP013692.1|WP_058721095.1|3922417_3923656_-|ABC-transporter-permease
MARWQPFEWIVASRFLREGRLQTLFIIAGVAIGVAVIVFMSALLEGLQGNFVRRVLTASPHIQLLPPKETVRALHATDTAPDSAQHAAQLQAPLQRLKSIDQWQSVLAQLRAMPDVRDASPVVSGSTLILRGSTSRSLSVQGVESESYERIVNLSEKIVLGHSRLGATDVLIGTELAADLGVSVGDKLNITAATGASNTFQIAGILDLGNKGANQRAGYLALHSAQSLLGYPGGVTSIEVTVRDVYAAERIAQRITARTGVQADSWIKTNAQFFSAVQSQQTANTAIRFFVGLSVAFGIASVLVVSVVQRSKEIGILRAMGISRGQIMRVFLIQGGVLGLGGAALGSLIGAVALQLWLHYVRNADGTPMFIVSLTPSLILSALGLASLTGLLAALAPALRAARLDPVVAIRG
>NZ_CP013692.1|WP_058722403.1|3921702_3922371_-|ABC-transporter-ATP-binding-protein
MLQLRQVRKSFNVGEPTEVEILHGIDLSLSAGEFCAVMGPSGSGKSTLLNIVGLLDRPTQGLLSIAGEETTRLDDQALTRLRGRSIGFVFQYHHLIGAFTALENVMLPMLGLAGFPNAAMQARAEALIESVGLSRWKDSPAARLSGGQQQRVAVARALAMQPALLLADEPTGNLDTKSADAVFELLREVNRVRGTAVLFVTHNPALALRCDKTIQVVDGQVV
>NZ_CP013692.1|WP_058721094.1|3921086_3921650_+|GNAT-family-N-acetyltransferase
MQAADKTSNQPKQVSLRHVREEDLPLLCRMASDLNWRGEFESTLMRSPQFMRKRFAEDGFSSEAAERLMVCDASSGAVIGSVSHFLAHRYSSAREIGWKIDDPALRGQGWGTAAARALVDYVFENFDINRLSCGMDPANLASRRIAEKVGFSYEGRLRGVLFLRGRHADGEMFGLLREEWLAARAKR
>NZ_CP013692.1|WP_058721093.1|3920246_3920876_-|glutathione-S-transferase
MKLIGSLASPYVRKVRVVMAEKKLDYQFVLEDVWASDAILKMNPLGKVPCLVMEGQDSITGAVFDSRVIVEYVDTLSPVGKLIPERGRERTEVRTWEALADGVMDAGVSLRLEQTWSGREEAQRSQAWMDRQMSKVQAGLTAMNQGLGEKAWCSGSHFSLADIAVGCALGWLDFRFPGIDWRSDCPNLARHFEKLSARQSFIDTAPRLA
>NZ_CP013692.1|WP_058721101.1|3932216_3932885_-|hypothetical-protein
MMRRRDALLGLSSLPMAAWAQPAPQIPELLWFIFLERGRPTPDDKAAVAAMQRGHIDNFKRLFGLGLLLAAGPLRDPSGLKRGIVLVRAASREQLQSYFEPDEYVREGYMTVNATPCGARRGLNTEGIDPNGIEESRIVLLGRRSQAAASSTTLADKLEALLKAELIGAWYRLSEGPIAEILFARSGNSDAVQAALAEDPGVADGSVSLAMWPQWLGKGVLR
>NZ_CP013692.1|WP_082680117.1|3932919_3934302_-|hypothetical-protein
MPMKMRSPMTRVALGLGLAALALVWLIQGLMSLAVNGVTDNYVRRFMRGTVDILVAELGPLSAEQRQTRVQVLDDQFSYPVTIVSGSELNAANRAALARGELVVLGFNRRIYAALPNTASSKSPDDFQVLRLGPLNVEARANETIVSLPREVWMQLLAGLGLALAVFALAAWLLRPIWRDIRRLQMAADAMTEGRFELAIAEPESRLFAPIAAGARATLERLAAALATQRELTGAVSHELRTPLARLRFAIDALVEEEDMGKRELAVQACERDLDELDTLIDASLTIARLDMGALQLSCEPGDLQALLSHEAASLVPLLEGKQLSTNLRLDRPVRFDARLLPYALRNALRNAARHGRARIALSAWVEDGQVFLVVEDDGEGVPENMREAVFVPFKRLDREKERGSRGFGLGLAIVRRVAEVHGGKARMGASPLLGGARLQMSWPLVPPPEPEVLLDPDSA
>NZ_CP013692.1|WP_058721103.1|3934312_3935020_-|response-regulator-transcription-factor
MNTEETAAARILLVEDDERLAQLVAEALRKSGYAVTHCVNGLDGEAMMRAEAFDVVLLDGHLPGKDGFDVLRDTRAQFAGRIVMLTARDDDIDQVLGLEGGADDYITKPVAPRVLLARIKALLRRDAPSASAADTDELRFGALVIKPSARDVRVAGAPVELTTAEYDLLLFLAERAGSTVTREDIMQGLRGIEFDGLDRAIDARVSRLRKKIGDDAQAAERIKTVRGQGYLFAKD
>NZ_CP013692.1|WP_082680118.1|3935071_3936082_-|GNAT-family-N-acetyltransferase
MMGTVEVPYCPGFCRGDAFSMLVLTSERLRLRWFESSDAPYVLEQLLEPSWIKNIRDPGVHDLAAAQSWMEEKLFAGYWASGLGLWAVERASDGQVLGMCGLLQRDYLPAPDIGYAFLPRFWGQGYAREAAAACLAYAQEVLAQQRLFASTALDNAPSQKVLQSIGFRHQEDVALDGNAGLSRLFIWEDGSEACRPDIHSEGNGDAQIQALLQRFSSAFNNGQGRVPQVSALPFWMLGRAAISLGDADASGCLSLREFMRQRAELLGPGGRWTEVEQRVNSLRLERHGQIAHAWLSVQMSGRDAGQAFERESLQSIQLLRQGKAWKIAALACTGGR
>NZ_CP013692.1|WP_058721105.1|3936087_3936939_+|orotidine-5'-phosphate-decarboxylase
MNFIQQLHQAETLNDSLLCVGLDPEPAKFPGAWKGDAGRIYDFCAAIVDATKDLALAFKPQIAYFAAHRAEDQLERLMAHIKRVAPSVPVILDAKRGDIGSTAEQYAKEAFERYQADAVTLSPFMGFDSIEPYLRYPDKGAILLCRTSNPGGSDWQNQRLADVPGTPKLYEHLARLAQTDWNKNGQLGLVVGATFPAEIARVRELAPTLPLLIPGVGAQGGDASATVKAGWRAGVGGQQGQGGPVIVSSSRAVLYASSGNDFAAAARRVALDTRELLNQARRA
>NZ_CP013692.1|WP_156422073.1|3937195_3940483_+|PAS-domain-S-box-protein
MSRADSQDDLSSLVGQDLTPADQQARLEHGVRWRSIRLFLSVGSLILSLSTVMLLLSRSPNEHLGGWLPPALAGTLALGCALCYWRMPRRYGRQAMVLLMAGILLVTVSISVSRDLGTHSITLAITGLLIAMATGMLGLRAGLGLALLAGLSLAGLSWAEALGWVTSQSANHTLGVRAAAQLINLLTGLLIGVGLLRIVERGSREAMERSARFRGLLSMAADWYWEMDREFRFTHLAEEKPGRSGLDLQARLGKTPWELGELAAQEDDIDAHRADLESHRPFHGVVARRLGLDGEPRYVSISGEPRFDAQGNFRGYWGVGRDVTDEVNAEQAIQATETRYRELFRRSPSPLVLHRWGRVIDANPAAMAMFGYTQRSSMVGQDLYSHYEPGDDERARQRAAKMEGMAVGAMLPMAEFRLRTLSRRRRLVSATSVRVEAVNGPATLSFFIDQTEQSRAQEALRRSEALLSHLVATSPDVITLTELATGRYAMVNKTFERLSGHAIEEVLGRTAEEINVWFDMQERERVLEAIRAHGRVSEHPVTFRNKAGEPISMVMSAAPFEMDGEHYLVINARDVTDTERSRLVHQAILENASIGIALTRDQHFVQANRWVENMFGWPQGGMVGQHSREVWPSDADHAAIGQEIGPRLAQGEQVEVERPMRRRDGSTFLCRLLVKAVDPTHPSRGGTIWIMEDVTERRRVEAALAQAKDDAQAANRAKSAFLANTSHELRTPLNGLLGLARMLQKPDLAEPTRREYLDQMLDSAESLSGLISDILDLSKIEAGRLTLEAAPFGLREMLATMRMAYLTLAHARGLSFDIHIEPAVPAWVMGDQTRIRQILSNYLGNALKFTASGSISVQVRAKANERIRIEVTDTGPGIAPELFEHLFQPFTQADESTTRRFGGTGLGLSICRELATLMGGEVGLQSQPGQGSTFWAELPLPAAATPISSRPREATDNRDLQGLRVLMVEDHPVNMMIAVAQLQQWGLEVSQANDGSQAVEAVHAAASMGKPFDAILMDVQMPVMSGHEATRELRKRFNAEELPIVALTAAALVSERDEALAAGMNEFLTKPIDAPKLRATLVRLIGHRDNDQTRR
>NZ_CP013692.1|WP_082680119.1|3940903_3941374_+|histidine-kinase
MTFFSAFKKTLQLMLAGLVMAGAAQAADQGTAAEAEAMVKKAVAYIKTNGAEKAYEEFTNGKSFKDRDLYIIVYDLNGKNLAQGANPKLVGKDLIGLKDPDGKPLIQMFIDLAKTKGKGWVEGYKFLNPVSQKIEGKAMYLERVGDTLVGCGIYKN
>NZ_CP013692.1|WP_058722406.1|3941532_3941982_+|histidine-kinase
MSAGLTALLMSGAALAAPAAERGSAAEAEAMVKKAVALIKANGADKAYEEFTNGTSFKDRDLYVFVYDMTGKNLAHGANAKLVGKDLSGLKDPDGKLVLPLLFEVAKGKGKGWTEEFKFRNPVSQKLEPKVVYVERLGDTLIGCGIYKN
>NZ_CP013692.1|WP_058721108.1|3942094_3943639_+|HAMP-domain-containing-protein
MNLRDMKIGPRLGLGFGAILLAAIAMLVGALLSNGSSRAALLDTLQRSAAQQDMAVQMHNALLSSAVAVRNMGLQTEVSGVQKDEAEAKKQRATYLAAKAKLETTDLGAEEKAIFARLADIDSQMDAQFKDAVDLAAQFNTEQAAKVITSKIDPLLNKAVAELMAFIAIQKQHGDQATEQANARNSTTVGVISMAGALVLAMAALMAWRLTVSITQPLQTALAATARVANGDLVSPIEISGKDEAAQLLSGLLEMRDGLARMVSEVRSGAENISTGANEIAAGNADLSQRTESQASNLEETAASVEQLSATVKNNAETARQANGMASSASTAAVKGGEVVGQVVATMQEISASSKKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAGRSAEAAREIKTLIGASVERVEVGSRLVGAAGESMGDIVSQVKHVATLISEISSSAHEQTSGISQINQAITQLDHVTQQNAALVEEAAAAAESLNGQAARMVEVVSVFKLH
>NZ_CP013692.1|WP_156422074.1|3943692_3944139_-|hypothetical-protein
MLTDLIAASPDDASAILVTQGHANVWSTLELPAITPAQWASLRFVLMRQPAEVRALADYLKGFERLGASPDSVEGDPWLVALPEDLGLLMAQMSLEEIAEHASNWQALETSRGQPVLALDLEALLAELAAFAASALAQGQRLLLWICP

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Crispr_ID: NZ_CP013692_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013692_6

3971079-3971185

Orphan

Consensus_repeat	Method
CAGCTCTTCATTGACCGACTGCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP013692_6

>merge|NZ_CP013692|6|3971079-3971185|CRISPRCasFinder
CAGCTCTTCATTGACCGACTGCAACTCTTCCTTCGAGGTTTCCAGCTCTTCGTTAGCGGACTGCAGCTCTTCGTTGACCGACTGCATTTCTTCGTTGGCCGACTTCA

>NZ_CP013692|6|6|3971079-3971185|CRISPRCasFinder
CAGCTCTTCATTGACCGACTGCA	ACTCTTCCTTCGAGGTTTC
CAGCTCTTCGTTAGCGGACTGCA	GCTCTTCGTTGACCGACTG
CATTTCTTCGTTGGCCGACTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013692.1\|WP_058721117.1\|3953540_3954329_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP013692.1\|WP_058721132.1\|3984784_3986095_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|236981
NZ_CP013692.1\|WP_058721126.1\|3975480_3977202_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
NZ_CP013692.1\|WP_058721124.1\|3964679_3966863_-\|malate-synthase-G	unknown	unknown	gnl\|CDD\|235097
NZ_CP013692.1\|WP_058721125.1\|3967030_3967951_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP013692.1\|WP_082680120.1\|3967954_3970300_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|236645
NZ_CP013692.1\|WP_058721119.1\|3955561_3956317_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NZ_CP013692.1\|WP_058721130.1\|3980230_3981745_+\|RNA-polymerase-factor-sigma-54	unknown	unknown	gnl\|CDD\|235648
NZ_CP013692.1\|WP_082680122.1\|3981810_3984627_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_CP013692.1\|WP_058721116.1\|3951756_3953460_-\|carboxypeptidase	unknown	unknown	gnl\|CDD\|349476
NZ_CP013692.1\|WP_058721129.1\|3979451_3980231_+\|LPS-export-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213185
NZ_CP013692.1\|WP_058721122.1\|3961244_3964052_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP013692.1\|WP_058721120.1\|3956331_3957597_-\|geranylgeranyl-reductase-family-protein	unknown	unknown	gnl\|CDD\|273936
NZ_CP013692.1\|WP_058722411.1\|3977978_3978641_+\|thiol:disulfide-interchange-protein-DsbA/DsbL	unknown	unknown	gnl\|CDD\|239317
NZ_CP013692.1\|WP_082680123.1\|3986086_3986857_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|236959
NZ_CP013692.1\|WP_058721118.1\|3954325_3955441_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NZ_CP013692.1\|WP_058722410.1\|3974049_3975414_-\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP013692.1\|WP_058721128.1\|3978756_3979455_+\|lipopolysaccharide-transport-periplasmic-protein-LptA	unknown	unknown	gnl\|CDD\|274384
NZ_CP013692.1\|WP_058721127.1\|3977198_3977921_+\|SPOR-domain-containing-protein	unknown	unknown	gnl\|CDD\|225629
NZ_CP013692.1\|WP_156422240.1\|3957769_3960730_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657

Protein	Function_ID	Function_description	E-value
NZ_CP013692.1\|WP_058721117.1\|3953540_3954329_-\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	4.78836e-56
NZ_CP013692.1\|WP_058721132.1\|3984784_3986095_+\|RNA-methyltransferase	gnl\|CDD\|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	3.29948e-109
NZ_CP013692.1\|WP_058721126.1\|3975480_3977202_+\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
NZ_CP013692.1\|WP_058721124.1\|3964679_3966863_-\|malate-synthase-G	gnl\|CDD\|235097	PRK02999, PRK02999, malate synthase G; Provisional.	0
NZ_CP013692.1\|WP_058721125.1\|3967030_3967951_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.99127e-87
NZ_CP013692.1\|WP_082680120.1\|3967954_3970300_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	2.24169e-113
NZ_CP013692.1\|WP_058721119.1\|3955561_3956317_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	2.58983e-141
NZ_CP013692.1\|WP_058721130.1\|3980230_3981745_+\|RNA-polymerase-factor-sigma-54	gnl\|CDD\|235648	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed.	0
NZ_CP013692.1\|WP_082680122.1\|3981810_3984627_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.04324e-121
NZ_CP013692.1\|WP_058721116.1\|3951756_3953460_-\|carboxypeptidase	gnl\|CDD\|349476	cd06905, M14-like, Peptidase M14-like domain; uncharacterized subfamily. A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavages. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.	1.43892e-161
NZ_CP013692.1\|WP_058721129.1\|3979451_3980231_+\|LPS-export-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213185	cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system. The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.	3.1764e-148
NZ_CP013692.1\|WP_058721122.1\|3961244_3964052_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	8.48489e-27
NZ_CP013692.1\|WP_058721120.1\|3956331_3957597_-\|geranylgeranyl-reductase-family-protein	gnl\|CDD\|273936	TIGR02032, Uncharacterized_protein_MJ1520, geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll].	2.53736e-45
NZ_CP013692.1\|WP_058722411.1\|3977978_3978641_+\|thiol:disulfide-interchange-protein-DsbA/DsbL	gnl\|CDD\|239317	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.	6.65835e-59
NZ_CP013692.1\|WP_082680123.1\|3986086_3986857_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	8.24703e-75
NZ_CP013692.1\|WP_058721118.1\|3954325_3955441_-\|sensor-histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	1.89218e-29
NZ_CP013692.1\|WP_058722410.1\|3974049_3975414_-\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	2.62469e-85
NZ_CP013692.1\|WP_058721128.1\|3978756_3979455_+\|lipopolysaccharide-transport-periplasmic-protein-LptA	gnl\|CDD\|274384	TIGR03002, outer_YhbN_LptA, lipopolysaccharide transport periplasmic protein LptA. Members of this protein family include LptA (previously called YhbN). It was shown to be an essential protein in E. coli, implicated in cell envelope integrity, and to play a role in the delivery of LPS to the outer leaflet of the outer membrane. It works with LptB (formerly yhbG), a homolog of ABC transporter ATP-binding proteins, encoded by an adjacent gene. Numerous homologs in other Proteobacteria are found in a conserved location near lipopolysaccharide inner core biosynthesis genes. This family is related to organic solvent tolerance protein (OstA), though distantly. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	2.95787e-29
NZ_CP013692.1\|WP_058721127.1\|3977198_3977921_+\|SPOR-domain-containing-protein	gnl\|CDD\|225629	COG3087, FtsN, Cell division protein [Cell division and chromosome partitioning].	3.57268e-18
NZ_CP013692.1\|WP_156422240.1\|3957769_3960730_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	3.30395e-22

>NZ_CP013692.1|WP_082680120.1|3967954_3970300_-|bifunctional-diguanylate-cyclase/phosphodiesterase
MSVEDGSTPTARATLQRLRERAETRFRSLHALALSPRDAVGAAPIQAPESLLHELRVQQIELEMQNEELRSSQLDLETSRARYFDLYDLAPVGYCSLGEAGMIEQINLALASLLGQPRSHLLRHRFAAFICPEDQDIFYRYRLLLQRSGEPQSFELRLRSREGGQEGSQKGTQKGGQDGGTRWVQIQASCAQVEGGESLMHLAVMDIDARKQAEQANSLAAKVFTHAREGIMITAPDGSILAVNEAFCRITGYSVEEIVGCNPRLFGSGRQNADFYRNMFAELRSHGHVQIDIWNRRKTGELFASMQTITAVLDAAGNTVNYVSLFSDVTVQREQEAQLRHLAHFDALTHLPNRLLLADRLQQAMLQAQRRGNQLAVAFLDLDGFKAINDQHGHEVGDLMLIALAEHMKNALREGDTLARLGGDEFVAVLVDLDDVPASLPMLTRLLAAAAQPLQVRGTTLQVSGSLGVTFYPQGIEIDADQLLRQADQAMYQAKLAGKNRYHVFDAEQDRSVRGHHESLQRIRQALHQGEFLLYFQPKVDMRAGLVLGAEALIRWQHPERGLLAPAEFLPVIEDHPLAVEVGEWVIDATLRQQELWLQQGLAMSVSVNIGARQLQQADFVARLRLLLAAHPAVNPAGLELEVLETSALEDMSHVVRVMNECKTMGVRFALDDFGTGYSSLTYLKRLPVAELKIDQSFVRDMLDNPVDIAILKSVIGMAQAFGCEVIAEGVETAQHGALLIGLGCDLAQGYGIARPMPAADLPGWVQQWQPHFSWTEQRLP
>NZ_CP013692.1|WP_058721125.1|3967030_3967951_+|LysR-family-transcriptional-regulator
MDRLKQIESFVSVATRGSLTAAAAVEGVAPAVMGRRIDALEARLGVKLLLRTTRRITLTHEGSAFLEDCQRLLVEFANAESSVSAGGVKASGLLRLTAPAGFGRRHVAPLVPDFLALHPDVSVSLNLSDRVVDIAGEGYDCAVRLGDLPDSSLVSQRLADNRRLCVGAPAYLKRAGAPKHPSELARHACLMLSSDASQTRGWAFRIDGELSHLRPSGRLDCSDGQVLHDWCLRGLGLAWRSTWEVEQDIAAGRLQTVLDDFAAPPNGIYALLPQRKHLPLRVRLWVDFLKQNYAKPEYWRNSAKSA
>NZ_CP013692.1|WP_058721124.1|3964679_3966863_-|malate-synthase-G
MSTARTTHHGLQVATELAQFIEQEVLPGTGVDAAKFWAGFDAIVQDLAPKNIALLAERDRLQTELDSWHSAHPGPIADMPAYRAFLEQIGYLVPAPGAVQISTANVDAELATQAGPQLVVPILNARYALNAANARWGSLYDALYGTDAISEADGAEKAGRYNPVRGAKVIAYARQVLDQAAPLAQGSHKDATGYRIEGGQLQVSLAGGAVTGLADAAQFVGYQGEASEPHSVLLRHNGLHLDIQIDRSTAIGASDAAGVSDVVMEAALSTILDLEDSVAAVDAEDKVLAYRNWLGILKGTLTEELEKGGKTITRRLNADRTYTAANGQGQVVLHGRSLMFVRNVGHLMTNPAVLYANGTKEIPEGILDAVVTTTIAIHDLQRKGNSRTGSVYIVKPKMHGPAEVAFASEIFGRVEALLGLPANTVKLGIMDEERRTSVNLKACIAAAASRVAFINTGFLDRTGDEMHTAMQAGAMFRKGDMKTSAWIAAYERSNVLTGLSCGLRGRAQIGKGMWAMPDLMAAMLEQKIAHPKAGANTAWVPSPTAATLHALHYHQVNVAAVQQELEKIDADAERHAILNNLLQIPVVAKAEWSAAEVQQELDNNAQGILGYVVRWVDQGVGCSKVPDIHNIGLMEDRATLRISSQHIANWLHHGVTNAAQVNATFERMAAVVDAQNAGDAAYQPMAGHFKTSAAYQAALDLVFKGLVQPSGYTEPLLHAWRLKVKAS
>NZ_CP013692.1|WP_058721122.1|3961244_3964052_-|TonB-dependent-receptor
MLMLRNCKFSAVSAAVFTVVALSAQAQTAPAQQLERVEVTGSNIKRLAAETASPVTVVTRSEIKQTGANTVRQVLDTITSTTTNEISDNGNSTSFAAGATGASLRGLGKGATLVLMNGRRVAYYALADGAKETFVNVDSIPADAIERIEVLKDGASAVYGSDAMAGVINIITRKDFEGVGVSANYQTGVSPALQKQATASVVAGFGNLAKDRFNVLVNAEFYKREGYTLADALSSYAPYHKQIVNPALGDPSLTSYPGNLIKGKVVNGSFVQATSGARVPVPSCPASQKNSAGACTTDINSLNQSYDPAKRMNLFASGRYLVSDTIEAFGEASYSKTTTDYLALPYGMNAPGTQFKWFDGNSKKVQLVNKPLLAANNPANNTGGVAGLEYRFMDDLGMWSTPADASQYRVQAGLKGTFGNWDWETVIGRIGADGQKDGIGAHRTDFINAVSSGEYKIGGANSSELLGRMFRKHGMEGSNSTNYIDAKLSGELFNLPAGAVMGAFGVEHREESVKIKSTENLLNAEIISTGSVWIEGDRKQDAAFAEVEAPLFKGFTANAAVRYDKATGFDGHFSPKLGARFEVLPQMLMLRGTVSEGFRAPNIPETLGKVGLTGFFNNTVDPKRCDTATKIRDILKNGDANDKQDATSAFNSGCLVSVPAMISANPNVKPELSRSATVGFVFDPTKNLSIAVDYYKIERRDEIAYRDPDYVLAREADAGYKDLIARVPVSGTDLARAARANQLDPKANVSWGAGELVTLLLQYENFGKTESSGIDFDIKGRVSSPEFGTLNLGLNATYALTMREWDIEANEFRPNRVGNRNAPRLRSIFSVAWSKNDWTGGLRFNYTSATKLNNDETDAASWGEAACQARLKPGAYPCYIDSYLRTDLNVSYRGFKGLTLGLNIGNLMNNPAPVNLRDGFALRPRTVKVGAEYRF
>NZ_CP013692.1|WP_156422240.1|3957769_3960730_-|TonB-dependent-receptor
MVLFKKPKISVVGAAVYLSLGALAAPAFAQQAAGQQLERVEVTGSRILSMNAESAAPIQVMTSADIAASGVANVQELLAKSPLFVPGNSRTNSNFQTSGAGVSTIDLRGLGAARTLVLVNGRRYISGVPGSSEVDLNTIPTDFIERIETLTGGASSTYGSDAVSGVVNIVLKKAFEGLVLNAQAGRSTKGDNDKKIVSATLGSNLANGKGNLMAHIAFTKEGAVYARDRGWDTDDISTAQLTGDAADIFSVTKPFYSSFAPQGRFFYGPKRANGTYASYTYDAAGKEIPFSTNGPDGDGVGATGFNRQYYRAIAVPTDRFLLATKGDYALNDQHTVFFEGTYASTKTKSDIEPFPLDSININKASGGLIPAEFMVGGVKMRNPLVPDYLYSRAVDRDGDGLKDYNFTRRMSDFGGRTSTAERDTFRVLTGVKGDLTKSWSYEAFASYGFTKEGQTGTGQVNVLNFRNALEAVADVNDVNGNGNRTEAICLDANARAQGCVPANIFGKGTLSADAVKYINAPSSLNTKITQKVVGASVSGEAFELPAGPVGIAAGAEWREETSSTSYDALTQAGLNAGNALPNTQGSFNVKEAFVEAKLPLLKNLPFVRNLDASAAVRVGKYSSVGNVTSWTGGLDWAVNTMVRVRANTAVSTRAPNVGELYSAPAQTFPSGISDPCEGAKATGTTVTDIACRADAGVAANMAANGGVFTLNQADKQGMSGYDSGNPNLKAEKGTSTTLGIVITPKSVPLLKNFAFTADYFDIKVTEAIGSPGRTFTLNQCYAGGDQSFCKFIVRRQNTAGSNSAGSLEYVNQTQENSGGLGTRGVDVTAAYNELVGPGRLNAKLAYTYLIKSYYVPRPGADTDYSTGEVGSARNKWTLNLGYDFGNIGLKATTTFIGQSKLDDQYMTDFPDATAKQSQVASKTYLDLQGSYTMGKAQFYLGIDNALNTKAPMIPSGVSGNTTGTQTNATIYDVLGPRYYVGIRYSM
>NZ_CP013692.1|WP_058721120.1|3956331_3957597_-|geranylgeranyl-reductase-family-protein
MTADQPRQADSTGANAAVPDRCDVLIVGAGPAGNACARVLAQAGLDVLLVDQQPQGRDKICGDGLIPDAHAALKRLGLLDQVMSQSQHVTHVGCIGPRGGRIDVPGSLAVLPRRQLDNLMCQAAQDAGAKFLAPARFEKPLEDGQGRVNGALLKVGDALVEVQAQWLILATGAVPKALQAAGMCERHTPSGVALRGYVRAPEMVGKIKALEIVWGEAVRPGYAWIFPAPDNCFNIGVGVTDSHSAVGGKGSKKELNLRNILDAFVASYAPAAELMRVGEVVGDFKGAPLRCSLNGARWSRPGLMVTGEAAGSTYSFTGEGIGKAMETGMLVADAILAGRAKSQTEGEVRQAYELSLKALKPKFDLYHRANRVNAFPLLADILIWRAQRSPRLLQRMSGVLNETSNPGNLVSLKGFSRLFLE
>NZ_CP013692.1|WP_058721119.1|3955561_3956317_-|class-II-glutamine-amidotransferase
MCQLLGMNANTPTDVMFSFTGLATRAEEHKDGFGIAFFEGRGLRHFVDHHSARVSPLAKLVQDYPIKSDNVIAHIRKATQGQVALENTHPFQRELWGRYWVFAHNGNLKDFHPRLHAAFRPVGDTDSERAFCWLMQELAKAHCAVPSIEELTHTLRELCPQLNAFGTFNMLLSNGQALWAHGSTHLHYLLRRHPFGRVHLQDEDLSMDFASHTTMQDRVAIIATEPLTRDEPWVAFAPGELKVFVDGVVHA
>NZ_CP013692.1|WP_058721118.1|3954325_3955441_-|sensor-histidine-kinase
MTQDNKFSLHWSQWVCPGPRRKFSADEMARAGQQPWPKAIDGYVMSNVVVLLAINYVEMSRHWAVLICLSVLAANYAVLAVARHLWRAPTRLNLNLSTLVLALVTIGLELLFKFWPPLQLEQKALLVTSAAMLGGMVMVALAWWFLIILRVQQIEARLRELDEQARSVQLARRLATAQIQPHFLFNTLASVQHWVDTQDARAGSTLRAFTAYLRATLPMFEREALSLDEELQIVRNYLLVMQARLGSRLSWTIDADPALAQLQLPPGLLLTLVENAIGHGIEPSLRGGSIVVRAQQACDLLRLEVQDDGVGLSCTADSAPAASPPGTGGVGLSNARARLAQLHGAAARLSLLAQTPGCLACVEIPKAKEHA
>NZ_CP013692.1|WP_058721117.1|3953540_3954329_-|response-regulator-transcription-factor
MSAKTRITALIADDEEAPREQLRAALQRQWPELQIVAASENGVDAWDDALAHEPQLCFLDIRMPGLSGLEVARRLAELAEPPQVVFVTAYGDHALQAFEAGAIDYLMKPVDEARLAQCLAKLRARLAAPSAAPGQSQGPDLQALLQQLLPQAKPRQARPIQASLGREIKLIAPEEVIYFESDNRYTRVIHQGGEALIRTPLKELLTQLDEAQFWQVHRSVLVNSRCIASALRIDENSMVITLRGREEKLPVSRQFQGLFKGQ
>NZ_CP013692.1|WP_058721116.1|3951756_3953460_-|carboxypeptidase
MAALPTPRFDEFYRYEPLTELLFAFAEARPNLVSVRSIGKSFEGRDIWVLVLTNTATGADVDKPAFWLDGNIHAAELTASTTCLYYLNHLVTGYGVNPEVTQLLDTRAVYMVPRLNPDGAELALADRPRHIRSSTRPYPFDEAPVDGLSAEDVDGDGRILTMRIRDPHGGYKKHAEEPRLMVAREPGEFGGEYYRLIPEGFIKNHDGLTVTVNKDREGLDLNRNFPSEWRQEYKQVGAGPYPTSEPEVRAMVDFIIAHPNIGAAISYHTHSGVILRPMGGCSDEDMIPEDLWSYKRFSALGEKLSGYPAISIWHDFKYHPKEIITGTQDWVYEQLGALFWVVELWSPNKEAGIEGYKWIDWYREHPVEDDLKLLKWSDEQCGGQAHVDWREFHHPQLGDVEIGGWDKMNFWRNPPPALREREAARFPAWMDQIALSLPKLEILRTEVRALGPDTWRIRLAVANSGYLPAYVTKRALERKVVRGVMFEIHLPVNQPEVSLVSGKERMEGPQLEGHAPKSSQQAFLPSREVTADRAVGEWVVRAPQGTRLALTACADRAGTVRTEVVLD
>NZ_CP013692.1|WP_058722410.1|3974049_3975414_-|protein-kinase
MSDDDTSLPIEPKLDLPAYIGRYKILRRLGEGATSDVFLALDEFKGGEVAIKRMRAWAVTSRSGEGSDYGSRFYAAEAALAGRLQHPNVVQILDAVPEQDAPYLVMEFVPGLTLKHFCRSDRLLPLDQIVELGFKCAMALSYVFRQGVIHRDVKPANLLAVLDAQGQVTDVKVSDFGSALNLRSDATQVHRVGSLAYMPPEQIEGGDVDCRADIYALGAVLYHLISGRPPFDAPSQMALMHQIYHQAPATLVGQRSGVTAELDSVIMRALAKHPESRYANWEEFGRGLSELVAKQLVPLARLYEVKDSERFNMLRELEFFADFGDVELWEVVHRGRWRRFPEGHALYKRGQEGNTFHIISQGAVEVYRDGAMVAALGKGTSVGEMAYLAPNPALRQHSADVKVSELCTTISFTPESLGLLSPECQHRFDRAFIQVLVRRLHAAHESLAHPRRIL
>NZ_CP013692.1|WP_058721126.1|3975480_3977202_+|arginine--tRNA-ligase
MIQAKQELLAALAEAIQELSPGADLAAAFESPKQAALGDYACTAAMQLARPLKKNPRELAQALIEALQRRPAFERWVEAMEIAGPGFINIRLKPAAKQAVVAEVLSAAADFGKQPANEQHVMVEFVSANPTGPLHLGHARQAALGDAICSLFQTQGSQVTREFYYNDAGVQIATLANSTQCRLKGLKPGDAGWPESAYNGDYIQDIADDFLAKKTVKADDREFTASGDVDDLDSIRQFAVAYLRHEQDLDLQAVGVRFDNYFLESSLYSSGAVESTVAKLLASGKTFEEGGALWLRSTDYGDDKDRVMRKSDGSYTYFLPDVAYHINKFQRGFTKCINVQGTDHHGTIARVRGGLQAAGVGIPQGFPDYVLHKMVLVMKGGVEVKLSKRAGSYVTMRDLIDWTSRDAVRFFLISRKADTEFTFDIDLALKQNDENPVFYVQYAHARICSVIRNWVSRGGDAAVLASADLSLLTAPTEAALMLKLADYPAMLTRAAEGLAPHDLTFYLRELSSSYHSYYAAERVLDQTPELSLARVALLAATRQVIANALTVLGVSAPEVMAREAVVTTTSENT
>NZ_CP013692.1|WP_058721127.1|3977198_3977921_+|SPOR-domain-containing-protein
MSVGAKNQKAGQKGGFVLGLIVGLLVGLAVALGVALYITKVPIPFINKVPQRTAEQDAEEALRNKNWDPNAPLAGKAGAKAASGVVSPAPVTTPAPVQSTAPAAATTAVEPAPAAATTHVPAQVPAPAPAKAAEKAAEKTSDKAASEKKPESKAAAAAPAADPNVYFVQAGAFTKSDDAEAQRAKLAMQGLSAKITEREQSGRTVYRVRLGPFDARDEAEAQQRKVEGAGMEANLVTVKR
>NZ_CP013692.1|WP_058722411.1|3977978_3978641_+|thiol:disulfide-interchange-protein-DsbA/DsbL
MKRRDFSATLGLSVLGAGSLPGLALAQGAPVEGKQYLKLSQALPSTPGKIDVLEFFWYGCPHCFTFDPTIEAWSKQLPADVNFRRVHVGFRANIKSHQKLFFALEAMGKEAEVHTAVFNAFQRDMPEDDKAVMALAGRLGLDMAKFTAAYNSFGVQTKCAQASKLSEEYRIDGVPAIGIAGRYLTSPSIAGVRGAGEIVNGQQALAVTDYLIKLVRSSKG
>NZ_CP013692.1|WP_058721128.1|3978756_3979455_+|lipopolysaccharide-transport-periplasmic-protein-LptA
MVCKNCAAMKTPCIRPSRPSARAVAQDIANAGRVALAVALMLGAATIAHAEKADQFKPLNIASDQGGRVDMARQRTEFNGNVVLSKGSLLLKAERIDVRETGDGYFQAYANGQTGKQVSFRQARDIPGEAIEGFADQVEYDTRSDTVRFIGNAVVHRTMGSSVADEVSGAVIVYDNRSEVFTLDGGKTSPHPTGRVRVVIMPRGSAASAEPAASSGLTLQPSTQLPSSKKAP
>NZ_CP013692.1|WP_058721129.1|3979451_3980231_+|LPS-export-ABC-transporter-ATP-binding-protein
MSSAPPISGSSAPRSRLDATGLAKSYGVRKVVKNVHLGVDSGEVVGLLGPNGAGKTTSFYMIVGLVRADAGEIHIDGKEVQHLPIHQRARLGLSYLPQEASIFRKLTVEENIRAVLELQLDANGRPLSKARINELLENLLHDLSIEKLRDSPAPALSGGERRRVEIARALATQPRFILLDEPFAGVDPIAVLEIQRIISFLKARGIGVLITDHNVRETLGICDRAYIISEGAVLAEGTPAEIVDNADVRKVYLGENFRM
>NZ_CP013692.1|WP_058721130.1|3980230_3981745_+|RNA-polymerase-factor-sigma-54
MKQSLQLRLSQHLSLTPQLQQSIRLLQLSTLELNQEIEQMMAQNPLLDTEDDISVAAPEISEPLRASAADDSSADTELGGGADAESTPELRAEDFGSTERDDWENGTERDDFDGIRELPSNHNSGSASNDGDDDRSEQEFAEISLQEHLNQQLAGMHLSQADRMALQVLIESLGEDGYLEDTLEDIAQALTTDAEEQEELLDHLRIALKWLQNMDPGGVGARDLAECLTLQLRALPRSPAQVIAILICKSHLELLAKRDSKKLMALTGADEPLLREAQALIRALDPKPGRRFAQGQSQAVIPDVIVRKVGRELRVMLNPEVAPKLRINEMYANALRQTRGGISNSALGGQLQEARWFIKNIQQRFDTILRVSKAIVERQKGFFTHGALAMKPLVLREIADELGLHESTISRVTTAKYMATTFGTFELKYFFGSGLSTEAGGNASSTAVRALIKQFVEAEAPNKPLSDSALANMLEEQGIQVARRTVAKYREALKIAPANLRKPC
>NZ_CP013692.1|WP_082680122.1|3981810_3984627_+|EAL-domain-containing-protein
MSSPAPHSANRPGSAFCIQQFHAQWLVFALVCAIVAVSAGIWLRHERAQLQQQESQRLQGLVQVLDGIVAQQLHGIQAALQTIDDSHGKWRNSQMQQDARPLLSALAQAMPGVRMAAIIDARGRMRATSLAELPNFDASTRDYFLMPKTAPQYGMLYVSPPYSNALGEYTMSLSRALFDARGQFAGVAMVTLDPDYFKLVLGTAQTSDDTWSALVHADGMLYSLRPQNNDWMGRRLLDRPGSLLARHLASGQDASVQQGLALVSRDERLTALQTVRTPGLQTNRALIVAVGRQISALEAPWQRQWQQTLGAGLLLAMVSGLALWLRQRRLRSIAALREAQRRSDHDKAQHTQAVLDNMVDGVITIDARGLILSFNASACRMFGYSAEEVIGRNVSLLMPEPEASQHDGYLRNYLGGNQARVIGVGRDVTGRRKSGSNFPMSLAVSSIERDGEPLFIGLTRDITERKRAEAAIEKLAFNDPLTGLPNRRLLLDRLNQTLASAQRQGRHGAVLFIDLDNFKSLNDTLGHGMGDLLLQSIAQRLLGTVRAQDSVARWGGDEFVVLLQDLGQDYAEAAQHAEAAAEKILRVLGQPYQLKDHLHHSTPSIGIKVWGAGDGSSSEDLLKHADHAMYQAKAGGRNQLCFFDPVTQAAMAERATLEADLRGALQNDQFALYLQAQVNQHGQLTGAEVLLRWQHPQRGWISPAQFIPLAEQTGLIVPLGAWVMQQACALLALWAGQPRLEGLSLAVNVSAVQFRHKGFLSTLQQILARSNAPTERLKIELTESALVDDVEGVIRLMTELGRLGVGLSLDDFGTGYSSLAYLKRLPLKQLKIDQSFVRDLISEPNAHAIAHAIVQLGDSLGLHVIAEGVETEAQRDLLAQLGCHAYQGYLFGRPMPIEAFVAGALQWPKPMAGQTQTAEPLLTQVTSEDRPADAPLPA
>NZ_CP013692.1|WP_058721132.1|3984784_3986095_+|RNA-methyltransferase
MFSPTDKLHLFVSCASGVERLLDEEVRGILPKTHIEVLRGGIALKGDLEAVMKLNLESRLAQRVLIELIGGGYRHEDDIYALACKIDWTQWITPAETIRVDTIAQRSPLRSLNFATLRVKDAICDVLRDATGERPSVDTRYPDLPVMLHLSETDATLYIDSSGEPLFKRGWREDKGDAPLKETLAAAMLAAAGWKGTPEAGGALHDPCCGSGTIAVEAAQIACGMAAGMQRRFAFERQLPFVPLRGRWQAIKQAAKDREHAPAVPIYCSDVAFRMVDFARRNAERAGVAQYIQFNGGDALERPAPELPYGMPGTIMMNPPYGERIEVRGKAGNFQMSRDAGGSEARDAGDDFFPRLAAHWKRAYTENPAGWTAWLLCPDMKLPSKMRLKESRKIPMWNGPIECRMFKFDLIKGSARTPKPGREGESNGDSAAADSN
>NZ_CP013692.1|WP_082680123.1|3986086_3986857_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MLPRLFVDTPLAELHPHSDTDAAGPIELVLPAGAARHVQVLRLQPGAALNLFDGSGFDWQAEVLRMGRSEVVVQLHSRQLVHRELAHAVRLCVVMPANDRMDGVIEKATELGAAAVQPLMSERSVLRLTGERAEKKQAHWQGVAVAACEQSGRSVLPRVEAVSTLQQWLKSLPPVTAQQRRWLLSPTAARPLRELAAAQPEATSTLVLSGPEGGLSPAEEQAARDHGFEAVQLGPRILRADTAPLAVLGWLALQSV

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Crispr_ID: NZ_CP013692_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013692_7

4215308-4215400

Orphan

Consensus_repeat	Method
GAGCGTAGCGAGGGAGTAGCTCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013692_7

>merge|NZ_CP013692|7|4215308-4215400|CRISPRCasFinder
GAGCGTAGCGAGGGAGTAGCTCTGTCACCAACTGATTGAGTGCGTTCTTGCGTGACAGACCGCCCGAGCGAGCGTAGCGAGGGAGTAGTTCTG

>NZ_CP013692|7|7|4215308-4215400|CRISPRCasFinder
GAGCGTAGCGAGGGAGTAGCTCTG	TCACCAACTGATTGAGTGCGTTCTTGCGTGACAGACCGCCCGAGC
GAGCGTAGCGAGGGAGTAGTTCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013692.1\|WP_058721283.1\|4215854_4216958_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013692.1\|WP_082680148.1\|4225409_4225742_-\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|376620
NZ_CP013692.1\|WP_058721278.1\|4210133_4211675_-\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|235001
NZ_CP013692.1\|WP_058721289.1\|4223688_4225413_-\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|234942
NZ_CP013692.1\|WP_058721273.1\|4203478_4204609_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|224666
NZ_CP013692.1\|WP_156422097.1\|4215576_4215810_+\|DUF2805-domain-containing-protein	unknown	unknown	gnl\|CDD\|132682
NZ_CP013692.1\|WP_058721276.1\|4208116_4208785_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NZ_CP013692.1\|WP_082680146.1\|4219111_4219750_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|132044
NZ_CP013692.1\|WP_058722441.1\|4208947_4209595_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP013692.1\|WP_082680372.1\|4225760_4226231_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376392
NZ_CP013692.1\|WP_082680147.1\|4219659_4222434_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP013692.1\|WP_058721281.1\|4214738_4215281_+\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NZ_CP013692.1\|WP_058721280.1\|4213225_4214716_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP013692.1\|WP_058722442.1\|4217173_4218565_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392
NZ_CP013692.1\|WP_156422098.1\|4222575_4223523_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP013692.1\|WP_058721277.1\|4209594_4210137_+\|DUF2939-domain-containing-protein	unknown	unknown	gnl\|CDD\|378575
NZ_CP013692.1\|WP_054021782.1\|4226251_4226386_-\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|179004
NZ_CP013692.1\|WP_156422096.1\|4204765_4205188_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237110
NZ_CP013692.1\|WP_058721275.1\|4205262_4207851_-\|zinc-dependent-metalloprotease	unknown	unknown	gnl\|CDD\|379818
NZ_CP013692.1\|WP_058721279.1\|4211840_4213103_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173844

Protein	Function_ID	Function_description	E-value
NZ_CP013692.1\|WP_082680148.1\|4225409_4225742_-\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|376620	pfam01809, Haemolytic, Haemolytic domain. This domain has haemolytic activity. It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.	5.21858e-34
NZ_CP013692.1\|WP_058721278.1\|4210133_4211675_-\|glutamate--cysteine-ligase	gnl\|CDD\|235001	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional.	0
NZ_CP013692.1\|WP_058721289.1\|4223688_4225413_-\|membrane-protein-insertase-YidC	gnl\|CDD\|234942	PRK01318, PRK01318, membrane protein insertase; Provisional.	0
NZ_CP013692.1\|WP_058721273.1\|4203478_4204609_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|224666	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only].	8.69656e-36
NZ_CP013692.1\|WP_156422097.1\|4215576_4215810_+\|DUF2805-domain-containing-protein	gnl\|CDD\|132682	TIGR03643, TIGR03643, TIGR03643 family protein. This model describes an uncharacterized bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae El Tor N16961 has three identical copies. [Hypothetical proteins, Conserved].	1.32138e-08
NZ_CP013692.1\|WP_058721276.1\|4208116_4208785_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	1.71924e-31
NZ_CP013692.1\|WP_082680146.1\|4219111_4219750_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|132044	TIGR02999, Sig-70_X6, RNA polymerase sigma factor, TIGR02999 family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found in a variety of species including Rhodopirellula baltica which encodes a paralogous group of five.	5.62092e-40
NZ_CP013692.1\|WP_058722441.1\|4208947_4209595_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	5.35095e-43
NZ_CP013692.1\|WP_082680372.1\|4225760_4226231_-\|hypothetical-protein	gnl\|CDD\|376392	pfam00825, Ribonuclease_P, Ribonuclease P.	6.17635e-08
NZ_CP013692.1\|WP_082680147.1\|4219659_4222434_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	4.95316e-81
NZ_CP013692.1\|WP_058721281.1\|4214738_4215281_+\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	9.59876e-93
NZ_CP013692.1\|WP_058721280.1\|4213225_4214716_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.53218e-56
NZ_CP013692.1\|WP_058722442.1\|4217173_4218565_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
NZ_CP013692.1\|WP_156422098.1\|4222575_4223523_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	2.53003e-16
NZ_CP013692.1\|WP_058721277.1\|4209594_4210137_+\|DUF2939-domain-containing-protein	gnl\|CDD\|378575	pfam11159, DUF2939, Protein of unknown function (DUF2939). This bacterial family of proteins has no known function.	3.70184e-17
NZ_CP013692.1\|WP_054021782.1\|4226251_4226386_-\|50S-ribosomal-protein-L34	gnl\|CDD\|179004	PRK00399, rpmH, 50S ribosomal protein L34; Reviewed.	2.2255e-09
NZ_CP013692.1\|WP_156422096.1\|4204765_4205188_+\|hypothetical-protein	gnl\|CDD\|237110	PRK12472, PRK12472, hypothetical protein; Provisional.	0.00733242
NZ_CP013692.1\|WP_058721275.1\|4205262_4207851_-\|zinc-dependent-metalloprotease	gnl\|CDD\|379818	pfam16313, DUF4953, Met-zincin. This is a family of uncharacterized proteins that carry the highly characteristic met-zincin mmotif HExxHxxGxxH, the extended zinc-binding domain of metallopeptidases.	2.16927e-118
NZ_CP013692.1\|WP_058721279.1\|4211840_4213103_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173844	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.	0

>NZ_CP013692.1|WP_058721281.1|4214738_4215281_+|adenine-phosphoribosyltransferase
MSNATDIIRRHIRTVPDWPAPGVQFRDITPLLSNPRVFRVLIDVFVHRYFDVKPTAIAGLDARGFIIGSVLAYELNIGFIPIRKKGKLPFTTVEESYALEYGNATVEIHTDAVHPGDRIVLIDDLVATGGTMLAGARLLQRLGAEVVEAAAIVDLPELGGSAKIKAAGLPLFTMVDFEGT
>NZ_CP013692.1|WP_058721280.1|4213225_4214716_+|diguanylate-cyclase
MNRLFFPLQLRSWLGLTALAGLSLQGVLLFLIWPAGVLPSALMALALLLSLLCVVLTVQEMRRLRKRGKDLRRTLDEALEALPASVEIFDRNDRLMAYNRKLHEIYPHMQDAFRRGASFETLVRASLAQGRIPAAFGREQEWLAERLQARKLQREPLLQKIHNDRWLRIYERHMPSGGVVGVRMDVTDLIQEQQRLEASQAHLQAFVRATPNGVLTLDTAGHVLELNPACERLFGYSAEEMQGSHINLLFGRELLRPGRALADTLGEPMEVNAQHRHGEAMTLQLSMAEVHTETTHRFVCILTDLSERKRQELALQEANAQLARQSTTDGLTGIGNRRLFDQSLQQEWQRSARHAQSLACLMVDIDHFKQFNDHYGHVAGDDCLRRVAALLRACAGRSGESVCRYGGEEFVILLAGCDLAQAQLVAQRCLDSLRLAAIEHAASPLRKPLSLSIGVAACVPHADLAAQSLIEQADAALYRAKQAGRARMAVQTQAAA
>NZ_CP013692.1|WP_058721279.1|4211840_4213103_+|acyl-CoA-dehydrogenase
MNFDYSPKVQEMQARLLAFFDAHIYPNERRFLEEVEANRRAGNAWVPTRLIEELKPLARQAGLWNLFLPKSTRAPEGLSNLEYAPLCEIMGRVSWAAEVFNCSAPDTGNMETIERYGTEAHKTQWLEPLLRGEMRSAFLMTEPAVASSDATNIECRIERDGDDYVINGTKWWSSGAGDPRCAIYVVMGKTNPEAGRHEQQSMVLVPANTPGITVVRPLSVYGYDDAPHGHMEVQLKNVRVPVSNILLGEGRGFEIAQGRLGPGRIHHCMRSIGAAERALELMCQRAISRTAFGKTIAQQTVTQERIAESRCMIEQARLLTLKAAYMMDTVGNKVAKAEIAMIKIVAPNMALQVIDWAVQVFGAMGVSGDTPLALMWAHQRTLRLADGPDEVHRNSLAKLELSRHMKLPGGEVQMPITRGS
>NZ_CP013692.1|WP_058721278.1|4210133_4211675_-|glutamate--cysteine-ligase
MSDNDNKRLSAITSTELLGIRRGIEKESLRVLPSGMLALTPHPLPLGSALTHPHITTDFSESQVELITGVHAGVESCLQELTEVHQAVYQTLGRQPTAERLWVGSMPCGLPTDETIPLGRYGKSNIGRSKSVYRMGLGQRYGRRMQTISGIHYNWSLPGVSSEQYFGLIRNFRRHSFLLLYLFGASPALCSSFVAGRQHELQPIGAGSLHMPYGTSLRMGRLGYQSDAQSSLAVSYNSLESYGASLQDALTRPYPAYEAIGVQNPGGDYNQLSTSLLQIENEFYGTIRPKRVIQPGERPLHALRERGVEYVEVRCMDLDPFVPVGIAAQTVRFLDVFLLHCLTQPSPPDTPEEIRALAHNQHLVAGHGRDPQLRLQMVGGAAGTRSLQDWGAELLAQCLPMAQALDAAHGGEAYAQALAAAQSTLAHPESTPSARLLASMQQEFDNSYVAFLREQSEQTRQTLLAMPYSAEMAARFEAQAAASLAEQARIEAADVLDFEAYRQQYLAPQRMAV
>NZ_CP013692.1|WP_058721277.1|4209594_4210137_+|DUF2939-domain-containing-protein
MRARMLWGATLLSLSLLLGASIASPWWHVQQMRQAAQARDAAALSEYVDWEQLRANLKFGVQHRLAHQSVNARGEPTKAASLGAAVAAALLGPLVDQLITPQSLARILQGQPPETAVIPALELGKPSQAAGQPNISMAYAGLNRFVCSIQSAGHGEEPIHLVLHRQGLLSWRLAELSLPG
>NZ_CP013692.1|WP_058722441.1|4208947_4209595_+|LysE-family-translocator
MFGTQDLSLFIISGLLLNIAPGPDSLLIMTRSATQGWRAGSAAAFGIGAGTCVHVLAAALGLSALLAASSWAFTAVKAAGAAYLLYLGLSMLLSRSKVPAHEQQAPAETTASVPNYRKIFAQGFLTNVLNPKVALFFLAFVPQFIAPQAENKALAFIVLGAIFNFNSMLWCNGLALFTDLASRRVRVSQTLGLWLNRAIGALFLSFGLKLALAEH
>NZ_CP013692.1|WP_058721276.1|4208116_4208785_-|glutathione-S-transferase-family-protein
MITLYHCVSARSLRPLWLLEELGLPYQLQMLPFPPRALAREFLQHNPLGTVPLLVDGAARLSESAAICQYLAARHSPGGLDVAVDDAAFASYLNWLHMSDATLTFPQTLLLRYRYFEAPERRQPQVAADYQRWFLARLRAVEAGLQGQDFLCAGRFTAADVAVGYALLLAQHLGLADQFGPAVAAYWKRLQARPAFQRALRIQHEAAQAQGVPTTPAPDLRP
>NZ_CP013692.1|WP_058721275.1|4205262_4207851_-|zinc-dependent-metalloprotease
MTLKTHPKRQAPALSAIALAGLMLAALSSQAQEAPVPAGAAASAAAPGARPPAAAPDQEPKPFDKVITADAKSQAGLFNVHNVKGKLYFEIPKALLDKPLLMVATATAVPTGVDHVGKALNEDVVRFVQQGNKLYFQTVSHAAVADPARPIASAVEAAQRDTVLMSFPIEAFGKNGAPVIEVSRLFSSEVGDFSARGILKGSGLDASRSYVENSRAFPTSLRVDAVQTYGLINTPPVLPPGLPPGFVLPPVPPKSASVSVAYNIVQLPDTPMQARVMDDRVGFFSIAKVDYGSDAHESKRERLITRWRLEKKDPTAALSEPVKPIVWYIDKSTPTNLVPFVKRGIEAWNVAFEAAGFKNAVQARPFPSKEEDPEFDPADVRYSIIRWVPSPIPNAYGPHLSDPRSGEILNANIVMYHNIMQLQRDWYVTQAGAVDKRAQSLPLPDDLMGDLVGYVVTHEVGHSLGFPHNMKASSLYPVDKLRDAKWLKEMGHVPTLMDYSRINYLVQPEDKIDPALLIPKIGPYDIFATQWGYTPIPEAKTAAAEKPVLDSWIRAQDSKPWLRFTSPKGEGEYGDTTEAVGDADAVYATTLGIKNLQRIVKMLPGMTLKAGQDDKTLEDLYRATWSQWGRELGHVAAIVGGYNFHNKHGGQAGAVYAPASKAKQAQAVAFLNEQLFKTPSWLFEPAIVERVRPQEPGNLLLNQQRNALRSLLDRSRLARLQAQETAAVDGQAYRVDELLADLRAGIFGELQLGGSKITAARRNLQRAYVEQLGERLVAASSAGTDDAKASIRAELKTLKTLFANRAGAGDRTVKAQADELLDLTNRALDPRGLPAPSAAAAAMPGARALGDSHGHDESCWPH
>NZ_CP013692.1|WP_156422096.1|4204765_4205188_+|hypothetical-protein
MSDLWNKVKEAAHDAGEALAEASKQVAEKAEVLGDKASAAASSAWDATKEATHEAVASASELAHKAGEKAAEVAAEVAAKTAEAAGHAADKTSELAKQAADKATELAKQAADKSAELSAQAVAAIKSGSDAAAPGKKDQA
>NZ_CP013692.1|WP_058721273.1|4203478_4204609_+|patatin-like-phospholipase-family-protein
MNPVQTRSAPAIQAPVNLALQGGGSHGAFTWGVLDALLEDGRISFEGISGTSAGAMNAVAMAHGFAQAQAKARPDPREAAREALKSFWDGIVRMGAFGNALTAAERAPFSLLFGPCGSEYSPAASWMNAMSTIWSSTLSPYQSNPLDINPLRHFVAEQIDFDALAHASKAGTAPKVFVVATEVRSGKAEVFSGKRLTLDAVMASACLPTLFRAVEIEGLHYWDGGYCGNPAIHPLIYQCQGRDIVLVQINPIQRDELPTHSAQIMDRINEVTFNAGLVAEMRAIDFVKRLLAEGKLDPAHYKDVLMHRIDGGAELDAFGASSKTSTDATLIQDLHNLGRSHAQAWLAQHSEDLGQRSSINIKRDYLDDLRMPVHGD
>NZ_CP013692.1|WP_156422097.1|4215576_4215810_+|DUF2805-domain-containing-protein
MAKPIPRLSADQVKRIVATAWEDVPPYNKVLMEHGLGPGELVQLMKRQLTSSAYKLWQANGKGVKAPTKKPVWPYGK
>NZ_CP013692.1|WP_058721283.1|4215854_4216958_+|hypothetical-protein
MSKSIKHLLLALAILLALYAGASVLATLSQLANAADRIYSGAGQYLFWALTALFAGLAATPCLLYLRLPKPLIPPADRSEPAFSIYQADLLVALRRNPLLAGSPLNTPDDLPAALSLLNAKADEEALQAASATFVSTALMQNGRLDGLLVLLNQLRLVYRLMAVYHVRPSPRQALYVYGNVGAAILIASSIEDIDFSELATPMISAAAPGLAANLPGLGGISRLLTNSLANGAANAFLTLRVAMLTKQYCAALVQPELEATRRSASVAALALLGVVTRDCGVRVAKSVFKATGAVFTDAASATGQGVKDATQSVLGATAQMGSKVGRALVSSADSAKLLGLKAVRLGRKAEPGVQVALELGDEGKDS
>NZ_CP013692.1|WP_058722442.1|4217173_4218565_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MLSRHQDPIVAIATAPGRGAVGIVRVSSAQDLTLFVQALCGRALKAREACYLPFRAASGEAIDQGLALHFPAPHSYTGEHVLELQAHGGPVVLQLLLARCMEVGQALDLRMRLAEPGEFTQRAFLNGKLDLAQAEAVSDLIDASTEAAARSASRALAGALSSEVGELRDALIKLRMLVEATLDFPEEEIDFLQQADALGRLDRLRARLEAVLDRTRQGALLREGIKVVLAGQPNVGKSSLLNALAGAELAIVTAIPGTTRDKVSQTIQIEGVPLHISDTAGLRDATDEVERIGVARSWDAIAEADVVLFLHDLSRVGDADYEAEDAEIRARLGGVDPARILQVFNKADTVLTPQGQVLPQDALKLSAKTGAGLDELRQSLLQHAGWHATPEGLFIARERHVQALKRTREHLALAVAVSTQQPPALDLLAEELRLSHDALGEITGAFSVDDLLGEIFSKFCIGK
>NZ_CP013692.1|WP_082680146.1|4219111_4219750_+|sigma-70-family-RNA-polymerase-sigma-factor
MLPPPRVAHARQLRRSAVSGLALARHDGGRQRNSRLIGLVLTQEEVQASPLLEEELYRDLKAMARQRLRRSGPMTLLDTTALVHESWFRLSRRADWAAMGREHFMAYAATAMRSLVVDYARARQAAIRGGQATHLPFDELPTLAHRDEEYLALHEALTDLGRSDPGLARLVELRFFVGLEETECAELLGVARRTVQRDWQKARAVLWTLLTP
>NZ_CP013692.1|WP_082680147.1|4219659_4222434_+|serine/threonine-protein-kinase
MRGTAGRSPAHRTTRLAKGTRRTLDPVDPMNAPMLQHWAQIEPLLNELLALPEAQRPVFLDQLPADQQVWRDTLEQLMRADAAADAAGFLEQAASLPLGSTAPGQRPNAWQANQVLGPWQLIKELGRGGMASVWLARPAHGEFQREVALKLPHSPTPHLAERFRRERDVLARLNHPGIARLFDAGVTPEGLPWLAMEHVQGQELLGWCQAQQSTVRQDLTLLLQICDALQYAHGQLVVHRDIKPANVLVQADGQAKLLDFGIARLLEDADEPEQTTLTQLGQRPMTPEYASPEQVRGEAPGVASDVYALGVLAYRLLSGQSPYAGAMAQHRHALEQAILELRPPPPSQQAQEPTRRKALRGDLDTIVLKALAKEAGQRYATVEAMAADLRRHLDGKPVLARAPSWRYVAGRFVRRHRLGVAASALAVLALLGSTAWALRSASLARQEAARSDAMYGFVVGLFNPNNSPQPDIRERDMPVRQLIERGAQRVLDTLQDQPQARARLLADLSTLTQQLGLNALAKQLAAERVQMAQQTSGPQSVAYADALLGQRDGWEAQGQYKEGYEAAEQALAIYQAHKERDPIKLARAHMTLGGFGARLHAAGDEDIAHLRQAAALLEPVKGPSTLGTVYEQLMISHLSLGRTEEAFQDAMAGANANRRLWGSEDWKTGASEDQAGALAAMTLRPEQAQNLLQHGIDIIRQSMGADALLLARGEANLAQLLFAGEHRAEAMRHLQEAQRIAQLPAHTGQKAFSLTIAATTLELALRAQDWPQLRQRCKPWGQDVQAPQPTMRLRIIQACSASAIHEQDLERAEALLAQGRLVLSQSFAKVPARGAVLALRAGELAWARGDRSAAIAAWQDCLKQADDTGLAWQAQAWRRLVQAQAMDPEMNARLNTFRQRLLKAGGSKYYAEFLALLDGPATPA
>NZ_CP013692.1|WP_156422098.1|4222575_4223523_+|hypothetical-protein
MNNGKRIGTTALTAVALAALLSACGGGGGNSDGSAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPTPAPASVCSGNSWLAPTYDVYSTASPTATATMANYYGSSSTAPTQCISVGNTLQVTSSDGFNQVVSWADPIANNATSVGSMLNNGNLLFTCLSGSYKTNHLAVRSDTGAAVFKGSTARLMLGTAFAFRSLECGPNGTSTLRDATTVTVAADLASATVTDTTTSPASVTTFTAAQLDALFSPSGLVTGSGKTLRWVLYVVPVSTGLTKQVIVHTAVQSDGSVNVFSFVQP
>NZ_CP013692.1|WP_058721289.1|4223688_4225413_-|membrane-protein-insertase-YidC
MTDIRRTVLWVVFTMSLVLLWDGWQKHNGHPSMFSPAAPKAVATAPSAPGATGVPTPAALPGAAAVAGAEAPAPVAQVNEKVLVKTDVLNVTLDTLGGDVSRVELLSYLDAPEPGLFDPILEMVGIKQKHVVERKPIVLLDAATRSYKAQTGLVGSQGEQLPTHNTLMSVVPGERTLKDGMNELTVRMESPVVGGVKLVKTFTFKRGDYVVGVRHEVVNAGAAAVTPQVYVQLVRDGVAGPQGSSFTSTFTGPALYNESSKFHKVEFKDIDKGKVEIEKHADNGWVSMVQHYFASAWLHNGTGQREFFVNQVKGAAPTQYAVGMVFTMPTLAPGASQSRDDQLFVGPLEEKKLAALAPGLELAKDYGIFAILAKPLFWLLEKLHGMLGNWGWAIIALVVLLKAAFYWLNASAYRSMAKMKAVGPKIQAMRERLKDKPQEMQQEMMRIYKEEKVNPVGGCLPILLQMPFFMGLYWVLLSSVEMRGAPWLGWITDLSTKDPYFILPILMTLSSLLQVALGPKSPDPMQAKMMWFMPLAFSFMFFVFPSGLVLYWLTNNILSIAQQWMINKQLGVTN
>NZ_CP013692.1|WP_082680148.1|4225409_4225742_-|membrane-protein-insertion-efficiency-factor-YidD
MSSSTASSPTRASLAERLAVGLVRGYRLMLSPWLGASCRFSPTCSVYAIEALQRHGAAAGTYLAAYRILRCNPFCAGGHDGVPEHAPRLFAHLGLSKPVSPRPPTPEASP
>NZ_CP013692.1|WP_082680372.1|4225760_4226231_-|hypothetical-protein
MGRIVRSADFERVLGKPSRARSNHFAVHHLAAMPSKLPKPARLALALSTAQGELSTGDTQVAHSPVEELPPEGAWLGVVVPKRHAKRSVTRSLLKRQIRAAFEQQPLLPPGLWVVRLRSPFDRKLFPSASSEALRAAARAELQQLLGRVLNGPRKA
>NZ_CP013692.1|WP_054021782.1|4226251_4226386_-|50S-ribosomal-protein-L34
MKRTYQASKTRRARTHGFLVRMKTRGGRAVIAARRAKGRKRLAV

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Crispr_ID: NZ_CP013692_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013692_8

4906060-4906144

Orphan

Consensus_repeat	Method
TTGCGGGACAGACCGCCCGAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013692_8

>merge|NZ_CP013692|8|4906060-4906144|CRISPRCasFinder
TTGCGGGACAGACCGCCCGAGGGGGTACCCCGAGTAGCTCTGTCCCCAACTGATCAGAAGCCTTGCGGGACAGGCCGCCCGAGGG

>NZ_CP013692|8|8|4906060-4906144|CRISPRCasFinder
TTGCGGGACAGACCGCCCGAGGG	GGTACCCCGAGTAGCTCTGTCCCCAACTGATCAGAAGCC
TTGCGGGACAGGCCGCCCGAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013692.1\|WP_058721774.1\|4916975_4918061_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP013692.1\|WP_058721769.1\|4908336_4909281_+\|glutathione-synthase	unknown	unknown	gnl\|CDD\|235371
NZ_CP013692.1\|WP_058721760.1\|4889764_4890820_+\|DUF3108-domain-containing-protein	unknown	unknown	gnl\|CDD\|378635
NZ_CP013692.1\|WP_058721772.1\|4913730_4914942_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340928
NZ_CP013692.1\|WP_058722513.1\|4904170_4906054_+\|potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|225700
NZ_CP013692.1\|WP_058721765.1\|4899991_4902067_+\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224423
NZ_CP013692.1\|WP_058721761.1\|4891013_4891307_+\|DUF3567-domain-containing-protein	unknown	unknown	gnl\|CDD\|378810
NZ_CP013692.1\|WP_058721773.1\|4914925_4915453_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013692.1\|WP_058721768.1\|4907123_4908302_+\|benzoate/H(+)-symporter-BenE-family-transporter	unknown	unknown	gnl\|CDD\|281578
NZ_CP013692.1\|WP_082680239.1\|4893907_4894351_-\|response-regulator	unknown	unknown	gnl\|CDD\|381093
NZ_CP013692.1\|WP_082680240.1\|4915543_4916977_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|365848
NZ_CP013692.1\|WP_058721766.1\|4902171_4904019_+\|potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|225700
NZ_CP013692.1\|WP_058721767.1\|4906283_4907054_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|238889
NZ_CP013692.1\|WP_058721764.1\|4896924_4899882_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|227112
NZ_CP013692.1\|WP_058721770.1\|4909325_4911566_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|130728
NZ_CP013692.1\|WP_082680238.1\|4891452_4893819_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223540
NZ_CP013692.1\|WP_058722514.1\|4911740_4912847_+\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176260
NZ_CP013692.1\|WP_058721763.1\|4895824_4896808_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|274127
NZ_CP013692.1\|WP_058721762.1\|4894544_4895834_+\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|378081
NZ_CP013692.1\|WP_058721771.1\|4912851_4913697_+\|S-formylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|131868

Protein	Function_ID	Function_description	E-value
NZ_CP013692.1\|WP_058721774.1\|4916975_4918061_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.65851e-08
NZ_CP013692.1\|WP_058721769.1\|4908336_4909281_+\|glutathione-synthase	gnl\|CDD\|235371	PRK05246, PRK05246, glutathione synthetase; Provisional.	0
NZ_CP013692.1\|WP_058721760.1\|4889764_4890820_+\|DUF3108-domain-containing-protein	gnl\|CDD\|378635	pfam11306, DUF3108, Protein of unknown function (DUF3108). This is a bacterial family of putative lipoproteins. Structure 3fzx, the first structural template for this large family including several homologs in the human gut microbiome and in metagenomic datasets, folds into a beta barrel that topologically looks like a small-scale porin (such as FepA). Bacteroides fragilis glyA is a putative exported protein, and this fold is of the YmcC-like type, with a predicted signal peptide SpI cleavage site AGAMA\|QNQDC, and a Phobius server prediction of non-cytoplasmic localization for amino acids 21-236. The possibility of it being a membrane protein can be ruled out by the hydrophilic nature of the solvent exposed surface outside the barrels. Analysis of sequence conservation suggests that an area near Glu172/Trp206 is potentially interesting. These two residues are also conserved in Dali hit Structure 2in5, a hypothetical lipoprotein classified as a new YmcC-like fold in SCOP (SCOP:159271, with a 12-stranded meander beta-sheet folded into a deformed beta-barrel) despite large structural differences between the two structures, suggesting similarity in function.	2.49199e-06
NZ_CP013692.1\|WP_058721772.1\|4913730_4914942_+\|MFS-transporter	gnl\|CDD\|340928	cd17370, MFS_MJ1317_like, MJ1317 and similar transporters of the Major Facilitator Superfamily. This family is composed of Methanocaldococcus jannaschii MFS-type transporter MJ1317, Mycobacterium bovis protein Mb2288, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.72176e-126
NZ_CP013692.1\|WP_058722513.1\|4904170_4906054_+\|potassium-transporter-Kup	gnl\|CDD\|225700	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism].	0
NZ_CP013692.1\|WP_058721765.1\|4899991_4902067_+\|S9-family-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	1.86298e-54
NZ_CP013692.1\|WP_058721761.1\|4891013_4891307_+\|DUF3567-domain-containing-protein	gnl\|CDD\|378810	pfam12091, DUF3567, Protein of unknown function (DUF3567). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.	4.36814e-35
NZ_CP013692.1\|WP_058721768.1\|4907123_4908302_+\|benzoate/H(+)-symporter-BenE-family-transporter	gnl\|CDD\|281578	pfam03594, BenE, Benzoate membrane transport protein.	1.08857e-129
NZ_CP013692.1\|WP_082680239.1\|4893907_4894351_-\|response-regulator	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.95901e-26
NZ_CP013692.1\|WP_082680240.1\|4915543_4916977_-\|cytochrome-P450	gnl\|CDD\|365848	pfam00067, p450, Cytochrome P450. Cytochrome P450s are haem-thiolate proteins involved in the oxidative degradation of various compounds. They are particularly well known for their role in the degradation of environmental toxins and mutagens. They can be divided into 4 classes, according to the method by which electrons from NAD(P)H are delivered to the catalytic site. Sequence conservation is relatively low within the family - there are only 3 absolutely conserved residues - but their general topography and structural fold are highly conserved. The conserved core is composed of a coil termed the 'meander', a four-helix bundle, helices J and K, and two sets of beta-sheets. These constitute the haem-binding loop (with an absolutely conserved cysteine that serves as the 5th ligand for the haem iron), the proton-transfer groove and the absolutely conserved EXXR motif in helix K. While prokaryotic P450s are soluble proteins, most eukaryotic P450s are associated with microsomal membranes. their general enzymatic function is to catalyze regiospecific and stereospecific oxidation of non-activated hydrocarbons at physiological temperatures.	1.62707e-75
NZ_CP013692.1\|WP_058721766.1\|4902171_4904019_+\|potassium-transporter-Kup	gnl\|CDD\|225700	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism].	0
NZ_CP013692.1\|WP_058721767.1\|4906283_4907054_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|238889	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.	2.34002e-77
NZ_CP013692.1\|WP_058721764.1\|4896924_4899882_+\|TonB-dependent-receptor	gnl\|CDD\|227112	COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism].	2.02112e-23
NZ_CP013692.1\|WP_058721770.1\|4909325_4911566_+\|FUSC-family-protein	gnl\|CDD\|130728	TIGR01667, Uncharacterized_protein_HI_1680, integral membrane protein, YccS/YhfK family. This model represents two clades of putative transmembrane proteins including the E. coli YccS and YhfK proteins. The YccS hypothetical equivalog (TIGR01666) is found in beta and gamma proteobacteria, while the smaller YhfK group is only found in E. coli, Salmonella and Yersinia. TMHMM on the 19 hits to this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane.	9.33325e-20
NZ_CP013692.1\|WP_082680238.1\|4891452_4893819_+\|AAA-family-ATPase	gnl\|CDD\|223540	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones].	6.29289e-32
NZ_CP013692.1\|WP_058722514.1\|4911740_4912847_+\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	gnl\|CDD\|176260	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	0
NZ_CP013692.1\|WP_058721763.1\|4895824_4896808_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|274127	TIGR02424, TF_pcaQ, pca operon transcription factor PcaQ. Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate. Members occur only in Proteobacteria. [Energy metabolism, Other, Regulatory functions, DNA interactions].	2.25783e-32
NZ_CP013692.1\|WP_058721762.1\|4894544_4895834_+\|glutamate--cysteine-ligase	gnl\|CDD\|378081	pfam08886, GshA, Glutamate-cysteine ligase. This is a rare family of glutamate--cysteine ligases, EC:6.3.2.2, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase. The structure of this family has been solved, and is similar to that of human glutathione synthetase and very different to gamma-glutamylcysteine synthetase from Escherichia coli.	0
NZ_CP013692.1\|WP_058721771.1\|4912851_4913697_+\|S-formylglutathione-hydrolase	gnl\|CDD\|131868	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. [Cellular processes, Detoxification].	1.69804e-138

>NZ_CP013692.1|WP_058722513.1|4904170_4906054_+|potassium-transporter-Kup
MSSETTAHGKSALAGLTLGALGVVYGDIGTSPLYALKEVFNAGHVPLTPANIIGILSLVFWTLTIVVSLKYVTLIMRASNKGEGGTMALLALAGTAVADRPRLKLALLLMGILGAAMFYGDGVITPAISVLSAIEGLELATPAFKPYVVPITLGILFGLYAIQKHGTGAMGVVFGPITLIWFLVIAYFGVVWTLREPAVLAAINPLLALEFALTHGHVTLVVLGAVFLSVTGAEALYADMGHFGPKPIRLAWFGLVWPALLMNYFGQGALLLSNPAAVENPFFLMVPEGLLLPMVGLATMATVIASQATISGTFSVTKQAIQLGYLPRMRVIHTSIKETGQIYIPAVNWMQFGAIVAAVALFGSSSALATAYGIAVTATMVLTTLMTFFVTRYLWKYPAWLCFGATAFFLSIELVFLSSNVLKVFSGGWFTLAIAGAVFTVMLTWKQGRRLLSDKLREDAIDLKSFLDAVFISPPHRVVGSAVFLSAEPGMTPNALLHNLKHNKVLHEQNIFVTVKHHEVPWVTAAERVHIEELGNRCWQVSLNFGFKDEPDVPAALTLLAKHDVQLDDMETSYFLSRDIVIPTIGSGMALWREKLFASMHRNAAAAADFLHLPANRIVELGSKVQI
>NZ_CP013692.1|WP_058721766.1|4902171_4904019_+|potassium-transporter-Kup
MAGLTLGALGVVYGDIGTSPLYALKEVFHGGHVAPTPDNILGVLSLLFWTMTIIVSLKYVLLILRADNNGEGGLIAMLALATNAVNGKPALRRRLMLVGMFGTAIFFGDAVITPAMTVLGAVEGIDVYAPEFHEAILPLTLLVLAGLFAVQRMGTGGIGKAFGPVMVLWFVSLALLGLPHVLENPQVLAAINPAYALAFCMTHKLVAFIALGAVVLVVTGGEALYADLGHFGKKPIRIAWYGIVMPSLVINYFGQGAMLLESPEGIKNPFFLLAPSWAEIPLFVLATLAAIVASQALITAAFSVTKQAVQLGLLPRMRILHTSVRDTGQIYVPFVNWGLFVFIVLAVVLFGSSSKLAGAYGIAVTIDMTITTVMTFFVIRYGWKYPLPLCLLATGFFFVIDLTFLASNMLKLVAGGWFPLMIGIAMFTLMLTWKQGRRLLSNRLRDDAIELKSFLEAIFISPPLRVPGTAVFLAAEAGVTPNALMHNLKHNKILHAQNLFVTVKHHEVPWVAPEQRLSFENLGNDCWTVSLHFGFMNEPDVPVALQLLRQHGVQMEEMETSYFLSRDIVIPTIGSGMALWREKLFANMHRNAAAAADFLHLPTNRIVELGSKVEI
>NZ_CP013692.1|WP_058721765.1|4899991_4902067_+|S9-family-peptidase
MKKYQRTLQAWLVVLLLSAFTPGSLFAQERRLEPGPSLIAEGIPTLFKTSQPAAKEFVSARFVDWHPLRREMLVLAQAGGSLQLHLLNAPGAKPRALTEGRDAVAQASWEPERGEYLVFSRDQGGDEAFQLYRLKPSAQAEPLAQPLRISGAEGRVSDYQFLPQGRGLVYLWERLNRQSEAGAKAARPLSRLMWVDPAQAPPQPRELAAVEGGRFTDLAVSSGGSILILRTVQGRSQLLRFEMDGKPGRPLGAAQDKAEEDVEQALALAPTDALWRRQALKSDYRHLVRLDLVSGQRQPWLSEMQSDLEALAVPPRADGRPLALLNNEQGISVLRLFDPLQAQTPPRRVLTQLPAGVTRNLRWHGTLPLLGFEHASAQSPGRIYAYDSQTEELQLWAGRQEVGSGAEYSSLQWKSFDGLQISGLHIAPPARFQGPRPVYISIHGGPSSQSRPGYLNATLRHLVEVMGMHVILPNVRGSDGFGKKFLGLDNGRRREDSVKDISALLDLIASRSDMDAAKVVVAGGSYGGYMALAVAVHESKRIAGSICRVGIANFVSFLENTESYRRDNRRAEYGDEREPKMREFLQRISPLNRADAVKKPLFIVHGRNDPRVPYAEAQQMVQAVRAHGTPVWFLTAEDEGHSFTKADNRDYLFQATLEFVRRVTAAPPDAAGAKPESDALVKTPVVLAKDD
>NZ_CP013692.1|WP_058721764.1|4896924_4899882_+|TonB-dependent-receptor
MKHRHNLLMLAVISCCGTAFAQDAATPAKIERVEVTGSLIKRIDKETPSVVQTISREDIRKSGYASIEEMLRTVSAVDTSSIGDGAGSGFVSGLSTISLRGFGSQGTLTLVNGRRLAPAAAVDVNFGRGNLVSVNTIPKGAVERIDILKDGASAMYGSDAMAGVVNYILRKDYVGGELGGSYTVNNDGVGGTRSANAAFGLGNLATQRFNIYGGLELSKRDRVMATDLRNQGNPGLADQVLNLDGSLSRFAPSTAASPYANYYRVPASLSGRTTIDGYSVANNSASGVNFLGSLAGCPDEMLVGKGLPQRLPGFLPAGTGTDYGTANMPKGMCRFDLDSATEIISKQDRIGGSMRGTFAVTRDLTAYADVMLSKTTTESLVTPRALTTSLFTQSTAKNAVQWPKLDGTMQSFPAIVLPVGHPDNPTNGRAKPEAVQLLYRFADIQRSDTTELQASRFTVGLEGAVGDWDIDSALLYSRQNMSRVRGNELRASLLSKAIADKTYRFSKANDAAAIASVASDAVIDGKASIASVDLRASRLWFDMAGGKAGVALGAEFRRETLDSVPDNAYQSGDFIGLVANGASGTRNSTALFGELSLPVLKDLEVQAALRAERYSDFGNANTGKLGFKWTAVPSAMLVRGTVATGFRAPSISQIGTSYASSFHSFGSYAVVDPLRCDTSNPAKPISKADPANNRDCNVLGFSSRTPNPGSIATTIAANPDLKPETSKSATLGLVFSPSKAVDLSLDAWYFERQNEIRSQRGVDIMEDAAKNPGAPNPQIVRDPNPTTWLPGVANSGPILMLVRQYGNYNWTKTGGLDYDLTVRFPDTELGRFKLKVDGTYTRRYDYKILASSDVTYAVGTTNSDVPKTKVKATLSWEAGNWDSFARVSHSDGLKRSTTDTCLSSTSASNTLLRDNGYCYNTPQQSLDLGTTYRGFKNLALSATVLNVMGSYGFSSGVPSVFNYYDQGATDQLGRRYTISASYSFD
>NZ_CP013692.1|WP_058721763.1|4895824_4896808_-|LysR-family-transcriptional-regulator
MVISSPPTADPQQAEAFIAKRLSLRHLRLILALTEGKGIGAAAELLHVTQPAVSKSLAELEQGLGQTLFMRRGRGFHATALGERLIALAGKLEADLRRGSEDVASIVRGSHGELQIGATNAALPQLLPDAMALMKLERPLVTISVRTHALTDLIDELRQGRRDLVLARVPPIEMPADIEGQVLLKQNEVVFISCIHPLSKQRQLDWPQLNEQAWVGPLPGTRMRGLMDRMWQALGLAPPSNLIETGDIMLVLSMMKRLPLLAMMPLHVARLAAQQGIVKILPLEAKVGLADLALWHLREPQSELVERFKALLHQVAGDYARRETSQA
>NZ_CP013692.1|WP_058721762.1|4894544_4895834_+|glutamate--cysteine-ligase
MVPHLITALTGPINELEQRVLESMPAIERWFRLEWMEHTPPFYSSVDLRNAGFKLAPVDTNLFPGGFNNLTPEMLPLAVQAAMAAIEKICPEAKNLLLVPENDTGNSFYRSNLATLVRIFTQAGLNVRLGSMDPAVVGPTELAMADGSSLTLEPLLRTRGRLGLKGFDPCTVLLNNDLSAGVPRSIEHLHEQYLLPPLHAGWPTRRKSQHFKAYEEVAKKFSKLLGMDHWLINPVFTPLQSADFSAGAGLEALQTQVDTILNKTRRKYKEYGIQEKPFVVIKPDAGTYGMGVLTVRDAKDLAELGQRKLLGPVGEGAAEHQIIVQEGVVTHERVHDAVAEPVVYMMDRYVVGGFYRVHADRGVDENLNAPGASFVPLAFSQSSQLPRLGEKPGVSAPNRFYMYGVIARLAMLAASYELEVTDPEAEIYA
>NZ_CP013692.1|WP_082680239.1|4893907_4894351_-|response-regulator
MREASQCSAEPSNMPHKILLIEDQAEIRRLVRWSLEESTHTLYEAPNGSLGLAMAQTLRPDLVFLDVMLPGELDGIEVCQRIRADAALASALVVVLSADIRPATKARALAAGANIFLTKPFSPAKLLELTELLLRNRPTESVDPEGI
>NZ_CP013692.1|WP_082680238.1|4891452_4893819_+|AAA-family-ATPase
MSPTAPRGAARQRAAAESSAEFKQDGRVLPSPGLKNAAVLDRMCSQFVLTLTVKHAGKFNLRRDFNGLLSFTGRHLVWPVRVLGRLRDYLKLRCQNNELWSGHEVLSDEDFLLRYGVWTGPFSESTLFFYLDEYVKDAPKDMLALLATTSEWLDRQLKRESTLVETNIDALGNLLQLNPAERALLLYGTLARYQRELRGALVEFKVNTAQEAFATIAAVAGVNAQEVAEALRAGSRLERIGMVENLISEHNITDLADLMKVSDQLPPVLMREYKGPHDLMAVFTRPASKSSLTAADFDFVSDDLGVVGSLLREAVARHDAGVNILLYGPPGTGKTELAKVAAQAAGLDLYEVEYADRDGNSLSGRDRYRSLQISQVFLKASANVALLFDEVEDVFPPLSSDTAQLMARLDSSGEQPANGSVSGKAWVNQILETNPVPVIWVTNRIEQIDPAFRRRFQYHLELKSPPPGARLRLVSTALADVPVAEGFAARLAERRGLTPAQVRTAVRFAQLAGPPEDCERLILRQLENADKALGHASKERGARPMVTQYALDLLNCESRFEIPRIVTALQRRSSGNLCFYGPPGSGKTALAEHIAQSLQKPLMIRQASDLSSKFVGETEQNMARMFEAAASEGAVLLLDEADSFLRSRRMAERNYEVSEVNEMLAGMERFAGIFICTTNLFEDLDEAALRRFAFKIAFKPLRADQRERMFRREALGDDEAALDAEQTARLAALDVLTPGDFAAVRQQVEILGEALTPDEFLSQLEAEHRGKPGVRQRRGIGFAAALKH
>NZ_CP013692.1|WP_058721761.1|4891013_4891307_+|DUF3567-domain-containing-protein
MHMLYNSPSFSVVKFDIQVNEPQMGEFLQANPELQLHRGGYEIVDKFSRKEIFIEGALAQQFQDGVEALIEQDPSEEDLDDFIESFASMGHQPVVMH
>NZ_CP013692.1|WP_058721760.1|4889764_4890820_+|DUF3108-domain-containing-protein
MFARSAFLSALPRRSTRQALAAAVLLSLLAHLALLLPAKRAAAPASAVPSAKALITLQTRAVPPQPAVKRSDGTSTSGFAAKTAAILPSSTQRPPAEPEPGSAKSKPSIAAAPAELADSTALAAAAPARPGSAPPSGEWHYLLRSGEREGQAKLVWHSEAGRYALRLERQLEGRALPSWHSQGTLDGLGLAPQRFTQQRRGRERAAINFRADEGLLSFSASEALLPLEPGTQDRLSWWLQLSALVEADPAFYTAGRSFSLRVAALRGTALDWQFEVLGLVPLAQDDGSSVQALQLRRAPLGPHSGEVQLWLDPARHHLPLRLNFELPDERGWSLRLQPEASSGPASSAAGT
>NZ_CP013692.1|WP_058721767.1|4906283_4907054_-|class-II-glutamine-amidotransferase
MCRFLAYLGESIFLEELVCTPRHSLVRQSLRADEAKAVTNGDGFGIGWYGERSSPGIYREVMPAWSDDNLLALCSNVRSPLFFAHVRAATGTGIARQNCHPFHYGPYLFMHNGQIGGYGQLRRAMESRLSDHLYAHRQGATDSELLFLMIINRMEMGDSITQAVGQVLNETLAMMHVLGIDQPLRFSAALADGKSIHAFRFSSDKRAPTLYLHRHGELGHVIASEPLEGEHEGWELIPQGMVVHLSEEGQRSEALA
>NZ_CP013692.1|WP_058721768.1|4907123_4908302_+|benzoate/H(+)-symporter-BenE-family-transporter
MLAGMTSWLRDLSVSAVVAGFVAVLVGFTSSVAIVFQAAQALGATPAQTSSWMWALGLGMGVTSLGLSLWSRQPVLTAWSTPGAALIAATSGIPMAEAIGAFLVCAALIILFGTTGWFERLMDRIPLAVASALLAGVLARFGLDAVLTVKTAPLLVLSMAAAYLLGKRLWPRYAVPGVLLVGVAVAAGQGRLHWGAVEWAWAQPVWTTPAFSVAALIGVALPLFLVTMASQNLPGVAAQRASGYRAPVSRSITVTGLASLLLAPFGGYAFNLAAITAAICMGPEAHADPRRRYLAACAAGVFYIAVGLAGGAVVGLLVAFPRELVAAIAGLALLGTIAGGLSAALKEEKHRDAAILTFLVTLSGLNLLGIGSAFWGVVAGSVALLVQHLRSR
>NZ_CP013692.1|WP_058721769.1|4908336_4909281_+|glutathione-synthase
MKLLFVADPIETFKTYKDSTFAMMREAAKRGHEIWACEVPDLVWRSGGRVLARRARALTLTGDAKDWYSVAATQELVLAETDAIVMRKDPPFDSEFFYATHLLGQAEREGARVFNKPAALRDHPEKLALMEFPQYCTPTLVTRSAEVVRAFHAEHKDIILKPLDGMGGTGIFRVGADGLNLGAIIETLNKDGAETIMVQRYLPAISQGDKRVLVIGGEVVPFCLARIPQGGEVRGNLAAGGKGVAQPISARDREIAEAVGPILAQRGLLLVGLDVIGDCLTEINVTSPTCFQEITDQTGFDVAKMFVDALERSL
>NZ_CP013692.1|WP_058721770.1|4909325_4911566_+|FUSC-family-protein
MLRQLPLARQLTAAHINGIGVALGVATVQALFSLLLGLPVGLAAAGGAVCASLPDVPNPPQRVLMRVLPAALVAALVSLSVGLLRASPLAMTLLIALIAFASLLSMAWGARAGPLSFTGVLALVFAMAWEAPATPLDALIHAAWVAAGALSYAVWARFMAVLLRRRYRELAVAAAMRAAVRRLRSRAERIRGDVPLAEAGIRASIADDVLLAEALQAARDQVFAAQPSAHSRRQIDLVLGLIELRDLLLASRLDLHLLGEDAAALAWRHALADTLLPLAAVLEELAAHVDRGAPLPEVSPQQSPVLWRADLAARLASVQAPAGDARLHLVDALQSRIGHMFDDIAAMVERCRQPDRASAWTREQLQLFVSPEGWPLAALKPHLSLQSSVMRHALRGGLALSLAYALGLMLPWAAHPHWLVLSVSVVLRGNLEQTLSRRNDRIIGTVIGCLLVLALAQAARLGAGHGILALSFLVAVGVAHAYVNQRYRVAATAATLMALLQPLLLAAGTQPAVGERLADTVIGALLAWAFCFVLPSWERRSLQRLNGQLRLALGRHARNVLQWAPTQAQQLAQRLSRQQAYTALAALAAAAQRTRVEPRSVRLPEPEIEAVLSHGYRLMALLGALQQLLSRRRERLDPTQSPAALQLSLAGLLQALQQPGQPAPGSSKNAGSLAGAADLAAAESSAAAERLSTPLEDEVWPEHLSQQDLSPWLLRRLGLCQREAALLSEAMQRLQTAMPPEPARQG
>NZ_CP013692.1|WP_058722514.1|4911740_4912847_+|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase
MTTRAAVAWKAGAPLTIETVQLDGPRAGEVLVEVKATGICHTDYYTLSGADPEGIFPAILGHEGAGIVLEVGEGVTWLKPGDHVIPLYTPECRQCKFCLSRKTNLCQAIRPTQGKGLMPDGSSRFSIDGKPIFHYMGTSTFANHIVVPGIALAKIREDAPFDKVCYIGCGVTTGVGAVLFTAKVEAGANVVVFGLGGIGLNVIQGAKMVGADKIIGVDLNPEREALARQFGMTHFINPKEHANVVDAIVQLTDGGADYSFECIGNTKVMRDALECTHKGWGRSIIIGVAEAGAEISTRPFQLVTGRKWEGSAFGGARGRTDVPKIVDWYMEGKLKIDELITHKLPLERINEGFDLMKRGESIRSVVEF
>NZ_CP013692.1|WP_058721771.1|4912851_4913697_+|S-formylglutathione-hydrolase
MFELISTHASFGGQQQFCRHESEVIGLPMRFALFVPPAPKGLLIFLAGLTCTEETFTMKAGAQRVAAELGLALLMPDTSPRGAQVPGEAEHWDFGVGAGFYLDATAEPWARHWRMESYITEELLPQVLAALQLPADKVGIFGHSMGGHGALTLALRHPDKFRSVSAFAPIAAPSQCAWGKKAFSGYLGPDTASWDAHDASALMLQAPGAGVLFPAGILIDQGMADKFLLEMQLLPERFEAACQTRGQPVTMRWHLGYDHGYYFIASFVEDHLRHHAKALLG
>NZ_CP013692.1|WP_058721772.1|4913730_4914942_+|MFS-transporter
MKSLDAQQLRRIPASIWVLGFVSLLMDVSSEMIHSLLPLFMVSGLGASALTVGLIEGMAEATALIVKVFSGVLSDYLGRRKGLALLGYGLGALSKPLFALAPGMGLVVTARLIDRVGKGIRGAPRDALVADLTPPQIRGAAFGLRQALDTVGAFLGPLLAVGLMLMWANDFRAVFWLAVIPGALAVLLLLFGVQEPPRSSTAPRVNPIKPANLRRLSADYWWVVGIAALFTLARFSEAFLVLQAQRTGVPMAWVPLVMVAMNLVYALAAYPFGKLSDRLGESKLGLLAGGLVLLIAADLVLARAEHWPMLLCGVALWGVHMAMTQGLLATLVADTAPPDLRGTAYGFFNLLSGLAMLLASAAAGWLWDAHGAPSTFYAGAGFCVLALLVLLAYARRARISAGV
>NZ_CP013692.1|WP_058721773.1|4914925_4915453_-|hypothetical-protein
MHTPSRKPITAPAAIALLAAAGLMAGLVQAAELPSTGLQSCRTLTDAKARLSCYDALADQAAKQPQTPTASTAPLAVAATATTTAAAPVADTFGLTNRPKNEPNVISGQIDGLFEGWGPNQIIYLSNGQAWQVIDGSRAVVYLKNPKVEIRKAAMGSFMLELEGSNETARVKRLR
>NZ_CP013692.1|WP_082680240.1|4915543_4916977_-|cytochrome-P450
MNNTVKTVPEPSTSPTRPALPPGPACRWFGLPQLRAMGRDYLGFLQGVQRQHGDVVYMRLAQFRDYSFFHPDAVRELLVAAHAGLIRWERGTEVMAAAHGHSVLIAEGHAWQRKRQMLLPGFAPKRVTALAPLIVQAGEAALAKWPQAHGDAPVVLNFEHAMTELTMDVILRTTFSCSATPLARAAESALRVLSQEGFREMFYPVSAPLWAPWKRAKRQALRVLNELVEGQIAARRRFLAEGHTGPQDLLGMLLDLRDEQDQALSDKELRDECMTTFLAGHETSAVALTWWAWCMASHPAAAAQASAEVQALLGPEQRAPAFADVAALPYLGQTIKEALRLFPPAPALLTRRCTQALDIGPWHLPKGSMIRLTPGVMHRDPRWFPEPDAFMPERFAADAAHAIPRGAYMPFGAGPRVCLGQHFAMTEITLIAALLLQRFRFSPVPGAEPPRPTLNITLRPHEPLHLRLHRRLDARAD
>NZ_CP013692.1|WP_058721774.1|4916975_4918061_+|helix-turn-helix-transcriptional-regulator
MAAILATRSAPVLNENDIAAVAGRTPTLDATMHAEPADSYSELCADPSAEACLDLDDPLQRPAASLGEPGLHPLTRASLIPPRLSLGSCVRGYMTRDLRAAVDLSPAQRSTWFPVSPVCTITWFLQGQCAEVLCEPGDELAQQERGLRFLPELPFLAGPHSRPTKFRTFGPGHSFVVVLMPDAFKVLTGLDLLQCQDAVLPLHAHLGADWQAMSAAVQAAADDASRVRVFEDFLQPRWQQCRAEGGHDMPRYRDWMEALAVRAIAAGKGRSMRQVERRIKAWSGQSLRQLQSVSRAEQSFFRVREALERGQVVWTDLAYESGYADQAHLCRETRRVTGFSPELLRQRIESHEAFWAYRIWS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP013692_6	6.1\|3971102\|19\|NZ_CP013692\|CRISPRCasFinder	3971102-3971120	19	NZ_CP013692.1	2451588-2451606	2	0.895

1. spacer 6.1|3971102|19|NZ_CP013692|CRISPRCasFinder matches to position: 2451588-2451606, mismatch: 2, identity: 0.895

actcttccttcgaggtttc	CRISPR spacer
actcttccttcgtagtttc	Protospacer
************ .*****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013692_4	4.1\|3086968\|28\|NZ_CP013692\|CRISPRCasFinder	3086968-3086995	28	NZ_CP017941	Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence	464586-464613	6	0.786

1. spacer 4.1|3086968|28|NZ_CP013692|CRISPRCasFinder matches to NZ_CP017941 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

ccttgggtttgagttggaagatcagcca	CRISPR spacer
cgatgagtttgagatggaagatcagcgc	Protospacer
*  **.******* ************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

464253 : 470264

Escherichia_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058718692.1\|464253_465312_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	7.5e-89	50.3
WP_058718693.1\|465323_466211_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.0e-22	35.4
WP_058718694.1\|466308_467199_+	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	6.7e-99	60.3
WP_058718695.1\|467207_467759_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.8e-46	51.7
WP_058718696.1\|467894_469115_-	UDP-N-acetyl-D-mannosamine dehydrogenase	M1HYW7	Paramecium_bursaria_Chlorella_virus	3.5e-21	26.6
WP_058718697.1\|469118_470264_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAI1	Catovirus	2.2e-25	25.1

DBSCAN-SWA_2

486061 : 493784

Prochlorococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058718710.1\|486061_486910_-	NAD-dependent epimerase/dehydratase family protein	Q58M85	Prochlorococcus_phage	1.2e-09	27.5
WP_058718711.1\|486912_487449_-	dTDP-4-dehydrorhamnose 3,5-epimerase	H9NC63	Sphingomonas_phage	2.3e-25	37.1
WP_058718712.1\|487459_488812_-	lipopolysaccharide biosynthesis protein RfbH	A0A0P0YLZ6	Yellowstone_lake_phycodnavirus	3.0e-50	34.2
WP_058718713.1\|488808_489873_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.2e-14	25.2
WP_058718714.1\|489879_490653_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_082679715.1\|490688_491681_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_058718716.1\|491701_492823_-	GDP-mannose 4,6-dehydratase	M1IBC3	Acanthocystis_turfacea_Chlorella_virus	6.7e-136	68.9
WP_058718717.1\|492860_493784_-	GDP-L-fucose synthase	M1HWW2	Paramecium_bursaria_Chlorella_virus	1.8e-94	54.4

DBSCAN-SWA_3

964929 : 993417

Bacillus_phage(25.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058719037.1\|964929_966198_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.6e-131	55.6
WP_058719038.1\|966320_968729_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.4e-223	52.5
WP_058722079.1\|969707_971147_+	hypothetical protein	NA	NA	NA	NA
WP_156421886.1\|971208_972981_+	hypothetical protein	NA	NA	NA	NA
WP_082680291.1\|973294_974911_+	hypothetical protein	A0A2H4J185	uncultured_Caudovirales_phage	1.0e-28	27.4
WP_156421887.1\|975086_976212_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	4.6e-52	40.7
WP_156421888.1\|976205_976841_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_058719044.1\|977419_978289_+	biotin/lipoyl-binding protein	NA	NA	NA	NA
WP_156421889.1\|979044_979200_+	hypothetical protein	NA	NA	NA	NA
WP_058719045.1\|980052_981018_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	1.2e-136	74.5
WP_058719046.1\|981401_981668_-\|transposase	transposase	NA	NA	NA	NA
WP_058719047.1\|982123_983404_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_156421890.1\|983474_983840_+	hypothetical protein	NA	NA	NA	NA
WP_156421891.1\|984413_985580_+	hypothetical protein	NA	NA	NA	NA
WP_156421892.1\|985609_987736_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	5.8e-32	25.3
WP_058719049.1\|987817_988012_-\|transposase	transposase	NA	NA	NA	NA
WP_058718811.1\|989790_990528_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	5.8e-80	62.0
WP_058719050.1\|991890_993417_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.7e-47	36.9

DBSCAN-SWA_4

1298370 : 1340836

Acidithiobacillus_phage(45.16%)

portal,transposase,capsid,tail,head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058719265.1\|1298370_1298634_+	hypothetical protein	K4I3X3	Acidithiobacillus_phage	1.6e-24	65.5
WP_058719266.1\|1298645_1299128_+	hypothetical protein	K4HZ96	Acidithiobacillus_phage	8.2e-51	63.0
WP_058719267.1\|1299124_1299973_+	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	7.3e-111	71.7
WP_024973179.1\|1299978_1300605_+	hypothetical protein	K4ICM8	Acidithiobacillus_phage	4.5e-73	67.5
WP_058719268.1\|1300615_1301470_+	hypothetical protein	A0A0S2SYC0	Pseudomonas_phage	2.6e-23	43.1
WP_058719269.1\|1301466_1301967_+	hypothetical protein	K4I3X7	Acidithiobacillus_phage	7.0e-69	73.6
WP_058719270.1\|1301963_1302701_+	hypothetical protein	K4HZA0	Acidithiobacillus_phage	1.2e-109	76.6
WP_045535108.1\|1302697_1302952_+	hypothetical protein	K4I1D6	Acidithiobacillus_phage	6.7e-20	68.1
WP_058719271.1\|1302948_1305240_+	hypothetical protein	K4HZY1	Acidithiobacillus_phage	9.3e-286	63.1
WP_058722118.1\|1305368_1305833_+	hypothetical protein	K4ICN3	Acidithiobacillus_phage	1.5e-57	71.1
WP_058719272.1\|1305834_1306044_+	hypothetical protein	NA	NA	NA	NA
WP_058719273.1\|1306036_1306453_+	hypothetical protein	NA	NA	NA	NA
WP_058722119.1\|1306768_1308178_+	site-specific DNA-methyltransferase	K4I3Y2	Acidithiobacillus_phage	1.2e-161	60.0
WP_058719274.1\|1308174_1309446_+	site-specific DNA-methyltransferase	A0A2H4JGF1	uncultured_Caudovirales_phage	3.8e-228	92.2
WP_058719275.1\|1309409_1309778_-	hypothetical protein	A0A2H4JI44	uncultured_Caudovirales_phage	2.4e-58	87.5
WP_058719276.1\|1309876_1310236_-	hypothetical protein	NA	NA	NA	NA
WP_058719277.1\|1310265_1310790_-	DUF3489 domain-containing protein	A0A2H4JE21	uncultured_Caudovirales_phage	3.3e-37	81.1
WP_058719278.1\|1310888_1311086_-	hypothetical protein	NA	NA	NA	NA
WP_058719279.1\|1311203_1311743_+	hypothetical protein	A0A2H4JCL4	uncultured_Caudovirales_phage	4.4e-85	92.7
WP_058722120.1\|1311745_1313710_+\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	0.0e+00	88.7
WP_058719280.1\|1313727_1314219_+	hypothetical protein	A0A0F6WCR7	Sinorhizobium_phage	7.2e-26	49.1
WP_058719281.1\|1314218_1314611_+	hypothetical protein	NA	NA	NA	NA
WP_058719282.1\|1314610_1314832_+	hypothetical protein	A0A2H4JCJ9	uncultured_Caudovirales_phage	8.2e-14	61.6
WP_058719283.1\|1314831_1316343_+\|portal	phage portal protein	A0A1B2LRR5	Wolbachia_phage	2.6e-151	56.1
WP_058719284.1\|1316352_1317582_+	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	1.2e-64	43.2
WP_058719285.1\|1317583_1317964_+\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	1.6e-25	48.4
WP_058719286.1\|1317981_1319001_+\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	7.7e-131	66.8
WP_058719287.1\|1318997_1319300_+	hypothetical protein	NA	NA	NA	NA
WP_058719288.1\|1319304_1319751_+	hypothetical protein	NA	NA	NA	NA
WP_058719289.1\|1319756_1319951_+	hypothetical protein	NA	NA	NA	NA
WP_058719290.1\|1319947_1320700_+	hypothetical protein	A0A2D2W2E0	Stenotrophomonas_phage	8.6e-47	44.2
WP_058719291.1\|1320711_1321113_+	hypothetical protein	NA	NA	NA	NA
WP_058719292.1\|1321109_1321313_+	hypothetical protein	NA	NA	NA	NA
WP_058719293.1\|1321318_1321963_+	hypothetical protein	NA	NA	NA	NA
WP_058719294.1\|1321966_1326010_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	3.2e-31	29.5
WP_058719295.1\|1326020_1326428_+	hypothetical protein	A0A0M4UTA7	Ralstonia_phage	8.8e-30	50.0
WP_058719296.1\|1326429_1329993_+	hypothetical protein	A0A0M4U447	Ralstonia_phage	1.4e-235	40.6
WP_058719297.1\|1330016_1331288_+	hypothetical protein	NA	NA	NA	NA
WP_058719298.1\|1331291_1332377_+	hypothetical protein	NA	NA	NA	NA
WP_058719299.1\|1332373_1332769_+	hypothetical protein	Q6VSZ7	Vibrio_phage	7.8e-07	33.6
WP_058719300.1\|1332772_1334791_+	hypothetical protein	A0A0M4UKC5	Ralstonia_phage	2.1e-55	37.2
WP_058719301.1\|1334783_1335005_+	hypothetical protein	NA	NA	NA	NA
WP_058719302.1\|1335081_1335384_+	hypothetical protein	K4I011	Acidithiobacillus_phage	2.6e-26	65.3
WP_058719303.1\|1335380_1335857_+	hypothetical protein	K4ICR8	Acidithiobacillus_phage	4.7e-75	89.1
WP_058719304.1\|1335853_1336318_+	lysozyme	K4I410	Acidithiobacillus_phage	5.1e-66	78.2
WP_058719305.1\|1336325_1337087_-	hypothetical protein	NA	NA	NA	NA
WP_156421911.1\|1338980_1339670_-	hypothetical protein	NA	NA	NA	NA
WP_058719307.1\|1339885_1340836_+\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1372806 : 1380011

Acidithiobacillus_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058719329.1\|1372806_1374165_-	recombinase family protein	K4ICM1	Acidithiobacillus_phage	2.2e-133	56.8
WP_082679821.1\|1374161_1374518_-	DUF2924 domain-containing protein	K4I3X1	Acidithiobacillus_phage	3.3e-12	38.7
WP_058719330.1\|1374577_1375525_+	hypothetical protein	A0A0B5A5I4	Achromobacter_phage	8.9e-49	36.1
WP_058719331.1\|1375612_1376059_+	hypothetical protein	A0A0B5A4F6	Achromobacter_phage	9.4e-09	41.7
WP_058719332.1\|1376064_1376892_+	hypothetical protein	NA	NA	NA	NA
WP_156421912.1\|1377217_1377589_+	hypothetical protein	NA	NA	NA	NA
WP_058718811.1\|1377699_1378437_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	5.8e-80	62.0
WP_058718810.1\|1378460_1380011_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.8e-158	57.1

DBSCAN-SWA_6

1493846 : 1501792

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058719416.1\|1493846_1494596_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.9e-62	51.0
WP_058719417.1\|1494592_1495411_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	9.4e-31	42.8
WP_058719418.1\|1495568_1496453_+	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_156421919.1\|1496479_1497523_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	3.1e-26	31.6
WP_058719419.1\|1497544_1498942_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	6.8e-29	26.2
WP_058719420.1\|1499101_1499797_-	Bax inhibitor-1/YccA family protein	A2VCJ8	Vaccinia_virus	2.7e-10	30.3
WP_058719421.1\|1499955_1500360_+	heme-binding protein	NA	NA	NA	NA
WP_058722138.1\|1500631_1501792_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	3.2e-48	33.4

DBSCAN-SWA_7

1581517 : 1589142

Staphylococcus_phage(33.33%)

integrase,transposase

attL 1578204:1578219|attR 1589165:1589180

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1578204:1578219	attL	NA	NA	NA	NA
WP_156421925.1\|1581517_1582712_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.1e-56	39.0
WP_156421926.1\|1582776_1583130_+	hypothetical protein	NA	NA	NA	NA
WP_156421927.1\|1583144_1583315_+	hypothetical protein	NA	NA	NA	NA
WP_082679842.1\|1583333_1583687_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4J6I5	uncultured_Caudovirales_phage	2.9e-05	41.7
WP_156421896.1\|1583711_1584838_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	6.0e-52	40.7
WP_058719495.1\|1584903_1586004_-	hypothetical protein	I6X828	Pseudomonas_phage	2.2e-27	34.1
WP_058719496.1\|1586187_1586544_-	hypothetical protein	NA	NA	NA	NA
WP_058719497.1\|1587003_1587510_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_058719498.1\|1587506_1587977_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.0e-18	37.4
WP_058719499.1\|1588005_1589142_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.8e-48	36.5
1589165:1589180	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1801735 : 1819855

Leptospira_phage(50.0%)

integrase,protease,transposase

attL 1803579:1803597|attR 1826226:1826244

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082679864.1\|1801735_1802020_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_058719654.1\|1802523_1803813_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
1803579:1803597	attL	NA	NA	NA	NA
WP_156421942.1\|1803907_1804084_+	hypothetical protein	NA	NA	NA	NA
WP_156421943.1\|1804117_1804984_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_082679866.1\|1805012_1805516_+	hypothetical protein	NA	NA	NA	NA
WP_156421944.1\|1805508_1806635_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	4.6e-52	40.7
WP_082679867.1\|1806570_1808391_+	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	2.7e-33	26.1
WP_082680311.1\|1808860_1811149_+	hypothetical protein	NA	NA	NA	NA
WP_058719659.1\|1811388_1812879_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_058719660.1\|1812875_1814057_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_058719661.1\|1814449_1816405_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_058719662.1\|1816401_1817073_+	response regulator transcription factor	NA	NA	NA	NA
WP_156421945.1\|1817280_1817523_+	hypothetical protein	NA	NA	NA	NA
WP_058719664.1\|1817572_1818571_-	DNA-binding protein	NA	NA	NA	NA
WP_082680312.1\|1818766_1819855_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
1826226:1826244	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2158127 : 2214626

Acidithiobacillus_phage(28.57%)

integrase,protease,transposase,tRNA

attL 2197051:2197071|attR 2220207:2220227

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058719888.1\|2158127_2159672_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	4.2e-157	56.1
WP_058719889.1\|2159775_2160513_+	AAA family ATPase	K4HZD4	Acidithiobacillus_phage	2.9e-79	62.1
WP_082680320.1\|2160579_2161767_-	PLP-dependent aminotransferase family protein	A0A1X9I5H2	Streptococcus_phage	7.3e-08	24.3
WP_058719891.1\|2162918_2163455_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_058722204.1\|2163553_2164003_+	DUF393 domain-containing protein	NA	NA	NA	NA
WP_058719892.1\|2164034_2164931_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_058719893.1\|2164927_2165320_+	hypothetical protein	NA	NA	NA	NA
WP_058719894.1\|2165316_2165829_+	DUF2269 domain-containing protein	NA	NA	NA	NA
WP_058722205.1\|2165818_2167147_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA
WP_058719895.1\|2167146_2168187_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA
WP_156421964.1\|2169666_2169978_-	hypothetical protein	NA	NA	NA	NA
WP_082679914.1\|2170154_2171084_-	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
WP_058719898.1\|2171196_2172060_-	DNA ligase	A0A1X9VNY8	Mimivirus	3.7e-25	32.8
WP_058719899.1\|2172130_2173573_-	exodeoxyribonuclease I	NA	NA	NA	NA
WP_082680321.1\|2173724_2176037_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_156421965.1\|2176054_2177080_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_058719901.1\|2177084_2178206_-	beta-ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_058719902.1\|2178448_2179426_+	GMP reductase	Q4ZCY7	Staphylococcus_virus	2.4e-121	64.8
WP_058719903.1\|2179606_2180662_-	alkene reductase	NA	NA	NA	NA
WP_058719904.1\|2181018_2183880_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	4.5e-136	37.2
WP_082679915.1\|2183818_2184823_-	phosphoglycerate dehydrogenase	NA	NA	NA	NA
WP_058719905.1\|2184963_2185863_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.7e-70	50.7
WP_058719906.1\|2185991_2186219_-	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_058719907.1\|2186287_2186824_-	NUDIX hydrolase	NA	NA	NA	NA
WP_058719908.1\|2186826_2187750_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	2.2e-52	39.0
WP_058719909.1\|2188194_2188776_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_156421966.1\|2188814_2189747_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_058722206.1\|2189853_2190891_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_058719911.1\|2190931_2191669_+	2OG-Fe dioxygenase family protein	NA	NA	NA	NA
WP_082679916.1\|2191780_2192887_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA
WP_156421967.1\|2192977_2193706_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	8.4e-15	28.8
WP_058719522.1\|2193714_2194512_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.8e-16	26.7
WP_058719913.1\|2194508_2195594_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_058722208.1\|2195617_2196541_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
2197051:2197071	attL	NA	NA	NA	NA
WP_058719914.1\|2198001_2199282_+\|integrase	site-specific integrase	Q19US1	Mannheimia_phage	5.8e-11	27.0
WP_058719915.1\|2199445_2199922_+	hypothetical protein	NA	NA	NA	NA
WP_082679917.1\|2200652_2201672_+	hypothetical protein	NA	NA	NA	NA
WP_156421968.1\|2201876_2202314_-	hypothetical protein	NA	NA	NA	NA
WP_156421969.1\|2202324_2202648_-	hypothetical protein	NA	NA	NA	NA
WP_058719919.1\|2202777_2203143_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_156421970.1\|2203304_2203883_-	hypothetical protein	NA	NA	NA	NA
WP_156421971.1\|2204210_2204546_+	hypothetical protein	NA	NA	NA	NA
WP_058719922.1\|2204680_2205520_+	site-specific DNA-methyltransferase	A0A2I7RE86	Vibrio_phage	2.0e-15	29.2
WP_082679918.1\|2205531_2205888_+	hypothetical protein	NA	NA	NA	NA
WP_156421972.1\|2205915_2206164_-	hypothetical protein	NA	NA	NA	NA
WP_058719923.1\|2206274_2206637_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_082679919.1\|2206716_2208603_-	ATP-binding protein	NA	NA	NA	NA
WP_156421973.1\|2208774_2208927_-	hypothetical protein	NA	NA	NA	NA
WP_156421974.1\|2208926_2209241_-	hypothetical protein	NA	NA	NA	NA
WP_082679920.1\|2209642_2210128_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_156421975.1\|2210124_2210778_+	hypothetical protein	NA	NA	NA	NA
WP_058718810.1\|2211508_2213059_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.8e-158	57.1
WP_058718811.1\|2213082_2213820_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	5.8e-80	62.0
WP_082679921.1\|2213892_2214318_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_156421976.1\|2214350_2214626_-\|transposase	transposase	NA	NA	NA	NA
2220207:2220227	attR	NA	NA	NA	NA

DBSCAN-SWA_10

2822602 : 2875982

Acidithiobacillus_phage(20.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058720341.1\|2822602_2823553_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_058720342.1\|2823791_2824628_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_058720343.1\|2824779_2825136_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_082680341.1\|2825455_2826736_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_058720345.1\|2827207_2828764_+	cytochrome d terminal oxidase subunit 1	NA	NA	NA	NA
WP_058720346.1\|2828774_2829917_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_156422219.1\|2830018_2830606_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA
WP_082679994.1\|2830621_2830747_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA
WP_156422008.1\|2830837_2831248_+	hypothetical protein	NA	NA	NA	NA
WP_156422009.1\|2832704_2834249_+	hypothetical protein	NA	NA	NA	NA
WP_156422010.1\|2834226_2835352_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.5e-52	41.1
WP_058719889.1\|2835587_2836325_-	AAA family ATPase	K4HZD4	Acidithiobacillus_phage	2.9e-79	62.1
WP_058719888.1\|2836428_2837973_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	4.2e-157	56.1
WP_156421925.1\|2838467_2839663_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.1e-56	39.0
WP_058720354.1\|2840132_2840420_-	hypothetical protein	NA	NA	NA	NA
WP_058720355.1\|2840464_2841913_-	replicative DNA helicase	O80281	Escherichia_phage	7.8e-121	50.6
WP_058720356.1\|2842158_2842614_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_058720357.1\|2842627_2842918_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_058720358.1\|2842962_2843271_-	primosomal replication protein N	NA	NA	NA	NA
WP_058720359.1\|2843305_2843668_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_058720360.1\|2843838_2845941_-	cation acetate symporter	NA	NA	NA	NA
WP_058720361.1\|2846066_2848475_-	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	1.3e-160	35.7
WP_058720362.1\|2848799_2849621_+	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_058720363.1\|2849622_2850498_+	EamA family transporter	NA	NA	NA	NA
WP_058720364.1\|2850500_2851274_-	RNA methyltransferase	NA	NA	NA	NA
WP_058720365.1\|2851274_2851907_-	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	5.6e-23	38.4
WP_058720366.1\|2851872_2853039_-	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_058720367.1\|2853046_2853829_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_058722291.1\|2853843_2854287_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_058722292.1\|2854289_2855360_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_058720368.1\|2855368_2855890_-	OmpH family outer membrane protein	NA	NA	NA	NA
WP_058720369.1\|2855889_2858205_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_058720370.1\|2858213_2859581_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_058720371.1\|2859577_2860777_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_058720372.1\|2860773_2861634_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_156422220.1\|2861653_2862364_-	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	3.1e-14	31.9
WP_058720374.1\|2862400_2862961_-	ribosome recycling factor	NA	NA	NA	NA
WP_058720375.1\|2863005_2863716_-	UMP kinase	NA	NA	NA	NA
WP_058720376.1\|2863857_2864748_-	elongation factor Ts	NA	NA	NA	NA
WP_058720377.1\|2864873_2865620_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_058720378.1\|2865940_2867248_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_058722293.1\|2867339_2868818_+	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_058720379.1\|2868941_2871272_-	ribonuclease R	Q0GXV6	Lactococcus_phage	1.7e-69	34.2
WP_058720380.1\|2871706_2872228_-	phosphoribosyltransferase	NA	NA	NA	NA
WP_058722294.1\|2872263_2873607_-	adenylosuccinate synthase	W5S5V7	Pithovirus	2.7e-67	35.2
WP_058720381.1\|2873659_2874823_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA
WP_082680343.1\|2874876_2875032_-	DUF2065 domain-containing protein	NA	NA	NA	NA
WP_058720383.1\|2875082_2875982_-\|protease	protease modulator HflC	NA	NA	NA	NA

DBSCAN-SWA_11

2938296 : 3015720

Acidithiobacillus_phage(41.67%)

integrase,transposase,tRNA

attL 2938188:2938214|attR 2984337:2984363

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2938188:2938214	attL	NA	NA	NA	NA
WP_156422013.1\|2938296_2940318_+\|integrase	integrase	NA	NA	NA	NA
WP_058722306.1\|2940347_2940593_-	type II toxin-antitoxin system CcdA family antitoxin	NA	NA	NA	NA
WP_156422014.1\|2941291_2941435_+	hypothetical protein	NA	NA	NA	NA
WP_058720422.1\|2941715_2944949_-	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	1.2e-60	27.3
WP_058722307.1\|2945104_2946181_-	Fic family protein	D7RWK9	Brochothrix_phage	1.5e-20	26.6
WP_058720423.1\|2946356_2951144_-	DUF3320 domain-containing protein	NA	NA	NA	NA
WP_058720424.1\|2951269_2952511_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_058720425.1\|2952500_2954072_-	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	3.5e-50	32.0
WP_156422015.1\|2954776_2955553_-	hypothetical protein	NA	NA	NA	NA
WP_082680346.1\|2956702_2957851_-	DUF3466 family protein	NA	NA	NA	NA
WP_156422016.1\|2958597_2960040_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_156422017.1\|2960443_2960812_+	hypothetical protein	NA	NA	NA	NA
WP_156421925.1\|2960946_2962141_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.1e-56	39.0
WP_058720430.1\|2962315_2963179_+	hypothetical protein	NA	NA	NA	NA
WP_058719889.1\|2964999_2965737_-	AAA family ATPase	K4HZD4	Acidithiobacillus_phage	2.9e-79	62.1
WP_058719888.1\|2965840_2967385_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	4.2e-157	56.1
WP_058720432.1\|2968287_2968620_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_058720433.1\|2968616_2968970_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_082680347.1\|2969389_2969872_+	50S ribosomal protein L6	NA	NA	NA	NA
WP_058720435.1\|2970989_2971550_-	DUF4268 domain-containing protein	NA	NA	NA	NA
WP_082680001.1\|2971657_2971843_-	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_058720436.1\|2972171_2972582_-	hypothetical protein	NA	NA	NA	NA
WP_156422018.1\|2973695_2974028_+	hypothetical protein	NA	NA	NA	NA
WP_058720438.1\|2974752_2975262_+	hypothetical protein	NA	NA	NA	NA
WP_058720439.1\|2975840_2976215_-	hypothetical protein	NA	NA	NA	NA
WP_058718811.1\|2976411_2977149_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	5.8e-80	62.0
WP_058718810.1\|2977172_2978723_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.8e-158	57.1
WP_156422019.1\|2978762_2979878_-	hypothetical protein	NA	NA	NA	NA
WP_058720441.1\|2981263_2982157_-	HNH endonuclease	NA	NA	NA	NA
WP_156422020.1\|2982193_2982925_-	hypothetical protein	NA	NA	NA	NA
WP_156422021.1\|2983497_2983764_+	hypothetical protein	NA	NA	NA	NA
WP_058720443.1\|2984712_2984958_+	hypothetical protein	NA	NA	NA	NA
2984337:2984363	attR	NA	NA	NA	NA
WP_082680003.1\|2985153_2986944_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_058720445.1\|2987465_2990744_+	TonB-dependent receptor	NA	NA	NA	NA
WP_058722308.1\|2991009_2992542_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_058720446.1\|2992662_2994150_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_058720447.1\|2994344_2996999_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.1e-80	40.4
WP_058720448.1\|2997082_2997793_+	UPF0149 family protein	NA	NA	NA	NA
WP_058720449.1\|2997914_2998406_-	SET domain-containing protein	NA	NA	NA	NA
WP_058720450.1\|2998717_2999245_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_058720451.1\|2999353_2999614_-	hypothetical protein	NA	NA	NA	NA
WP_058720452.1\|2999847_3000339_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_058720453.1\|3000335_3000932_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_058720454.1\|3001099_3001702_+	DUF2975 domain-containing protein	NA	NA	NA	NA
WP_058720455.1\|3001701_3001956_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_156422022.1\|3001945_3002623_+	hypothetical protein	NA	NA	NA	NA
WP_156422023.1\|3002683_3003520_+	DUF2987 domain-containing protein	NA	NA	NA	NA
WP_058720458.1\|3003568_3004057_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_058720459.1\|3004166_3005135_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_058722309.1\|3005139_3005448_-	DUF4212 domain-containing protein	NA	NA	NA	NA
WP_156422024.1\|3005618_3006722_+	peptide chain release factor 2	NA	NA	NA	NA
WP_058722311.1\|3006808_3009502_+	aminopeptidase N	NA	NA	NA	NA
WP_058720460.1\|3009506_3010520_+	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	4.4e-46	35.3
WP_058720462.1\|3011424_3012063_+	hypothetical protein	NA	NA	NA	NA
WP_082680004.1\|3012526_3014140_+	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	2.3e-97	40.1
WP_058720463.1\|3014136_3014607_+	hypothetical protein	NA	NA	NA	NA
WP_156421976.1\|3014575_3014851_+\|transposase	transposase	NA	NA	NA	NA
WP_082680005.1\|3014883_3015720_+\|transposase	IS3 family transposase	K4HZD4	Acidithiobacillus_phage	1.8e-32	69.1

DBSCAN-SWA_12

3127449 : 3138842

Escherichia_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058720538.1\|3127449_3128475_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	4.7e-72	43.7
WP_156422031.1\|3128505_3129951_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	3.3e-47	28.7
WP_058720539.1\|3130084_3131365_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA
WP_058720540.1\|3131385_3132444_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	7.5e-89	50.3
WP_058720541.1\|3132455_3133337_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	3.3e-21	32.1
WP_058720542.1\|3133409_3134300_+	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	4.4e-98	59.9
WP_058720543.1\|3134308_3134860_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.7e-47	51.6
WP_058720544.1\|3134934_3136272_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	4.9e-77	40.2
WP_058720545.1\|3136353_3137361_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	9.2e-28	26.8
WP_058720546.1\|3137735_3138842_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A0N9R0B2	Chrysochromulina_ericina_virus	5.5e-58	38.0

DBSCAN-SWA_13

4200150 : 4245265

Catovirus(11.11%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058721271.1\|4200150_4201464_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_058721272.1\|4201711_4203406_+	AMP-binding protein	A0A1V0SBX8	Catovirus	9.1e-36	25.3
WP_058721273.1\|4203478_4204609_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_156422096.1\|4204765_4205188_+	hypothetical protein	NA	NA	NA	NA
WP_058721275.1\|4205262_4207851_-\|protease	zinc-dependent metalloprotease	NA	NA	NA	NA
WP_058721276.1\|4208116_4208785_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_058722441.1\|4208947_4209595_+	LysE family translocator	NA	NA	NA	NA
WP_058721277.1\|4209594_4210137_+	DUF2939 domain-containing protein	NA	NA	NA	NA
WP_058721278.1\|4210133_4211675_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_058721279.1\|4211840_4213103_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_058721280.1\|4213225_4214716_+	diguanylate cyclase	NA	NA	NA	NA
WP_058721281.1\|4214738_4215281_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.3e-30	43.8
WP_156422097.1\|4215576_4215810_+	DUF2805 domain-containing protein	NA	NA	NA	NA
WP_058721283.1\|4215854_4216958_+	hypothetical protein	NA	NA	NA	NA
WP_058722442.1\|4217173_4218565_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_082680146.1\|4219111_4219750_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_082680147.1\|4219659_4222434_+	serine/threonine protein kinase	A0A2P1EMR8	Moumouvirus	5.0e-15	29.0
WP_156422098.1\|4222575_4223523_+	hypothetical protein	NA	NA	NA	NA
WP_058721289.1\|4223688_4225413_-	membrane protein insertase YidC	NA	NA	NA	NA
WP_082680148.1\|4225409_4225742_-	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
WP_082680372.1\|4225760_4226231_-	hypothetical protein	NA	NA	NA	NA
WP_054021782.1\|4226251_4226386_-	50S ribosomal protein L34	NA	NA	NA	NA
WP_156422243.1\|4226879_4228367_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA
WP_058721292.1\|4228491_4229613_+	DNA polymerase III subunit beta	R9TRR6	Rhizobium_phage	1.2e-44	33.0
WP_082680150.1\|4229724_4232319_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	8.8e-115	35.1
WP_058722445.1\|4232816_4234346_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_082680151.1\|4234335_4235055_+	AAA family ATPase	U5N3V8	Enterobacteria_phage	3.1e-17	35.1
WP_156422099.1\|4234996_4236192_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.6e-57	39.0
WP_058719050.1\|4236647_4238174_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.7e-47	36.9
WP_156422100.1\|4239709_4240165_+	hypothetical protein	NA	NA	NA	NA
WP_058718810.1\|4240204_4241755_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.8e-158	57.1
WP_156422101.1\|4243012_4243195_+	hypothetical protein	NA	NA	NA	NA
WP_082680154.1\|4243510_4244362_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_082680155.1\|4244575_4245265_-\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_14

4510394 : 4586668

Acinetobacter_phage(22.22%)

integrase,transposase,tRNA

attL 4512279:4512295|attR 4555999:4556015

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058721493.1\|4510394_4511438_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_058721494.1\|4511473_4512661_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
4512279:4512295	attL	NA	NA	NA	NA
WP_058721495.1\|4512754_4513636_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_156422120.1\|4513651_4514035_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_058721497.1\|4514212_4515487_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_058721498.1\|4515495_4516725_+	hypothetical protein	NA	NA	NA	NA
WP_058722479.1\|4516739_4517270_-	class IV adenylate cyclase	NA	NA	NA	NA
WP_082680380.1\|4517317_4518268_-	DMT family transporter	NA	NA	NA	NA
WP_058721499.1\|4518462_4518921_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_058721500.1\|4518938_4519769_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA
WP_058721501.1\|4519761_4522632_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	2.8e-37	25.2
WP_058721502.1\|4522840_4524319_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
WP_058721503.1\|4524523_4524967_+	hypothetical protein	NA	NA	NA	NA
WP_058721504.1\|4524957_4526040_-	LD-carboxypeptidase	NA	NA	NA	NA
WP_058721505.1\|4526150_4526771_-	D-alanyl-D-alanine dipeptidase	NA	NA	NA	NA
WP_058721506.1\|4526767_4527670_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_082680192.1\|4527704_4529318_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_058721507.1\|4529594_4530395_+	hypothetical protein	NA	NA	NA	NA
WP_058721508.1\|4530442_4531372_-	agmatinase	NA	NA	NA	NA
WP_156421925.1\|4532169_4533365_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.1e-56	39.0
WP_058721509.1\|4533755_4535216_-	hypothetical protein	NA	NA	NA	NA
WP_058721510.1\|4535335_4535722_+	MAPEG family protein	NA	NA	NA	NA
WP_058721511.1\|4535785_4536754_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-17	30.3
WP_058721512.1\|4536746_4537718_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	3.1e-12	31.1
WP_058721513.1\|4537721_4538639_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_058721514.1\|4538808_4539816_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_058721515.1\|4539838_4540711_-	N-acetylmuramoyl-L-alanine amidase	A0A076YN96	Rhizobium_phage	7.5e-10	25.0
WP_058721516.1\|4540865_4541453_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	7.0e-20	43.0
WP_058721517.1\|4541495_4542311_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_058721518.1\|4542470_4543607_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.7e-84	45.2
WP_058721519.1\|4543679_4544168_+	hypothetical protein	NA	NA	NA	NA
WP_156422121.1\|4544171_4544822_-	hypothetical protein	NA	NA	NA	NA
WP_156422122.1\|4545047_4546385_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_156422123.1\|4546501_4548397_+	hypothetical protein	NA	NA	NA	NA
WP_058721523.1\|4548400_4550440_+	hypothetical protein	NA	NA	NA	NA
WP_058721524.1\|4550439_4550907_+	hypothetical protein	NA	NA	NA	NA
WP_058721526.1\|4551494_4552088_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_082680193.1\|4551969_4552389_-	hypothetical protein	NA	NA	NA	NA
WP_058721527.1\|4552561_4554265_-	flotillin	NA	NA	NA	NA
WP_058721528.1\|4554300_4554933_-	YqiJ family protein	NA	NA	NA	NA
WP_058721529.1\|4554929_4555616_-	hypothetical protein	NA	NA	NA	NA
WP_058721530.1\|4555617_4556139_-	hypothetical protein	NA	NA	NA	NA
4555999:4556015	attR	NA	NA	NA	NA
WP_058721531.1\|4556274_4556721_-	hypothetical protein	NA	NA	NA	NA
WP_082680194.1\|4556717_4557215_-	hypothetical protein	NA	NA	NA	NA
WP_058721533.1\|4557213_4558245_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_058721534.1\|4558291_4558579_-	hypothetical protein	NA	NA	NA	NA
WP_058721535.1\|4558717_4559056_-	hypothetical protein	NA	NA	NA	NA
WP_156422124.1\|4559052_4578249_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_082680195.1\|4578276_4580139_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_058722482.1\|4581269_4581983_+	hypothetical protein	NA	NA	NA	NA
WP_156422125.1\|4582290_4583151_+	hypothetical protein	NA	NA	NA	NA
WP_156422126.1\|4583161_4583743_+	hypothetical protein	S5FXQ0	Shigella_phage	1.1e-17	36.0
WP_156422127.1\|4583820_4583988_-	hypothetical protein	NA	NA	NA	NA
WP_156422128.1\|4584677_4585765_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.0e-45	37.4
WP_082680197.1\|4585709_4586360_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_156421976.1\|4586392_4586668_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_15

4822722 : 4846636

Rhodococcus_phage(50.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058721715.1\|4822722_4823610_+\|protease	metalloprotease	A0A1I9SA48	Rhodococcus_phage	3.2e-32	40.6
WP_058721716.1\|4823799_4824405_+	hypothetical protein	NA	NA	NA	NA
WP_058721717.1\|4824487_4824727_+	HPr-rel-A system PqqD family peptide chaperone	NA	NA	NA	NA
WP_058721718.1\|4824723_4825647_+	HprK-related kinase A	NA	NA	NA	NA
WP_058721719.1\|4825643_4826747_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_058721720.1\|4826802_4827423_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_058721721.1\|4827463_4827748_-	DUF2917 domain-containing protein	NA	NA	NA	NA
WP_058721722.1\|4827901_4829356_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_058721723.1\|4829316_4830303_-	DMT family transporter	NA	NA	NA	NA
WP_058721724.1\|4830679_4830964_-	hypothetical protein	NA	NA	NA	NA
WP_058721725.1\|4831000_4832263_-	glycolate oxidase subunit GlcF	NA	NA	NA	NA
WP_156422254.1\|4832262_4832922_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_058721727.1\|4832947_4834045_-	glycolate oxidase subunit GlcE	NA	NA	NA	NA
WP_058722508.1\|4834048_4835524_-	FAD-binding protein	NA	NA	NA	NA
WP_058721728.1\|4835586_4836351_-	hypothetical protein	NA	NA	NA	NA
WP_058721729.1\|4836378_4837359_-	TraB/GumN family protein	NA	NA	NA	NA
WP_058721730.1\|4837355_4837859_-\|protease	TIGR02281 family clan AA aspartic protease	NA	NA	NA	NA
WP_058721731.1\|4838054_4839608_-	ammonium transporter	NA	NA	NA	NA
WP_058721732.1\|4839681_4840020_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_058721733.1\|4840071_4840839_-	hypothetical protein	NA	NA	NA	NA
WP_156422154.1\|4841523_4842387_+	hypothetical protein	NA	NA	NA	NA
WP_058719059.1\|4842423_4843455_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_156422155.1\|4843547_4844150_+	hypothetical protein	NA	NA	NA	NA
WP_156421896.1\|4844186_4845312_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	6.0e-52	40.7
WP_082680226.1\|4845371_4845605_+\|transposase	transposase	NA	NA	NA	NA
WP_156422156.1\|4845653_4846004_-	hypothetical protein	NA	NA	NA	NA
WP_082680227.1\|4846255_4846636_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_16

4860822 : 4877814

Acidithiobacillus_phage(57.14%)

integrase,transposase

attL 4873590:4873605|attR 4878961:4878976

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_156421896.1\|4860822_4861949_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	6.0e-52	40.7
WP_156422159.1\|4861969_4862140_+	hypothetical protein	NA	NA	NA	NA
WP_058721749.1\|4862270_4863716_-	S8 family peptidase	NA	NA	NA	NA
WP_058718810.1\|4863861_4865412_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.8e-158	57.1
WP_058718811.1\|4865435_4866173_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	5.8e-80	62.0
WP_156422160.1\|4866306_4867470_-	S8 family serine peptidase	NA	NA	NA	NA
WP_058721751.1\|4867524_4868508_-	ATP-binding protein	A0A2K9R7H3	Dishui_lake_phycodnavirus	1.0e-10	31.2
WP_156422099.1\|4869335_4870530_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.6e-57	39.0
WP_058719888.1\|4871199_4872744_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	4.2e-157	56.1
WP_058719889.1\|4872847_4873585_+	AAA family ATPase	K4HZD4	Acidithiobacillus_phage	2.9e-79	62.1
WP_156422161.1\|4873544_4873895_-	hypothetical protein	NA	NA	NA	NA
4873590:4873605	attL	NA	NA	NA	NA
WP_058721752.1\|4873897_4874788_-	AAA family ATPase	NA	NA	NA	NA
WP_058721753.1\|4874784_4876743_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_058719307.1\|4876863_4877814_+\|transposase	IS481 family transposase	NA	NA	NA	NA
4878961:4878976	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013692

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection