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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011914 Eubacterium limosum strain SA11 chromosome, complete genome 5 crisprs cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,c2c10_CAS-V-U3,WYL,csa3,DEDDh,csx1,DinG 0 4 6 0

Results visualization

1. NZ_CP011914
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011914_1 170076-172404 TypeI-B II-B
35 spacers
cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011914_2 414389-416064 Orphan II-B
25 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011914_3 432106-432185 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011914_4 1889393-1889498 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011914_5 3714573-3714671 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011914_1 1.3|170236|37|NZ_CP011914|PILER-CR 170236-170272 37 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 112252-112288 8 0.784
NZ_CP011914_1 1.33|172207|37|NZ_CP011914|PILER-CR 172207-172243 37 MK415407 Phage FAKO27_000271F, complete genome 45686-45722 8 0.784
NZ_CP011914_1 1.37|170237|36|NZ_CP011914|CRISPRCasFinder,CRT 170237-170272 36 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 112252-112287 8 0.778
NZ_CP011914_2 2.21|415736|34|NZ_CP011914|PILER-CR,CRISPRCasFinder,CRT 415736-415769 34 NC_030910 Pseudomonas phage K5, complete genome 67249-67282 9 0.735
NZ_CP011914_2 2.21|415736|34|NZ_CP011914|PILER-CR,CRISPRCasFinder,CRT 415736-415769 34 NC_028817 Pseudomonas phage K8, complete genome 67255-67288 9 0.735
NZ_CP011914_2 2.21|415736|34|NZ_CP011914|PILER-CR,CRISPRCasFinder,CRT 415736-415769 34 MH370478 Pseudomonas phage SRT6, complete genome 25166-25199 9 0.735

1. spacer 1.3|170236|37|NZ_CP011914|PILER-CR matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.784

taccgttatatcaaaaatcttaagaaataatacttgt	CRISPR spacer
tacttggatatcaaaaatcttaataaatactactttg	Protospacer
***.   **************** ***** *****  

2. spacer 1.33|172207|37|NZ_CP011914|PILER-CR matches to MK415407 (Phage FAKO27_000271F, complete genome) position: , mismatch: 8, identity: 0.784

gaactaaagagatgtcccttctgcgggggagaagcga	CRISPR spacer
gaacttaagagatgtccgttctgcggtgcaaagccgc	Protospacer
***** *********** ******** * *.*. ** 

3. spacer 1.37|170237|36|NZ_CP011914|CRISPRCasFinder,CRT matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.778

accgttatatcaaaaatcttaagaaataatacttgt	CRISPR spacer
acttggatatcaaaaatcttaataaatactactttg	Protospacer
**.   **************** ***** *****  

4. spacer 2.21|415736|34|NZ_CP011914|PILER-CR,CRISPRCasFinder,CRT matches to NC_030910 (Pseudomonas phage K5, complete genome) position: , mismatch: 9, identity: 0.735

gggtgtccctgttgtaaaagcgttcaccgcccca	CRISPR spacer
ctggctccctgttgtaacagcgttcatcgccggg	Protospacer
  *  ************ ********.****  .

5. spacer 2.21|415736|34|NZ_CP011914|PILER-CR,CRISPRCasFinder,CRT matches to NC_028817 (Pseudomonas phage K8, complete genome) position: , mismatch: 9, identity: 0.735

gggtgtccctgttgtaaaagcgttcaccgcccca	CRISPR spacer
ctggctccctgttgtaacagcgttcatcgccggg	Protospacer
  *  ************ ********.****  .

6. spacer 2.21|415736|34|NZ_CP011914|PILER-CR,CRISPRCasFinder,CRT matches to MH370478 (Pseudomonas phage SRT6, complete genome) position: , mismatch: 9, identity: 0.735

gggtgtccctgttgtaaaagcgttcaccgcccca	CRISPR spacer
ctggctccctgttgtaacagcgttcatcgccggg	Protospacer
  *  ************ ********.****  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 849655 : 857850 11 Bacillus_phage(25.0%) NA NA
DBSCAN-SWA_2 1021108 : 1030852 7 Synechococcus_phage(42.86%) NA NA
DBSCAN-SWA_3 1900576 : 1911040 19 Clostridium_phage(30.0%) NA NA
DBSCAN-SWA_4 1915174 : 1927144 18 Bacillus_phage(20.0%) terminase,portal NA
DBSCAN-SWA_5 3581568 : 3588538 13 Brevibacillus_phage(33.33%) NA NA
DBSCAN-SWA_6 3890088 : 3902889 14 Streptococcus_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage