CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013723	Listeria monocytogenes strain Lm 3136 chromosome, complete genome	2 crisprs	cas3,DinG,WYL,csa3,casR	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013723_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013723_1

2754766-2755350

Orphan

Consensus_repeat	Method
GATGTAAGTNATTTTGATACNAGTTCAGTAACTNATATG	CRT

7 spacers

The CRISPR arrays of NZ_CP013723_1

>merge|NZ_CP013723|1|2754766-2755350|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATGTGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTGGATGTAAGTCATTTTGATACAAGTTCAGTAACTAATATGTCTTACATGTTTTATGATAATAGAAATCTTGAGGTGCTGGATGTAAGCAACCTTGATACCAGTTCAGTAACTAATATGTATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTGGATGTAAGTCATTTTGATACGAGTTCAGTAACTGATATGTATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTAGATGTAAGTAATTTCGATACCAGTTCCGCTACTGCAATGGTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTGGATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATGCGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGCGTTAGATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATGGCTGCCATGTTTTCTGATAATGAAAAAGTGGAGAAGCTTGATTTAAGTACCTTTGATACCAGTTCAGTGACTAACATG

>NZ_CP013723|1|1|2754766-2755350|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATG	TGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTG
GATGTAAGTCATTTTGATACAAGTTCAGTAACTAATATG	TCTTACATGTTTTATGATAATAGAAATCTTGAGGTGCTG
GATGTAAGCAACCTTGATACCAGTTCAGTAACTAATATG	TATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTG
GATGTAAGTCATTTTGATACGAGTTCAGTAACTGATATG	TATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTA
GATGTAAGTAATTTCGATACCAGTTCCGCTACTGCAATG	GTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTG
GATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATG	CGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGCGTTA
GATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATG	GCTGCCATGTTTTCTGATAATGAAAAAGTGGAGAAGCTT
GATTTAAGTACCTTTGATACCAGTTCAGTGACTAACATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013723.1\|WP_003721242.1\|2744739_2745687_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP013723.1\|WP_010989429.1\|2758437_2758722_+\|DUF3130-domain-containing-protein	unknown	unknown	gnl\|CDD\|288220
NZ_CP013723.1\|WP_031665242.1\|2749948_2751499_+\|hydantoinase/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|223223
NZ_CP013723.1\|WP_003721260.1\|2760485_2760758_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013723.1\|WP_031671594.1\|2758722_2759091_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013723.1\|WP_003733213.1\|2761536_2761779_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013723.1\|WP_003721261.1\|2760785_2761133_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013723.1\|WP_009931585.1\|2756243_2756717_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013723.1\|WP_054314226.1\|2752318_2753857_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|368260
NZ_CP013723.1\|WP_054314228.1\|2741430_2743590_-\|transglutaminase	unknown	unknown	gnl\|CDD\|376628
NZ_CP013723.1\|WP_009911497.1\|2747571_2748855_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|271377
NZ_CP013723.1\|WP_003721239.1\|2740558_2741314_-\|DUF4866-family-protein	unknown	unknown	gnl\|CDD\|379782
NZ_CP013723.1\|WP_077310202.1\|2759087_2760464_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368093
NZ_CP013723.1\|WP_003721255.1\|2757630_2757897_+\|transposase	unknown	unknown	unknown
NZ_CP013723.1\|WP_003721245.1\|2748855_2749956_+\|DUF917-domain-containing-protein	unknown	unknown	gnl\|CDD\|226065
NZ_CP013723.1\|WP_003733941.1\|2757249_2757555_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273478
NZ_CP013723.1\|WP_009931584.1\|2756736_2757222_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013723.1\|WP_047932815.1\|2745842_2747438_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306
NZ_CP013723.1\|WP_010989471.1\|2739872_2740538_-\|DUF1275-domain-containing-protein	unknown	unknown	gnl\|CDD\|226146
NZ_CP013723.1\|WP_054314227.1\|2743586_2744735_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635

Protein	Function_ID	Function_description	E-value
NZ_CP013723.1\|WP_003721242.1\|2744739_2745687_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	7.47241e-102
NZ_CP013723.1\|WP_010989429.1\|2758437_2758722_+\|DUF3130-domain-containing-protein	gnl\|CDD\|288220	pfam11328, DUF3130, Protein of unknown function (DUF3130. This bacterial family of proteins has no known function.	5.90103e-42
NZ_CP013723.1\|WP_031665242.1\|2749948_2751499_+\|hydantoinase/oxoprolinase-family-protein	gnl\|CDD\|223223	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	1.01074e-105
NZ_CP013723.1\|WP_054314226.1\|2752318_2753857_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|368260	pfam05043, Mga, Mga helix-turn-helix domain. M regulator protein trans-acting positive regulator (Mga) is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This domain is found in the centre of the Mga proteins. This family also contains a number of bacterial RofA transcriptional regulators that seem to be largely restricted to streptococci. These proteins have been shown to regulate the expression of important bacterial adhesins. This is presumably a DNA-binding domain.	1.23949e-19
NZ_CP013723.1\|WP_054314228.1\|2741430_2743590_-\|transglutaminase	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	6.00915e-28
NZ_CP013723.1\|WP_009911497.1\|2747571_2748855_+\|cytosine-permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	7.88402e-95
NZ_CP013723.1\|WP_003721239.1\|2740558_2741314_-\|DUF4866-family-protein	gnl\|CDD\|379782	pfam16160, DUF4866, Domain of unknown function (DUF4866). This family consists of uncharacterized proteins around 250 residues in length and is mainly found in various human gut Firmicute species and abundant in human gut metagenomic datasets. The function of this family is unknown.	1.0462e-120
NZ_CP013723.1\|WP_077310202.1\|2759087_2760464_+\|hypothetical-protein	gnl\|CDD\|368093	pfam04740, LXG, LXG domain of WXG superfamily. This domain is present is the N-terminal region of a group of polymorphic toxin proteins in bacteria. It is predicted to use Type VII secretion pathway to mediate export of bacterial toxins.	7.82982e-36
NZ_CP013723.1\|WP_003721245.1\|2748855_2749956_+\|DUF917-domain-containing-protein	gnl\|CDD\|226065	COG3535, COG3535, Uncharacterized conserved protein [Function unknown].	0
NZ_CP013723.1\|WP_003733941.1\|2757249_2757555_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	4.04229e-05
NZ_CP013723.1\|WP_047932815.1\|2745842_2747438_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.29435e-59
NZ_CP013723.1\|WP_010989471.1\|2739872_2740538_-\|DUF1275-domain-containing-protein	gnl\|CDD\|226146	COG3619, COG3619, Predicted membrane protein [Function unknown].	6.55182e-68
NZ_CP013723.1\|WP_054314227.1\|2743586_2744735_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	3.11266e-53

>NZ_CP013723.1|WP_054314226.1|2752318_2753857_+|helix-turn-helix-domain-containing-protein
MREYLDSKSQKKVELLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKAFSIVHSAPNLSYTLKISDNCSIQLIINAYIRESPKFQILETLLLASFPNLQALAKKVHVSYSGIKKEIKELNEELRERNLSISTGNQVEITGDEFSLRIFYAFLFLVTYSGDRWPFSFVQYDEITDLLESCPKEIYRANSIDKGMMIHYYVAMHLLRDRMNCQIDTTRQFKVALYKACTEESKKSESAFIKKVAKQLPNRNYKEITYTTQIILSTIVAFGSYSSIEKMPSFFYMDEQLEEMGFMKLVDFASERVNDNLSIPFSEKEMELLRYSFASINYRYFLLDNLINRFNNIVPGYTDLDRNIRKIHKVNHLEPLISQLVNLKEMRLLKPFEERLASDYLIILDKRIDFSIHTLPIKVTILSTISNETAVFDFMRYFSSYYNLEIINQVDPVVDLYISDFSVSPEVLTSLRINQPIVYVNTRWLESDYVKINDNLAKIARKKFIANKKD
>NZ_CP013723.1|WP_031665242.1|2749948_2751499_+|hydantoinase/oxoprolinase-family-protein
MYKIGIDVGGTNTDAVILDENQQLIHSVKMPTSEDIETGITESLHRVLSETGIDRSKVTHAMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPEDMVGFLSGKYKLTGGGYEYDGQVLSEINEAEIRETLASWKGEVESVAVVGVFSSLKNDQELAVQKIIEEELGADIPVSISSSVGSVGLIERENATILNAALFKVIAATSDGFEKALEQEGIEHAEIYLCQNDGTLMSLNYARQFPILTIACGPTNSIRGASYLAGLKDAMVLDVGGTTSDIGVLTDGFPRESSLAVDVGGVRTNFRMPDIISIGLGGGSIVREKDGDITIGPDSVGYRISEEALVFGGKTMTTTDIAVRLGMAEIGNPELVAHIPTDFAEKAYKKIAEMTEDAIDKMKTSSGSVSLVLVGGGSVIIPDEISGVAQIFRDKNGPVANAIGASISQISGQYEQIYIYSQIEREEALQDAEQKAREQATLAGAVTDSIEVVEVEEIPLAYHPGNATRLRVKVVGNLV
>NZ_CP013723.1|WP_003721245.1|2748855_2749956_+|DUF917-domain-containing-protein
MRYLDEQAIENIAIGAAFLGTGGGGDPYIGKMMALTAIKKHGPIKLLSPEEIADDDYFIPAAMMGAPSVLIEKFPKGDEFVRVFEKLGRYVGKEVKGTFPMEAGGVNSMIPIVVAAQLGLPMVDCDGMGRAFPELQMVTFHLDGISATPMAITDEKGNIGIMETIDNKWTERLARVTTVEMGASSLVSLYPCNGAQIKQSSIKNIVTLSEEIGKVIRETSMDEAEKLQKLLDVTHGYHLFEGKITDVVRETRAGFNFGRVKIDGLNKDTNSEVIVHFQNENLVAEKNGEPIAITPDLICMVDLETLMPVTTEALKYGKRVRVMALPADDAWRTDKGIETVGPRYFGYDVDFEPLEELVKKEERRHV
>NZ_CP013723.1|WP_009911497.1|2747571_2748855_+|cytosine-permease
MTENKTVEQAQSWQSLAFVWTGAMICVPSLLVGGTLISGMPLWEAILIALLGYGVIVVFMIYQGMQSSDLGIPAVSVASQVFGEQGSKKIISILLAIACLGWFGIQANVCGAAFSQFLGIYGINLPVPVSSLIWGVIMLLSAIYGIRILSILNYIAVPILLFVCIYGLVVSLNNGGLAVVENYKPAGSMSFMTGLAITIGSFALGAVIAGDYSQYTKSRKDVVKAAIVGILPSGVLMIAVGAILALTAGTADISVVFTNLGLPVLGIIGLILAAWTTNAVNAFSGGIAIINVFNISEKYHKVAVAIAGGLGTVLAVIGILNHFVPIMSVLSAMVPPVAGVMIASYWIVQKGDKSKWAPVPGVNWLGVTSWLVGAVIAGIPVILTFFPALPQLPNQPLIGIILSLAVYLVGAKVLSGKTNNVENLEGK
>NZ_CP013723.1|WP_047932815.1|2745842_2747438_+|PucR-family-transcriptional-regulator
MSVKLADLMKLPSLKEARVVSGKSGLSKLVSSISVLEYTEVALLEDDLFDNDEFYGSEIVVSAFVNIREDVEAQCRTIERLHKVGEVALILYYVGIFVPKIDQKLIDFANELDFTIIVMPENEMSLRYSEVIYEVVEAIVKQEMTDTNFVTESLEQISSVRPPQRNIDTTLKILSDRTHSSLVLTDNSFQVINSITWPRTRHWDFERIIEASKQIGEHELVQLHLDERDFYTARKPIFQDGMQAMHLFMMKEKGVLTADVVMQITEVVQVFMNLWGRNYVEISTAELMKAILNDESVKMRRLGKILNVDVSSIKWMWLVKTEEIRNNEQVLAELKSFVASHFQVSLIDLFEDNIVVLLDNSVAQRDRTHTANEFAMMMKEHGIDLKITVCQGMAQTSDVQSAYSLVNEYKNAANAIYANKSIYSLQEIDFAAKCVEIVDRGELAIAEQMRPLKSLEDNDELIETLSVFLLEGESNYNQAAELLFLHKNTIKYRIQRINELLQYPATKIPESYNLYLAVAIRRLLGGNNNNK
>NZ_CP013723.1|WP_003721242.1|2744739_2745687_-|MoxR-family-ATPase
MSIEPSIKIEEIINEVEKVIVGKRHVVKLSLTALLAGGHVLLEDVPGVGKTMMVRTLSKTIGVSFKRIQFTPDLLPADVTGVSIFNPETRDFEFRPGPVMGNIVLADEINRTAPRTQAALLEGMAENSVTVDGITRKLANPFFVMATQNPIEYEGTYALPEAQLDRFLLKINIGYPTVEEEMQLLTLKQYQDPLDQTQQVVTLSELLDLKNKAKQVFIDDVLKNYIIRLVDATRKHPSVALGISPRGSLAFMQAAQAFALIEGRDYVIPDDIQYLAPYIFTHRLILKSEAYYNEETAESIIASILKNTSVPVEKR
>NZ_CP013723.1|WP_054314227.1|2743586_2744735_-|DUF58-domain-containing-protein
MLKKRLLLASRWIIMLIIYAGLWTYTLFQGDTASWFLTYFFSFILLLLFLSSIYPLKAWKVNRSFVKNTYHDGDLIDMQVSFTRKSRYPVGYLLFQQKIPATFGKVRARQQVVYPLFKKQFTVTLAGFVGVRGIHSFPPVDVETSDAFGLLERSRQLSSEKSLTIYPTYFPNVLEKISEASPENERNAAYWTLKKNSNLHSLREFSSGDRISLIDWKSSAKSDQLMTREFENSATSRLSVIFYGASHPNFELSLRAAYSFIRKISEENGEIRVTLLGDQTSKFAPAKGTSRLQDISTAFAEIAPVDSLTLQESLDSNLHSGEKILLFTPCMDTMLMQKVTRLTDNKQLQIITFQSEHSKAMDAPAIFLEQANLLSRWERETK
>NZ_CP013723.1|WP_054314228.1|2741430_2743590_-|transglutaminase
MKRYLTLVMLFILSVLLISEWIYPFAELTELSTATWIILFITLSLGSFFLRLKYYWTIPLHVVMIIIVSGIYYAKGGILAGNWLGSFFQITFNSFRDMVQFRSSDISMDFILIVFLIALWLLSYITTYSILRKQRIMSVLVLTVAYLAVINTFTDYNSNWAIVRTVLEGFLLLHLALASRIATPNRISADSLKRNGLFYHGFVILLLAVFVFSSLMLPKKAPIFPDPIPTIKNALGINTTRTVGYSEDDTTLGGALKKDNATVFTARAEKGHYWRVESKTVYTGTGWANANSGDVISFSSGDNFPIQLTEQTTGATNTAEISFASSSDYMPYPYGTQAVNGAVDSFSANLTIERVGPVDTIKNYTVQLKTPVYNIEKMQNADFSTLSNAFVSQYTQTPKDLPDRVTKLANKVTKDADSIYDKTKAIESYLSTSGTFTYSTDDAKETPMGADYVDQFLFETQIGYCDNFSTSMVVMLRSLGIPARWAKGYTPGEGEKKENDAKTTYTITNNNAHSWPEVFFPGTGWVPFEPTATFSNPENFQEPTTETANKPETPNDSTSTPETPNTPDKTPEQDNGSSSTGETPKKEEPKTETATSNVEIPSWVWWIPAGLVVALLALAIVFRRRIRGYLLLRSLRNSPEFGKTYHRLMKLLASYGYVRESSETLRHFGTRVDAELTTTEFSRLTKMYEAQVYSNNLTEKVITAEETQLVQQVIARLTK
>NZ_CP013723.1|WP_003721239.1|2740558_2741314_-|DUF4866-family-protein
MTTIFPKEQNVTPLFEQILANPTACRRFKDVFLDNLESYQETRGFEKDDTLFAKIILSAYRQSDVSALLLGVCGRTLFELLRQAFLIPKKLTVDNPFFLTDKEGNFIAKKDDISNREQEKFQEIYQSDLHHSETTIFLVDDDDIVHSYEPDFSISTKRINKKRGILVLYSLPNTLKLEMTESEVYAFIWKTFLHIQEIIPSSRIFYGQETSENADELGVFLPIHHFEKKMLQNIEQVNELVDALREQMVNK
>NZ_CP013723.1|WP_010989471.1|2739872_2740538_-|DUF1275-domain-containing-protein
MARTRQISESIGLGLLLALAGGFMDAYSYIERGQVFANAQTGNILLFGINISEGNWAIAIQYFWPVVSFTVGIALSEVIHRRDIRRLHWRQLSVLIEAVILIGVAFIPLDHNLIANSLISFVCGIQVESFRKMHGRGVATTMCIGNLRSATQNLCDYFEYKEKQYLHNSFLYFSVILSFIIGAVVGNFFIQLFAQYAILVCAFLQLIAFMMMFIDRESKII
>NZ_CP013723.1|WP_009931585.1|2756243_2756717_+|hypothetical-protein
MKKKKVVVISLLLLLVSVIGISSYFLFKDKINLLDVDPSAVEWNGKKQKDTSGEENTIAIPGFEKVTLYANETKQAVNFHNPEINDCYFKISLIHPDGSVLWRSDLIEPGKGMYSIELEKTLAVGEYENAVLKYECFSLNDQSPLNGSEINLKLVVV
>NZ_CP013723.1|WP_009931584.1|2756736_2757222_+|hypothetical-protein
MNKLVLSTLSVAAMGMVIFSGGTAYAADKEGNTVVEYSVEGDYTLVVPEKVNLSNDNATEMSVKTINRNLEPGKEVEVTLSSGLSADGEIELERVGATSDVITSSFKSNNSTVTMANPVIGSFSGYAIEETEVSKIQIGSPQGDKKAGAYQTTLTFTAAFK
>NZ_CP013723.1|WP_003733941.1|2757249_2757555_+|LPXTG-cell-wall-anchor-domain-containing-protein
MKRKLVLAMVLISFCGMFLLSPERVQASQTVVEVFISEDDLDVSEENIQEIPKKELAASSDKDNKQHMLPKAGDTVTNYTLLGLVLVLIWLIMQRKRKKKE
>NZ_CP013723.1|WP_003721255.1|2757630_2757897_+|transposase
MARIEYGEEIQKSLLVLYSRGSTIDSICKEYGIPRYEFHKWMKLHDADKLETKEVKTLLQIRELKQQKNKLEEEILFLNEAINLLESP
>NZ_CP013723.1|WP_010989429.1|2758437_2758722_+|DUF3130-domain-containing-protein
MREIKVDERTFQQHATKLASESTGSYLPLKNGNMAYSKANSIDQLRSALIELVDVVEDFQHVTKKDASRLKKMGIAYAKQDQLMGQKINQLEVR
>NZ_CP013723.1|WP_031671594.1|2758722_2759091_+|hypothetical-protein
MDSAHSQLEQQLQQIKKAKITAETDADQTRRKQNEQDWLEEDSNQLTQEKRVLLDFLRSGWQGEEASGFHRYLEEQQHEESQAWRRDLQDKRTDLDKELQENKDKLHTLETKQATLQKEWSK
>NZ_CP013723.1|WP_077310202.1|2759087_2760464_+|hypothetical-protein
MSRIDIAELNDFLHGLRSSNAEAKAMIRKIKEAAMDYAQDNSLKGEAVSTSKRYFSSTYKSICQSIIEALDESEERLAQYIREFGSQVDSSPSARIDAEILQEAMAKVSQLQRKEEDLHRQLTAPNTKPDMQQVYAVKSRSVHTQLLKAIEQENILEKYLAFEQSHGQFFSALDELIRATARAVQELLHHVSFNDKTGTYSVPKSAANSLLLMKKARDKARKENDKDPYPKAFEDYTVLAYTYVNDQGETVTMWLLEKDGKRVENKELQDFLEKHGQELDPLLYTNLSGEELERKVNDSWKEGINYLNGQKVSGVSGATLRSSAYVASMKDWTDDAGLTDMALGLGFGIAAARNKVIIPKKTSTAKSSGKDIFNYTDKVNEHMANLDRAVPVQTLKEAIKGGIPMPDPRGSRATMYYSEIYINGKKYNFEVLYDNTTNTIYHFKYDRRPLGPLSAISK
>NZ_CP013723.1|WP_003721260.1|2760485_2760758_+|hypothetical-protein
MTKKEQLYFLLNGLDNGEIEINNFTNQFMKIFDLEIDYDELSKEEYTILGNVSDMAARFSDSEEDLKLPNVYYSEKQIREEVTRSLEALA
>NZ_CP013723.1|WP_003721261.1|2760785_2761133_+|hypothetical-protein
MQKDTYNGIRLSVIQLIDSKKENLKENNIKLTIIKNEKDGYVVELDNDKCMAEIVVEEPTYAPYRYISFEVVSLMDGKVKIIYSWYDDETSQWSDIEKELNKGIQFLNNFKTMEQ
>NZ_CP013723.1|WP_003733213.1|2761536_2761779_+|hypothetical-protein
MKRIILTSTLIVWTIVCIYMSISMVSNNTGIAFPIWLHIILLICFLATSIVNVKKKEYLWSTMLFEGELVVLLSLIIVLV

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Crispr_ID: NZ_CP013723_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013723_2

2793937-2794225

Orphan

I-A

Consensus_repeat	Method
GTTTTAGTTACTTATTGTGAAATGTAAAT	PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAAT	CRISPRCasFinder
GTTTTAGTTACTTATTGTGAAATGTAAAT	CRT

4 spacers

The CRISPR arrays of NZ_CP013723_2

>merge|NZ_CP013723|2|2793937-2794225|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGTTACTTATTGTGAAATGTAAATCGATAAAAAAGATATTAGTAATTTATTTGCAATTTAGTTTTAGTTACTTATTGTGAAATGTAAATTGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGCGTTTTAGTTACTTATTGTGAAATGTAAATGCGATTTTTGTCAAAGGGACAGCGATGGGTTACAAGTTTTAGTTACTTATTGTGAAATGTAAATTTACCACCAAAGTCCCTACACTCAATACCACCAAAGCGTTTTAGTTACTTATTGTGAAATATAAAT

>NZ_CP013723|2|1|2793937-2794225|PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAAT	CGATAAAAAAGATATTAGTAATTTATTTGCAATTTA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC
GTTTTAGTTACTTATTGTGAAATATAAAT

>NZ_CP013723|2|1|2793937-2794225|CRISPRCasFinder
GTTTTAGTTACTTATTGTGAAATGTAAAT	CGATAAAAAAGATATTAGTAATTTATTTGCAATTTA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC
GTTTTAGTTACTTATTGTGAAATATAAAT

>NZ_CP013723|2|2|2793937-2794225|CRT
GTTTTAGTTACTTATTGTGAAATGTAAAT	CGATAAAAAAGATATTAGTAATTTATTTGCAATTTA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC
GTTTTAGTTACTTATTGTGAAATATAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013723.1\|WP_045131588.1\|2804202_2805207_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_CP013723.1\|WP_003721298.1\|2795874_2796234_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131113
NZ_CP013723.1\|WP_009932856.1\|2796240_2796699_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_CP013723.1\|WP_009930756.1\|2789982_2791029_+\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
NZ_CP013723.1\|WP_054314221.1\|2797080_2798916_+\|lmo0514-family-class-1-internalin	unknown	unknown	gnl\|CDD\|380190
NZ_CP013723.1\|WP_009931218.1\|2802655_2804071_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP013723.1\|WP_003721294.1\|2791352_2792624_+\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
NZ_CP013723.1\|WP_003721290.1\|2788926_2789325_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013723.1\|WP_003721303.1\|2801044_2801860_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP013723.1\|WP_003721297.1\|2795169_2795850_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NZ_CP013723.1\|WP_003721291.1\|2789335_2789986_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
NZ_CP013723.1\|WP_003727296.1\|2802140_2802509_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
NZ_CP013723.1\|WP_003721293.1\|2791044_2791338_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
NZ_CP013723.1\|WP_003733190.1\|2792763_2793699_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP013723.1\|WP_010989498.1\|2785748_2787809_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP013723.1\|WP_012951247.1\|2794484_2795063_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013723.1\|WP_003721301.1\|2799016_2799448_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP013723.1\|WP_003733192.1\|2787812_2788415_+\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223865
NZ_CP013723.1\|WP_010989497.1\|2784989_2785640_+\|transaldolase	unknown	unknown	gnl\|CDD\|223254
NZ_CP013723.1\|WP_003733191.1\|2788442_2788910_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129

Protein	Function_ID	Function_description	E-value
NZ_CP013723.1\|WP_045131588.1\|2804202_2805207_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.15304e-20
NZ_CP013723.1\|WP_003727296.1\|2802140_2802509_-\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	2.33548e-41
NZ_CP013723.1\|WP_009932856.1\|2796240_2796699_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	9.15558e-13
NZ_CP013723.1\|WP_009930756.1\|2789982_2791029_+\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	0
NZ_CP013723.1\|WP_054314221.1\|2797080_2798916_+\|lmo0514-family-class-1-internalin	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	4.35017e-120
NZ_CP013723.1\|WP_009931218.1\|2802655_2804071_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.18163e-80
NZ_CP013723.1\|WP_003721294.1\|2791352_2792624_+\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	7.01085e-178
NZ_CP013723.1\|WP_003721303.1\|2801044_2801860_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
NZ_CP013723.1\|WP_003733192.1\|2787812_2788415_+\|SIS-domain-containing-protein	gnl\|CDD\|223865	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane].	1.15952e-75
NZ_CP013723.1\|WP_003721291.1\|2789335_2789986_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	4.74405e-108
NZ_CP013723.1\|WP_003721293.1\|2791044_2791338_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.06007e-27
NZ_CP013723.1\|WP_003733190.1\|2792763_2793699_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	1.26262e-153
NZ_CP013723.1\|WP_010989498.1\|2785748_2787809_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.36772e-80
NZ_CP013723.1\|WP_003721298.1\|2795874_2796234_-\|hypothetical-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	5.62162e-67
NZ_CP013723.1\|WP_003721301.1\|2799016_2799448_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
NZ_CP013723.1\|WP_003721297.1\|2795169_2795850_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	7.71833e-60
NZ_CP013723.1\|WP_010989497.1\|2784989_2785640_+\|transaldolase	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	5.85703e-62
NZ_CP013723.1\|WP_003733191.1\|2788442_2788910_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	2.76446e-37

>NZ_CP013723.1|WP_003733190.1|2792763_2793699_+|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSNIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>NZ_CP013723.1|WP_003721294.1|2791352_2792624_+|PTS-galactitol-transporter-subunit-IIC
MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLTVGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVFVAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAVLSSIINMAIIFKIADWTQKDVEDVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQSRLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVISEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPLADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIPKDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL
>NZ_CP013723.1|WP_003721293.1|2791044_2791338_+|PTS-sugar-transporter-subunit-IIB
MKKKRIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQEVASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD
>NZ_CP013723.1|WP_009930756.1|2789982_2791029_+|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGKRDLRYEEADMPTIEEPDDVILKVKTVGICGSDISRYSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPNELDYEAAALVEPSAVVVHGFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKVLFFPE
>NZ_CP013723.1|WP_003721291.1|2789335_2789986_+|ribulose-phosphate-3-epimerase
MAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNDELAKECTLAGADLIVVGSYLFEGDIEANLEKLAKGVLTE
>NZ_CP013723.1|WP_003721290.1|2788926_2789325_+|hypothetical-protein
MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMVVVMIYATTILYAKWTLAYYLPKKMSQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNAPESTKLLHFSQQKLKLSDKEKLQKIIEIQS
>NZ_CP013723.1|WP_003733191.1|2788442_2788910_+|PTS-sugar-transporter-subunit-IIA
MDVLEYFKEEMVRFSNEQNKEKLLAEMAEQLCEVGAVKPSYKDAVIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVRIVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN
>NZ_CP013723.1|WP_003733192.1|2787812_2788415_+|SIS-domain-containing-protein
MDKQAILNNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
>NZ_CP013723.1|WP_010989498.1|2785748_2787809_+|BglG-family-transcription-antiterminator
MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVNEWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLTSKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKVLTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYLLSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLTTNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIKYQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQNDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFSSIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADIKDPNAIRDGIIDILSANIATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPLLLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYFSETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKIMQTINQLVIREDE
>NZ_CP013723.1|WP_010989497.1|2784989_2785640_+|transaldolase
MHLDSANLDDVKKIQASSIFKGITTNPTILVKEKCNRQTAINRILELTDKQVFVQTVGFTYEEILADARMLLTMFGKDKIAIKIPAHEAGTNVIDTLKKEDKTIQILGTAIYSADQAITAALAGADFVAPYVNRMSAANIDPFKEITQMRHFFDKKALKTQIMAASFKHSGQVMQAYESGADTVTIPYEIYSQMTNKVLAVEAIRVFNEDAVLYEK
>NZ_CP013723.1|WP_012951247.1|2794484_2795063_+|hypothetical-protein
MKKILVPILLLATILASCSSPNEKITKDTKISKTNTIRADYKVPKDIKELEDDSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYLSDGKYVAVENYIALDKEQEYTIFLGEKDKDTYPLSSLGYGKFGGSLKEDQAVLADFNILGEVQKFDFISENTEEVKNYQLIKEQVAGKYK
>NZ_CP013723.1|WP_003721297.1|2795169_2795850_+|type-1-glutamine-amidotransferase
MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLLFFPESLNVFHWHQDTFALPTGSTRLFASEGCLNQAFLYGENIIGLQFHFEMEKAGIETILRIDEAFITPGKYVQSVEVMREKDVPEDNKQMLEAILDYLINPKTI
>NZ_CP013723.1|WP_003721298.1|2795874_2796234_-|hypothetical-protein
MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPDGDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
>NZ_CP013723.1|WP_009932856.1|2796240_2796699_-|MarR-family-transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTSAGKELENELGAAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>NZ_CP013723.1|WP_054314221.1|2797080_2798916_+|lmo0514-family-class-1-internalin
MKKALKLFLATICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSINNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSARLSITEDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMNSYTISSGTYDQYFDISHTLDLTADESFDYNQYDATSEEQFLKDVHAETDDGTAVKSDFDQVVKLNVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVDPVPPTPEIKPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS
>NZ_CP013723.1|WP_003721301.1|2799016_2799448_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NZ_CP013723.1|WP_003721303.1|2801044_2801860_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NZ_CP013723.1|WP_003727296.1|2802140_2802509_-|DUF1304-domain-containing-protein
MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGFAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVAVLLV
>NZ_CP013723.1|WP_009931218.1|2802655_2804071_+|multidrug-efflux-MFS-transporter
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGESGWGSATVLVSIIVGGIALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPPKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGVGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK
>NZ_CP013723.1|WP_045131588.1|2804202_2805207_+|ROK-family-transcriptional-regulator
MAIPRDLKELNKKNIKSILRQQGAMTKAEIAEVTGLSVVTVNKLIRDLVENEEILEQDNSVATGGRRAVSYEINPNFQQVLVISLQEKWKKITYSFSVYNLLGEPEFVEDMSGEDLDITALKRNTKDIICAFPKISCVVIGVPGIEIGGKLRAMDFPLLLNVQLRETLEAEVNLPVLVETDTNAAILGYKNRPVKEENIVGLYYPERFPPGAGLLMNGEILKGQNGLAGEIKHMPLQVDWDNFDFSVDEIKAHIRKMALLTMSFYDPETIVLYTNFYFGQKDFMEELKEELKQVYPYAVLPEIVLSRKFTTDYRIGLLAFGIDYLENNMTDWRI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013723_2	2.3\|2794096\|35\|NZ_CP013723\|PILER-CR,CRISPRCasFinder,CRT	2794096-2794130	35	MH341453	Listeria phage PSU-VKH-LP041, complete genome	10139-10173	1	0.971
NZ_CP013723_2	2.3\|2794096\|35\|NZ_CP013723\|PILER-CR,CRISPRCasFinder,CRT	2794096-2794130	35	NC_009813	Listeria phage B054, complete genome	10139-10173	2	0.943

1. spacer 2.3|2794096|35|NZ_CP013723|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 1, identity: 0.971

gcgatttttgtcaaagggacagcgatgggttacaa	CRISPR spacer
gcgatttttgtcaaaggaacagcgatgggttacaa	Protospacer
*****************.*****************

2. spacer 2.3|2794096|35|NZ_CP013723|PILER-CR,CRISPRCasFinder,CRT matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 2, identity: 0.943

gcgatttttgtcaaagggacagcgatgggttacaa	CRISPR spacer
gcgatttttgtcaaaggaacggcgatgggttacaa	Protospacer
*****************.**.**************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

465468 : 472891

Hokovirus(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721506.1\|465468_465852_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7
WP_026749861.1\|465873_466857_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	4.1e-12	34.6
WP_026749862.1\|466871_467885_+	glycosyltransferase	A0A1V0SAH6	Catovirus	7.9e-11	32.0
WP_003721509.1\|468093_469584_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_003727000.1\|469595_470420_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	9.7e-68	52.6
WP_023549061.1\|470432_470741_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003732712.1\|470801_471206_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_077944318.1\|471334_472891_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	6.6e-17	28.1

DBSCAN-SWA_2

604805 : 664296

Bacillus_virus(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054314298.1\|604805_605945_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_054314297.1\|606025_606421_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003727524.1\|606571_606787_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003732794.1\|606905_607439_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003732795.1\|607456_608122_+	hypothetical protein	NA	NA	NA	NA
WP_014601429.1\|608383_608737_+	hypothetical protein	NA	NA	NA	NA
WP_140442807.1\|609018_609321_+	hypothetical protein	NA	NA	NA	NA
WP_003723884.1\|609435_610719_+	trigger factor	NA	NA	NA	NA
WP_003723886.1\|610904_612164_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_009924620.1\|612282_612849_+	type I signal peptidase SipX	NA	NA	NA	NA
WP_009924619.1\|612883_613453_+	type I signal peptidase SipY	NA	NA	NA	NA
WP_003723889.1\|613554_614097_+	type I signal peptidase SipZ	NA	NA	NA	NA
WP_003723890.1\|614106_614970_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_003723891.1\|614966_615752_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	3.0e-26	39.2
WP_003723892.1\|615885_616746_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_009924617.1\|617017_619096_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	1.4e-107	37.7
WP_009924616.1\|619158_620463_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_009911635.1\|620745_621648_+	tyrosine recombinase XerC	A0A097EYL9	Mycobacterium_phage	1.2e-13	28.6
WP_003724001.1\|621668_622208_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_010989722.1\|622221_623631_+\|protease	ATP-dependent protease ATPase subunit HslU	W6AS21	Erwinia_phage	4.9e-43	27.7
WP_003726695.1\|623651_624431_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_012951573.1\|624533_624953_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003724130.1\|624975_625287_+	hypothetical protein	NA	NA	NA	NA
WP_009932949.1\|625289_626162_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_054314295.1\|626203_626800_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003732802.1\|626957_627365_+	CoA-binding protein	NA	NA	NA	NA
WP_003723731.1\|627545_629513_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	6.7e-123	42.5
WP_031659513.1\|629509_631969_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	3.6e-102	31.6
WP_003723733.1\|632051_632519_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_010989724.1\|632848_634630_+	lmo1289 family class 1 internalin	NA	NA	NA	NA
WP_054314294.1\|634961_636758_+	class 1 internalin InlK	NA	NA	NA	NA
WP_012951576.1\|636791_638660_-	acetyltransferase	B5WZU0	Pseudomonas_phage	6.5e-43	31.9
WP_003723737.1\|638872_639571_+	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	1.3e-12	32.4
WP_003723738.1\|639803_641480_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_012951578.1\|641605_642523_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_003719566.1\|642645_642879_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_072219379.1\|642989_644213_+	GTPase HflX	NA	NA	NA	NA
WP_054314292.1\|644205_645432_+	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_003719570.1\|645635_646004_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003723435.1\|646074_647409_+	type I glutamate--ammonia ligase	A0A1V0SJ53	Klosneuvirus	2.0e-06	26.4
WP_003723436.1\|647552_648848_+	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	1.8e-145	61.6
WP_003723437.1\|648891_649413_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003723438.1\|649442_650057_-	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	9.3e-15	62.1
WP_003723439.1\|650213_650543_+	cell division suppressor protein YneA	NA	NA	NA	NA
WP_014601966.1\|650634_650862_+	DUF896 domain-containing protein	NA	NA	NA	NA
WP_031645059.1\|651008_653003_+	transketolase	NA	NA	NA	NA
WP_003723442.1\|653223_653463_+	YneF family protein	NA	NA	NA	NA
WP_054314291.1\|653513_654356_-	DUF2785 domain-containing protein	NA	NA	NA	NA
WP_003723444.1\|654374_655106_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	1.2e-80	59.1
WP_003723445.1\|655127_655634_-	ParB-like nuclease domain-containing protein	A0A220GKT8	Streptococcus_phage	4.0e-56	66.7
WP_003723446.1\|655643_656948_-	DUF3440 domain-containing protein	A0A220GKF8	Streptococcus_phage	9.5e-134	52.1
WP_072217143.1\|656937_658143_-	helicase SNF2	L0P6E9	Lactobacillus_phage	3.7e-92	47.1
WP_003723448.1\|658120_658495_-	hypothetical protein	NA	NA	NA	NA
WP_003723449.1\|658787_659516_+	UMP kinase	NA	NA	NA	NA
WP_003723450.1\|659515_660073_+	ribosome recycling factor	NA	NA	NA	NA
WP_003732812.1\|660302_661061_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	4.4e-22	42.1
WP_003727496.1\|661074_661863_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_010989733.1\|661877_663020_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_003723454.1\|663033_664296_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA

DBSCAN-SWA_3

1157121 : 1165407

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722243.1\|1157121_1157688_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.0e-25	35.9
WP_009933235.1\|1157684_1158734_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.0e-61	43.2
WP_058877360.1\|1158752_1160180_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	5.3e-53	31.7
WP_014602076.1\|1160164_1162384_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.3e-159	41.2
WP_003733240.1\|1162376_1163060_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_015454911.1\|1163063_1163309_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_054314363.1\|1163320_1164034_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	5.1e-41	37.8
WP_003733238.1\|1164114_1165407_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	7.2e-17	32.6

DBSCAN-SWA_4

1680101 : 1720815

Listeria_phage(94.83%)

tail,terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047934317.1\|1680101_1680335_-	hypothetical protein	A8ATX0	Listeria_phage	6.1e-36	97.4
WP_058877365.1\|1680774_1680984_+	hypothetical protein	A0A059T7Z0	Listeria_phage	2.7e-27	97.1
WP_012581436.1\|1681089_1681467_+	anti-CRISPR protein AcrIIA3	Q9T194	Listeria_phage	1.3e-67	99.2
WP_012581437.1\|1681498_1681849_+	AcrIIA2 family anti-CRISPR protein	Q9T195	Listeria_phage	1.2e-56	98.3
WP_047933338.1\|1681853_1682303_+	anti-CRISPR protein AcrIIA1	Q9T196	Listeria_phage	1.3e-74	98.0
WP_003723292.1\|1682374_1682974_-	N-acetyltransferase	Q9T197	Listeria_phage	1.0e-111	100.0
WP_054314418.1\|1683375_1684221_-	peptidase M15	A0A059T7Y8	Listeria_phage	3.8e-136	92.2
WP_014929558.1\|1684220_1684502_-\|holin	phage holin	A8ATW3	Listeria_phage	6.7e-45	98.9
WP_003733957.1\|1684501_1684807_-	hypothetical protein	A0A059T5E6	Listeria_phage	1.8e-43	100.0
WP_058877366.1\|1684858_1687021_-	hypothetical protein	A8ATW1	Listeria_phage	0.0e+00	98.5
WP_026747248.1\|1687033_1688602_-	hypothetical protein	A8ATW0	Listeria_phage	5.8e-303	99.0
WP_054314419.1\|1688598_1693398_-\|tail	phage tail tape measure protein	A8ATV9	Listeria_phage	0.0e+00	89.2
WP_077914498.1\|1693402_1693714_-	hypothetical protein	A0A0B5D116	Listeria_phage	4.5e-42	97.8
WP_026750198.1\|1693710_1694142_-	hypothetical protein	A8ATV7	Listeria_phage	4.7e-74	99.3
WP_012951935.1\|1694197_1694884_-	Ig domain-containing protein	A0A0B5CYK8	Listeria_phage	2.6e-114	97.4
WP_003725064.1\|1694888_1695260_-	hypothetical protein	A8ATV5	Listeria_phage	8.5e-64	100.0
WP_012951936.1\|1695256_1695574_-	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	2.4e-51	98.1
WP_026750199.1\|1695563_1695929_-	hypothetical protein	A8ATV3	Listeria_phage	2.1e-62	95.0
WP_003723785.1\|1695928_1696282_-	hypothetical protein	A8ATV2	Listeria_phage	8.4e-61	99.1
WP_026750200.1\|1696469_1697342_-	hypothetical protein	A8ATV0	Listeria_phage	7.9e-161	99.0
WP_003744996.1\|1697364_1697919_-	hypothetical protein	A8ATU9	Listeria_phage	1.1e-88	99.5
WP_003753503.1\|1698014_1699058_-	hypothetical protein	A0A0B5D111	Listeria_phage	5.1e-199	98.8
WP_026750201.1\|1699062_1700619_-	hypothetical protein	A8ATU7	Listeria_phage	2.9e-299	98.8
WP_054314420.1\|1700633_1701953_-\|terminase	PBSX family phage terminase large subunit	A0A0B5CYJ6	Listeria_phage	6.2e-234	88.7
WP_026750203.1\|1701891_1702677_-	hypothetical protein	A8ATU5	Listeria_phage	5.0e-130	97.1
WP_012951944.1\|1702716_1702944_-	hypothetical protein	A8AU06	Listeria_phage	1.5e-34	100.0
WP_015987428.1\|1703024_1703657_-	hypothetical protein	A8AU05	Listeria_phage	1.1e-114	100.0
WP_026750204.1\|1703838_1704273_-	hypothetical protein	A8ASQ1	Listeria_phage	5.3e-73	97.2
WP_026750205.1\|1704413_1704797_-	DUF2481 family protein	A0A0B5CU14	Listeria_phage	4.4e-63	96.9
WP_026750206.1\|1704800_1705205_-	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	1.5e-61	89.6
WP_031669838.1\|1705149_1705332_-	hypothetical protein	A8ASP6	Listeria_phage	3.2e-16	77.8
WP_026750207.1\|1705350_1705833_-	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	1.0e-80	98.1
WP_026750208.1\|1705829_1706231_-	hypothetical protein	A8ATZ6	Listeria_phage	4.9e-49	76.7
WP_026750209.1\|1706227_1706587_-	hypothetical protein	A0A059T801	Listeria_phage	3.8e-45	92.0
WP_026750210.1\|1706608_1706869_-	DUF3850 domain-containing protein	A0A059T699	Listeria_phage	1.1e-25	77.0
WP_026750211.1\|1706861_1707197_-	hypothetical protein	A8ATZ5	Listeria_phage	4.6e-08	93.1
WP_049948461.1\|1707177_1707414_-	hypothetical protein	A0A059T6G5	Listeria_phage	3.1e-27	89.9
WP_026750212.1\|1707413_1707602_-	hypothetical protein	NA	NA	NA	NA
WP_026750213.1\|1707598_1708156_-	DUF1642 domain-containing protein	Q8W5X2	Listeria_phage	3.1e-41	49.8
WP_026750214.1\|1708152_1708530_-	hypothetical protein	NA	NA	NA	NA
WP_026750215.1\|1708526_1709510_-	DNA cytosine methyltransferase	H7BVD3	unidentified_phage	1.2e-48	38.1
WP_026750216.1\|1709509_1709974_-	class I SAM-dependent methyltransferase	A8ATY8	Listeria_phage	9.6e-89	100.0
WP_026750217.1\|1709970_1710945_-	DnaD domain protein	A8ASN4	Listeria_phage	4.1e-166	92.9
WP_026750218.1\|1710961_1711621_-	ERF family protein	A8ASN3	Listeria_phage	5.0e-91	91.3
WP_012951957.1\|1711626_1712103_-	siphovirus Gp157 family protein	A0A059T5F1	Listeria_phage	9.5e-76	100.0
WP_003734953.1\|1712099_1712294_-	hypothetical protein	A0A059T6E8	Listeria_phage	1.6e-29	100.0
WP_157862701.1\|1712389_1712530_-	hypothetical protein	A0A059T7Q6	Listeria_phage	9.4e-16	97.6
WP_003722564.1\|1712599_1712788_-	hypothetical protein	Q9T175	Listeria_phage	1.8e-22	82.3
WP_023548459.1\|1712896_1713112_-	hypothetical protein	Q9T176	Listeria_phage	9.7e-28	93.0
WP_012951959.1\|1713108_1713642_-	hypothetical protein	A0A059T5F0	Listeria_phage	1.5e-77	87.9
WP_026750219.1\|1713767_1714547_-	antirepressor	A0A0B5CTU1	Listeria_phage	6.9e-140	97.7
WP_003733685.1\|1714528_1714804_-	hypothetical protein	NA	NA	NA	NA
WP_026750220.1\|1715088_1715325_-	hypothetical protein	A0A059T5E9	Listeria_phage	9.6e-37	98.7
WP_026750221.1\|1715389_1715749_+	DUF2513 domain-containing protein	A0A2H4J4K9	uncultured_Caudovirales_phage	4.6e-06	26.3
WP_003733687.1\|1715707_1715902_-	hypothetical protein	A0A059T6E5	Listeria_phage	1.4e-25	95.3
WP_026750222.1\|1715966_1716233_+	hypothetical protein	NA	NA	NA	NA
WP_023548448.1\|1716255_1716429_-	hypothetical protein	NA	NA	NA	NA
WP_003731220.1\|1716432_1716684_-	helix-turn-helix transcriptional regulator	A8ATX6	Listeria_phage	7.6e-40	100.0
WP_026750223.1\|1716832_1717141_+	helix-turn-helix transcriptional regulator	A8ATX5	Listeria_phage	2.7e-47	99.0
WP_012951966.1\|1717171_1717663_+	hypothetical protein	A8ATX4	Listeria_phage	2.9e-91	99.4
WP_003727739.1\|1717685_1717904_+	zinc-ribbon domain-containing protein	A0A059T6E3	Listeria_phage	5.4e-34	100.0
WP_023548440.1\|1717918_1718524_+	hypothetical protein	NA	NA	NA	NA
WP_047934404.1\|1718587_1719946_+	recombinase family protein	Q8LTD8	Listeria_phage	1.7e-255	98.7
WP_054314421.1\|1719936_1720413_+	competence protein ComK	NA	NA	NA	NA
WP_003739618.1\|1720467_1720815_-	helix-turn-helix transcriptional regulator	A0A0A7RTK4	Clostridium_phage	9.9e-06	40.7

DBSCAN-SWA_5

1864103 : 1871947

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722604.1\|1864103_1865075_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_054314442.1\|1865082_1866051_-	YvcK family protein	A1IMD5	Streptococcus_phage	6.7e-68	43.3
WP_003722606.1\|1866052_1866928_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_031645160.1\|1867035_1868766_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	3.3e-174	53.3
WP_003734087.1\|1868807_1869869_-	galactose mutarotase	NA	NA	NA	NA
WP_054314441.1\|1869885_1870869_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	7.6e-51	36.9
WP_003722610.1\|1870987_1871947_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

DBSCAN-SWA_6

2382613 : 2389138

Listeria_phage(33.33%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721739.1\|2382613_2383066_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
WP_003721740.1\|2383071_2383407_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_003732219.1\|2383623_2384052_+	hypothetical protein	NA	NA	NA	NA
WP_003732220.1\|2384063_2384480_+	hypothetical protein	A8ASQ1	Listeria_phage	1.3e-20	39.3
WP_003732221.1\|2384757_2385147_+	DUF5072 domain-containing protein	NA	NA	NA	NA
WP_003721744.1\|2385159_2385672_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003721745.1\|2385719_2386022_+	hypothetical protein	NA	NA	NA	NA
WP_077944101.1\|2386063_2386468_+	phenylalanine racemase	NA	NA	NA	NA
WP_054314464.1\|2386454_2388323_+	hypothetical protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
WP_009911828.1\|2388319_2389138_+\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	7.2e-39	35.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013723

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection