CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013183	Pseudomonas syringae pv. lapsa strain ATCC 10859 chromosome, complete genome	2 crisprs	DEDDh,PD-DExK,csa3,cas3,DinG,WYL	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013183_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013183_1

383965-384106

Orphan

Consensus_repeat	Method
GTACAACGCCAAGCGCTTCAGCGTTGGGGCGCATGTCGTCATCAAATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013183_1

>merge|NZ_CP013183|1|383965-384106|CRISPRCasFinder
GTACAACGCCAAGCGCTTCAGCGTTGGGGCGCATGTCGTCATCAAATACGGCGGCGTGCCGTCCCCGGCAGCGCCTCGCTCCCACAAAGCCTGCGTACAACGCCAAGCGCTTCAGCGTGGGGGCGCATGTCGTCATCAAATA

>NZ_CP013183|1|1|383965-384106|CRISPRCasFinder
GTACAACGCCAAGCGCTTCAGCGTTGGGGCGCATGTCGTCATCAAATA	CGGCGGCGTGCCGTCCCCGGCAGCGCCTCGCTCCCACAAAGCCTGC
GTACAACGCCAAGCGCTTCAGCGTGGGGGCGCATGTCGTCATCAAATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013183.1\|WP_057406570.1\|375862_376948_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP013183.1\|WP_003341471.1\|390989_391658_-\|cystine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|185055
NZ_CP013183.1\|WP_003341466.1\|393868_394822_+\|serine-acetyltransferase	unknown	unknown	gnl\|CDD\|200082
NZ_CP013183.1\|WP_044312634.1\|384645_386004_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274819
NZ_CP013183.1\|WP_057406571.1\|376944_380046_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP013183.1\|WP_057406572.1\|381429_382560_-\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236863
NZ_CP013183.1\|WP_057406573.1\|382556_383345_-\|methionine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP013183.1\|WP_057406568.1\|371823_372771_+\|RHS-repeat-associated-core-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730
NZ_CP013183.1\|WP_003341491.1\|380795_381440_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP013183.1\|WP_057406754.1\|387234_388422_-\|SfnB-family-sulfur-acquisition-oxidoreductase	unknown	unknown	gnl\|CDD\|274924
NZ_CP013183.1\|WP_003392437.1\|380115_380739_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NZ_CP013183.1\|WP_003341510.1\|369984_371004_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372585
NZ_CP013183.1\|WP_003392419.1\|394834_395542_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227648
NZ_CP013183.1\|WP_003341469.1\|391654_392452_-\|cystine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|183061
NZ_CP013183.1\|WP_003392450.1\|371497_371713_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013183.1\|WP_057406748.1\|392672_393671_-\|D-cysteine-desulfhydrase	unknown	unknown	gnl\|CDD\|179673
NZ_CP013183.1\|WP_003430232.1\|388945_389665_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013183.1\|WP_044312640.1\|374747_375866_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP013183.1\|WP_024661619.1\|390242_390986_-\|L-cystine-ABC-transporter-ATP-binding-protein-YecC	unknown	unknown	gnl\|CDD\|183063
NZ_CP013183.1\|WP_024682625.1\|386003_387209_-\|SfnB-family-sulfur-acquisition-oxidoreductase	unknown	unknown	gnl\|CDD\|274924

Protein	Function_ID	Function_description	E-value
NZ_CP013183.1\|WP_057406570.1\|375862_376948_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	3.80843e-70
NZ_CP013183.1\|WP_003341471.1\|390989_391658_-\|cystine-ABC-transporter-permease	gnl\|CDD\|185055	PRK15100, PRK15100, cystine ABC transporter permease.	4.07307e-147
NZ_CP013183.1\|WP_003341466.1\|393868_394822_+\|serine-acetyltransferase	gnl\|CDD\|200082	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase. Cysteine biosynthesis [Amino acid biosynthesis, Serine family].	2.74859e-57
NZ_CP013183.1\|WP_044312634.1\|384645_386004_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP013183.1\|WP_057406571.1\|376944_380046_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP013183.1\|WP_057406572.1\|381429_382560_-\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	7.46802e-158
NZ_CP013183.1\|WP_057406573.1\|382556_383345_-\|methionine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	7.46846e-87
NZ_CP013183.1\|WP_057406568.1\|371823_372771_+\|RHS-repeat-associated-core-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	1.95454e-29
NZ_CP013183.1\|WP_003341491.1\|380795_381440_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	5.35039e-101
NZ_CP013183.1\|WP_057406754.1\|387234_388422_-\|SfnB-family-sulfur-acquisition-oxidoreductase	gnl\|CDD\|274924	TIGR04022, Acyl-CoA_dehydrogenase_type_2_domain, sulfur acquisition oxidoreductase, SfnB family. Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family. [Central intermediary metabolism, Sulfur metabolism].	0
NZ_CP013183.1\|WP_003392437.1\|380115_380739_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.12952e-20
NZ_CP013183.1\|WP_003341510.1\|369984_371004_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|372585	pfam13379, NMT1_2, NMT1-like family. This family is closely related to the pfam09084 family.	7.92112e-34
NZ_CP013183.1\|WP_003392419.1\|394834_395542_-\|hypothetical-protein	gnl\|CDD\|227648	COG5343, COG5343, Uncharacterized protein conserved in bacteria [Function unknown].	2.94796e-34
NZ_CP013183.1\|WP_003341469.1\|391654_392452_-\|cystine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|183061	PRK11260, PRK11260, cystine ABC transporter substrate-binding protein.	9.64342e-177
NZ_CP013183.1\|WP_044312640.1\|374747_375866_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.31903e-60
NZ_CP013183.1\|WP_057406748.1\|392672_393671_-\|D-cysteine-desulfhydrase	gnl\|CDD\|179673	PRK03910, PRK03910, D-cysteine desulfhydrase; Validated.	4.11214e-180
NZ_CP013183.1\|WP_024661619.1\|390242_390986_-\|L-cystine-ABC-transporter-ATP-binding-protein-YecC	gnl\|CDD\|183063	PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional.	1.26659e-173
NZ_CP013183.1\|WP_024682625.1\|386003_387209_-\|SfnB-family-sulfur-acquisition-oxidoreductase	gnl\|CDD\|274924	TIGR04022, Acyl-CoA_dehydrogenase_type_2_domain, sulfur acquisition oxidoreductase, SfnB family. Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family. [Central intermediary metabolism, Sulfur metabolism].	0

>NZ_CP013183.1|WP_057406573.1|382556_383345_-|methionine-ABC-transporter-substrate-binding-protein
MSKTLAALALGLLTLTAYADDKPLKVGTTAAFAIPLEAAVEEAGKQGLKVELVEFTDWIAPNVSLAAGDIDVNYFQHIPFLTNANEAAGFGLVPYAPGIINNVGLYSKKYKSFDELPTGATVAIANDPINSGRGLQLLAKAGLITLKEGVGYKATEEDITANPKKLKLIQVEAVQLVRAYDDADLVQGYPAYIRLAKTFPADSAILFDGMDHPEYVIQFVIKPDHKDDPRLAKFVDIYQHSPLVRASLDKVNGKLYQAGWKE
>NZ_CP013183.1|WP_057406572.1|381429_382560_-|methionine-ABC-transporter-ATP-binding-protein
MTATAQRQRPLDIAGAGQRAQQAELHPELNRAHVRFINLGKTYHGKQGPVEALGNIDLAVQRGEIFGIIGRSGAGKSSLIRTINRLEQPSSGRVLIDQVDIGEFDEDKLVELRRRIGMIFQHFNLMSAKTVWQNVELPLKVAGVPKEQRARKVAQLLELVGLQDKHKAYPAQLSGGQKQRVGIARALVHDPAILLCDEATSALDPETTQSILGLLREINQRLGLTIVLITHEMAVIRDICHRVVVLEQGRVVEQGPVWQVFGDPQHDVSKTLLAPLQTGLPKEWAERLSDQPQRPDAALLLDVHFTGVSDEGPDLAALFAALGGKVQLLQGGVERIQERAIGHLILSVAGSPHSRDELLTRARTLAPRAEVLGYVG
>NZ_CP013183.1|WP_003341491.1|380795_381440_-|ABC-transporter-permease
MWVDRLLQGTLDTFLMVGVSSLIALLLGIPLAVILVTSSKGGIYEAPGINRVLGGFVNLFRSIPFLILMVALIPFTRMIVGTTYGVWAAVVPLTIAATPFFARIAEVSLREVDHGLVEAAQAMGCRRWHIIWHVLLPEARPGIVGGFTITLVTMINSSAMAGAIGAGGLGDIAYRYGYQRFDTQVMLTVIVLLVAVVALVQLGGDRLARSFDRR
>NZ_CP013183.1|WP_003392437.1|380115_380739_-|methyltransferase-domain-containing-protein
MKLDPQTLAQITAATLGNYNSVADDFREGTRDHDVSQNIDALLRHIEGPAPWQILDFGCGPGRDLKAFTAMGHVAVGLDGSERFAEMARAETGCEVLQQNFLELDLPHGRFDGLFANAVLFHIPKQELPRVLRQLHATLKPGGVLFSSNPRGENQEGWNGERYGAYHDLESWRELLTEAGFVELEHYYRPAGLPREQQPWLASVWRR
>NZ_CP013183.1|WP_057406571.1|376944_380046_+|efflux-RND-transporter-permease-subunit
MKGNFNLSEWAIKHQSFVWYLMFVALLMGVFSYMKLGREEDPSFTIKTMIIQTRWPGATVDETLEQVTDRIEKKLEELDSLDYVKSYTRPGESTVFVYLRDTTNAKAIPEIWYQVRKKVDDIRGQFPQGLQGPSFNDEFGDVYGSIYAFTADGFSMRQLRDYVEKVRADIRDVPGLGKVEMIGQQDEVVYLNFSTRKLAALGIDQSQVVQSLQSQNAVTPAGVIEAGPERISVRTSGQFASEKDLAAVNLRINDRFYRLSDIADITRGYTDPPKPLFRFDGKPAIGLAIAMQKGGNIQSFGKALHAQMDATTAELPVGIGVHKVSDQAEVVNKAVGGFTSALFEAVIIVLLVSFVSLGFRAGLVVACSIPLVLAMVFVFMEYSGITMQRISLGALIIALGLLVDDAMITVEMMVTRLEMGESKEQAATYAYTSTAFPMLTGTLVTVAGFVPIGLNNSSAGEYTFTLFAVIAVAMLVSWVVAVLFAPVIGVHILSANIKPKSEEPGRIGRAFNGSMLWAMRHRWLAIAITVGLFAASLFSMQFVQNQFFPSSDRPEILVDLNLPQSASINETRKVVDRFEASLKDDPDIERWSTYIGQGALRFYLPLDQQLENPFYAQLVIVSKGLEERGALTARLQKRLRDDFVGIGSYVQALEMGPPVGRPLQYRVSGENIDKVRQHAIELATLLDHNPHVGEVIYDWNEPGKVLRIDINQDKARQLGLSSEDVAKLMNSVVSGSTVTQVRDDIYLINVVGRAEDAERGTPETLQNLQIVTPTGTSIPLLAFATVGYELEQPLVWRRDRKPTITVKGAVRDAIQPTDLVKQLQPEIDKFAAGLPVGYKVTTGGTVEESSKAQGPIASVAPLMLFLMATFLMIQLHSIQKMFLVASVAPLGLIGVVLALIPTGTPLGFVAILGVLALIGIIIRNSVILVTQIDAYEKSGYLPWDAVVEATEHRRRPILLTAAAASLGMIPIAREVFWGPMAYAMIGGIIIATLLTLLFLPALYVAWYRIKEPTDEQRQEAEEKNEDENAQPAH
>NZ_CP013183.1|WP_057406570.1|375862_376948_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKRMSCLPLGGLLLSGFLLSGCGKDETPPEPVRPVVFVEAKPESNQDFGRFAGNIQARYQSVLGFRVAGRIARRDVDVGAEVKKGDLLATLDPTDQQNAVRARQGDLANVQAQFINAQANARRQQELFDRGVGAQAQLDIALTDLKTASSSQEQAKAAAQQARDQLSYSELRSDHDAVVTEWKVEAGQVVTAGQEVVTLARPDIKEAVIDLPDTLAEQLPADVVFTVASQLNPEVNTTATIREIEPQADRTTRTRRARLSLAQTPAAFRLGTAISVTLSSTITPRMRLPINALQEVDGKLQVWIVDSQSQTVNPRAVTIASRDSDSFVLTDGVKAGEKVVSAGVNSLKPGQKVKVDEESPR
>NZ_CP013183.1|WP_044312640.1|374747_375866_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MPVRISRLVTFGLAAALAALAGCGEEKPAAPELPRVYVQTVKSADFAASVALTGDVQARVQTRLSFRVNGKIIQRNVDVGDRVTARQVLARLDPKDLQINVDSAAAAVAAEQARVNQASAAFVRQQKLLPKGYTSRSEYDSAQAALRGSESSLKAAQAQLANAREQLGYTALVADAPGVITARQAEVGQVVQATMPIFDLARDGDRDAVFNVYESLFVKPPTNQAVQVTLLDNPNIKVSGKVREVTPAVSAQTGTLQVKIALDPLPEGMDLGSVVSVALSAPANASVELPWAALTKDLGEQLGKPAVWVVDEQGKVNLRKVTVTRYLTAKVIIGDGLKSGEKVVVAGGQLLHPDMQVEIAEQPKQQNAQVQP
>NZ_CP013183.1|WP_057406568.1|371823_372771_+|RHS-repeat-associated-core-domain-containing-protein
MRQPTTLCHYRYDALDRLAARTPAIGTIARSFYQSDTLVSEVQGAEHIRFLHRDRQLLAMQSALATLLIGSDQQHSVLHTVSAGLPGPIAYTPYGHRQALNQLPGFNGERPDPLTGHYLLGNGYRAYNPALMRFNSPDSMSPFGKGGMNAYAYCAGDPVNRSDPTGHEVDVGQVLSFVWIGLGLFGAFVGVKTAVPAVKAIAKGSAPLSTKLTAASAVGQLAASSVFTVSRVINAVDPDAPAANILLATAISLLIPVLAVRTVSPRIKRWEDAGTNIELVKQGPSRGVVATAAVHIRRPSVRGHQPNDSDTAIWY
>NZ_CP013183.1|WP_003392450.1|371497_371713_+|hypothetical-protein
MINSTPSPPLPNSLEDSLMQVSDILRCASATAYETGDNLDGLKRDLAFSVVHLINMAKAELERSLECVQNP
>NZ_CP013183.1|WP_003341510.1|369984_371004_+|ABC-transporter-substrate-binding-protein
MNTAFQRPALTVLAATLGLFGALLSGGAQAEGKISIAQQFGIGYLILDVVRDQKLIEKHGKEQGLDIEVDWNSISGATAMNEALLAGALDVVSAGVPPMLTVWDRTKGKQNVKAIASLGSMPNYLLTNNPNVKTLKDFTDKDRIAVPAAGVGFQSRTLQIETAKLFGNDNYKKFDNISVSLAHPDATSALIAGGSEINSHFSSPPFQYQELENPNVHKVLSSYDVLGGQATFNVLYTTEKFHDKNPKTYKAFYDALAEAEKIIKADKPAAAQTYIRVEQSKLPLPLVEKIVADPEIDFTVTPQRTFIYAEKLHELGVLKNKAASWKDFFFEEAHGTEGS
>NZ_CP013183.1|WP_044312634.1|384645_386004_-|LLM-class-flavin-dependent-oxidoreductase
MARKKILLNAFNMNCIGHINHGLWTHPRDTSTQFNSLEYWTDLAKLLERGLFDGLFIADIVGVYDVYQNSVDVTLKEAIQLPVNDPLLLVSAMAGVTRHLGFGLTANLTYDAPYLFARRMSTLDHLSRGRVGWNIVTGYLDSAARAMGLSEQNEHDRRYDQADEYLEVLYKLWEGSWEDDAVINDREQRVYAQPGKVHKVRHQGEFYQVEGYHLCEPSPQRTPVLFQAGSSERGLQFAGQNAECVFISGQNKAATREQVDKVRASAVQAGRNPEDIKVFMGLNVIVAATEALAREKHAEYRRHASAEAGVAHFAASTGIDFSRYEMDEPIQYVKNNAIQSATKNLKNNDWTRQKLLDQHALGGRYITLIGSPEQVADELESWIEETGLDGFNLTRIVTPESYEDFIDLVIPELQRRGSYKTAYQDGSLRKKLFPQGTDRLPQRHAGAAHRHI
>NZ_CP013183.1|WP_024682625.1|386003_387209_-|SfnB-family-sulfur-acquisition-oxidoreductase
MSSNPKARDNAALITSDAQALHVARELALQLKTDSAHRDRERRLPHAELELFSQSGLWGISVPQAFGGAGVSNITLAKVIQLISEADGSLGQIPQNHFYALEVLRVNGSPEQQARLYAEALAGVRFGNALAELGTRTAHDRTTRLSRDGDGYRINGRKFYATGALYAQRIPTSVVDDEGVQQLVFVPHDSEGLSVIDDWSGFGQRTTGSGSVVFDNVHVSARDVVPFQSAFQRPTTVGPLAQILHAAIDTGIARAAFEDALAFVQTRTRPWIDSGIEKAVDDPLTLHSFGKLGIRLHAAEALLERAGEFLDVAQADSNAETVAAASIAVAEARAISTEISLAAGSTLFELAGSQSTLAEHGLDRHWRNARVHTLHDPVRWKFHAIGNYYLNDTNPPLRGTI
>NZ_CP013183.1|WP_057406754.1|387234_388422_-|SfnB-family-sulfur-acquisition-oxidoreductase
MLKATVLQNDAQAIAAAHDLAAAAQINAANRDRQRALPWAEIEQFTRSGLGSISIPRAYGGPQVSFVTVAEVFRIISAADPALGQIPQNQFGILHLLQSSATEQQKKTLFQSVLNGWRIGNAGPERGTKNTLELKARITTNGERLSITGQKFYSTGALFAHWVAVKALDDQGRQIMAFVQRGTPGLRIVDDWSGFGQRTTASGTVLLDNVPVDAALVVDNWRLSLTPNIQGAVSQLIQAAIDAGIARGAIDDAIAFVREKSRPWIDANVERASDDLYVIADIGKLKLELHAAEALLRKAGQELDEISAAPIDEHSAARASIAVARAKVLTTEISLLASEKLFELAGSRATLAEFNLDRHWRNARVHTLHDPVRWKYHAVGTWHLNGTLPARHSWI
>NZ_CP013183.1|WP_003430232.1|388945_389665_-|hypothetical-protein
MNQSTCNAHPLSLPIPSVPLASRHGIGVRNASQLVVHVDPYGSMEEGDLIELFWDGCYVASTILKASDVGKPVILRVPESFLQNGKARTYYRVMKIGGVPVTSPCRKLWVKLNAPGGQLVSANTEENQGLAPLYVAPSVIRHGLSRRHLEGGLPMTIEPYLNMAVHDEITIRWGDLRMDLPPLTADDVGEPVDLVVPPELIREGGDEQRLEVSYCVIDRVGNNSLWAPPRIIKIQPLGH
>NZ_CP013183.1|WP_024661619.1|390242_390986_-|L-cystine-ABC-transporter-ATP-binding-protein-YecC
MIVVEKLTKAFKGNQVLKGIDLRIEAGEVVAIIGPSGSGKTTLLRCLNLLETPDSGRIKVGDIEIDGTRSMNQQQGLIRQLRQQVGFVFQNFNLFPHRTALENVIEGPVVVKKVAREAAEALGRKLLAKVGLSGKEDAYPRRLSGGQQQRVAIARALAMEPQVILFDEPTSALDPELVGEVLTTIRALAEENRTMVIVTHEMSFARDVANRVIFIDKGVIVEQGEAKALFANPKEERTRQFLERTRS
>NZ_CP013183.1|WP_003341471.1|390989_391658_-|cystine-ABC-transporter-permease
MIEESLQLALDSAPFLLKGAYYTVFLSIGGMFFGLLLGFGLALMRLSRIKPVNWIARIYVSFFRGTPLLVQLFVIYYGLPELGIQLEPLSAALIGFSLNMAAYACEILRAAISSVERGQWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELFRQAQLITARTFEIFTMYLAAALIYWILATALSHLQNKLEARVNRHDLET
>NZ_CP013183.1|WP_003341469.1|391654_392452_-|cystine-ABC-transporter-substrate-binding-protein
MNISAIRRTFLFSAMGLMLSAGIAGQAMAGEQLQKIKDSGTLNVGLEGTYPPFSFVDESGKLTGFEVEFSEALAKELGVKAKIQPSKWDGILAALDSKRLDVVINQVTISDERKKKYDFSEPYTVSGIQALVLKKNEDAIKSAKDLTGKKVGVGLGTNYEEWLKANVPGAIVKTYDDDPSKIQDLSVGRIDAILVDRLAALEMAAKTKNKLVPAGDAFSRQESGIALRKGEPELLAAIDKAIDKLRADGTLKKLSEKYFNADVTK
>NZ_CP013183.1|WP_057406748.1|392672_393671_-|D-cysteine-desulfhydrase
MIKNQLARFNRLDLISAPTALEKLERLSVWADRDIYIKRDDTTTLALGGNKVRKLEYLAADALAQGADTLITAGAIQSNHVRQTAALAARLGLGCVALLENPIGTEDPSYLKNGNRLLLELFDAKVELVENLDNADEQLQALAARLSSSGKKPYLVPIGGSSPVGALGYVRAGLELAEQIKQTGIDFAAVVLASGSAGTHSGLALALAHELPQLPVIGVTVSRSEEAQLPKVQGLAERTAELLGVALPDHFKVELWDEYFAPRYGEPNAGTLSAIKLVASHDGLLLDPVYTGKAMSGLLDGIGRQRFNDGPLIFLHTGGAPALFAYPDAFDQ
>NZ_CP013183.1|WP_003341466.1|393868_394822_+|serine-acetyltransferase
MSDIPEASADGRSSHWQLQRIVSQLRGAREDWRARNRRVSGEHGGRELPSRAAMGEILEALSGALFPMRLGPVDLREESEDFYVGHTLDVALNALLAQARLELRYVAHQQGGDLNSIDARALELIQGFAMALPGIRLLLDTDVLAAYHGDPAARSVDEVLLCYPGILAVIHHRLAHYLYRAGLPLLARISSEIAHSATGIDIHPGAQIGPSFFIDHGTGVVIGETAIIGERVRIYQAVTLGAKRFPSDEDGQLQKGHARHPIVEDDVVIYAGATILGRITIGKGSTIGGNVWLTRSVPADCNLTQANLLQQDDCSRK
>NZ_CP013183.1|WP_003392419.1|394834_395542_-|hypothetical-protein
MTRPLDDNIHELAGEYVLGTLSAQKRLDVQRRLSREPDLQAAVNAWEQRLLPLTELAEPVTPSPGLWDRIERNLLDMTTPASTPQKPRVRWWDNLSIWRGLAGAGLAASLVLGMTLLTRAPAQPSYLVVLVGPQDKAPGWVVQASNSQEIQLIPLGVFEVPADRALEFWTKGDDWQGPVSLGLVKPGESLHVPLDKLPPLQPNQLFELTLEKSTGSPIGKPTGPIQFIGRAVKVI

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Crispr_ID: NZ_CP013183_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013183_2

894808-894975

Orphan

Consensus_repeat	Method
GAACGGCATGCGACGCAGAGCGCCGCACGATAGTGGGGTGATCATTCCTCACGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013183_2

>merge|NZ_CP013183|2|894808-894975|CRISPRCasFinder
GAACGGCATGCGACGCAGAGCGCCGCACGATAGTGGGGTGATCATTCCTCACGCTCCAGCGTGGGAATGCGTTTCACGACGCTCTGCGTCGTCAAGAGGACGCAGAGCGTCCAGAACGGCATGCGACGCAGAGCGCCGCACGATAGTGGGGTGATCGTTCCTCACGCT

>NZ_CP013183|2|2|894808-894975|CRISPRCasFinder
GAACGGCATGCGACGCAGAGCGCCGCACGATAGTGGGGTGATCATTCCTCACGCT	CCAGCGTGGGAATGCGTTTCACGACGCTCTGCGTCGTCAAGAGGACGCAGAGCGTCCA
GAACGGCATGCGACGCAGAGCGCCGCACGATAGTGGGGTGATCGTTCCTCACGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013183.1\|WP_010415605.1\|888836_890492_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP013183.1\|WP_003414795.1\|887441_888251_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|214534
NZ_CP013183.1\|WP_057405959.1\|900961_901585_-\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP013183.1\|WP_003345130.1\|897070_897700_-\|DUF1780-domain-containing-protein	unknown	unknown	gnl\|CDD\|285845
NZ_CP013183.1\|WP_057405960.1\|898585_900058_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP013183.1\|WP_003414793.1\|884974_885778_+\|type-III-effector	unknown	unknown	gnl\|CDD\|185157
NZ_CP013183.1\|WP_010415567.1\|900164_900623_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013183.1\|WP_003392712.1\|895025_896324_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NZ_CP013183.1\|WP_002552020.1\|900755_900965_-\|DNA-gyrase-inhibitor-YacG	unknown	unknown	gnl\|CDD\|234754
NZ_CP013183.1\|WP_002553206.1\|892994_893363_-\|response-regulator	unknown	unknown	gnl\|CDD\|381110
NZ_CP013183.1\|WP_003347066.1\|888260_888800_-\|purine-binding-chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|223905
NZ_CP013183.1\|WP_032661051.1\|886911_887445_-\|chemoreceptor-glutamine-deamidase-CheD	unknown	unknown	gnl\|CDD\|237400
NZ_CP013183.1\|WP_161806269.1\|893372_894587_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP013183.1\|WP_057405993.1\|897827_898295_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013183.1\|WP_057406215.1\|890522_892634_-\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NZ_CP013183.1\|WP_057405958.1\|901581_902454_-\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900
NZ_CP013183.1\|WP_057405957.1\|902455_903673_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NZ_CP013183.1\|WP_003430751.1\|885872_886949_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
NZ_CP013183.1\|WP_003347075.1\|892680_892971_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NZ_CP013183.1\|WP_003317783.1\|896540_897074_-\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167

Protein	Function_ID	Function_description	E-value
NZ_CP013183.1\|WP_010415605.1\|888836_890492_-\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	3.93557e-65
NZ_CP013183.1\|WP_003414795.1\|887441_888251_-\|SAM-dependent-methyltransferase	gnl\|CDD\|214534	smart00138, MeTrc, Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.	4.12461e-89
NZ_CP013183.1\|WP_003345130.1\|897070_897700_-\|DUF1780-domain-containing-protein	gnl\|CDD\|285845	pfam08682, DUF1780, Putative endonuclease, protein of unknown function (DUF1780). This is a family of uncharacterized proteins. The structure of a hypothetical protein from Pseudomonas aeruginosa has shown it to adopt an alpha/beta fold, placing it in the Endonuclease superfamily/clan of restriction endonucleases.	1.21441e-126
NZ_CP013183.1\|WP_057405960.1\|898585_900058_+\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	3.27964e-32
NZ_CP013183.1\|WP_003414793.1\|884974_885778_+\|type-III-effector	gnl\|CDD\|185157	PRK15245, PRK15245, type III secretion system effector phosphothreonine lyase.	7.83094e-96
NZ_CP013183.1\|WP_003392712.1\|895025_896324_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	2.60153e-150
NZ_CP013183.1\|WP_002552020.1\|900755_900965_-\|DNA-gyrase-inhibitor-YacG	gnl\|CDD\|234754	PRK00418, PRK00418, DNA gyrase inhibitor YacG.	9.4983e-32
NZ_CP013183.1\|WP_002553206.1\|892994_893363_-\|response-regulator	gnl\|CDD\|381110	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	6.84955e-64
NZ_CP013183.1\|WP_003347066.1\|888260_888800_-\|purine-binding-chemotaxis-protein-CheW	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	3.42263e-42
NZ_CP013183.1\|WP_032661051.1\|886911_887445_-\|chemoreceptor-glutamine-deamidase-CheD	gnl\|CDD\|237400	PRK13498, PRK13498, chemoreceptor glutamine deamidase CheD; Provisional.	4.83467e-110
NZ_CP013183.1\|WP_161806269.1\|893372_894587_-\|chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	2.55961e-21
NZ_CP013183.1\|WP_057405959.1\|900961_901585_-\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	4.29708e-90
NZ_CP013183.1\|WP_057406215.1\|890522_892634_-\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	0
NZ_CP013183.1\|WP_057405958.1\|901581_902454_-\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	4.38143e-58
NZ_CP013183.1\|WP_057405957.1\|902455_903673_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	4.27636e-149
NZ_CP013183.1\|WP_003430751.1\|885872_886949_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	0
NZ_CP013183.1\|WP_003347075.1\|892680_892971_-\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	2.72482e-15
NZ_CP013183.1\|WP_003317783.1\|896540_897074_-\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	1.74654e-29

>NZ_CP013183.1|WP_161806269.1|893372_894587_-|chemotaxis-protein
MSNQSSSTPAQNHPRFVWFSLIPVIPAIAWILTQFGTGTANLVACAVLLAIGLGTCAWAARSQQNEVRRAVAQALDHHQAHSAQSSAMASNAQFNEILLGAMPIWAKQVESSRQQTETAIVELSTRFMGISERLQETVQASQHAAGELDGQNADGALKVLSQSDSELSRVIDSLKSTQASRDQTLSQVRSLTAYTGELRTMAADVAAIAAQTNLLALNAAIEAARAGEAGRGFAVVADAVRSLSSKSSETGQQMSAKVDIINNAITQLVQAASSGADQDSHSVAASEQSIQNVLERFQSITGRLAESADLLKQESYGIRDEMTEVLVNLQFQDRVSQILAHVRDNIDSLHAHLLQASQSPDEAVAIDARQWLARMESTYATDEQRRTHRGESAAQLDSQEITFF
>NZ_CP013183.1|WP_002553206.1|892994_893363_-|response-regulator
MAKSVLVVDDSSSVRQVVGIALKSAGYDVIEACDGKDALGKLTGQKVHLIISDVNMPNMDGITFVKEVKKLASYKFTPIIMLTTESQESKKAEGQAAGAKAWVVKPFQPAQMLAAVSKLILP
>NZ_CP013183.1|WP_003347075.1|892680_892971_-|STAS-domain-containing-protein
MPTPDENATDTARVQIDGELTIYTVTELAARLLPQIGAAARLEVDLSQVTEMDGAGLQLLAVIQREAGKTGTSLHLTGQSKAVSETFELCNPGVVL
>NZ_CP013183.1|WP_057406215.1|890522_892634_-|chemotaxis-protein-CheA
MSINLDQAQQTFIVEARELLQAMEESLLQLESEPGDQDAIGAVFRAAHTIKGSAGLFGLTPIVSFTHIVEDVLDRLREGSVSVNAELIAVLLKSGDHMLELIDVVASRGQQMQQPALEREAALRQALQVFQAPASAGAADSASASVVSDDEPSAEVLWHISLRFGVDVFRNGMDPLSFLRYLNTLGQMVQVTTVTDSIPAVEAWDPESCHLGFEIDFRSAAGHAAINEVFDFVREDCAVEITPVNETPDPVEPTGTELVSQPEHSPMVASGELLGDQRAVPRTPATATATAVERPSSGSEQKNKDGRYVRVNADKLDELINLVGELVIASAGASLLAKSCDNDPLQEASSTVSGLVEQILDGALHLRMIPIGDTFNRFRRVVRDVSQELGKDIDLIINGAETELDKTVVEKIGDPLMHLLRNSMDHGIESAEARRAAGKPAKGHLSLNAYHDSGSIVIEIADDGAGLNRERILDKAQQRGLVAAGASLTDQEIYNLIFEPGFSTAEAVTNLSGRGVGMDVVKRNITLLRGTVDLDSQPGQGTIVRIRLPLTLAIINGFLVGIDQSTYVIPLDMVQECIELDEHNRQLTRDSGYLDLRGEVLPLVYLRDHFNHEGPAARRQNVVVVRYAEHKAGLVVDDLLGEFQTVIKPLGKLFGALRGISGSTILGSGAVALILDIPALLNQIVHMEARSTQAPQSLLPTSR
>NZ_CP013183.1|WP_010415605.1|888836_890492_-|HAMP-domain-containing-protein
MKWFYDLKISTKLITSFLVVLALTAAMGVFAILQLGQVNQAAQDIKENWMPSMRAAAGMRFFAANYRLKENRHIAADTAQEKAQMELEAADARKQFETRLATYDKLVVSDEDRQLFNSATATWAAYLKSSSELFDMSRQGLEAQARAMLKGDSKTHFDELTGQLQKMVELNDAGATVAGDKGTKLYENARISIIVVLIAALLIGLGLALFIARIISRPLKEAATAAEQLAEGNLNAHIGHGSKDETGMVLNAMRNMVGKLSHIIGEVRNAADNLASASEEVSATAQSMSQATSEQAASVEETSASVEQMSASINQNTENAKVTDGMASKAAKEATDGGESVQQTVVAMKKIAQRISIIDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQVAAQEIGELSSSSVDMAEKAGKLLDEMVPSINKTSDLVQEISAASEEQAAGVAQINTAMTQLNQVTQQNASSSEELAATAEEMSSQAEQLQQAMSFFTLDASPRAVAQSATFDSRNSPNRQPPRPPQQAPRKAFAQSMAGAPDESEFTRF
>NZ_CP013183.1|WP_003347066.1|888260_888800_-|purine-binding-chemotaxis-protein-CheW
MGSLVTTRQTAATVEEEAQYLTFMLGGEMFAIGILGIKEIIEYGSLTVVPMMPAFVRGVINLRGAVVPVVDLSARFGRQNSAITRRSCVIIIEANSEDGQPQDIGLLVDNVSAVLEIPASQIEPPPNFGARIRADFISGMAKVDGKFVIVLEVDRVLSIDEMSSLAEASQSLPTDVDAT
>NZ_CP013183.1|WP_003414795.1|887441_888251_-|SAM-dependent-methyltransferase
MPDTASLTDREFGQFQNWLYNAAGIKLTLAKKALVAGRLFKRLKHYELDNYGEYFKLIMNDQRNGELQVALDLLTTNETYFFREPKHFDFLRQQVLPKVTHGKMFRIWSAASSSGEEPYSLAMTLAEQLGTTPWEVVGSDISTRVLSKARSGHYPLERTETLPQPLLFKYCLKGIGRQEGTFLIDKSLRSRVSFVQVNLNDTLPDLGEFDVIFLRNVMIYFDQETKSKVVARLIPRLKPGGYFIISHSESLNGINDMLKMVSPSIYRKP
>NZ_CP013183.1|WP_032661051.1|886911_887445_-|chemoreceptor-glutamine-deamidase-CheD
MNTPVGVAEIVLGPGEVVFQTRPTRLRTLLGSCVAITFWHPWRRIGGMCHFMLPGRIRRHQPLDGRYADEAMEILIRHALANGTLPEEYQVKLFGGGEMFPAHRHDPHMQNVADSNVHAALALAEQNRLKLMAQDLGSTGHRSIIFDLWDGNVWVRHQPMEAMEKDAKQKNQRTAGR
>NZ_CP013183.1|WP_003430751.1|885872_886949_-|chemotaxis-response-regulator-protein-glutamate-methylesterase
MPNKKISVLLVDDSAVVRQVLVAILNDTPDIHVMGAASDPIFAMSKLAQEWPDVIVLDVEMPRMDGITFLKKIMSERPTPVVICSSLTQKGAETSLQALSAGAVEIITKPTTGLKNFLIDSAAELVAAVRAAANSNVRNLGKRTAAPVLTPASKLTADAILPAASGHAMAQTTERIVAIGTSTGGTQALEAVLTALPRVCPGMVIVQHMPEKFTASFAERLNSLSQIEVREARNNDRILPGLALIAPGGKHMMVTRSGAYYHVQVIDGPLVNRHRPSVDVLFRSVAKFAGKNATGIIMTGMGDDGARGLKEMLDAGSATVAQDEASCVVFGMPKEAIKLNAAQRIIPLQEIHQVILHR
>NZ_CP013183.1|WP_003414793.1|884974_885778_+|type-III-effector
MPINRPAFNLKLNTAIAQPTVKKDAGAELRRLNQSEVRANTQTRFAVNHRAPTYDVAQSALGENHGGWTAANHFKMTGSEVFIHMDRLEPNCKGEFAGDKIHLSVAPEDVPDAFNAIGKILQASDSPVDSWKVTDMKCLQAEMPAAKQRVALGAQFTIYAKPDRADNTYSPEYMGKMRGMISSIEQELSAAGVRQSSHRPDSDVSPGHWSYASYRNEHKSNRSGTSNQHRNLEAEPFFQLVSFSDGASGSSRSSAGHQALLTPSWAR
>NZ_CP013183.1|WP_003392712.1|895025_896324_-|NAD(P)/FAD-dependent-oxidoreductase
MTHRIVIVGGGAGGLELATSLGKTLGKKGTASVTLVDANLTHIWKPLLHEVAAGSLNSYEDELNYVAQAKWNNFQFQLGRMTGLDRASRQIHLAETLDENGAELVPARSLGYDSLVIAVGSTTNDFGTKGAAEHCLFLDSRKQAERFHQQLLNHYLRAHAGQADSAQEITVAIVGAGATGVELAAELHNAAHELAAYGLGQIKPENLRITVIEAGPRVLPALPERIGAPVHKTLEKLGVTVLTNAAVSEVTADGLITATGQVIPASLKVWAAGIRAPAFLHELDGLESNRINQLQVLPTLQTTRDENIFAFGDCAACPQKGTDRNVPPRAQAAHQQASLLVKSLRLRIEGKTLPEYTYKDYGSLISLSSFSAVGNLMGNLMGSVMLEGWLARMFYVSLYRMHQMALYGTFRTLMLMLGSKIGKGTEPRMKLH
>NZ_CP013183.1|WP_003317783.1|896540_897074_-|MOSC-domain-containing-protein
MSPLQELLADVPQQGRVRWIGVRPQSRVEMIELDAVEARREAGLTGDHSRPGPRNARQVTLIQWEHLAVVGSLLNRAADNPIVPQDLRRNLVISGINLFSLKNRRFRIGQAIFETTGWCQPCARLEQRLGHGTFQAVRGHGGITARVLQSGIIRLDDTLQVEPLEITDPWPPARQHA
>NZ_CP013183.1|WP_003345130.1|897070_897700_-|DUF1780-domain-containing-protein
MDDSDYLRLLTIQAEQANAFLSNARKWERERWVCQRLLQGLNIAHRNEDFTPASQEPPDVLFRDGRFEVFFVLDEGRRLNDEWREELARRRSAFSLSQLVRREAKPKRIPASELLHRLAPTLRKKSTNYRERGIDLGGLDIIAFASLKREVLDLNSHFPPPTEYLRQGWRSLSLVGPTFARVLFAHPGAPDFLRTNLGRSVVFDVGISL
>NZ_CP013183.1|WP_057405993.1|897827_898295_+|hypothetical-protein
MKLLPILLLALLPLTANALQVGERLSSWTLLDQYDQPYTLNNQTQTLLVARSMDAAKLVNAALQDKPKGFLESRHTVFVADIQKMPTIIAKMFAIPKMRDYSYRVMLDRDARIVPQYAGDDDKVLWLQLRDGQLVRQQQFGSAEALRAALEKPQF
>NZ_CP013183.1|WP_057405960.1|898585_900058_+|sel1-repeat-family-protein
MKANALFAGLLLFCLSEGALASMQQGLNAYNQGLYQQAFSLFQKEAAKGNAQAEYYIGLQYEEGKGVSKDAIKAFENISAAAQQRLVLAQYRLGFFYENGVGTAVNLAKAAEFYKVAAEQGLPAAQSRYALMLGEGRGVEKDEASAVGFIQRAADSGDAEALNILGVGYIEGRGVDRDAAKGFRFLKLAAEKGNLLAQRNLAKSLAEGKGVEKDEHEAFKWYEKSAAGNDPIGQLALGQAYEYGAGVEKDYESALAWYRRSASNGYAPAQYKIGYFYNVGKGTATDYKEARYWLRLAATQGLAVAQADLASLFESGRGGAVDNAAAAKWYRLAAAQNMPRAQYQLARMLKEGRGVERNYAEALLYFRALSAERIAYAENELGNMYKHGYGVPQDYSKAMDWYWKAAEQDDDAAFANLSLIYEKGLGVSKNSVISYALMKCASSINPDSKVYKDAIDKVSEEMDPEKAMDRGRLSHEVCRVKSVAVDNYLK
>NZ_CP013183.1|WP_010415567.1|900164_900623_+|hypothetical-protein
MLILGLAVYALGGVGLYYLAGQLIAAGEAMDAMYAWVFLDAGVQISVYQFTCFVWSTVCHACWMALFSRRGVVWVERIKFSNVVYLFFRVLGYLFFCLFILGIVGVGVAKRPFSDFHQFFSILVPCLLLGGWVWSARDLLIAVSGGKQRDVR
>NZ_CP013183.1|WP_002552020.1|900755_900965_-|DNA-gyrase-inhibitor-YacG
MSQPMTVQCPTCDAPVEWSAASPSRPFCSERCKLIDLGAWASEEHAIPVSPDAEDELFSGDLEAPHRGH
>NZ_CP013183.1|WP_057405959.1|900961_901585_-|dephospho-CoA-kinase
MTHPDEKPWILGLTGGIGSGKSAAAKCFSDLGVDTVDADHAARWVVEPGRPALEQIAAHFGNGVLQTSGELDRGALRKLIFENPEQRRWLEALLHPLINQEIVSHLANAKSPYAILVSPLLVESGQYRMVQRLLVIDAPAHLQIERTMLRDSSSQEQVEAILKVQIQREDRLRHANDVLVNDRDHAWLSSEVERLHHFYLTLRGGQS
>NZ_CP013183.1|WP_057405958.1|901581_902454_-|prepilin-peptidase
MPLLDLLASSPLAFVITCCILGLIIGSFLNVVVYRLPIMMERDWKAQSRELLGLPADPDQPVFNLNRPRSSCPHCAHKIRPWENLPVISYLLLRGKCSQCKAPISKRYPLVELTCAMLSAYVAWHFGFGWQAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVGAVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR
>NZ_CP013183.1|WP_057405957.1|902455_903673_-|type-II-secretion-system-F-family-protein
MASRAVKVIVYTWEGVDKKGTKASGELSGHNMALVKAQLRKQGINPTKVRKKSASIFGKGKKIKPLDIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRTLVSSLKQEVSAGNSFATALRQKPEYFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPIAVLIVAIIVSGILLIKVVPQFQSVFAGFGADLPAFTLMVIGLSNVVQKWWLIIVGLLFAGFFLFKRAYKKSQKFRDGLDRLLLKAPLIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFKNAVTKVKQDVSTGMQLNFSMRSTGVFPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAFLGVIVGGLVIAMYLPIFKLGSIV

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2357290 : 2416782

Pseudomonas_phage(60.38%)

integrase,portal,protease,capsid,head,terminase,tail,tRNA

attL 2364693:2364743|attR 2418137:2418187

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003315564.1\|2357290_2359213_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.0e-124	37.5
WP_002553159.1\|2359230_2359764_+	translation initiation factor IF-3	A0A2I7S9Q1	Vibrio_phage	8.9e-14	37.3
WP_002553160.1\|2359824_2360019_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_002553161.1\|2360048_2360405_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_003367019.1\|2360509_2361526_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	8.4e-29	39.3
WP_044311531.1\|2361553_2363932_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_002553164.1\|2363935_2364238_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	1.8e-11	38.9
WP_003315559.1\|2364218_2364575_+	MerR family transcriptional regulator	NA	NA	NA	NA
2364693:2364743	attL	NA	NA	NA	NA
WP_057407326.1\|2364828_2365941_-\|integrase	tyrosine-type recombinase/integrase	A0A0U4JIT5	Pseudomonas_phage	3.1e-32	31.4
WP_005753573.1\|2365940_2366153_-	hypothetical protein	NA	NA	NA	NA
WP_057407328.1\|2366190_2366514_-	hypothetical protein	NA	NA	NA	NA
WP_024421391.1\|2366638_2366851_+	hypothetical protein	NA	NA	NA	NA
WP_057407330.1\|2366853_2367489_-	hypothetical protein	A0A059VF56	Pseudomonas_phage	5.2e-69	63.1
WP_057407332.1\|2367485_2367812_-	hypothetical protein	A0A023NGB2	Nitrincola_phage	1.6e-21	43.3
WP_057407333.1\|2368068_2368329_+	hypothetical protein	NA	NA	NA	NA
WP_057407335.1\|2368468_2369251_-	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	6.3e-16	30.6
WP_057407336.1\|2369330_2369519_+	hypothetical protein	NA	NA	NA	NA
WP_024692364.1\|2369644_2369878_+	hypothetical protein	NA	NA	NA	NA
WP_057407339.1\|2370128_2370392_+	DUF1652 domain-containing protein	NA	NA	NA	NA
WP_057407342.1\|2370958_2371816_-	phosphoadenosine phosphosulfate reductase family protein	A0A2K9VK66	Klebsiella_phage	1.5e-26	35.2
WP_057407343.1\|2372093_2373722_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.9e-176	79.6
WP_057407344.1\|2373915_2374539_-	hypothetical protein	A0A2H4JC30	uncultured_Caudovirales_phage	4.1e-42	42.4
WP_057407346.1\|2374594_2375599_-	nucleoid-associated protein YejK	L7TI92	Pseudomonas_virus	3.1e-124	65.6
WP_057407348.1\|2375669_2375924_-	hypothetical protein	NA	NA	NA	NA
WP_057407350.1\|2375920_2376508_-	hypothetical protein	A0A1B0VMB1	Pseudomonas_phage	1.4e-12	32.6
WP_057407352.1\|2376507_2376846_-	hypothetical protein	NA	NA	NA	NA
WP_057407353.1\|2377682_2377889_-	hypothetical protein	A0A0U4IJ22	Pseudomonas_phage	1.1e-15	55.9
WP_057407354.1\|2377951_2378353_-	helix-turn-helix transcriptional regulator	A0A1B0YZX7	Pseudomonas_phage	1.4e-19	47.7
WP_057407356.1\|2378706_2379015_+	DUF1654 domain-containing protein	A0A2D1GND3	Pseudomonas_phage	2.2e-25	56.6
WP_057407374.1\|2379064_2379292_-	hypothetical protein	NA	NA	NA	NA
WP_144435847.1\|2379383_2379671_-	hypothetical protein	NA	NA	NA	NA
WP_080392041.1\|2379736_2380591_-	S24 family peptidase	A0A0S2SYF7	Pseudomonas_phage	1.8e-96	63.6
WP_057407375.1\|2380678_2380855_+	Cro/Cl family transcriptional regulator	A0A0S2SYB8	Pseudomonas_phage	3.0e-11	62.7
WP_057407360.1\|2381336_2381759_-	hypothetical protein	NA	NA	NA	NA
WP_057407361.1\|2382004_2382802_+	hypothetical protein	A0A2H4J580	uncultured_Caudovirales_phage	3.0e-66	52.2
WP_057407362.1\|2382791_2383586_+	ATP-binding protein	A0A2H4J3E5	uncultured_Caudovirales_phage	9.6e-89	60.3
WP_057407363.1\|2383587_2383782_+	hypothetical protein	NA	NA	NA	NA
WP_057407365.1\|2383778_2384075_+	DUF1364 domain-containing protein	A0A2D1GNQ4	Pseudomonas_phage	3.6e-41	83.3
WP_057407367.1\|2384071_2384503_+	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	2.1e-53	74.1
WP_057407368.1\|2384499_2385780_+\|integrase	site-specific integrase	A0A2D1GND4	Pseudomonas_phage	2.5e-219	86.2
WP_033833054.1\|2385796_2386012_+	hypothetical protein	NA	NA	NA	NA
WP_057407371.1\|2386367_2386751_+	antitermination protein Q	A0A1W6JTD2	Pseudomonas_phage	3.1e-32	52.4
WP_057407372.1\|2386940_2387495_+	hypothetical protein	NA	NA	NA	NA
WP_058877183.1\|2387600_2387972_+	hypothetical protein	A0A059VK40	Pseudomonas_phage	8.9e-45	87.0
WP_024650633.1\|2387971_2388310_+	hypothetical protein	A0A059VJW1	Pseudomonas_phage	3.1e-28	74.1
WP_057405725.1\|2388365_2388596_+	hypothetical protein	A0A2C9CY14	Yersinia_phage	4.7e-12	49.3
WP_154232692.1\|2388612_2388753_+	hypothetical protein	NA	NA	NA	NA
WP_058877184.1\|2388756_2389107_+	hypothetical protein	NA	NA	NA	NA
WP_025168050.1\|2389157_2389358_+	hypothetical protein	NA	NA	NA	NA
WP_057405729.1\|2389348_2389744_+	HNH endonuclease	A0A2D1GNP5	Pseudomonas_phage	2.8e-57	75.2
WP_053275509.1\|2389911_2390397_+\|terminase	phage terminase small subunit P27 family	A0A2D1GNP3	Pseudomonas_phage	3.9e-77	88.8
WP_057405731.1\|2390397_2392131_+\|terminase	terminase large subunit	A0A2D1GNU5	Pseudomonas_phage	0.0e+00	91.3
WP_154635501.1\|2392139_2392451_-	hypothetical protein	NA	NA	NA	NA
WP_080348809.1\|2392449_2393595_+\|portal	phage portal protein	A0A1V0E8B9	Vibrio_phage	1.6e-124	57.5
WP_057405735.1\|2393598_2394462_+\|protease	Clp protease ClpP	A0A1V0E8B8	Vibrio_phage	7.7e-92	62.1
WP_057405737.1\|2394458_2395652_+\|capsid	phage major capsid protein	H2BDB0	Pseudomonas_virus	8.9e-139	67.4
WP_057405739.1\|2395702_2396119_+	hypothetical protein	NA	NA	NA	NA
WP_057405740.1\|2396122_2396599_+\|head,tail	phage gp6-like head-tail connector protein	G3ENA1	Psychrobacter_phage	1.2e-14	39.0
WP_024669134.1\|2396598_2396937_+\|head	phage head closure protein	A0A1J0GUY4	Halomonas_phage	8.1e-29	59.1
WP_057405741.1\|2396929_2397415_+	HK97 gp10 family phage protein	A0A0U3TGT7	Pseudomonas_phage	2.3e-56	67.7
WP_003407814.1\|2397414_2397783_+	DUF3168 domain-containing protein	Q9MCA6	Pseudomonas_phage	1.9e-39	65.0
WP_057405742.1\|2397846_2398350_+\|tail	phage tail protein	H2BDC0	Pseudomonas_virus	4.7e-49	60.2
WP_057405743.1\|2398359_2398797_+\|tail	phage tail protein	Q9MCA4	Pseudomonas_phage	3.6e-37	65.8
WP_057405744.1\|2399059_2399866_+	hypothetical protein	A0A2H4J8D6	uncultured_Caudovirales_phage	2.8e-59	47.8
WP_057405746.1\|2399922_2402493_+\|tail	phage tail tape measure protein	A0A2H4PI09	Pseudomonas_phage	8.3e-182	49.8
WP_057405749.1\|2402492_2402837_+\|tail	phage tail protein	A0A2D1GNJ1	Pseudomonas_phage	5.2e-31	53.5
WP_057405750.1\|2402873_2403572_+\|tail	phage minor tail protein L	A0A2D1GNF3	Pseudomonas_phage	7.4e-109	81.8
WP_057405751.1\|2403574_2404357_+\|tail	phage tail protein	A0A2D1GNP8	Pseudomonas_phage	3.9e-119	73.8
WP_057405754.1\|2404353_2404941_+\|tail	tail assembly protein	A0A2D1GNM2	Pseudomonas_phage	2.4e-76	74.1
WP_057405757.1\|2404996_2409697_+	DUF1983 domain-containing protein	A0A2D1GNE3	Pseudomonas_phage	0.0e+00	50.0
WP_057405759.1\|2410013_2410700_+	hypothetical protein	A0A2D1GNS6	Pseudomonas_phage	2.3e-38	38.6
WP_005739965.1\|2411827_2412142_+	hypothetical protein	A0A059VFX9	Pseudomonas_phage	1.4e-19	49.5
WP_057405761.1\|2412155_2412524_+	hypothetical protein	A0A059VFX9	Pseudomonas_phage	1.5e-39	76.8
WP_024684358.1\|2412819_2413353_+	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	1.2e-87	91.0
WP_058877185.1\|2413349_2413880_+	DUF2514 domain-containing protein	A0A059VF51	Pseudomonas_phage	1.3e-65	87.0
WP_057406121.1\|2413936_2414116_+	hypothetical protein	NA	NA	NA	NA
WP_057406122.1\|2414112_2415357_+	SGNH/GDSL hydrolase family protein	A0A059VA35	Pseudomonas_phage	8.8e-206	87.0
WP_158510301.1\|2415861_2416398_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_057406124.1\|2416413_2416782_-	helix-turn-helix transcriptional regulator	L7TKV7	Pseudomonas_virus	8.6e-08	37.0
2418137:2418187	attR	NA	NA	NA	NA

DBSCAN-SWA_2

3232590 : 3295058

Pseudomonas_phage(60.38%)

integrase,head,tail

attL 3235036:3235092|attR 3292990:3293046

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057407220.1\|3232590_3233679_+	molybdenum ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.0e-21	31.3
WP_057407221.1\|3233768_3234839_+	DNA topoisomerase IB	A0A0G2Y4T8	Acanthamoeba_polyphaga_mimivirus	7.5e-44	33.7
3235036:3235092	attL	NA	NA	NA	NA
WP_057407222.1\|3235278_3235623_+	hypothetical protein	NA	NA	NA	NA
WP_057407223.1\|3235637_3236882_-	SGNH/GDSL hydrolase family protein	A0A059VA35	Pseudomonas_phage	6.8e-206	86.5
WP_010439676.1\|3236878_3237091_-	hypothetical protein	A0A059VK06	Pseudomonas_phage	1.5e-09	51.4
WP_058877195.1\|3237103_3237631_-	DUF2514 domain-containing protein	A0A059VF51	Pseudomonas_phage	1.3e-65	82.3
WP_058877196.1\|3237627_3238161_-	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	3.0e-86	89.8
WP_057405761.1\|3238455_3238824_-	hypothetical protein	A0A059VFX9	Pseudomonas_phage	1.5e-39	76.8
WP_005739965.1\|3238837_3239152_-	hypothetical protein	A0A059VFX9	Pseudomonas_phage	1.4e-19	49.5
WP_057405760.1\|3239151_3240255_-	hypothetical protein	A0A059VJZ6	Pseudomonas_phage	4.5e-153	74.8
WP_057405759.1\|3240280_3240967_-	hypothetical protein	A0A2D1GNS6	Pseudomonas_phage	2.3e-38	38.6
WP_080399354.1\|3241283_3242981_-	DUF1983 domain-containing protein	A0A059VFW9	Pseudomonas_phage	1.3e-58	66.2
WP_057407054.1\|3245428_3245827_-	hypothetical protein	A0A059VK01	Pseudomonas_phage	2.2e-73	97.0
WP_057407055.1\|3245829_3246432_-	hypothetical protein	A0A059VA31	Pseudomonas_phage	2.6e-110	96.5
WP_057407056.1\|3246431_3247016_-	hypothetical protein	A0A059VJR9	Pseudomonas_phage	1.2e-101	94.8
WP_057407057.1\|3247033_3250735_-\|tail	phage tail tape measure protein	A0A059VJZ1	Pseudomonas_phage	2.0e-301	55.6
WP_057407058.1\|3250829_3251078_-	hypothetical protein	NA	NA	NA	NA
WP_144435851.1\|3251097_3251538_-	hypothetical protein	A0A1B0VMH3	Pseudomonas_phage	2.2e-10	31.7
WP_057407077.1\|3251801_3252476_+	hypothetical protein	NA	NA	NA	NA
WP_057407060.1\|3252564_3252927_-	DUF2513 domain-containing protein	A0A2H4J4K9	uncultured_Caudovirales_phage	1.8e-05	28.9
WP_057407062.1\|3253660_3254134_-	hypothetical protein	A0A059VF34	Pseudomonas_phage	3.9e-77	94.9
WP_057407063.1\|3255792_3256215_-	hypothetical protein	A0A059VK45	Pseudomonas_phage	2.9e-60	82.9
WP_057407064.1\|3256211_3256592_-	hypothetical protein	A0A059VF88	Pseudomonas_phage	3.2e-34	56.2
WP_057407065.1\|3256591_3256954_-	hypothetical protein	A0A2H4IZB5	uncultured_Caudovirales_phage	6.9e-26	46.9
WP_057407066.1\|3256956_3257334_-	hypothetical protein	A0A2H4J0N2	uncultured_Caudovirales_phage	2.0e-44	76.8
WP_161806285.1\|3257344_3257500_-	hypothetical protein	A0A2D1GNQ9	Pseudomonas_phage	3.2e-09	76.3
WP_057407068.1\|3257774_3258812_-	hypothetical protein	A0A0B4ZZB1	Achromobacter_phage	1.2e-91	50.8
WP_080392015.1\|3258818_3259589_-	hypothetical protein	A0A2H4J0I7	uncultured_Caudovirales_phage	2.9e-74	65.2
WP_057407069.1\|3259666_3259900_-	hypothetical protein	NA	NA	NA	NA
WP_057407070.1\|3259929_3260973_-\|head	phage head morphogenesis protein	A0A0H5BBX3	Pseudomonas_phage	3.9e-29	29.0
WP_057407071.1\|3260962_3262342_-	DUF4055 domain-containing protein	A0A2H4J0H4	uncultured_Caudovirales_phage	1.0e-194	80.1
WP_057407072.1\|3262341_3263832_-	hypothetical protein	A0A2H4J2I1	uncultured_Caudovirales_phage	4.8e-259	85.3
WP_024683715.1\|3263834_3264452_-	hypothetical protein	G8C7P2	Escherichia_phage	2.7e-38	47.8
WP_024683714.1\|3264540_3264885_+	hypothetical protein	NA	NA	NA	NA
WP_057407073.1\|3264900_3265152_-	hypothetical protein	NA	NA	NA	NA
WP_024683712.1\|3265148_3265340_-	hypothetical protein	NA	NA	NA	NA
WP_057407075.1\|3265684_3266023_+	YceK/YidQ family lipoprotein	NA	NA	NA	NA
WP_057407076.1\|3266184_3266523_-	hypothetical protein	A0A059VJW1	Pseudomonas_phage	4.4e-27	71.6
WP_024660209.1\|3266522_3266894_-	hypothetical protein	A0A059VK40	Pseudomonas_phage	1.3e-43	75.6
WP_057406848.1\|3266953_3267697_-	hypothetical protein	NA	NA	NA	NA
WP_057406849.1\|3267814_3268024_-	hypothetical protein	NA	NA	NA	NA
WP_057406850.1\|3268020_3268602_-	hypothetical protein	A0A059VF83	Pseudomonas_phage	2.3e-100	90.2
WP_057406851.1\|3268598_3269219_-	hypothetical protein	A0A059VA66	Pseudomonas_phage	4.9e-72	71.5
WP_057406852.1\|3269215_3269686_-	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	1.2e-51	61.5
WP_057406853.1\|3269682_3270480_-	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	3.0e-90	67.8
WP_057406854.1\|3270466_3271372_-	helix-turn-helix domain-containing protein	A0A1B0VME0	Pseudomonas_phage	9.4e-48	66.9
WP_080391989.1\|3271368_3271956_-	hypothetical protein	A0A1B0VME0	Pseudomonas_phage	1.4e-39	66.4
WP_057406855.1\|3271989_3272412_-	Rha family transcriptional regulator	A0A2D1GNM7	Pseudomonas_phage	9.4e-51	70.0
WP_010430462.1\|3272494_3272710_-	transcriptional regulator	A0A125RNS7	Pseudomonas_phage	4.2e-23	71.8
WP_057406856.1\|3272797_3273460_+	helix-turn-helix domain-containing protein	K7P850	Enterobacteria_phage	4.6e-44	46.6
WP_004417578.1\|3273603_3274026_+	hypothetical protein	NA	NA	NA	NA
WP_080391990.1\|3274223_3274397_-	DUF1652 domain-containing protein	NA	NA	NA	NA
WP_057406857.1\|3274545_3274809_-	DUF1652 domain-containing protein	NA	NA	NA	NA
WP_057406858.1\|3275374_3276154_+	hypothetical protein	A0A1B0YZY3	Pseudomonas_phage	1.3e-93	65.1
WP_024961042.1\|3276701_3276992_+	hypothetical protein	NA	NA	NA	NA
WP_057406859.1\|3277012_3277420_+	hypothetical protein	NA	NA	NA	NA
WP_016567834.1\|3277416_3277608_+	hypothetical protein	A0A1B0VMB8	Pseudomonas_phage	7.8e-13	60.3
WP_057406860.1\|3277937_3278825_+	recombinase RecT	A0A0F6TJP0	Escherichia_coli_O157_typing_phage	3.1e-80	66.4
WP_057406861.1\|3278821_3280495_+	heme peroxidase	A0A2H4J6P1	uncultured_Caudovirales_phage	5.2e-161	56.4
WP_057406862.1\|3280596_3281403_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_029572837.1\|3281575_3281929_+	hypothetical protein	NA	NA	NA	NA
WP_057406863.1\|3281969_3282782_+	DUF2303 family protein	I3PUY7	Vibrio_phage	1.4e-42	38.8
WP_057406864.1\|3282879_3283101_-	hypothetical protein	NA	NA	NA	NA
WP_057406865.1\|3283207_3283981_+	hypothetical protein	B5WZW7	Pseudomonas_phage	6.6e-42	63.6
WP_057406866.1\|3284039_3284936_+	DNA cytosine methyltransferase	W0LM09	Edwardsiella_phage	4.6e-95	55.8
WP_057406867.1\|3284944_3286030_-	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_080391991.1\|3286503_3287448_+	DNA cytosine methyltransferase	A0A2I7QZY6	Vibrio_phage	1.3e-55	60.0
WP_158510302.1\|3287525_3289325_-	hypothetical protein	NA	NA	NA	NA
WP_057406871.1\|3289535_3290186_+	hypothetical protein	Q5QF30	Pseudomonas_virus	1.0e-43	48.9
WP_057406872.1\|3290182_3290740_+	HNH endonuclease	Q94MV4	Myxococcus_phage	1.8e-33	58.7
WP_057406873.1\|3290742_3290955_-	hypothetical protein	NA	NA	NA	NA
WP_057406874.1\|3291079_3291541_+	hypothetical protein	A0A0U4IIZ7	Pseudomonas_phage	5.1e-58	71.5
WP_032657892.1\|3291621_3291837_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_057406875.1\|3291837_3292872_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	1.3e-96	55.5
WP_057406876.1\|3293417_3295058_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.8e-50	39.3
3292990:3293046	attR	NA	NA	NA	NA

DBSCAN-SWA_3

3613699 : 3624155

uncultured_Caudovirales_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057407129.1\|3613699_3614371_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	8.7e-107	92.4
WP_003343442.1\|3614723_3615632_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_057407130.1\|3615617_3616397_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_004417288.1\|3616412_3617714_-	MFS transporter	Q6JIH2	Burkholderia_virus	8.2e-61	36.5
WP_003317940.1\|3617948_3618341_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.8e-56	81.5
WP_004417284.1\|3618342_3618705_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	8.7e-37	61.7
WP_003395712.1\|3618704_3619004_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.2e-29	62.6
WP_003411635.1\|3619000_3619336_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.0e-44	79.3
WP_057407131.1\|3619332_3620334_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.3e-163	84.2
WP_057407132.1\|3620430_3621429_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_044313373.1\|3621479_3622874_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003317946.1\|3622874_3624155_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.1e-97	45.8

DBSCAN-SWA_4

5264239 : 5298064

Pseudomonas_phage(60.0%)

tRNA,plate,bacteriocin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057407249.1\|5264239_5265451_-\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
WP_003422785.1\|5265652_5267080_+	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	4.2e-18	44.7
WP_003316311.1\|5267083_5268178_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_002551953.1\|5268239_5268590_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	7.4e-25	50.5
WP_003411695.1\|5268903_5269938_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_003316309.1\|5270071_5270500_+	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_024683979.1\|5270598_5271513_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_003341077.1\|5271569_5272346_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_003316306.1\|5272449_5272788_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_057407247.1\|5272909_5273557_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA
WP_003316303.1\|5273626_5274421_-	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_003372688.1\|5274663_5275086_-	OsmC family protein	NA	NA	NA	NA
WP_057407245.1\|5275288_5275933_+	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_016569116.1\|5275944_5276640_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_003316298.1\|5276674_5277511_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.3e-69	56.9
WP_003316297.1\|5277507_5278557_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	5.3e-111	58.0
WP_003341087.1\|5278578_5279178_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.0e-74	64.7
WP_057407243.1\|5279589_5280102_-	lysozyme	B5TK84	Pseudomonas_phage	9.4e-29	49.7
WP_016569118.1\|5280098_5280644_-	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	5.3e-70	73.9
WP_010419610.1\|5280697_5280847_-	hypothetical protein	NA	NA	NA	NA
WP_057407241.1\|5282527_5283127_-	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	4.9e-85	71.9
WP_024674763.1\|5283114_5284155_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	1.9e-132	70.3
WP_057407237.1\|5284144_5284543_-	hypothetical protein	B5TK74	Pseudomonas_phage	3.1e-43	64.4
WP_057407235.1\|5284539_5285052_-\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	3.7e-65	74.4
WP_057407234.1\|5285048_5286176_-\|plate	baseplate protein	B5TK72	Pseudomonas_phage	1.2e-111	58.7
WP_057407233.1\|5286179_5287694_-	hydroxyacid dehydrogenase	B5TK71	Pseudomonas_phage	2.4e-104	42.0
WP_058877214.1\|5287690_5290219_-\|tail	phage tail tape measure protein	U5P420	Shigella_phage	1.1e-74	39.7
WP_103363454.1\|5290218_5290425_-	hypothetical protein	NA	NA	NA	NA
WP_003316280.1\|5290349_5290646_-\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	4.3e-34	76.0
WP_003316279.1\|5290642_5290990_-\|tail	phage tail protein	B5TK68	Pseudomonas_phage	8.6e-42	70.4
WP_057407230.1\|5291050_5292547_-\|tail	phage tail protein	B5TK67	Pseudomonas_phage	2.4e-234	80.1
WP_002551914.1\|5292565_5292754_-	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	1.2e-13	74.5
WP_003316276.1\|5292750_5293341_-	hypothetical protein	B5TK65	Pseudomonas_phage	1.1e-52	52.0
WP_003394900.1\|5293387_5293726_-	hypothetical protein	A0A059VJW1	Pseudomonas_phage	2.0e-19	57.9
WP_003411734.1\|5293706_5294096_-	hypothetical protein	A0A059VK40	Pseudomonas_phage	2.3e-43	76.4
WP_134943122.1\|5294224_5294632_-	hypothetical protein	NA	NA	NA	NA
WP_003316273.1\|5294755_5295586_-\|bacteriocin	lipid II-degrading bacteriocin	NA	NA	NA	NA
WP_010438983.1\|5295601_5295787_-	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	5.6e-08	71.1
WP_003422750.1\|5296053_5296497_-	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	3.5e-24	45.8
WP_057407229.1\|5296686_5297298_+	helix-turn-helix domain-containing protein	A0A0M4QWY1	Salmonella_phage	8.8e-50	49.2
WP_002551908.1\|5297451_5297700_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_003316268.1\|5297821_5298064_+	transcriptional regulator	A0A2H4J8B4	uncultured_Caudovirales_phage	1.9e-16	51.2

DBSCAN-SWA_5

5396469 : 5426704

Bacillus_virus(20.0%)

protease,transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003393604.1\|5396469_5396928_-\|transposase	transposase	NA	NA	NA	NA
WP_003402189.1\|5397052_5398156_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_010407068.1\|5398938_5399886_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003316165.1\|5399953_5400799_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_003316164.1\|5400795_5401974_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.2e-25	36.4
WP_024692062.1\|5402234_5403488_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.6e-101	53.7
WP_003316161.1\|5403505_5404756_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_003316160.1\|5404771_5405068_+	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_057406991.1\|5405064_5408085_+	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_057406992.1\|5408135_5408768_+	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_003319123.1\|5408965_5409823_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_003316157.1\|5409934_5411134_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	2.2e-12	27.7
WP_057407085.1\|5411189_5412212_-	RHS repeat-associated core domain-containing protein	A0A1W5K0N1	Bacteriophage	2.1e-27	42.9
WP_057407084.1\|5412331_5418148_-	hypothetical protein	NA	NA	NA	NA
WP_024691901.1\|5418328_5418892_+	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_057407083.1\|5419296_5420190_-	acyltransferase	NA	NA	NA	NA
WP_003393621.1\|5420383_5420887_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_004415666.1\|5421082_5421712_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003316145.1\|5421781_5421964_-	hypothetical protein	NA	NA	NA	NA
WP_057407082.1\|5421960_5423094_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_024649532.1\|5423215_5424199_-	FecR family protein	NA	NA	NA	NA
WP_057407081.1\|5424195_5424714_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_046265637.1\|5424997_5426704_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.9e-49	29.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013183

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection