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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013723 Listeria monocytogenes strain Lm 3136 chromosome, complete genome 2 crisprs cas3,DinG,WYL,csa3,casR 0 1 6 0

Results visualization

1. NZ_CP013723
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013723_1 2754766-2755350 Orphan NA
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013723_2 2793937-2794225 Orphan I-A
4 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP013723_2 2.3|2794096|35|NZ_CP013723|PILER-CR,CRISPRCasFinder,CRT 2794096-2794130 35 MH341453 Listeria phage PSU-VKH-LP041, complete genome 10139-10173 1 0.971
NZ_CP013723_2 2.3|2794096|35|NZ_CP013723|PILER-CR,CRISPRCasFinder,CRT 2794096-2794130 35 NC_009813 Listeria phage B054, complete genome 10139-10173 2 0.943

1. spacer 2.3|2794096|35|NZ_CP013723|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 1, identity: 0.971

gcgatttttgtcaaagggacagcgatgggttacaa	CRISPR spacer
gcgatttttgtcaaaggaacagcgatgggttacaa	Protospacer
*****************.*****************

2. spacer 2.3|2794096|35|NZ_CP013723|PILER-CR,CRISPRCasFinder,CRT matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 2, identity: 0.943

gcgatttttgtcaaagggacagcgatgggttacaa	CRISPR spacer
gcgatttttgtcaaaggaacggcgatgggttacaa	Protospacer
*****************.**.**************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 465468 : 472891 8 Hokovirus(33.33%) NA NA
DBSCAN-SWA_2 604805 : 664296 59 Bacillus_virus(16.67%) tRNA,protease NA
DBSCAN-SWA_3 1157121 : 1165407 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_4 1680101 : 1720815 65 Listeria_phage(94.83%) tail,terminase,holin NA
DBSCAN-SWA_5 1864103 : 1871947 7 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_6 2382613 : 2389138 10 Listeria_phage(33.33%) tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage