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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013737 Herbaspirillum rubrisubalbicans M1, complete genome 1 crisprs cas3,DinG,DEDDh,csa3 0 2 3 0

Results visualization

1. NZ_CP013737
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013737_1 3501279-3501408 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP013737_1 1.1|3501306|27|NZ_CP013737|PILER-CR 3501306-3501332 27 NZ_CP032323 Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence 480916-480942 3 0.889
NZ_CP013737_1 1.1|3501306|27|NZ_CP013737|PILER-CR 3501306-3501332 27 NZ_CP022369 Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence 207571-207597 4 0.852
NZ_CP013737_1 1.1|3501306|27|NZ_CP013737|PILER-CR 3501306-3501332 27 NZ_CP007795 Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence 615909-615935 4 0.852
NZ_CP013737_1 1.1|3501306|27|NZ_CP013737|PILER-CR 3501306-3501332 27 NZ_CP054618 Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence 230221-230247 5 0.815
NZ_CP013737_1 1.1|3501306|27|NZ_CP013737|PILER-CR 3501306-3501332 27 NZ_CP030264 Ensifer adhaerens strain Corn53 plasmid AB, complete sequence 391072-391098 6 0.778
NZ_CP013737_1 1.2|3501360|30|NZ_CP013737|PILER-CR 3501360-3501389 30 NZ_CP033227 Sphingobium yanoikuyae strain SJTF8 plasmid pF1, complete sequence 397869-397898 7 0.767
NZ_CP013737_1 1.2|3501360|30|NZ_CP013737|PILER-CR 3501360-3501389 30 NC_007336 Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence 539437-539466 7 0.767
NZ_CP013737_1 1.2|3501360|30|NZ_CP013737|PILER-CR 3501360-3501389 30 NZ_CP007257 Rhodococcus erythropolis R138 plasmid pLRE138, complete sequence 430548-430577 8 0.733
NZ_CP013737_1 1.2|3501360|30|NZ_CP013737|PILER-CR 3501360-3501389 30 NZ_CP014597 Yangia sp. CCB-MM3 plasmid unnamed1, complete sequence 302461-302490 8 0.733

1. spacer 1.1|3501306|27|NZ_CP013737|PILER-CR matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 3, identity: 0.889

gcgctccttgtcttcgatggcggtgtg	CRISPR spacer
gcgctcctcgtcgtcgatggcggtgtc	Protospacer
********.*** ************* 

2. spacer 1.1|3501306|27|NZ_CP013737|PILER-CR matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 4, identity: 0.852

gcgctccttgtcttcgatggcggtgtg	CRISPR spacer
ccgctcctcgtcgtcgatggcggtgtc	Protospacer
 *******.*** ************* 

3. spacer 1.1|3501306|27|NZ_CP013737|PILER-CR matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 4, identity: 0.852

gcgctccttgtcttcgatggcggtgtg	CRISPR spacer
ccgctcctcgtcgtcgatggcggtgtc	Protospacer
 *******.*** ************* 

4. spacer 1.1|3501306|27|NZ_CP013737|PILER-CR matches to NZ_CP054618 (Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.815

gcgctccttgtcttcgatggcggtgtg	CRISPR spacer
ccgctcctcgtcgtcgatggcggtctc	Protospacer
 *******.*** *********** * 

5. spacer 1.1|3501306|27|NZ_CP013737|PILER-CR matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 6, identity: 0.778

gcgctccttgtcttcgatggcggtgtg	CRISPR spacer
ctcgtcgttgtcttcgatggcgttgtg	Protospacer
 .  ** *************** ****

6. spacer 1.2|3501360|30|NZ_CP013737|PILER-CR matches to NZ_CP033227 (Sphingobium yanoikuyae strain SJTF8 plasmid pF1, complete sequence) position: , mismatch: 7, identity: 0.767

ggtgcgttcgcgctcttcctgggtcacgaa	CRISPR spacer
gatccccgcgcgctcttcctgcgtcacgac	Protospacer
*.* * . ************* ******* 

7. spacer 1.2|3501360|30|NZ_CP013737|PILER-CR matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.767

ggtgcgttcgcgctcttcctgggtcacgaa	CRISPR spacer
cgcgatctcgcgctcttcgtcggtcacgaa	Protospacer
 *.*  .*********** * *********

8. spacer 1.2|3501360|30|NZ_CP013737|PILER-CR matches to NZ_CP007257 (Rhodococcus erythropolis R138 plasmid pLRE138, complete sequence) position: , mismatch: 8, identity: 0.733

ggtgcgttcgcgctcttcctgggtcacgaa	CRISPR spacer
gaacgcttcgcgctcttcctgtgtcaggat	Protospacer
*.    *************** **** ** 

9. spacer 1.2|3501360|30|NZ_CP013737|PILER-CR matches to NZ_CP014597 (Yangia sp. CCB-MM3 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ggtgcgttcgcgctcttcctgggtcacgaa	CRISPR spacer
gatgcgttcgagctcttcctcggtccattg	Protospacer
*.******** ********* ****    .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1591356 : 1676517 80 Burkholderia_phage(28.21%) transposase,plate,portal,integrase,head,capsid,tRNA,tail,terminase attL 1641297:1641356|attR 1680042:1680119
DBSCAN-SWA_2 2662814 : 2703383 42 Burkholderia_virus(40.0%) plate,protease,transposase NA
DBSCAN-SWA_3 3465172 : 3476905 9 Bacillus_phage(25.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage