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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013611 Pseudoalteromonas rubra strain SCSIO 6842 chromosome 1, complete sequence 6 crisprs DEDDh,cas3,DinG,csa3,TnsE_C,cas5f,cas7f,cas6f 0 0 312 0
NZ_CP013612 Pseudoalteromonas rubra strain SCSIO 6842 chromosome 2, complete sequence 2 crisprs WYL,DEDDh,csa3,cas3,DinG,cas5,cas8c,cas7,cas4,cas1,cas2 0 2 0 0
NZ_CP013613 Pseudoalteromonas rubra strain SCSIO 6842 plasmid pMBL6842, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP013611
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013611_1 101938-102057 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013611_2 949531-949626 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013611_3 1025361-1025493 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013611_4 3061572-3061680 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013611_5 4067601-4067726 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013611_6 4482045-4482134 Unclear NA
1 spacers
cas6f,cas7f,cas5f

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 24013 20 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_2 28961 : 29171 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_3 37496 : 39428 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_4 46645 : 47842 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_5 51065 : 51728 1 Acaryochloris_phage(100.0%) NA NA
DBSCAN-SWA_6 56350 : 59117 6 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_7 68872 : 70345 1 Cyanophage(100.0%) NA NA
DBSCAN-SWA_8 77567 : 80200 2 Hubei_virga-like_virus(50.0%) protease NA
DBSCAN-SWA_9 84315 : 88469 4 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_10 92902 : 93871 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_11 108662 : 111580 3 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_12 120560 : 124796 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_13 130061 : 131285 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_14 136077 : 137961 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_15 155356 : 164022 3 Rhodococcus_phage(33.33%) transposase NA
DBSCAN-SWA_16 185475 : 189018 3 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_17 203008 : 203683 1 Feldmannia_irregularis_virus(100.0%) NA NA
DBSCAN-SWA_18 210656 : 212254 2 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_19 215816 : 217270 2 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_20 221674 : 224173 3 Bodo_saltans_virus(50.0%) protease NA
DBSCAN-SWA_21 232582 : 235726 1 Leptospira_phage(100.0%) NA NA
DBSCAN-SWA_22 246924 : 255560 7 uncultured_Caudovirales_phage(33.33%) tRNA NA
DBSCAN-SWA_23 271974 : 273099 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_24 277096 : 277795 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_25 283673 : 293524 9 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_26 298744 : 307986 9 Lake_Baikal_phage(20.0%) protease,tRNA NA
DBSCAN-SWA_27 312352 : 313867 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_28 319214 : 320228 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_29 333874 : 339172 3 Erwinia_phage(50.0%) NA NA
DBSCAN-SWA_30 368369 : 369395 1 Micromonas_sp._RCC1109_virus(100.0%) NA NA
DBSCAN-SWA_31 375556 : 376093 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_32 379480 : 380956 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_33 411400 : 420250 8 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_34 424069 : 430601 3 Moraxella_phage(50.0%) NA NA
DBSCAN-SWA_35 447560 : 459371 5 Tupanvirus(25.0%) NA NA
DBSCAN-SWA_36 464855 : 466475 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_37 477379 : 478516 1 Halovirus(100.0%) NA NA
DBSCAN-SWA_38 498377 : 505335 6 Bacillus_virus(33.33%) tRNA NA
DBSCAN-SWA_39 512422 : 513931 1 Cyanophage(100.0%) NA NA
DBSCAN-SWA_40 524338 : 525238 1 Ectromelia_virus(100.0%) NA NA
DBSCAN-SWA_41 535768 : 538931 3 Organic_Lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_42 572113 : 573391 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_43 577113 : 578339 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_44 587260 : 600258 20 Burkholderia_phage(30.0%) head,transposase NA
DBSCAN-SWA_45 608464 : 617817 12 Pseudomonas_phage(75.0%) NA NA
DBSCAN-SWA_46 621673 : 632223 4 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_47 658072 : 659404 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_48 666798 : 667272 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_49 686321 : 687107 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_50 692139 : 705994 12 uncultured_Mediterranean_phage(14.29%) tRNA NA
DBSCAN-SWA_51 714277 : 715167 2 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_52 720112 : 725175 4 Klosneuvirus(33.33%) tRNA NA
DBSCAN-SWA_53 733949 : 734240 1 Geobacillus_virus(100.0%) NA NA
DBSCAN-SWA_54 738259 : 747795 7 Pseudoalteromonas_phage(40.0%) NA NA
DBSCAN-SWA_55 754928 : 763070 6 Vibrio_phage(33.33%) NA NA
DBSCAN-SWA_56 769073 : 769715 1 Orpheovirus(100.0%) NA NA
DBSCAN-SWA_57 774394 : 776617 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_58 781532 : 786260 3 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_59 791763 : 797507 4 Tupanvirus(50.0%) tRNA NA
DBSCAN-SWA_60 803249 : 812724 4 Hepacivirus(33.33%) NA NA
DBSCAN-SWA_61 817153 : 818356 1 Enterobacteria_phage(100.0%) transposase NA
DBSCAN-SWA_62 828986 : 831506 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_63 835245 : 837822 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_64 848904 : 849540 1 Ralstonia_phage(100.0%) NA NA
DBSCAN-SWA_65 856058 : 856841 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_66 878003 : 879365 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_67 892725 : 903479 13 Enterobacteria_phage(50.0%) transposase NA
DBSCAN-SWA_68 907764 : 908724 1 Virus_Rctr41k(100.0%) integrase attL 902885:902897|attR 909208:909220
DBSCAN-SWA_69 911745 : 913407 1 Escherichia_phage(100.0%) tRNA NA
DBSCAN-SWA_70 930547 : 937313 8 environmental_halophage(33.33%) tRNA NA
DBSCAN-SWA_71 941897 : 942788 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_72 950878 : 959526 7 Pike_perch_iridovirus(33.33%) NA NA
DBSCAN-SWA_73 966665 : 970352 1 Salmon_gill_poxvirus(100.0%) NA NA
DBSCAN-SWA_74 975579 : 980984 4 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_75 988417 : 989876 2 Canarypox_virus(50.0%) NA NA
DBSCAN-SWA_76 1000557 : 1005013 3 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_77 1019871 : 1024445 4 Saccharomonospora_phage(33.33%) tRNA NA
DBSCAN-SWA_78 1033167 : 1048035 13 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_79 1051634 : 1059793 6 uncultured_Mediterranean_phage(33.33%) transposase NA
DBSCAN-SWA_80 1064322 : 1067499 1 Leptospira_phage(100.0%) NA NA
DBSCAN-SWA_81 1084071 : 1087113 2 Bacteriophage(50.0%) NA NA
DBSCAN-SWA_82 1101641 : 1102985 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_83 1107222 : 1108512 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_84 1113233 : 1117082 3 Golden_Marseillevirus(50.0%) NA NA
DBSCAN-SWA_85 1136320 : 1137235 1 Enterobacteria_phage(100.0%) transposase NA
DBSCAN-SWA_86 1142370 : 1143078 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_87 1146889 : 1148703 2 Hokovirus(50.0%) NA NA
DBSCAN-SWA_88 1173662 : 1175375 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_89 1183031 : 1184036 1 Enterobacter_phage(100.0%) NA NA
DBSCAN-SWA_90 1201119 : 1202616 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_91 1213423 : 1213939 1 Rhizobium_phage(100.0%) NA NA
DBSCAN-SWA_92 1219465 : 1220311 1 Leptospira_phage(100.0%) NA NA
DBSCAN-SWA_93 1236321 : 1237514 2 Ralstonia_phage(50.0%) NA NA
DBSCAN-SWA_94 1252635 : 1253652 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_95 1264447 : 1269900 2 Virus_Rctr197k(50.0%) NA NA
DBSCAN-SWA_96 1273341 : 1274370 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_97 1282794 : 1287889 5 uncultured_virus(33.33%) tRNA NA
DBSCAN-SWA_98 1302207 : 1308989 5 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_99 1324915 : 1329352 4 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_100 1338284 : 1341698 3 Yellowstone_lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_101 1353239 : 1363330 9 Bacillus_thuringiensis_phage(50.0%) NA NA
DBSCAN-SWA_102 1369419 : 1369827 1 Ralstonia_phage(100.0%) NA NA
DBSCAN-SWA_103 1377817 : 1383304 4 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_104 1392712 : 1393510 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_105 1401503 : 1404077 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_106 1417876 : 1420705 1 Klosneuvirus(100.0%) tRNA NA
DBSCAN-SWA_107 1432620 : 1455774 13 Acinetobacter_phage(33.33%) NA NA
DBSCAN-SWA_108 1469538 : 1474455 4 Hokovirus(50.0%) NA NA
DBSCAN-SWA_109 1485466 : 1488019 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_110 1491342 : 1492839 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_111 1503679 : 1505266 2 Mimivirus(50.0%) NA NA
DBSCAN-SWA_112 1509340 : 1512028 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_113 1531181 : 1534108 2 Sinorhizobium_phage(50.0%) NA NA
DBSCAN-SWA_114 1540928 : 1542995 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_115 1550246 : 1552835 1 Staphylococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_116 1558914 : 1560896 2 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_117 1565887 : 1567090 1 Cotesia_sesamiae_Mombasa_bracovirus(100.0%) NA NA
DBSCAN-SWA_118 1574739 : 1579339 7 Tupanvirus(66.67%) NA NA
DBSCAN-SWA_119 1585050 : 1585449 1 Ostreococcus_lucimarinus_virus(100.0%) NA NA
DBSCAN-SWA_120 1599019 : 1600399 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_121 1603759 : 1605286 1 Mollivirus(100.0%) NA NA
DBSCAN-SWA_122 1634429 : 1635677 2 Bradyrhizobium_phage(50.0%) NA NA
DBSCAN-SWA_123 1646006 : 1646852 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_124 1654606 : 1656343 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_125 1662012 : 1667391 6 Staphylococcus_phage(20.0%) NA NA
DBSCAN-SWA_126 1675082 : 1676876 2 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_127 1681934 : 1683569 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_128 1689596 : 1690115 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_129 1719486 : 1722414 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_130 1726912 : 1736725 9 Pseudomonas_phage(25.0%) tRNA NA
DBSCAN-SWA_131 1744864 : 1754608 10 Tupanvirus(40.0%) tRNA NA
DBSCAN-SWA_132 1760243 : 1761680 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_133 1774450 : 1775140 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_134 1783891 : 1799061 6 uncultured_Caudovirales_phage(25.0%) NA NA
DBSCAN-SWA_135 1825815 : 1827507 1 Bathycoccus_sp._RCC1105_virus(100.0%) NA NA
DBSCAN-SWA_136 1831346 : 1835621 6 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_137 1845542 : 1848451 2 Diachasmimorpha_longicaudata_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_138 1851659 : 1852874 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_139 1861074 : 1863795 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_140 1874993 : 1875665 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_141 1886996 : 1887689 1 Bodo_saltans_virus(100.0%) tRNA NA
DBSCAN-SWA_142 1891485 : 1893596 2 Burkholderia_phage(50.0%) tRNA NA
DBSCAN-SWA_143 1901089 : 1902712 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_144 1919584 : 1920499 1 Enterobacteria_phage(100.0%) transposase NA
DBSCAN-SWA_145 1924200 : 1927631 3 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_146 1948411 : 1951941 2 Klosneuvirus(50.0%) tRNA NA
DBSCAN-SWA_147 1962530 : 1971019 9 Chrysochromulina_ericina_virus(20.0%) tRNA NA
DBSCAN-SWA_148 1975511 : 1976759 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_149 1981104 : 1983548 2 Pithovirus(50.0%) protease NA
DBSCAN-SWA_150 1987449 : 1990692 2 Wolbachia_phage(50.0%) NA NA
DBSCAN-SWA_151 1993864 : 1997080 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_152 2009997 : 2012384 3 Powai_lake_megavirus(33.33%) tRNA NA
DBSCAN-SWA_153 2015568 : 2016351 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_154 2019443 : 2021945 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_155 2025151 : 2030959 5 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_156 2040411 : 2041104 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_157 2055552 : 2058795 1 Liberibacter_phage(100.0%) NA NA
DBSCAN-SWA_158 2062170 : 2068322 5 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_159 2083887 : 2085702 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_160 2090987 : 2093651 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_161 2098304 : 2108992 9 Klosneuvirus(25.0%) NA NA
DBSCAN-SWA_162 2112417 : 2126246 15 Moraxella_phage(16.67%) tRNA NA
DBSCAN-SWA_163 2131800 : 2132418 1 Virus_Rctr197k(100.0%) NA NA
DBSCAN-SWA_164 2136716 : 2142985 3 Feldmannia_irregularis_virus(33.33%) NA NA
DBSCAN-SWA_165 2146773 : 2147694 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_166 2157237 : 2160664 3 Murmansk_poxvirus(50.0%) NA NA
DBSCAN-SWA_167 2169037 : 2249172 70 Bacillus_phage(15.79%) tRNA,transposase NA
DBSCAN-SWA_168 2267744 : 2269814 1 Cafeteria_roenbergensis_virus(100.0%) NA NA
DBSCAN-SWA_169 2292141 : 2295126 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_170 2305171 : 2306371 1 Methanothermobacter_phage(100.0%) NA NA
DBSCAN-SWA_171 2310070 : 2312260 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_172 2321253 : 2322270 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_173 2326365 : 2335281 6 Lactococcus_phage(20.0%) NA NA
DBSCAN-SWA_174 2348511 : 2350203 1 Heterosigma_akashiwo_virus(100.0%) NA NA
DBSCAN-SWA_175 2356628 : 2358626 2 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_176 2370849 : 2380066 5 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_177 2388258 : 2397079 7 Ostreococcus_lucimarinus_virus(33.33%) NA NA
DBSCAN-SWA_178 2417261 : 2420405 1 Leptospira_phage(100.0%) NA NA
DBSCAN-SWA_179 2437790 : 2438297 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_180 2444759 : 2446400 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_181 2456370 : 2475786 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_182 2485845 : 2491077 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_183 2499461 : 2501009 1 Micromonas_sp._RCC1109_virus(100.0%) NA NA
DBSCAN-SWA_184 2541526 : 2542393 1 Heterosigma_akashiwo_virus(100.0%) NA NA
DBSCAN-SWA_185 2547421 : 2549344 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_186 2566588 : 2567773 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_187 2575360 : 2577517 1 Ectocarpus_siliculosus_virus(100.0%) NA NA
DBSCAN-SWA_188 2581259 : 2584568 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_189 2595669 : 2601786 7 Tetraselmis_virus(33.33%) NA NA
DBSCAN-SWA_190 2606525 : 2608613 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_191 2614960 : 2622599 6 Vibrio_phage(33.33%) NA NA
DBSCAN-SWA_192 2626277 : 2626985 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_193 2642057 : 2644016 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_194 2657404 : 2659633 1 Lake_Baikal_phage(100.0%) NA NA
DBSCAN-SWA_195 2679334 : 2681335 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_196 2685682 : 2686696 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_197 2694668 : 2697759 2 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_198 2712997 : 2717698 4 Paramecium_bursaria_Chlorella_virus(50.0%) transposase NA
DBSCAN-SWA_199 2732137 : 2741630 5 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_200 2750018 : 2766456 3 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_201 2784204 : 2785959 2 Gordonia_phage(50.0%) NA NA
DBSCAN-SWA_202 2799255 : 2799531 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_203 2802543 : 2807191 3 Rhizobium_phage(50.0%) NA NA
DBSCAN-SWA_204 2811290 : 2811530 1 Dickeya_phage(100.0%) NA NA
DBSCAN-SWA_205 2818805 : 2819423 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_206 2825445 : 2833686 9 Prochlorococcus_phage(25.0%) tRNA NA
DBSCAN-SWA_207 2855158 : 2857879 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_208 2865310 : 2868662 3 Indivirus(33.33%) NA NA
DBSCAN-SWA_209 2882041 : 2888430 5 Acinetobacter_phage(33.33%) NA NA
DBSCAN-SWA_210 2898636 : 2899581 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_211 2912772 : 2927583 10 Bacillus_phage(20.0%) NA NA
DBSCAN-SWA_212 2936985 : 2940213 2 Microcystis_phage(50.0%) NA NA
DBSCAN-SWA_213 2960788 : 2961850 1 Ectocarpus_siliculosus_virus(100.0%) NA NA
DBSCAN-SWA_214 2970754 : 2974012 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_215 2987568 : 2991681 2 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_216 3000159 : 3003847 3 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_217 3010256 : 3011480 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_218 3024715 : 3025546 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_219 3028785 : 3029439 1 Aeromonas_virus(100.0%) NA NA
DBSCAN-SWA_220 3038726 : 3044029 5 Diadromus_pulchellus_ascovirus(33.33%) NA NA
DBSCAN-SWA_221 3060795 : 3061341 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_222 3069900 : 3076359 6 Escherichia_phage(33.33%) NA NA
DBSCAN-SWA_223 3079451 : 3083237 3 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_224 3091478 : 3104305 6 Chrysochromulina_ericina_virus(25.0%) NA NA
DBSCAN-SWA_225 3112243 : 3115885 3 Shigella_phage(50.0%) NA NA
DBSCAN-SWA_226 3121726 : 3122089 1 Bacillus_thuringiensis_phage(100.0%) NA NA
DBSCAN-SWA_227 3141961 : 3151337 8 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_228 3186678 : 3194843 7 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_229 3202575 : 3203619 1 Organic_Lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_230 3217204 : 3225717 11 Corynebacterium_phage(20.0%) NA NA
DBSCAN-SWA_231 3229637 : 3232345 2 uncultured_Mediterranean_phage(100.0%) protease NA
DBSCAN-SWA_232 3239113 : 3239563 1 Pseudomonas_phage(100.0%) protease NA
DBSCAN-SWA_233 3243315 : 3252110 6 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_234 3267153 : 3267963 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_235 3274429 : 3279907 5 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_236 3293281 : 3294055 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_237 3316189 : 3317110 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_238 3322387 : 3322870 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_239 3334247 : 3336119 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_240 3346273 : 3347002 1 Trichoplusia_ni_ascovirus(100.0%) NA NA
DBSCAN-SWA_241 3362569 : 3366732 5 Indivirus(50.0%) NA NA
DBSCAN-SWA_242 3391127 : 3399464 6 uncultured_Mediterranean_phage(75.0%) tRNA NA
DBSCAN-SWA_243 3404683 : 3406315 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_244 3411291 : 3415142 3 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_245 3418327 : 3426863 7 Prochlorococcus_phage(25.0%) tRNA NA
DBSCAN-SWA_246 3430438 : 3433291 3 Cedratvirus(50.0%) NA NA
DBSCAN-SWA_247 3437757 : 3441977 3 Klosneuvirus(33.33%) NA NA
DBSCAN-SWA_248 3448238 : 3454391 8 Orpheovirus(25.0%) tRNA NA
DBSCAN-SWA_249 3459994 : 3461932 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_250 3467095 : 3469249 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_251 3484443 : 3487246 2 Vibrio_phage(50.0%) transposase NA
DBSCAN-SWA_252 3510627 : 3515029 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_253 3520467 : 3527965 4 Hokovirus(33.33%) tRNA NA
DBSCAN-SWA_254 3535941 : 3537798 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_255 3553680 : 3555351 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_256 3574634 : 3575561 1 Morganella_phage(100.0%) NA NA
DBSCAN-SWA_257 3579748 : 3584025 2 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_258 3588639 : 3589347 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_259 3595795 : 3597292 1 Xanthomonas_phage(100.0%) NA NA
DBSCAN-SWA_260 3604286 : 3610538 4 Pandoravirus(33.33%) tRNA NA
DBSCAN-SWA_261 3618754 : 3625163 6 Prochlorococcus_phage(33.33%) NA NA
DBSCAN-SWA_262 3632562 : 3633576 1 Moraxella_phage(100.0%) tRNA NA
DBSCAN-SWA_263 3641051 : 3642083 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_264 3645085 : 3646315 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_265 3650373 : 3663205 10 Bacillus_phage(20.0%) NA NA
DBSCAN-SWA_266 3668110 : 3668713 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_267 3679063 : 3679861 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_268 3686199 : 3688369 3 Equid_alphaherpesvirus(50.0%) NA NA
DBSCAN-SWA_269 3691972 : 3693205 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_270 3698592 : 3699210 1 Cafeteria_roenbergensis_virus(100.0%) tail NA
DBSCAN-SWA_271 3718754 : 3719501 1 Diadromus_pulchellus_ascovirus(100.0%) NA NA
DBSCAN-SWA_272 3742359 : 3743442 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_273 3751139 : 3756041 5 Tupanvirus(50.0%) tRNA NA
DBSCAN-SWA_274 3761322 : 3762177 1 Cafeteria_roenbergensis_virus(100.0%) NA NA
DBSCAN-SWA_275 3766148 : 3774308 3 uncultured_Caudovirales_phage(33.33%) NA NA
DBSCAN-SWA_276 3781940 : 3783962 1 Serratia_phage(100.0%) NA NA
DBSCAN-SWA_277 3790498 : 3797382 5 Salmonella_phage(50.0%) NA NA
DBSCAN-SWA_278 3802409 : 3803042 1 Aeropyrum_pernix_spindle-shaped_virus(100.0%) NA NA
DBSCAN-SWA_279 3829027 : 3837801 6 Enterococcus_phage(20.0%) protease NA
DBSCAN-SWA_280 3844228 : 3844906 1 Aeromonas_phage(100.0%) NA NA
DBSCAN-SWA_281 3853306 : 3920493 14 Tupanvirus(70.0%) NA NA
DBSCAN-SWA_282 3932095 : 3936281 2 Hokovirus(50.0%) NA NA
DBSCAN-SWA_283 3939348 : 3949837 9 Only_Syngen_Nebraska_virus(25.0%) NA NA
DBSCAN-SWA_284 3960534 : 3964025 6 Gordonia_phage(50.0%) NA NA
DBSCAN-SWA_285 3978915 : 3979830 1 Enterobacteria_phage(100.0%) transposase NA
DBSCAN-SWA_286 3986435 : 3999726 9 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_287 4005700 : 4006903 1 Enterobacteria_phage(100.0%) transposase NA
DBSCAN-SWA_288 4012929 : 4013658 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_289 4037294 : 4048504 6 uncultured_Mediterranean_phage(25.0%) NA NA
DBSCAN-SWA_290 4062235 : 4175378 107 Wolbachia_phage(13.16%) plate,integrase,protease,tail attL 4060416:4060432|attR 4091534:4091550
DBSCAN-SWA_291 4180484 : 4182791 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_292 4185910 : 4189087 1 Streptomyces_phage(100.0%) NA NA
DBSCAN-SWA_293 4224987 : 4231913 5 Enterobacteria_phage(50.0%) transposase NA
DBSCAN-SWA_294 4241394 : 4242501 1 Listeria_phage(100.0%) NA NA
DBSCAN-SWA_295 4245580 : 4247065 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_296 4298677 : 4302852 2 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_297 4317881 : 4318847 1 Sulfitobacter_phage(100.0%) NA NA
DBSCAN-SWA_298 4335264 : 4341845 6 Bacillus_virus(25.0%) NA NA
DBSCAN-SWA_299 4347530 : 4348562 1 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_300 4354439 : 4356033 2 Yellowstone_lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_301 4360803 : 4365736 4 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_302 4391231 : 4391615 1 Bacillus_thuringiensis_phage(100.0%) NA NA
DBSCAN-SWA_303 4395940 : 4401045 6 Natrialba_phage(50.0%) NA NA
DBSCAN-SWA_304 4407761 : 4408385 1 Pithovirus(100.0%) NA NA
DBSCAN-SWA_305 4424229 : 4425105 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_306 4440087 : 4440861 1 Flavobacterium_phage(100.0%) NA NA
DBSCAN-SWA_307 4450873 : 4458763 6 Cafeteria_roenbergensis_virus(33.33%) tRNA NA
DBSCAN-SWA_308 4469226 : 4470141 1 Enterobacteria_phage(100.0%) transposase NA
DBSCAN-SWA_309 4475935 : 4476622 1 Natrialba_phage(100.0%) NA NA
DBSCAN-SWA_310 4484609 : 4485524 1 Enterobacteria_phage(100.0%) transposase NA
DBSCAN-SWA_311 4514217 : 4515363 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_312 4522140 : 4524842 3 Enterobacteria_phage(100.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP013612
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013612_1 1081540-1083078 TypeI I-C
23 spacers
cas3,cas5,cas8c,cas7,cas4,cas1,cas2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013612_2 1091828-1092976 TypeI I-C
17 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP013612_1 1.16|1082552|33|NZ_CP013612|PILER-CR,CRISPRCasFinder,CRT 1082552-1082584 33 MN094788 Achromobacter phage Motura, complete genome 182335-182367 9 0.727
NZ_CP013612_1 1.2|1081637|34|NZ_CP013612|PILER-CR,CRISPRCasFinder,CRT 1081637-1081670 34 NZ_CP015882 Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence 144785-144818 10 0.706
NZ_CP013612_1 1.2|1081637|34|NZ_CP013612|PILER-CR,CRISPRCasFinder,CRT 1081637-1081670 34 NZ_CP030264 Ensifer adhaerens strain Corn53 plasmid AB, complete sequence 815457-815490 10 0.706

1. spacer 1.16|1082552|33|NZ_CP013612|PILER-CR,CRISPRCasFinder,CRT matches to MN094788 (Achromobacter phage Motura, complete genome) position: , mismatch: 9, identity: 0.727

gccattgattgatagttctcaatcatgaaatga	CRISPR spacer
gccactgcttgatagttctcaatcaaatccggc	Protospacer
****.** ***************** .    * 

2. spacer 1.2|1081637|34|NZ_CP013612|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 10, identity: 0.706

cgagcagtcgatgcgcaaacgcatgtcctgaatt--	CRISPR spacer
cgagcagtcgctgcgcgaacgca--tcgcagaccgc	Protospacer
********** *****.******  ** ...*..  

3. spacer 1.2|1081637|34|NZ_CP013612|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 10, identity: 0.706

cgagcagtcgatgcgcaaacgcatgtcctgaatt--	CRISPR spacer
cgagcagtcgctgcgcgaacgca--tcgcagaccgc	Protospacer
********** *****.******  ** ...*..  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage