CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013696	Pseudomonas aeruginosa strain 12-4-4(59) chromosome, complete genome	3 crisprs	csa3,DEDDh,cas3,PD-DExK,WYL,DinG	0	1	8	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013696_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013696_1

705759-705851

Orphan

Consensus_repeat	Method
GCCGACAACGGCAGCGAGCAGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013696_1

>merge|NZ_CP013696|1|705759-705851|CRISPRCasFinder
GCCGACAACGGCAGCGAGCAGACCATCGACCGCCTGCACAAGGACATGACCAAGGCCGAAGCCCGCCTGGCCGACAACGGCAGCGAACAGACC

>NZ_CP013696|1|1|705759-705851|CRISPRCasFinder
GCCGACAACGGCAGCGAGCAGACC	ATCGACCGCCTGCACAAGGACATGACCAAGGCCGAAGCCCGCCTG
GCCGACAACGGCAGCGAACAGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013696.1\|WP_003095519.1\|710257_711574_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NZ_CP013696.1\|WP_003099398.1\|698070_699336_+\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NZ_CP013696.1\|WP_004347735.1\|711793_712906_-\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|225779
NZ_CP013696.1\|WP_003095503.1\|704820_705354_+\|bacterioferritin	unknown	unknown	gnl\|CDD\|225104
NZ_CP013696.1\|WP_003095528.1\|715520_716192_+\|urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900
NZ_CP013696.1\|WP_003095483.1\|700071_700611_+\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
NZ_CP013696.1\|WP_010793714.1\|712902_714003_-\|ferredoxin-reductase	unknown	unknown	gnl\|CDD\|99812
NZ_CP013696.1\|WP_003161312.1\|706015_706783_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239026
NZ_CP013696.1\|WP_003161310.1\|706779_707394_-\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|226602
NZ_CP013696.1\|WP_003095488.1\|700699_701044_+\|osmotically-inducible-lipoprotein-OsmE	unknown	unknown	gnl\|CDD\|183058
NZ_CP013696.1\|WP_019681409.1\|696999_697863_-\|oxaloacetate-decarboxylase	unknown	unknown	gnl\|CDD\|225311
NZ_CP013696.1\|WP_031628309.1\|702455_704525_-\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|225529
NZ_CP013696.1\|WP_010895687.1\|696293_696908_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013696.1\|WP_003095496.1\|701641_702454_+\|c-di-GMP-binding-multidrug-transporter-transcriptional-regulator-BrlR	unknown	unknown	gnl\|CDD\|226231
NZ_CP013696.1\|WP_003095526.1\|715020_715524_+\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
NZ_CP013696.1\|WP_003095492.1\|701087_701495_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377850
NZ_CP013696.1\|WP_003095515.1\|708208_708898_+\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|130454
NZ_CP013696.1\|WP_003107570.1\|714161_714791_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236881
NZ_CP013696.1\|WP_003095479.1\|699500_699917_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183165
NZ_CP013696.1\|WP_003095513.1\|707447_708071_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013696.1\|WP_003095519.1\|710257_711574_-\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.70918e-108
NZ_CP013696.1\|WP_003099398.1\|698070_699336_+\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	0
NZ_CP013696.1\|WP_004347735.1\|711793_712906_-\|fatty-acid-desaturase	gnl\|CDD\|225779	COG3239, DesA, Fatty acid desaturase [Lipid metabolism].	5.19611e-66
NZ_CP013696.1\|WP_003095503.1\|704820_705354_+\|bacterioferritin	gnl\|CDD\|225104	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism].	1.01703e-50
NZ_CP013696.1\|WP_003095528.1\|715520_716192_+\|urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	2.28386e-66
NZ_CP013696.1\|WP_003095483.1\|700071_700611_+\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	5.52525e-29
NZ_CP013696.1\|WP_010793714.1\|712902_714003_-\|ferredoxin-reductase	gnl\|CDD\|99812	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	9.15519e-87
NZ_CP013696.1\|WP_003161310.1\|706779_707394_-\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|226602	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion].	1.20616e-69
NZ_CP013696.1\|WP_003161312.1\|706015_706783_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239026	cd02108, bact_SO_family_Moco, bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	7.66842e-96
NZ_CP013696.1\|WP_003095488.1\|700699_701044_+\|osmotically-inducible-lipoprotein-OsmE	gnl\|CDD\|183058	PRK11251, PRK11251, osmotically-inducible lipoprotein OsmE.	1.90142e-51
NZ_CP013696.1\|WP_019681409.1\|696999_697863_-\|oxaloacetate-decarboxylase	gnl\|CDD\|225311	COG2513, PrpB, PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism].	3.74421e-87
NZ_CP013696.1\|WP_031628309.1\|702455_704525_-\|AsmA-family-protein	gnl\|CDD\|225529	COG2982, AsmA, Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane].	0
NZ_CP013696.1\|WP_003095496.1\|701641_702454_+\|c-di-GMP-binding-multidrug-transporter-transcriptional-regulator-BrlR	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	1.65802e-48
NZ_CP013696.1\|WP_003095526.1\|715020_715524_+\|urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	2.44267e-58
NZ_CP013696.1\|WP_003095492.1\|701087_701495_-\|hypothetical-protein	gnl\|CDD\|377850	pfam07498, Rho_N, Rho termination factor, N-terminal domain. The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain (pfam07497).	0.000208897
NZ_CP013696.1\|WP_003095515.1\|708208_708898_+\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	2.43467e-112
NZ_CP013696.1\|WP_003107570.1\|714161_714791_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|236881	PRK11202, PRK11202, HTH-type transcriptional repressor FabR.	4.59942e-41
NZ_CP013696.1\|WP_003095479.1\|699500_699917_-\|hypothetical-protein	gnl\|CDD\|183165	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF.	1.76735e-18

>NZ_CP013696.1|WP_003095503.1|704820_705354_+|bacterioferritin
MTTVQLTDVQTLRDRARKNIQEGAVTEGYSADRQTVLRLLNEALATELVCFLRYKRHYFMATGLKASIAAAEFLEHANQEMQHADQLAERIMQLGGEPDFNPRGLEERSHAEYVEGKTLKDMVTENLIAERIAIDSYREIITYLGNDDPTTRRIFEEILAQEEEHADDMADILDDLA
>NZ_CP013696.1|WP_031628309.1|702455_704525_-|AsmA-family-protein
MTRGRKILTWSLASLVLLLAALVVFIATFDWNLIKPTLNEKVSAALNRPFAINGNLAVAWRREEGEEGWRAWIPWPRFSAEDITLGNPEWTVGKTKASEFASLERIEFRLAPLPLLWQTIRIPQIKLTQPRAELLRLADGRANWDFDLPASDSDEPSAWQLDIREIGFDKGSVSLDDQRLKTRLEVLVDPLGKPVPFGQLAGKALATGDAANAQDYVFGWKVKGTYKGQALAGSGKVGGMLALQDASKPFPLQAEVSAGSTRAAVVGTLTDPLNLGALDLRLKLSGTSMANLYPLTGITLPDTPAYSTDGHLLARLKEEGGALFRYENFNGKVGASDLHGSLTFVARQPRPKLSGKLTSEQLRFADLGPLIGADSNAEKQKRGQTSRQPGDKVLPVEEFRTERWRDMDADVEFTGKRIVHSDQLPISDLYTHLVLNDGLLRLEPLRFGVAGGKLESDIRLDGGKQPMQSRVKMSARGFKLKQLFPGFAPMQTSFGELNGDASLSGSGNSVAKILGGADGELKMLINDGAISKGLTEIAGLNVGNYLVTKLFGDDEVKINCAAADFGLQKGLMTSRLFVFDTENALVNVDGTVNFANEKLDLDVTPHSKGLRIFSLRSPLYVRGTFAKPDAGVHAGPLVARGAGMIALGVTVGPAASLLALVAPSKSDDNQCTALLQRMRLPAKVPAGKR
>NZ_CP013696.1|WP_003095496.1|701641_702454_+|c-di-GMP-binding-multidrug-transporter-transcriptional-regulator-BrlR
MLTIGQLARIFEISTKTLRHYDAIGLFVPARTGSDNGYRYYQPEQIEQLSRILALRRLDVPLEAIDRLKRDGALDDPQRLRHFLQRHQHTLREEISARQRLLAELDRTLATLAHWRIRNMHARIVERPAFSVVGMEYFGSAPGDTIGQLWERFIPREHEIAGKHDPEVSYGICAQQPNGEFHYVAGFEVQEGWPVPEGMVRFQVPAQKYAVFTHKGTAPQIAESFQAIYSHLLAERGLEPKAGVDFEYYDQRFRGPLDPNSQVDLYIPIY
>NZ_CP013696.1|WP_003095492.1|701087_701495_-|hypothetical-protein
MPRGDKSKYSDKQQRKAEHIEESYKAKGVSESEAEARAWATVNKQSGGGERKGGSGRAKSETAKRADRKDSAHRAAQARSGRPANRGSASRGKRQGSTSVSEMTREELMQLARKRDIRGRSTMRKAELIEALSRA
>NZ_CP013696.1|WP_003095488.1|700699_701044_+|osmotically-inducible-lipoprotein-OsmE
MYKQSLAALFVMATLAGCASTKVQNPVNYITFRNEPLVKDVEKGMSQQEVLRIGGTPSGTQKRLMKPGSCNSYILNKDGQQQPFYVSFDGSGKVDGSGFLSCSELDRHERDARP
>NZ_CP013696.1|WP_003095483.1|700071_700611_+|MOSC-domain-containing-protein
MQQVIAVSLCATHAFSKQVRPAIRLLKGLGVEGDAHHGVTVKHRSRVRQDPTQPNLRQVHLIHEELHDELRASGFAIGPGTMGENITTRGVDLLGLPTGTRLRLGESALVELTGLRNPCSQLDNYQPGLTAAVLGRDEQGNLIRKAGVMAIVLEDGEVRPGDAIDIQLPPLPHRALEKV
>NZ_CP013696.1|WP_003095479.1|699500_699917_-|hypothetical-protein
MNILRIPMFVLAMAVSAHGFAATAQQEKMTACNAEATTKALKGDERKAFMSGCLKAGAPAGGKATAQQEKMKSCNADASAKSLKGDERKAFMSSCLKAGGSAKAATQQEKMKTCNADATAKALKGDERKAFMSTCLKK
>NZ_CP013696.1|WP_003099398.1|698070_699336_+|Hsp70-family-protein
MNPSTAARALGIDFGTSNSTVGWWRPEVEPLIELEDGKITLPSVVFFNVEERRPVYGRQALGEYLEGYEGRLMRSLKSLLGSKLLKSETTVLGSALPFKDLLGLFIGQLKARGEAAAGQAFDAVVLGRPVFFVDDDPEADREAQDTLVQVANKLGFKEVSFQYEPIAAAFDYERCIQREELVLIVDIGGGTSDFSLVRLAPERRNLAERQDDILATGGVHIGGTDFDKQLSLEGVMPLFGYGSRMKSDAFMPTSYHLNLATWHTINAVYAQKSQLALKNMRYDIVDSTGIDRLFRLIEERAGHWLAMQVEDSKIRLTETERLHLSLERIEAGLGVELTRGLFENAVDGLLERVRNSVAQLLASAGVDPDRVDTVFFTGGSSGIPALRRSVSAMLPNARHVEGNLFGSIGSGLAIEAKKRYG
>NZ_CP013696.1|WP_019681409.1|696999_697863_-|oxaloacetate-decarboxylase
MHRASHHELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQAARIGRVARLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVASDLTASELSKKYTFPEEYQAWARDYMEVKE
>NZ_CP013696.1|WP_010895687.1|696293_696908_+|hypothetical-protein
MMGPFRRLAHLIDQGRQLDAALAGDPFALPAPEDRYSVRQLHGLYPRRHPGLYAPLLGSLALLLGAAPLGLAALRLALPEAPLRPLGWLSALPLLAAWLWLIALLSRGASLGPRLARDASLLLVGTGLLLRLASGETSGLVALGGGACAWLLFNSRAMQRYMELVYAQRLYRAQSANRPGSAQRRLANQAAYRERKRRERSGRS
>NZ_CP013696.1|WP_003161312.1|706015_706783_-|molybdopterin-dependent-oxidoreductase
MKGPEKKRAKIAVDPSSERQMVDLQRRLLLRGGLSLGALAMLSGCRLQDGDSVDKVLWAMSRWNDRVQAWLFSRMRLAPTFDPSQVASPFPFNAFYPAYNVPEIDLPEYRLQVSGRVRDKRPWSLEQLRRLPQASQVTQLICIEGWSAIGQWSGVPLRTFLELVGADTSAKYVGFKCADRYYSSLDMPSALHPQTLLALEMSGQALPEENGYPLRLRIPTKLGFKNAKHVVEIFVSNSNPGGYWEDQGYNWFSGV
>NZ_CP013696.1|WP_003161310.1|706779_707394_-|cytochrome-b/b6-domain-containing-protein
MNRALHAWPVRLCHWLNAYAMACLIGSGWGIYNASPLLDFRFPAWATLGGWLGGSIAWHLAAMWLLLGNGLCYLAHGLSSGHFRRDFLPLSAAGVWRDLRLALGLRLVHEPGRYNAVQRLLYWLVLALGALLVLSGLAIWKPVQLHGLTALFGGFQGARWVHFLAMAGVVGFVVVHLLLVLLVPRTLLPMIIGREWRRGRRSEG
>NZ_CP013696.1|WP_003095513.1|707447_708071_-|hypothetical-protein
MLRLKASPALLFGLLLASAASFAAQPPAGMLQPLRGTIQQAADDHLQLKARNGQQLTVRLTDKTAIRAVSLAKPEDIQPDSFIGTAAVPQPDGTLKALEVHVFAPSLRGSGEGHRPWENADGSASTMTNGTVGNLVVSQGRRMTVKYGDGEKTVVVPDDVPIVSLEPGERSLLKPGAKVVLFPQKGADGSLTALAISVGKDGVTPPM
>NZ_CP013696.1|WP_003095515.1|708208_708898_+|heavy-metal-response-regulator-transcription-factor
MRILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVVLDVMLPGLDGWQIMEVLRKKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVVREAEQVQLADLQLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASEVWDMNFDSDTNVVDVAIKRLRAKVDNPFPNKLIHTVRGIGYVCEERPCPPAAP
>NZ_CP013696.1|WP_003095519.1|710257_711574_-|MFS-transporter
MFSPLVTFPALYTATLLMLAGSGLFTTYIGLRLTQEGAGDLWVGGLMASYYFGLVCGGKFGHKLIASFGHIRSYVACAGIATVTVLLHALVDQLEVWLLLRFITGAVMMNQYMVIESWLNEQAESHQRGKVFAGYMVAVDLGLVLGQGLLALSPTLDYKPLLLVAICFASCLIPLAMTRRVHPAKLVAAPLEVRFFWQRVPQALGTIFIAGLMVGAFYGLAPVYANRNGLDASQSSFFVGMCIVAGFCAQWPLGWLSDRLDRSWLIRGNAVLLCLASIPMWGLVTLPYWLLLANGFVTGMLLFTLYPLAVALANDHVEQPRRVALSAMLLTTYGVGACIGPLVAGALMRHFGPGLFYMLVSGYAVLLVFWVQPKRVTGEHRVDEAPLQHVAMPDTVSPMAATLDPRVEEVPEELVVEAPANIGRSDGEPDAGEKPAQS
>NZ_CP013696.1|WP_004347735.1|711793_712906_-|fatty-acid-desaturase
MNRPASPAMRDDRELTPEQLAAFGAELDALRQRTLADLGADDARYIRRVRAAVRVCCWSGRALLMFGWLPPTWLLGSLLLGLGKILENMELGHNVMHGQYDWMNDPEFAGRAYEWDIAGPSDFWRHTHNHIHHTYTNVLGKDDDVGYGVVRLFPEQRWKPFYRWQPLWVTLQALLFQYAVAIQHLRLDKYAKGRLDKAELMPLLRRLRAKLGRQWTKDYLLFPLLGLFAGGFGAVFVGNLLANVLRNLWTFTVIFCGHFTEKAVVFPPSVLEGETRGHWYLRQLRGSSNLEGGPLFHILTGNLSHQIEHHLYPDLPARRYAALSREVREIARRYGQTYNSGRLGRQFLTVLRRIWVYRLPPREPLPAGRS
>NZ_CP013696.1|WP_010793714.1|712902_714003_-|ferredoxin-reductase
MALLPLALLTPLLAPLRRLAARGWLREADVDGLLRHAHPLASLNRHYARVEARYWVADDMLALALRTAPGWPPARPGQHIQLLAERDGVRVGRSYSLTRVVGERLEIAVKRHPDGLLSPWLCEHLAVGQRVELQPAQGDLRWPMQAEAVCLLAAGSGLTPLLGLLREALENGYRGPVLWLHYVRHPGQRAWLGELEALAARHPNLELRWSLTRGARADGCLEGHFQPRHLDGWATDLARSQALACGPAAFVEAVGEQLGARFAGLQTESFSVPRWRSGEAPREVRLRFARSQREVSGDSAASLLEQAEAHGLRPAHGCRQGICASCTCVLLSGCVRDLRSGALCSEPGQPIRLCVSAAHGDLALDL
>NZ_CP013696.1|WP_003107570.1|714161_714791_+|TetR-family-transcriptional-regulator
MSSPRAEQKQQTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYRHFSDMDQLGLALVAEVDETFRATLRAVRRNEFELGGLIDASVRIFLDAVGANRSQFLFLAREQYGGSLPIRQAIASLRQRITDDLAADLALLNKMPHLDGAALDVFADLVVKTVFATLPELIDPPAADLPPHLMPAAKITHQLRFIMIGGKHWHGLPG
>NZ_CP013696.1|WP_003095526.1|715020_715524_+|urease-accessory-protein-UreE
MLVIHQRLPARSPRWDEELHLTYEARSKSRLRCFAASGEEVGLFLERGQPPLADGDCLEARDGRLVRVVARSERLLHVTCASPLELTRAAYHLGNRHVALQVGDGWLRLLDDYVLKAMLEQLGATVEAIEAPFQPEHGAYGGGHHHSHHGEAEFNYAPRLHQFGVRR
>NZ_CP013696.1|WP_003095528.1|715520_716192_+|urease-accessory-protein-UreF
MNSIWARLRLASSQLPIGGYSYSQGLEAALDNGWVRDAESARTWLVDQLQLNLARFEAPLLAGLLRAALIGDWAACDAASERHRASRETRELAQESRQMGFSLHQLLEALPELDAPGRAWLARQDPPNLAAAWAMAARAWRLDAEEALSAWFWSWLENQLAVLMKTLPLGQLAAQKLASSLLPELDRACAEALRRPAVEGSAAFGLALASMTHETQYSRLFRS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP013696_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013696_2

1849529-1849642

Orphan

Consensus_repeat	Method
GGCCAAAGAACTGGAGGGCAAGGTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013696_2

>merge|NZ_CP013696|2|1849529-1849642|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGAGCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGTGGCCAAAGAACTGGAGGGCAAGGTATGA

>NZ_CP013696|2|2|1849529-1849642|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGA	GCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGT
GGCCAAAGAACTGGAGGGCAAGGTATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013696.1\|WP_003084299.1\|1844819_1845923_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP013696.1\|WP_003118763.1\|1855432_1856452_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP013696.1\|WP_003107781.1\|1838144_1839206_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP013696.1\|WP_003111119.1\|1836375_1837254_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP013696.1\|WP_003084297.1\|1843333_1844704_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_CP013696.1\|WP_003118764.1\|1857272_1857971_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226274
NZ_CP013696.1\|WP_003084290.1\|1841909_1843268_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP013696.1\|WP_003162098.1\|1837416_1838082_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP013696.1\|WP_003112942.1\|1854214_1854718_-\|transcriptional-regulator	unknown	unknown	unknown
NZ_CP013696.1\|WP_025270819.1\|1850685_1853073_-\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|225241
NZ_CP013696.1\|WP_003084339.1\|1859309_1860002_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP013696.1\|WP_003112941.1\|1853183_1854236_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP013696.1\|WP_003112938.1\|1841116_1841869_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
NZ_CP013696.1\|WP_003084320.1\|1856471_1857224_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013696.1\|WP_003118762.1\|1854822_1855434_-\|thiol-disulfide-isomerase	unknown	unknown	gnl\|CDD\|239267
NZ_CP013696.1\|WP_003112937.1\|1839461_1840838_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP013696.1\|WP_003118141.1\|1846341_1847439_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP013696.1\|WP_003112945.1\|1858812_1859307_+\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
NZ_CP013696.1\|WP_003084327.1\|1857992_1858547_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013696.1\|WP_003084303.1\|1847493_1848648_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226

Protein	Function_ID	Function_description	E-value
NZ_CP013696.1\|WP_003084299.1\|1844819_1845923_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP013696.1\|WP_003118763.1\|1855432_1856452_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	3.48481e-56
NZ_CP013696.1\|WP_003107781.1\|1838144_1839206_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.00795e-165
NZ_CP013696.1\|WP_003111119.1\|1836375_1837254_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP013696.1\|WP_003084297.1\|1843333_1844704_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_CP013696.1\|WP_003084339.1\|1859309_1860002_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.29364e-79
NZ_CP013696.1\|WP_003084290.1\|1841909_1843268_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158
NZ_CP013696.1\|WP_003162098.1\|1837416_1838082_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.25164e-09
NZ_CP013696.1\|WP_003118764.1\|1857272_1857971_+\|hypothetical-protein	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	2.81845e-78
NZ_CP013696.1\|WP_025270819.1\|1850685_1853073_-\|penicillin-acylase-family-protein	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0
NZ_CP013696.1\|WP_003112941.1\|1853183_1854236_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.54039e-32
NZ_CP013696.1\|WP_003112938.1\|1841116_1841869_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	1.81471e-108
NZ_CP013696.1\|WP_003118762.1\|1854822_1855434_-\|thiol-disulfide-isomerase	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.00342131
NZ_CP013696.1\|WP_003112937.1\|1839461_1840838_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.09186e-161
NZ_CP013696.1\|WP_003118141.1\|1846341_1847439_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP013696.1\|WP_003112945.1\|1858812_1859307_+\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	2.14015e-67
NZ_CP013696.1\|WP_003084303.1\|1847493_1848648_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0

>NZ_CP013696.1|WP_003084303.1|1847493_1848648_+|polyamine-ABC-transporter-ATP-binding-protein
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>NZ_CP013696.1|WP_003118141.1|1846341_1847439_+|polyamine-ABC-transporter-substrate-binding-protein
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVISKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>NZ_CP013696.1|WP_003084299.1|1844819_1845923_+|polyamine-ABC-transporter-substrate-binding-protein
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>NZ_CP013696.1|WP_003084297.1|1843333_1844704_+|aspartate-aminotransferase-family-protein
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>NZ_CP013696.1|WP_003084290.1|1841909_1843268_+|glutamine-synthetase
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>NZ_CP013696.1|WP_003112938.1|1841116_1841869_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGESIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACSKRAGQR
>NZ_CP013696.1|WP_003112937.1|1839461_1840838_-|glutamine-synthetase
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_CP013696.1|WP_003107781.1|1838144_1839206_-|polyamine-ABC-transporter-substrate-binding-protein
MPRLSALLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>NZ_CP013696.1|WP_003162098.1|1837416_1838082_-|TetR/AcrR-family-transcriptional-regulator
MQPTSPTRKPRASSQARIAAILDAARDLLADEGIGGLSIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLSGFISDLNR
>NZ_CP013696.1|WP_003111119.1|1836375_1837254_-|N-carbamoylputrescine-amidase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES
>NZ_CP013696.1|WP_025270819.1|1850685_1853073_-|penicillin-acylase-family-protein
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLAVAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLVAEKVNPDNPNQVWYQGEWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPTNGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWNGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALPRLAGDADSPWWDDRRTERRETRADIVRTAWNASLAHLRSTLGNDPSGWLWGKAHTLTHEHALGQQALLRRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>NZ_CP013696.1|WP_003112941.1|1853183_1854236_+|AraC-family-transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHDVLTRHAEEQSRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT
>NZ_CP013696.1|WP_003112942.1|1854214_1854718_-|transcriptional-regulator
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASKLIERVDDLQEDRLELRDKYVKRIAKNVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>NZ_CP013696.1|WP_003118762.1|1854822_1855434_-|thiol-disulfide-isomerase
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALRPLAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG
>NZ_CP013696.1|WP_003118763.1|1855432_1856452_+|alpha/beta-hydrolase
MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLRSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>NZ_CP013696.1|WP_003084320.1|1856471_1857224_-|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>NZ_CP013696.1|WP_003118764.1|1857272_1857971_+|hypothetical-protein
MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGDLTPAAIGRGDGQVIREGIRGDLTQWLEPGESEACDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>NZ_CP013696.1|WP_003084327.1|1857992_1858547_-|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGQAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>NZ_CP013696.1|WP_003112945.1|1858812_1859307_+|DUF523-domain-containing-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGNRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG
>NZ_CP013696.1|WP_003084339.1|1859309_1860002_-|amino-acid-ABC-transporter-permease
MNSLQKLLEWLANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLILGFSVAVVRVTKVPVVSQIAAVYVSAFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILGIDKGQWEAGLSVGLTWGQTLWNIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIAETFQPLPLYLAAAGIYWLLSALFERVQKALENRLTAPLRR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP013696_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013696_3

3444381-3444482

Orphan

Consensus_repeat	Method
GCGGCGGGTATCGGCGGATAACGCC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP013696_3

>merge|NZ_CP013696|3|3444381-3444482|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCCTCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTGCGGCGGGGTATCGGCGGATAACGCC

>NZ_CP013696|3|3|3444381-3444482|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCC	TCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTG
CGGCGGGGTATCGGCGGATAACGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013696.1\|WP_009876806.1\|3444618_3445743_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225688
NZ_CP013696.1\|WP_003119699.1\|3448763_3449591_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|131480
NZ_CP013696.1\|WP_003116398.1\|3441669_3443469_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225457
NZ_CP013696.1\|WP_003114814.1\|3451190_3451832_+\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|224103
NZ_CP013696.1\|WP_003116397.1\|3434718_3435576_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP013696.1\|WP_003091533.1\|3450726_3451044_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013696.1\|WP_003109184.1\|3446323_3448156_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP013696.1\|WP_003109191.1\|3452845_3453181_-\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
NZ_CP013696.1\|WP_003091547.1\|3439616_3439928_+\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704
NZ_CP013696.1\|WP_003114807.1\|3436522_3437884_-\|alpha/beta-fold-hydrolase	unknown	unknown	unknown
NZ_CP013696.1\|WP_003116401.1\|3451936_3452836_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP013696.1\|WP_003114812.1\|3448218_3448782_-\|peptidylprolyl-isomerase-A	unknown	unknown	gnl\|CDD\|182824
NZ_CP013696.1\|WP_003114810.1\|3443465_3444092_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236391
NZ_CP013696.1\|WP_003091546.1\|3439924_3441580_+\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|236495
NZ_CP013696.1\|WP_003091540.1\|3445775_3446042_-\|DUF2790-domain-containing-protein	unknown	unknown	gnl\|CDD\|371321
NZ_CP013696.1\|WP_003109182.1\|3444200_3444359_+\|DUF3309-domain-containing-protein	unknown	unknown	gnl\|CDD\|378708
NZ_CP013696.1\|WP_003091551.1\|3438026_3438248_-\|DUF2061-domain-containing-protein	unknown	unknown	gnl\|CDD\|225746
NZ_CP013696.1\|WP_003452840.1\|3438541_3439399_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270357
NZ_CP013696.1\|WP_003114806.1\|3435715_3436519_-\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|225409
NZ_CP013696.1\|WP_003091534.1\|3449597_3450527_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656

Protein	Function_ID	Function_description	E-value
NZ_CP013696.1\|WP_009876806.1\|3444618_3445743_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225688	COG3146, COG3146, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP013696.1\|WP_003119699.1\|3448763_3449591_-\|alpha/beta-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	2.13956e-42
NZ_CP013696.1\|WP_003116398.1\|3441669_3443469_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	0
NZ_CP013696.1\|WP_003114814.1\|3451190_3451832_+\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	1.18979e-103
NZ_CP013696.1\|WP_003116397.1\|3434718_3435576_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.4231e-96
NZ_CP013696.1\|WP_003109184.1\|3446323_3448156_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.066e-156
NZ_CP013696.1\|WP_003109191.1\|3452845_3453181_-\|tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	1.70058e-64
NZ_CP013696.1\|WP_003091547.1\|3439616_3439928_+\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	2.28294e-48
NZ_CP013696.1\|WP_003091551.1\|3438026_3438248_-\|DUF2061-domain-containing-protein	gnl\|CDD\|225746	COG3205, COG3205, Predicted membrane protein [Function unknown].	8.76037e-33
NZ_CP013696.1\|WP_003116401.1\|3451936_3452836_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	1.27099e-12
NZ_CP013696.1\|WP_003114812.1\|3448218_3448782_-\|peptidylprolyl-isomerase-A	gnl\|CDD\|182824	PRK10903, PRK10903, peptidylprolyl isomerase A.	5.29669e-93
NZ_CP013696.1\|WP_003114810.1\|3443465_3444092_+\|3'-5'-exonuclease	gnl\|CDD\|236391	PRK09145, PRK09145, 3'-5' exonuclease.	2.00701e-94
NZ_CP013696.1\|WP_003091546.1\|3439924_3441580_+\|cation-acetate-symporter	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_CP013696.1\|WP_003091540.1\|3445775_3446042_-\|DUF2790-domain-containing-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	1.53651e-35
NZ_CP013696.1\|WP_003109182.1\|3444200_3444359_+\|DUF3309-domain-containing-protein	gnl\|CDD\|378708	pfam11752, DUF3309, Protein of unknown function (DUF3309). This family is conserved in bacteria but its function is not known.	2.8739e-06
NZ_CP013696.1\|WP_003452840.1\|3438541_3439399_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.55277e-117
NZ_CP013696.1\|WP_003114806.1\|3435715_3436519_-\|VacJ-family-lipoprotein	gnl\|CDD\|225409	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane].	6.05055e-101
NZ_CP013696.1\|WP_003091534.1\|3449597_3450527_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.24343e-39

>NZ_CP013696.1|WP_003109182.1|3444200_3444359_+|DUF3309-domain-containing-protein
MSLGTILLIILILLLIGGLPVFPHSRNWGYGPSGIIGALLVVLLVLLLLGMI
>NZ_CP013696.1|WP_003114810.1|3443465_3444092_+|3'-5'-exonuclease
MNTMVKLPDSRWPGWRRRLYWWMHEAVEAEEVISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSLDAESIRIHKLRRADLEGQLQLEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISSLYHRKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLLKGPAPKVIH
>NZ_CP013696.1|WP_003116398.1|3441669_3443469_+|cyclic-nucleotide-binding/CBS-domain-containing-protein
MPDSFNFASPPFDQLRPHQRETLKQALSVGYYAPGETLLEAGSAVPGLFVLLKGVVEERGDDGRVFAQYAADDLFDVRGLFSGSSKHRYLAIEESIVYELPASCFHQLCGENPGFARFFQADLAAKRQLAQRDGQNLAEFILTRIAREHLLPALEVEASLSLGDAARLQLSHGADALLVRLERDGPELGIVTRTDLMSAHFRDGRSELEAIGPLAHGPLASVELGDFLFDAMILMTRQRIERVAVTEDGQVIGLLHLTQVLSLFSTHSHVLALRIARADDLGDLRRCAETLDTLIATLAGNGIRLRFIMQLVSALNEQLLERLFELLLPPTLRGRCCLLVMGSEGRGEQLLKTDQDNALVLADDLPQEQALAMMQRFSAALLEFGYPPCPGGVMASRPEWCKPLAAWQAELRGTLLEGKPEQLLRLSILADAWPVAGNLQLFEPLRRQLRGFADGGERWLADIAAAALQFDTPLTFLGQLKTQDARLDLKRGGIFPIVHGIRTLALREGLETRGTLARIEALKRHKVLEARLADDLSESFELFLQLRLTRQLAGQRDGRQQGLDVSGMSRHDRDMLRYGLHVVKKFKQSVARQFHLETR
>NZ_CP013696.1|WP_003091546.1|3439924_3441580_+|cation-acetate-symporter
MIARLLAALGLAAFAPALWADALTGDVQRQPLNVSAIVMFVAFVGATLCITYWASKRNRSAADYYAAGGRITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQKQIRTLSACGSLVVVAFYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVLYVLFGGMLATTWVQIIKAVLLLSGASFMAIMVLKHVNFDVSTLFSEAIKVHPKGEAIMSPGGLVKDPISAFSLGFALMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAILLVSTNPDFKDATGALIGGNNMAAVHLADAVGGSLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYASVFKGGKANEKDELRVSKMTTVALGVVAIVLGILFEKQNIAFMVGLAFSIAASCNFPVLLLSMYWKKLTTRGAMIGGWMGLITAVGLMVLGPTIWVQILGHEKAIYPYEYPALFSMIVAFVGIWFFSITDKSAAADEERARFFPQFIRSQTGLGASGAVAH
>NZ_CP013696.1|WP_003091547.1|3439616_3439928_+|DUF485-domain-containing-protein
MNDSIYQRIDTNPRFKELVAKRERFAWILSSIMLGLYVIFILLIAFQPQLLGARISPDSSVTWGIPMGVGLILAAFILTGLYVRRANGEFDSLNQEILKEAQQ
>NZ_CP013696.1|WP_003452840.1|3438541_3439399_+|glycine-betaine-ABC-transporter-substrate-binding-protein
MRMMRRLLCWSAGLAMSAAVGMAAAADKPVITIGYVDGWSDSVATTHVAAEVIREKLGYEVKLMPVAAGIMWQGVARGKLDAMLSAWLPGTHGAYYEKMKDKVVNLAINYPDARIGLIVPEYVSANSIADLQAQKDAFGGRVVGIDAGAGVMIKTDEAIKQYGLDYKLVASSGSGMIAELTRAENEKKPVVVTGWIPHWMFAKWKLKFLDDPKKVYGDTEHVDTVANPALEAKAKPVWEFLKKFGWRDGNEVGQVMLAIQEGAKPEDAAKQWVAANPGRVKDWVQ
>NZ_CP013696.1|WP_003091551.1|3438026_3438248_-|DUF2061-domain-containing-protein
MLKTLTFTVMHFIIAFSVAYALTGSIAVGGLVAAVEPLCNSVGFYFHEKIWKRFEKDGAPRPASAHGWLHRHA
>NZ_CP013696.1|WP_003114807.1|3436522_3437884_-|alpha/beta-fold-hydrolase
MPHFLRFAALLGGLALGCANLAQARDVDAASYGYPLTNPFEATIATTPPELRPELPHSEDIDQKDYSLKLRPEREFALPDNFWPVKKLRYRLARQDHAAPLIFIIAGTGAHYASSFPEYLKKLFYQAGYHVVQLSSPTSWDFMASASRFATPGFSSDDADDLYRVMQAVRAQQRDLPVTDYYLTGYSLGALNAAFVSHLDESRRSFNFKKVLLLNPPVNLYTSVSNLDKLVETQVKGITDSRTFYEVVLSKLTRYFRQKGYVDINDAMLYDFQQSKQRLSNEEMAMLIGTSFRFSAADIAFTSDLVNRRGLITPPNYPINEGTSLEPFFKRALQCDFECYMTEQLIPMWRARYDGGSLTQLVNQVSLYKLQDYLHDSPKIAVMHNADDVILGPGDLGFLRRTFGERLTVYPYGGHCGNLNYKVNAQDMLDFFATPAAGQTQVASAALTQQAGN
>NZ_CP013696.1|WP_003114806.1|3435715_3436519_-|VacJ-family-lipoprotein
MSRTAHWMFALLLSAAASAQADEAAAPAELPPRQLDGDGFSRPLDQLKFNPGLDQREFERATLDALNMYDPWESWNRRVYHFNYRFDEWVFLPVVRGYEYVTPHFVRSGVSNFFDNLGDVPNLLNNLAQLKGKAAMETTARLLFNTTFGVLGLWDPATRMGLHKRSEDFGQTLGFYGVGSGPYLVLPILGPSNLRDTGGLVVDYVGEYQVNYLNVPQASGDHPEITALRVVDKRYNTSFRYGQMNSPFEYEKLRYIYTEARKLQIAE
>NZ_CP013696.1|WP_003116397.1|3434718_3435576_-|pirin-family-protein
MTRYRDVLELHTGHPASDGAGVRLTRVIGGPSPERFDPFLMLDQFDTQNPDDYVAGFPSHPHRGFETVTYMLEGRMRHEDHLGNRGLLKPGGVQWMTAAHGIIHSEMPEQVEGAMRGFQLWVNLPAKNKLAPAGYRDIEPEDVPRLETAGGVKVTVIAGRFDDGQAQQIGAVERPDTEPHYYDLQLPAGGRIAPRLPDGHRVLLYVYEGSLTVEGERPVEIATNRLARLSEEGELSLRSEAGARVLVLAGKPLREPIVQYGPFVMNSREEIEQALRDYRDGVLAV
>NZ_CP013696.1|WP_009876806.1|3444618_3445743_+|GNAT-family-N-acetyltransferase
MPIQTLATLADIDAAEWDALLPPAQPFLRHAFLSALEDSHSVTPATGWRPAHRVLRDPQGRLCAALPAYVKAHSYGEYVFDWSWADACQRAGIRYYPKLLVGVPFTPVAGARLLGEDEGLQRLLASLGEEAEASGLSSIHVNFTDARADTLLAARDGWLERLGCQYHWHNRGYRDFQDFLEALSSRKRKQLRKEREQVGGQGIEFEWREGGQLSELEWDFVYLCYANTYLVRDRDPYLSREFFGLLAERMPEAIRVVFAHQRGKPVAMAFSLVAGDTLYGRYWGCLAEFDRLHFETCFYQGLEFAIGAGLARFDAGAQGEHKLIRGFEPVLTRSWHYLAHPGLRDAVAQFLEQERAGVRAYAEEAHGLLPYRQA
>NZ_CP013696.1|WP_003091540.1|3445775_3446042_-|DUF2790-domain-containing-protein
MKLASVVSAVITSLAPMAFAQDVDKDPGRGLPVEEYHYGMQLDVKNVLHRTDNSTRTGVVPVTVVYEDHSGELHKIRFLEWGGSTSNG
>NZ_CP013696.1|WP_003109184.1|3446323_3448156_-|ABC-transporter-ATP-binding-protein
MLYRRFERLIDPFRSASERMPPSEVLRFYVYFLRQVWPVFLALLVVGLIVALIEVALFSYLGRIVDLAQSTPSAEFFRVHANELIWMAVVALVLRPLFNALHDMLVHQSINPSMTNLIRWQNHRYVLKQSLGFFQNDFAGRIAQRIMQTGNSLRDSAVQVVDALWHVLIYTVSALVLFAEADWRLMIPLVLWVFAYVGALAYFVPQVKRRSVEASDSRSKLMGRIVDGYTNITTLKLFAHTRQEEDYAREAIGDQTLKSQRAGRVVTSMDVTITVMNGVLITGTTGLALWLWSQELISVGAIALATGLVIRINNMSGWIMWVVGGIFENIGQVQDGMQTIALPRKVVDREDAQPLRVERGEVEFEHIAFHYGKGSGVIQGLDLKVRPGEKIGLVGPSGAGKSTLVNLLLRLYDLESGRILVDGQDIAGVTQESLRAQIGMVTQDTSLLHRSIRDNLLYGRPGASDAELMEAVRKARADEFIPLLSDAEGRRGFDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVESAIQESLETLMQGKTVIAIAHRLSTIARMDRLVVLDKGHIAESGTHAELLAHGGLYARLWQHQTGGFVGVD
>NZ_CP013696.1|WP_003114812.1|3448218_3448782_-|peptidylprolyl-isomerase-A
MLKRLLIAACTLLFAGSLLAATPAAKPHVLIATSLGEIEVELDPAKAPISVKNFLEYVDSGYYDGTLFHRVIPGFMVQTGGFSAGMQEKKTRAPIKNEADNGLLNERGTLAMARTGVVDSATSQFFINLTDNDFLNHGARDFGYAVFGKVVRGMGVVDQIAKVPTTRRNGFADVPSDDVVILSAKRL
>NZ_CP013696.1|WP_003119699.1|3448763_3449591_-|alpha/beta-hydrolase
MPDFQHRDCTLVYDDHPGPTERAPVLLLHGLGSSARDWEYQLPALLGHYRLLVPDLRGHGRSGKPRGGYSMAGFAEDCAALLDRLGCGPVHLVGISMGGMIGFQLACDRPDLLRSLTIVNSTPEVIPRKPREHLEVAKRKLLSRLLSLRTIGRALGRLLFPKAEQAGLREKIEARWAENDKRAYLASLDAIIGWGVQERLAEIACPTLVISADRDYTPVSLKQAYCERIADARLVVVEDSRHATPMDQPEIFNTTLLGFLADIDKTKEQPCSNVS
>NZ_CP013696.1|WP_003091534.1|3449597_3450527_-|LysR-family-transcriptional-regulator
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSISYTVARMQEQLGVPLLRIDGRKAVLTEAGEVLLRRSRQLVKQAGQLEELAHHMEQGWEPEVRLVVDAAYPTARIVRSLSAFMPQSRGCRVLLREEVLSGVEEALIQGAADLAISGLIIPGHLGADLSVVEFVAVAHPDHPLHRLQRELTHQDLETQMQVVIRDSGRLQPRDHGWLGAEQRWTVGSLATAATFVGNGLGFAWLPRHIIERELQSGQLKPLPLSQGGVRQSRFYLYTNKEKPLGPASQILMEMLKSFANVPLNAPFAAPEPAAE
>NZ_CP013696.1|WP_003091533.1|3450726_3451044_+|hypothetical-protein
MKRLCCFALSLLPLSAFAYPIEVDPQLNGTEVSYSTQDIGRDMGAILLTNLGGQAAECTAVFRNGPETPKVRKGVIQPGQNSNFTAQFGRDIIKLRIKLTCKIAK
>NZ_CP013696.1|WP_003114814.1|3451190_3451832_+|FMN-dependent-NADH-azoreductase
MSRVLVIESSARQRGSVSRLLTAEFISHWKIAHPADRFQVRDLAREPLPHLDELLLGAWTTPCDGHSAAERRALERSNRLTEELRMADVLVLAAPMYNFAIPSSLKSWFDHVLRAGLTFRYAEQGPEGLLQGKRAFVLTARGGIYAGGGLDHQEPYLRQVLGFVGIHDVTFIHAEGMNMGPEFREKGLARARERMRQALETDTSLCVPLPTLR
>NZ_CP013696.1|WP_003116401.1|3451936_3452836_-|DMT-family-transporter
MNRRSALAALHGGALLFGLTGVFGKLASASPGVIVFGRALFAVLALGLFARLAGQAWRALGPAQWLRLALCGLLLAGHWVSFFIAVKTAGVAIATLGFASFPAFTVILEGLLFRERIHLAEGLLVVLVSLGLVLVTPNFDLASGATLGLLWAILSGLLFALLSLANRSNSGQVGPVQAALWQNLVVALCLLPFAVGELPALPALDWLWLALLGVFCTGLAHSLFVASLAVVKARTAALVFALEPVYGIAFAWLLFHETPGPRMFLGGALIILAIVLSARLGARGRKTAVGDERGDPERA
>NZ_CP013696.1|WP_003109191.1|3452845_3453181_-|tRNA-binding-protein
MDIIEWQDFERVELRVGTILSAAPNPKARKPAYVLEVDLGPLGLRTSSAQLTAHYQAEQLVGRQVLCVCNFAPKQIAGVRSEVLVTGVYDSEDKVVLAGFDKPLPNGARLA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013696_3	3.1\|3444406\|52\|NZ_CP013696\|CRISPRCasFinder	3444406-3444457	52	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	63791-63842	0	1.0

1. spacer 3.1|3444406|52|NZ_CP013696|CRISPRCasFinder matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 0, identity: 1.0

tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	CRISPR spacer
tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	Protospacer
****************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2143066 : 2195820

uncultured_Caudovirales_phage(29.17%)

tRNA,tail,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003099590.1\|2143066_2144092_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-108	58.1
WP_003085061.1\|2144170_2144740_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003099587.1\|2144823_2145177_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_003142783.1\|2145167_2145710_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_003099584.1\|2145682_2146915_-	multifunctional CCA addition/repair protein	A0A076G5T8	Escherichia_phage	2.6e-77	43.1
WP_009875777.1\|2146958_2147465_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_003099581.1\|2147558_2149112_-	SpoVR family protein	NA	NA	NA	NA
WP_003099579.1\|2149108_2150380_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.2e-09	37.2
WP_003085078.1\|2150480_2152403_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_003099577.1\|2152680_2153013_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_003113213.1\|2153056_2153908_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	1.1e-08	33.3
WP_003085085.1\|2153907_2154288_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_003099569.1\|2154324_2155131_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_003109023.1\|2155246_2156233_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_003109024.1\|2156229_2157522_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_016852409.1\|2157502_2160292_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_003099554.1\|2160418_2161435_+	phosphotransferase	NA	NA	NA	NA
WP_003099549.1\|2161431_2162106_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_003099547.1\|2162107_2162866_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_009875782.1\|2162866_2163928_-	DUF3530 family protein	NA	NA	NA	NA
WP_003109040.1\|2164079_2166473_+	PAS domain S-box protein	NA	NA	NA	NA
WP_003099542.1\|2166521_2167151_+	response regulator transcription factor	NA	NA	NA	NA
WP_003085106.1\|2167279_2168314_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_003085109.1\|2168547_2169657_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-28	34.4
WP_003099539.1\|2169712_2170759_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003109044.1\|2170871_2172119_+	ABC transporter permease	NA	NA	NA	NA
WP_003099535.1\|2172224_2173055_+	ABC transporter permease	NA	NA	NA	NA
WP_003085122.1\|2173178_2173853_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_058150026.1\|2173852_2174671_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_003085126.1\|2174743_2176222_+	anthranilate synthase component I	NA	NA	NA	NA
WP_003113203.1\|2176539_2176854_-	transcription regulatory protein PrtN	NA	NA	NA	NA
WP_058150025.1\|2176953_2177724_-	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	1.4e-71	59.1
WP_003085132.1\|2178181_2178382_+	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
WP_003118907.1\|2178429_2178789_+	hypothetical protein	NA	NA	NA	NA
WP_003118908.1\|2179151_2179601_+	hypothetical protein	B5TK61	Pseudomonas_phage	5.0e-26	53.3
WP_003113200.1\|2179622_2180138_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	4.1e-32	42.9
WP_003121844.1\|2180134_2180692_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	6.0e-45	70.3
WP_003085143.1\|2180844_2181171_+	hypothetical protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.2e-30	60.2
WP_003085151.1\|2181167_2182055_+	bacteriophage protein	S4TNY7	Salmonella_phage	5.3e-88	59.8
WP_003129210.1\|2182047_2182581_+\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	6.7e-62	64.0
WP_031673305.1\|2182582_2184658_+\|tail	phage tail fiber protein	Q9ZXK6	Pseudomonas_virus	1.3e-196	49.9
WP_003118913.1\|2184654_2185113_+	hypothetical protein	NA	NA	NA	NA
WP_003121848.1\|2185155_2186316_+\|tail	phage tail sheath family protein	Q38068	Phage_PS17	1.2e-188	83.4
WP_003085175.1\|2186328_2186832_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	8.0e-65	73.5
WP_003085178.1\|2186846_2187191_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_023129209.1\|2187360_2189598_+\|tail	phage tail length determinator protein	NA	NA	NA	NA
WP_003085182.1\|2189607_2190480_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	3.9e-75	51.7
WP_003101635.1\|2190454_2190661_+	hypothetical protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.3e-18	64.2
WP_003113193.1\|2190718_2191708_+	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	7.5e-107	55.8
WP_058150023.1\|2191740_2192370_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	7.9e-86	77.5
WP_004355109.1\|2192366_2192729_+	hypothetical protein	NA	NA	NA	NA
WP_031800321.1\|2192725_2192983_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	1.1e-17	63.4
WP_003101640.1\|2193330_2193936_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.0e-75	65.8
WP_003085203.1\|2193937_2194987_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
WP_003085205.1\|2194983_2195820_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.1e-70	56.9

DBSCAN-SWA_2

2357922 : 2398644

Pseudomonas_phage(90.74%)

integrase,head,transposase

attL 2350526:2350545|attR 2400742:2400761

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2350526:2350545	attL	NA	NA	NA	NA
WP_023082759.1\|2357922_2359014_-	2,3-butanediol dehydrogenase	A0A2K9L7I1	Tupanvirus	1.2e-09	25.2
WP_058836731.1\|2359027_2360116_-	acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit	A0A1D8EUH4	Mycobacterium_phage	3.1e-05	38.8
WP_003127781.1\|2360198_2360567_-	hypothetical protein	J9SGX4	Pseudomonas_phage	1.1e-63	100.0
WP_058836732.1\|2360529_2361111_-	hypothetical protein	J9RWB3	Pseudomonas_phage	1.0e-95	97.8
WP_014603985.1\|2361110_2361677_-	regulatory protein GemA	J9SVT5	Pseudomonas_phage	5.4e-102	100.0
WP_015975360.1\|2361663_2362131_-	hypothetical protein	Q5ZR13	Pseudomonas_phage	8.2e-80	100.0
WP_003148480.1\|2362132_2362351_-	hypothetical protein	J9STW0	Pseudomonas_phage	2.8e-30	97.2
WP_003094188.1\|2362352_2363042_-	DUF2786 domain-containing protein	Q5ZR11	Pseudomonas_phage	1.3e-126	100.0
WP_015649401.1\|2363043_2363667_-	DUF3164 family protein	Q5ZR10	Pseudomonas_phage	1.0e-109	99.5
WP_010791825.1\|2363659_2363860_-	hypothetical protein	A0A0S4L5A8	Pseudomonas_phage	3.9e-31	98.5
WP_031299623.1\|2363852_2364386_-	hypothetical protein	J9STN6	Pseudomonas_phage	1.1e-93	100.0
WP_031630706.1\|2364375_2365056_-	hypothetical protein	J9SNC1	Pseudomonas_phage	1.4e-128	99.1
WP_058181535.1\|2365055_2365340_-	hypothetical protein	J9SGZ7	Pseudomonas_phage	7.5e-44	98.9
WP_058836733.1\|2365336_2365678_-	hypothetical protein	J9RWC3	Pseudomonas_phage	4.8e-53	93.8
WP_003127825.1\|2365679_2366852_-	AAA family ATPase	Q5ZR05	Pseudomonas_phage	1.9e-202	94.4
WP_079755184.1\|2366851_2368633_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q5ZR04	Pseudomonas_phage	0.0e+00	99.3
WP_033946007.1\|2368635_2369562_-	DUF3102 domain-containing protein	Q5ZR03	Pseudomonas_phage	1.9e-149	90.9
WP_015649409.1\|2369572_2369881_-	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	5.4e-48	100.0
WP_003127832.1\|2369873_2370359_-	hypothetical protein	Q5ZR01	Pseudomonas_phage	7.4e-92	100.0
WP_046720598.1\|2370482_2370707_+	hypothetical protein	NA	NA	NA	NA
WP_025921029.1\|2370991_2371222_-	DNA-binding protein	J9RWM8	Pseudomonas_phage	1.4e-32	90.8
WP_046720599.1\|2371335_2371695_+	helix-turn-helix domain-containing protein	E5E3P4	Burkholderia_phage	2.2e-16	48.5
WP_033967124.1\|2371711_2372215_+	hypothetical protein	J9RWD8	Pseudomonas_phage	2.0e-79	92.8
WP_003138152.1\|2372405_2372663_+	membrane protein	J9STQ9	Pseudomonas_phage	5.6e-38	100.0
WP_024007974.1\|2372820_2373450_+	transglycosylase SLT domain-containing protein	J9SH25	Pseudomonas_phage	2.4e-119	99.0
WP_071538434.1\|2373446_2373659_+	hypothetical protein	Q5ZQZ0	Pseudomonas_phage	1.5e-28	92.9
WP_003126999.1\|2373645_2374269_+	hypothetical protein	J9SVX5	Pseudomonas_phage	4.1e-103	94.2
WP_003117315.1\|2374268_2374589_+	DUF2730 family protein	J9STR5	Pseudomonas_phage	5.1e-49	100.0
WP_003117314.1\|2374585_2374888_+	hypothetical protein	J9SNG3	Pseudomonas_phage	1.1e-48	100.0
WP_003117313.1\|2374890_2375439_+	DUF3486 family protein	J9SH37	Pseudomonas_phage	7.6e-77	99.5
WP_058181538.1\|2375440_2377114_+	hypothetical protein	J9RWF2	Pseudomonas_phage	0.0e+00	99.6
WP_003138157.1\|2377116_2378682_+	DUF935 domain-containing protein	J9SVY0	Pseudomonas_phage	2.2e-286	96.2
WP_016852447.1\|2378671_2379910_+	hypothetical protein	J9STS2	Pseudomonas_phage	5.8e-242	99.5
WP_016852448.1\|2379911_2380487_+	phage virion morphogenesis protein	J9SNH3	Pseudomonas_phage	2.9e-103	99.0
WP_003138161.1\|2380697_2381807_+	hypothetical protein	J9SH47	Pseudomonas_phage	2.9e-200	99.2
WP_003121593.1\|2381812_2382217_+	hypothetical protein	J9RWG0	Pseudomonas_phage	1.8e-67	100.0
WP_003127513.1\|2382231_2383128_+\|head	head protein	J9SVY7	Pseudomonas_phage	1.3e-171	100.0
WP_003121493.1\|2383359_2383575_+	hypothetical protein	J9STT1	Pseudomonas_phage	1.5e-33	100.0
WP_003121492.1\|2383577_2384093_+	DUF1320 domain-containing protein	J9SNI4	Pseudomonas_phage	3.5e-92	100.0
WP_003138162.1\|2384089_2384542_+	hypothetical protein	J9SH57	Pseudomonas_phage	2.1e-80	99.3
WP_003127509.1\|2384538_2384742_+	hypothetical protein	J9RWG5	Pseudomonas_phage	1.7e-29	100.0
WP_058836734.1\|2384748_2385489_+	hypothetical protein	J9SVZ4	Pseudomonas_phage	7.0e-134	98.4
WP_016852450.1\|2385491_2385974_+	hypothetical protein	J9STT8	Pseudomonas_phage	2.8e-83	99.4
WP_049967619.1\|2385928_2386111_-	hypothetical protein	J9SNJ6	Pseudomonas_phage	1.2e-26	100.0
WP_058836735.1\|2386227_2389851_+	tape measure protein	J9SH65	Pseudomonas_phage	0.0e+00	97.8
WP_058836736.1\|2389858_2390815_+	hypothetical protein	J9RWH1	Pseudomonas_phage	2.3e-190	99.4
WP_003094576.1\|2390816_2391740_+	hypothetical protein	A0A0A1IX02	Pseudomonas_phage	3.7e-185	100.0
WP_058836737.1\|2391739_2393443_+	hypothetical protein	A0A075CEZ1	Pseudomonas_phage	0.0e+00	98.8
WP_003117241.1\|2393432_2394254_+	DUF2163 domain-containing protein	L7P825	Pseudomonas_phage	6.5e-165	100.0
WP_003094581.1\|2394262_2394502_+	hypothetical protein	A0A0U5KN06	unidentified_phage	3.6e-39	100.0
WP_003117240.1\|2394498_2394717_+	hypothetical protein	A0A0U5KRQ8	unidentified_phage	2.6e-36	100.0
WP_055320592.1\|2394706_2396914_+	hypothetical protein	L7P7W0	Pseudomonas_phage	0.0e+00	99.9
WP_034069571.1\|2396910_2398062_+	hypothetical protein	L7P7J3	Pseudomonas_phage	7.6e-228	99.7
WP_016068576.1\|2398058_2398346_+	hypothetical protein	L7P826	Pseudomonas_phage	5.6e-47	100.0
WP_003121473.1\|2398419_2398644_+	hypothetical protein	A0A125RNE4	Pseudomonas_phage	5.5e-34	100.0
2400742:2400761	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2978911 : 2987940

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079755226.1\|2978911_2979547_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.3e-40	51.7
WP_058150246.1\|2979592_2980486_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
WP_003113871.1\|2980590_2981595_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
WP_003119354.1\|2982021_2982345_-	ferredoxin family protein	NA	NA	NA	NA
WP_003113873.1\|2982411_2984979_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.2e-24	22.1
WP_058150244.1\|2985104_2986112_-	TolB family protein	NA	NA	NA	NA
WP_003092262.1\|2986259_2986766_+	CinA family protein	B5TK85	Pseudomonas_phage	8.1e-57	76.0
WP_003092260.1\|2986899_2987940_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5

DBSCAN-SWA_4

3078953 : 3129810

Pseudomonas_phage(75.0%)

capsid,terminase,integrase,tail,head

attL 3079992:3080050|attR 3129952:3130010

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003092090.1\|3078953_3079871_-	ornithine carbamoyltransferase	M1HGA5	Paramecium_bursaria_Chlorella_virus	2.0e-21	27.6
3079992:3080050	attL	NA	NA	NA	NA
WP_058836744.1\|3080052_3081219_-\|integrase	site-specific integrase	A0A1B0Z061	Pseudomonas_phage	4.1e-221	98.5
WP_042853643.1\|3081527_3081827_-	hypothetical protein	A0A125RNP8	Pseudomonas_phage	1.3e-30	52.6
WP_034057841.1\|3082194_3082449_-	hypothetical protein	NA	NA	NA	NA
WP_058836746.1\|3082448_3082694_-	hypothetical protein	B5WZV5	Pseudomonas_phage	1.2e-26	71.4
WP_058836841.1\|3082686_3083136_-	hypothetical protein	NA	NA	NA	NA
WP_033989679.1\|3083132_3083618_-	phage protein	W6MVE9	Pseudomonas_phage	4.5e-89	98.8
WP_058836747.1\|3083788_3084106_-	hypothetical protein	A0A0U4JNZ9	Pseudomonas_phage	9.2e-51	93.3
WP_058836748.1\|3084150_3084642_-	hypothetical protein	A0A125RNQ6	Pseudomonas_phage	7.9e-25	70.3
WP_071536751.1\|3085971_3086196_-	hypothetical protein	A0A0S2SYB6	Pseudomonas_phage	1.0e-35	97.3
WP_058836749.1\|3086358_3086958_-	hypothetical protein	A0A0U4JEE7	Pseudomonas_phage	1.1e-108	98.0
WP_058836750.1\|3087021_3087468_-	single-stranded DNA-binding protein	A0A0U4K5C0	Pseudomonas_phage	5.1e-63	91.8
WP_023083007.1\|3087464_3088109_-	hypothetical protein	F8TUK8	EBPR_podovirus	1.0e-24	36.0
WP_058836751.1\|3088105_3088855_-	single-stranded DNA-binding protein	A0A125RNR3	Pseudomonas_phage	1.8e-52	58.5
WP_145902609.1\|3088911_3089151_-	hypothetical protein	NA	NA	NA	NA
WP_058836752.1\|3089432_3089729_-	hypothetical protein	A0A0S2SY04	Pseudomonas_phage	1.9e-18	51.2
WP_158511584.1\|3089725_3090211_-	HNH endonuclease	A5H1L2	Xanthomonas_virus	1.5e-28	44.5
WP_058836753.1\|3090231_3090798_-	hypothetical protein	A0A291I9C8	Pseudomonas_phage	8.8e-36	48.0
WP_058836754.1\|3090794_3091160_-	hypothetical protein	W6MYA8	Pseudomonas_phage	1.1e-63	95.8
WP_071557630.1\|3091198_3091675_-	DUF2591 family protein	A0A2H4J8F6	uncultured_Caudovirales_phage	2.0e-12	33.5
WP_145902610.1\|3091982_3092210_-	hypothetical protein	NA	NA	NA	NA
WP_058836755.1\|3092860_3093571_-	LexA family transcriptional regulator	B1B6L9	Salmonella_phage	2.2e-31	38.2
WP_023113651.1\|3093671_3093851_+	hypothetical protein	A0A0S2SYB8	Pseudomonas_phage	6.6e-14	66.1
WP_033944536.1\|3093864_3094053_+	hypothetical protein	NA	NA	NA	NA
WP_033944537.1\|3094071_3094269_+	hypothetical protein	NA	NA	NA	NA
WP_079755187.1\|3094343_3095153_+	helix-turn-helix domain-containing protein	B5WZX9	Pseudomonas_phage	3.4e-150	99.6
WP_058836756.1\|3095152_3095803_+	Replication protein P	W6MVG8	Pseudomonas_phage	3.6e-118	98.1
WP_058836757.1\|3096236_3096452_+	hypothetical protein	W6MW49	Pseudomonas_phage	6.5e-32	90.1
WP_003158992.1\|3096700_3097102_+	NinB family protein	A0A059VG13	Pseudomonas_phage	5.8e-34	53.6
WP_058836758.1\|3097098_3097404_+	hypothetical protein	Q9MC48	Pseudomonas_phage	1.4e-08	41.4
WP_058836759.1\|3097400_3097610_+	hypothetical protein	NA	NA	NA	NA
WP_025997431.1\|3097606_3097909_+	hypothetical protein	A0A0H5ARP9	Pseudomonas_phage	3.4e-34	70.0
WP_158511585.1\|3098048_3098336_+	hypothetical protein	NA	NA	NA	NA
WP_058836761.1\|3098332_3098716_+	hypothetical protein	NA	NA	NA	NA
WP_079755189.1\|3098715_3099021_+	DUF3310 domain-containing protein	A0A127KNN9	Pseudomonas_phage	8.7e-22	70.6
WP_145902612.1\|3099004_3099610_+	HNH endonuclease	M4W6M2	Bacillus_phage	1.2e-09	42.5
WP_058836762.1\|3099609_3100623_+	hypothetical protein	NA	NA	NA	NA
WP_058836763.1\|3100619_3101192_+	hypothetical protein	H2BDI9	Pseudomonas_virus	8.3e-26	36.6
WP_033943704.1\|3101701_3102094_+	hypothetical protein	B5WZY9	Pseudomonas_phage	1.9e-66	98.5
WP_033943960.1\|3102090_3102525_+	lysozyme	A0A0S2SYD0	Pseudomonas_phage	2.9e-31	49.3
WP_058836764.1\|3102707_3102956_+	hypothetical protein	A0A0H5AWC3	Pseudomonas_phage	2.5e-19	53.2
WP_058836765.1\|3102948_3103302_+	hypothetical protein	B5WZZ2	Pseudomonas_phage	6.0e-51	90.6
WP_079389667.1\|3103667_3103961_+	HNH endonuclease	B5WZZ4	Pseudomonas_phage	1.2e-33	68.8
WP_049285108.1\|3104103_3104544_+	hypothetical protein	S4TNN3	Salmonella_phage	1.9e-09	37.0
WP_049285106.1\|3104543_3106211_+\|terminase	terminase large subunit	A0A2H4JDK9	uncultured_Caudovirales_phage	4.1e-182	63.8
WP_058836766.1\|3106270_3108271_+\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	1.8e-144	47.2
WP_058836767.1\|3108315_3108612_+	hypothetical protein	B5WZS0	Pseudomonas_phage	3.3e-18	52.6
WP_034061107.1\|3108621_3108840_+	hypothetical protein	NA	NA	NA	NA
WP_023120627.1\|3111223_3111598_+\|head,tail	phage gp6-like head-tail connector protein	B5WZS4	Pseudomonas_phage	1.9e-63	96.8
WP_079755191.1\|3111607_3111949_+\|head	phage head closure protein	B5WZS5	Pseudomonas_phage	1.7e-55	92.9
WP_058836769.1\|3111948_3112518_+	hypothetical protein	B5WZS6	Pseudomonas_phage	9.0e-105	92.6
WP_058836770.1\|3112514_3113327_+	hypothetical protein	B5WZS7	Pseudomonas_phage	2.6e-158	96.3
WP_079755192.1\|3113277_3113895_+	methyltransferase domain-containing protein	A0A0U4IIB3	Pseudomonas_phage	3.1e-95	76.6
WP_015994276.1\|3113887_3114334_+	hypothetical protein	B5WZS9	Pseudomonas_phage	6.4e-66	100.0
WP_079755193.1\|3114333_3114705_+	DUF3168 domain-containing protein	B5WZT0	Pseudomonas_phage	1.4e-66	98.4
WP_015994278.1\|3114892_3115387_+	structural protein	A0A1V0E8B3	Vibrio_phage	3.7e-46	56.1
WP_058836772.1\|3115396_3115759_+	hypothetical protein	B5WZT2	Pseudomonas_phage	8.6e-61	98.3
WP_058836773.1\|3116103_3118857_+	hypothetical protein	A0A0S2SYD9	Pseudomonas_phage	9.1e-94	40.4
WP_079755194.1\|3118853_3119318_+	hypothetical protein	B5WZT5	Pseudomonas_phage	3.4e-86	96.8
WP_058836774.1\|3119314_3119803_+	DUF1833 family protein	B5WZT6	Pseudomonas_phage	4.2e-87	96.9
WP_058836775.1\|3120186_3122922_+	hypothetical protein	H2BDC9	Pseudomonas_virus	0.0e+00	85.0
WP_158511586.1\|3122981_3124958_+	hypothetical protein	Q9MC94	Pseudomonas_phage	6.8e-67	94.6
WP_079755196.1\|3125035_3125818_+	AAC(3) family N-acetyltransferase	NA	NA	NA	NA
WP_079755227.1\|3125753_3127097_+	DUF4910 domain-containing protein	NA	NA	NA	NA
WP_158511587.1\|3127188_3128196_+	acyltransferase family protein	A0A2H4JA46	uncultured_Caudovirales_phage	9.3e-12	27.9
WP_058836777.1\|3128252_3128882_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	9.9e-113	95.7
WP_058836778.1\|3128878_3129247_+	hypothetical protein	H2BDA0	Pseudomonas_phage	3.6e-46	82.8
WP_058836779.1\|3129243_3129507_+	hypothetical protein	B5WZU5	Pseudomonas_phage	1.7e-34	87.4
WP_058836780.1\|3129543_3129810_+	hypothetical protein	L7TP56	Pseudomonas_virus	1.6e-43	96.6
3129952:3130010	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3875294 : 3925345

uncultured_Caudovirales_phage(25.0%)

portal,tRNA,protease,terminase,integrase,head

attL 3864183:3864199|attR 3918822:3918838

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3864183:3864199	attL	NA	NA	NA	NA
WP_003090915.1\|3875294_3876170_-\|protease	protease HtpX	NA	NA	NA	NA
WP_003115276.1\|3876303_3876756_-	hypothetical protein	NA	NA	NA	NA
WP_003090913.1\|3876806_3878018_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_003090911.1\|3878202_3878601_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_003090910.1\|3878712_3879198_+	glutathione peroxidase	Q6VZR0	Canarypox_virus	8.1e-22	40.0
WP_003114767.1\|3879194_3879686_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_003158678.1\|3879704_3882065_-	response regulator	A0A1V0SGX0	Hokovirus	1.8e-45	28.3
WP_003143737.1\|3882147_3883038_+	ATP-binding protein	NA	NA	NA	NA
WP_003090905.1\|3883034_3883517_+	GAF domain-containing protein	NA	NA	NA	NA
WP_058150833.1\|3883526_3884189_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003090903.1\|3884250_3885024_-	hypothetical protein	NA	NA	NA	NA
WP_014602742.1\|3885979_3887557_+	EAL domain-containing protein	NA	NA	NA	NA
WP_003090890.1\|3887623_3888034_-	hypothetical protein	NA	NA	NA	NA
WP_003119883.1\|3888092_3888473_-	hypothetical protein	NA	NA	NA	NA
WP_003108955.1\|3888601_3891049_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_003098789.1\|3891201_3891873_+	transglutaminase family protein	NA	NA	NA	NA
WP_003108953.1\|3891987_3892608_+	glutathione S-transferase	NA	NA	NA	NA
WP_003090885.1\|3892683_3893616_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.4e-22	30.7
WP_003119886.1\|3893612_3894392_+	ABC transporter permease	NA	NA	NA	NA
WP_058150835.1\|3894441_3895773_-	sensor histidine kinase	A0A1V0SGX0	Hokovirus	1.9e-12	26.5
WP_003098784.1\|3895769_3896450_-	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	1.4e-27	33.5
WP_003090881.1\|3896575_3896767_+	repressor PtrA	NA	NA	NA	NA
WP_003119888.1\|3896938_3897556_+	hypothetical protein	NA	NA	NA	NA
WP_003098780.1\|3897673_3898504_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	A0A126HHM5	Vibrio_phage	1.3e-32	37.0
WP_003090878.1\|3898570_3898834_-	DUF4404 family protein	NA	NA	NA	NA
WP_003090877.1\|3898907_3899489_-	HD domain-containing protein	A0A2K9L4U0	Tupanvirus	7.7e-19	37.1
WP_003114775.1\|3899485_3900229_-	HAD family phosphatase	NA	NA	NA	NA
WP_003104061.1\|3900362_3901082_+	UTRA domain-containing protein	NA	NA	NA	NA
WP_003104059.1\|3901083_3901488_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003114777.1\|3901590_3902295_+	VacJ family lipoprotein	NA	NA	NA	NA
WP_003104055.1\|3902352_3902652_-	PilZ domain-containing protein	NA	NA	NA	NA
WP_054377872.1\|3902898_3904083_+	SpoIIE family protein phosphatase	Q56AR1	Bacillus_thuringiensis_phage	7.3e-08	31.9
WP_003104052.1\|3904079_3904562_+	STAS domain-containing protein	NA	NA	NA	NA
WP_003090868.1\|3904649_3905573_-	transaldolase	A0A1D8KMI9	Synechococcus_phage	6.5e-12	30.0
WP_016562059.1\|3905652_3906633_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_058836845.1\|3906815_3907931_+\|integrase	site-specific integrase	A0A2K8I325	Pseudomonas_phage	4.8e-118	60.0
WP_058836784.1\|3907904_3908180_-	Pyocin activator protein PrtN	A0A2K8HN48	Pseudomonas_phage	9.8e-25	64.3
WP_124206310.1\|3908972_3909611_+	hypothetical protein	NA	NA	NA	NA
WP_058836786.1\|3909619_3910099_-	hypothetical protein	NA	NA	NA	NA
WP_015649068.1\|3910108_3910348_-	hypothetical protein	NA	NA	NA	NA
WP_058836787.1\|3910344_3910971_-	hypothetical protein	NA	NA	NA	NA
WP_058836788.1\|3911021_3911339_-	transcriptional regulator	NA	NA	NA	NA
WP_058836789.1\|3911335_3911566_-	hypothetical protein	NA	NA	NA	NA
WP_031641970.1\|3911716_3912004_-	DNA-binding protein	NA	NA	NA	NA
WP_031641971.1\|3912013_3912325_-	hypothetical protein	NA	NA	NA	NA
WP_079755203.1\|3912607_3913321_-	helix-turn-helix domain-containing protein	F1C599	Cronobacter_phage	1.2e-21	34.4
WP_058836790.1\|3913427_3913682_+	transcriptional regulator	A0A2H4JA29	uncultured_Caudovirales_phage	6.5e-07	47.1
WP_019726483.1\|3913998_3914553_+	hypothetical protein	NA	NA	NA	NA
WP_058836791.1\|3914545_3914755_+	conjugal transfer protein TraR	NA	NA	NA	NA
WP_058836792.1\|3914718_3916965_+	toprim domain-containing protein	A0A2D1GN57	Marinobacter_phage	1.3e-191	47.5
WP_058836793.1\|3916961_3917333_+	hypothetical protein	NA	NA	NA	NA
WP_019726481.1\|3917905_3918256_+	hypothetical protein	B5TK61	Pseudomonas_phage	2.8e-16	48.6
WP_058836794.1\|3918252_3918990_+	hypothetical protein	A0A1B0Z000	Pseudomonas_phage	6.7e-44	47.1
3918822:3918838	attR	NA	NA	NA	NA
WP_023087718.1\|3919245_3919836_+	hypothetical protein	A0A2H4JG15	uncultured_Caudovirales_phage	8.8e-47	54.5
WP_058164659.1\|3919839_3921855_+\|terminase	phage terminase large subunit family protein	A0A2H4J898	uncultured_Caudovirales_phage	6.6e-259	64.0
WP_004353026.1\|3921866_3922091_+	hypothetical protein	NA	NA	NA	NA
WP_031806273.1\|3922090_3923557_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	5.6e-175	65.8
WP_031806272.1\|3923540_3924713_+\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	1.7e-86	49.1
WP_058836795.1\|3924709_3925345_+\|head	head decoration protein	NA	NA	NA	NA

DBSCAN-SWA_6

3932798 : 3946886

Pseudomonas_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031671092.1\|3932798_3936350_+	hypothetical protein	A0A0M4U447	Ralstonia_phage	2.0e-178	35.1
WP_016561962.1\|3936349_3937351_+	hypothetical protein	NA	NA	NA	NA
WP_058836846.1\|3937347_3938208_+	hypothetical protein	NA	NA	NA	NA
WP_058836797.1\|3938204_3939965_+	hypothetical protein	A0A2I7S8R8	Vibrio_phage	1.2e-25	24.6
WP_003096116.1\|3939964_3940201_+	hypothetical protein	NA	NA	NA	NA
WP_058836798.1\|3940446_3941076_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	1.1e-103	89.0
WP_031629956.1\|3941072_3941441_+	hypothetical protein	A0A0S2SY58	Pseudomonas_phage	4.0e-37	68.9
WP_031629957.1\|3941437_3941698_+	hypothetical protein	H2BDD7	Pseudomonas_virus	2.0e-27	75.6
WP_031629961.1\|3941842_3942646_+	DNA adenine methylase	C7BGE1	Burkholderia_phage	2.7e-99	64.3
WP_031671087.1\|3942759_3943389_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	1.8e-93	84.2
WP_047568371.1\|3944045_3946886_-	transporter substrate-binding domain-containing protein	A0A1V0SGX0	Hokovirus	6.2e-29	25.4

DBSCAN-SWA_7

4217837 : 4224731

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003097631.1\|4217837_4219118_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.2e-98	45.4
WP_058151069.1\|4219119_4220517_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_058151067.1\|4220521_4221496_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_058151064.1\|4221583_4222567_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	4.6e-141	73.7
WP_003119979.1\|4222563_4222899_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.5e-38	69.4
WP_003090391.1\|4222895_4223201_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_012613994.1\|4223200_4223560_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	3.1e-34	61.7
WP_003090387.1\|4223556_4223952_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.7e-47	72.1
WP_003090386.1\|4224062_4224731_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1

DBSCAN-SWA_8

6373483 : 6384579

Pseudomonas_phage(88.89%)

integrase

attL 6373125:6373154|attR 6384863:6384892

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
6373125:6373154	attL	NA	NA	NA	NA
WP_033969043.1\|6373483_6374473_-\|integrase	tyrosine-type recombinase/integrase	Q56VN7	Pseudomonas_phage	1.2e-93	52.4
WP_033969041.1\|6374472_6375765_-	hypothetical protein	Q56VN8	Pseudomonas_phage	8.2e-247	94.0
WP_058836834.1\|6376023_6377286_-	hypothetical protein	Q56VN9	Pseudomonas_phage	7.5e-120	57.0
WP_003159569.1\|6377287_6377638_-	DUF2523 domain-containing protein	Q56VP0	Pseudomonas_phage	5.5e-20	41.1
WP_058836835.1\|6377647_6378235_-	hypothetical protein	NA	NA	NA	NA
WP_058836836.1\|6378890_6379109_-	hypothetical protein	NA	NA	NA	NA
WP_003124954.1\|6379122_6379374_-	hypothetical protein	NA	NA	NA	NA
WP_003115130.1\|6379385_6379478_-	hypothetical protein	Q56VP4	Pseudomonas_phage	7.3e-09	100.0
WP_058836837.1\|6379494_6379929_-	hypothetical protein	Q56VP5	Pseudomonas_phage	1.1e-62	99.3
WP_058836838.1\|6380063_6380441_-	hypothetical protein	Q56VP6	Pseudomonas_phage	2.0e-60	96.8
WP_031635388.1\|6380444_6380735_-	DUF5447 family protein	Q56VP7	Pseudomonas_phage	8.7e-56	97.9
WP_158511590.1\|6380744_6380897_-	hypothetical protein	NA	NA	NA	NA
WP_023086597.1\|6380911_6381127_-	hypothetical protein	NA	NA	NA	NA
WP_079755216.1\|6381239_6381512_+	DNA-binding protein	NA	NA	NA	NA
WP_079755217.1\|6381566_6382259_+	hypothetical protein	NA	NA	NA	NA
WP_079755218.1\|6382714_6383341_-	RloB domain-containing protein	NA	NA	NA	NA
WP_079755219.1\|6383343_6384579_-	ATP-binding protein	V9QJ85	Oenococcus_phage	1.6e-10	31.4
6384863:6384892	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013696

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection