CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010995	Campylobacter iguaniorum strain 2463D, complete genome	3 crisprs	cas7,cas5,cas3,cas4,cas2,cas1,DEDDh,WYL,cas14j,csa3	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010995_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010995_1

647974-648467

Orphan

Consensus_repeat	Method
GTATAAATTTATCCTTGTAGGATTTAAAAC	CRISPRCasFinder
GTATAAATTTATCCTTGTAGGATTTAAAAC	CRT

7 spacers

The CRISPR arrays of NZ_CP010995_1

>merge|NZ_CP010995|1|647974-648467|CRISPRCasFinder,CRT
GTATAAATTTATCCTTGTAGGATTTAAAACCTTTGATTGTATAAGTACCTACAGCCCCACTGGATGTATAAATTTATCCTTGTAGGATTTAAAACATTCAAGTTTATACGGAAGTCACACAGATACAATTGAGTATAAATTTATCCTTGTAGGATTTAAAACTAGTTCTGCTACTGCTGATTATAAAACTGTAAAATATGTATAAATTTATCCTTGTAGGATTTAAAACGTAAAAAATCAGAATATTAAATAATATTTTTCGCAAATGTATAAATTTATCCTTGTAGGATTTAAAACGCTTTTCTCTCATCTTTTTTGGCTGGATCTAGTAAAGGTATAAATTTATCCTTGTAGGATTTAAAACATGATTATCACTGTAGAGCTAAGACCAATTATATGTATAAATTTATCCTTGTAGGATTTGAAACCAACAAAATGCTAAGCAAAGAAAAGCGTAAAGGACGGTATAAATTTATCCTTATGAGGCTTTAAAT

>NZ_CP010995|1|1|647974-648467|CRISPRCasFinder
GTATAAATTTATCCTTGTAGGATTTAAAAC	CTTTGATTGTATAAGTACCTACAGCCCCACTGGAT
GTATAAATTTATCCTTGTAGGATTTAAAAC	ATTCAAGTTTATACGGAAGTCACACAGATACAATTGA
GTATAAATTTATCCTTGTAGGATTTAAAAC	TAGTTCTGCTACTGCTGATTATAAAACTGTAAAATAT
GTATAAATTTATCCTTGTAGGATTTAAAAC	GTAAAAAATCAGAATATTAAATAATATTTTTCGCAAAT
GTATAAATTTATCCTTGTAGGATTTAAAAC	GCTTTTCTCTCATCTTTTTTGGCTGGATCTAGTAAAG
GTATAAATTTATCCTTGTAGGATTTAAAAC	ATGATTATCACTGTAGAGCTAAGACCAATTATAT
GTATAAATTTATCCTTGTAGGATTTGAAAC	CAACAAAATGCTAAGCAAAGAAAAGCGTAAAGGACG
GTATAAATTTATCCTTATGAGGCTTTAAAT

>NZ_CP010995|1|1|647974-648467|CRT
GTATAAATTTATCCTTGTAGGATTTAAAAC	CTTTGATTGTATAAGTACCTACAGCCCCACTGGAT
GTATAAATTTATCCTTGTAGGATTTAAAAC	ATTCAAGTTTATACGGAAGTCACACAGATACAATTGA
GTATAAATTTATCCTTGTAGGATTTAAAAC	TAGTTCTGCTACTGCTGATTATAAAACTGTAAAATAT
GTATAAATTTATCCTTGTAGGATTTAAAAC	GTAAAAAATCAGAATATTAAATAATATTTTTCGCAAAT
GTATAAATTTATCCTTGTAGGATTTAAAAC	GCTTTTCTCTCATCTTTTTTGGCTGGATCTAGTAAAG
GTATAAATTTATCCTTGTAGGATTTAAAAC	ATGATTATCACTGTAGAGCTAAGACCAATTATAT
GTATAAATTTATCCTTGTAGGATTTGAAAC	CAACAAAATGCTAAGCAAAGAAAAGCGTAAAGGACG
GTATAAATTTATCCTTATGAGGCTTTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010995.1\|WP_051870984.1\|630152_630875_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP010995.1\|WP_038453664.1\|631999_632959_-\|polysulfide-reductase	unknown	unknown	gnl\|CDD\|274450
NZ_CP010995.1\|WP_058893053.1\|632951_633518_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319873
NZ_CP010995.1\|WP_038453671.1\|637204_637450_+\|sulfurtransferase-like-selenium-metabolism-protein-YedF	unknown	unknown	gnl\|CDD\|236822
NZ_CP010995.1\|WP_058893062.1\|660477_661230_+\|flagellin	unknown	unknown	gnl\|CDD\|139237
NZ_CP010995.1\|WP_058893055.1\|637446_638208_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|223867
NZ_CP010995.1\|WP_058893059.1\|657256_658261_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|225439
NZ_CP010995.1\|WP_144242190.1\|653264_653885_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NZ_CP010995.1\|WP_058893052.1\|631287_631947_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP010995.1\|WP_038453676.1\|651970_653275_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|235656
NZ_CP010995.1\|WP_058893056.1\|638222_640025_-\|menaquinone-biosynthesis-decarboxylase	unknown	unknown	gnl\|CDD\|163413
NZ_CP010995.1\|WP_058893750.1\|647345_647729_+\|helix-hairpin-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378965
NZ_CP010995.1\|WP_038453681.1\|653991_654801_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|234605
NZ_CP010995.1\|WP_058893054.1\|635987_637205_+\|selenium-metabolism-membrane-protein-YedE/FdhT	unknown	unknown	gnl\|CDD\|236845
NZ_CP010995.1\|WP_058893061.1\|659132_660419_+\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|234853
NZ_CP010995.1\|WP_058893060.1\|658253_659114_+\|pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|225313
NZ_CP010995.1\|WP_038453668.1\|633527_635804_-\|thiosulfate-reductase-PhsA	unknown	unknown	gnl\|CDD\|237973
NZ_CP010995.1\|WP_058893057.1\|648607_651448_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|273608
NZ_CP010995.1\|WP_058893058.1\|655956_657270_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376576
NZ_CP010995.1\|WP_038453682.1\|654810_655875_+\|class-II-fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|236406

Protein	Function_ID	Function_description	E-value
NZ_CP010995.1\|WP_051870984.1\|630152_630875_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.81043e-33
NZ_CP010995.1\|WP_038453664.1\|631999_632959_-\|polysulfide-reductase	gnl\|CDD\|274450	TIGR03148, cyt_nit_nrfD, cytochrome c nitrite reductase, NrfD subunit. Members of this protein family are NrfD, a highly hydrophobic protein encoded in the nrf operon, which encodes cytochrome c nitrite reductase. This multiple heme-containing enzyme can reduce nitrite to ammonia. Members belong to a broader Pfam protein family, pfam03916, which also contains an NrfD-related subunit of polysulphide reductase. [Energy metabolism, Electron transport].	6.6103e-69
NZ_CP010995.1\|WP_058893053.1\|632951_633518_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319873	cd10551, PsrB, polysulfide reductase beta (PsrB) subunit. This family includes the beta subunit of bacterial polysulfide reductase (PsrABC), an integral membrane-bound enzyme responsible for quinone-coupled reduction of polysulfides, a process important in extreme environments such as deep-sea vents and hot springs. Polysulfide reductase contains three subunits: a catalytic subunit PsrA, an electron transfer PsrB subunit and the hydrophobic transmembrane PsrC subunit. PsrB belongs to the DMSO reductase superfamily that contains [4Fe-4S] clusters which transfer the electrons from the A subunit to the hydrophobic integral membrane C subunit via the B subunit. In Shewanella oneidensis, which has highly diverse anaerobic respiratory pathways, PsrABC is responsible for H2S generation as well as its regulation via respiration of sulfur species. PsrB transfers electrons from PsrC (serving as quinol oxidase) to the catalytic subunit PsrA for reduction of corresponding electron acceptors. It has been shown that T. thermophilus polysulfide reductase could be a key energy-conserving enzyme of the respiratory chain, using polysulfide as the terminal electron acceptor and pumping protons across the membrane.	2.30131e-76
NZ_CP010995.1\|WP_038453671.1\|637204_637450_+\|sulfurtransferase-like-selenium-metabolism-protein-YedF	gnl\|CDD\|236822	PRK11018, PRK11018, putative sulfurtransferase YedF.	2.87396e-43
NZ_CP010995.1\|WP_058893062.1\|660477_661230_+\|flagellin	gnl\|CDD\|139237	PRK12802, PRK12802, flagellin; Provisional.	6.69763e-10
NZ_CP010995.1\|WP_058893055.1\|637446_638208_-\|glutamate-racemase	gnl\|CDD\|223867	COG0796, MurI, Glutamate racemase [Cell envelope biogenesis, outer membrane].	7.93028e-78
NZ_CP010995.1\|WP_058893059.1\|657256_658261_+\|OmpA-family-protein	gnl\|CDD\|225439	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane].	1.30887e-17
NZ_CP010995.1\|WP_144242190.1\|653264_653885_-\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	4.83376e-85
NZ_CP010995.1\|WP_058893052.1\|631287_631947_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.97859e-41
NZ_CP010995.1\|WP_038453676.1\|651970_653275_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|235656	PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional.	0
NZ_CP010995.1\|WP_058893056.1\|638222_640025_-\|menaquinone-biosynthesis-decarboxylase	gnl\|CDD\|163413	TIGR03701, mena_SCO4490, menaquinone biosynthesis decarboxylase, SCO4490 family. Members of this protein family are putative decarboxylases involved in a late stage of the alternative pathway for menaquinone, via futalosine, as in Streptomyces coelicolor and Helicobacter pylori. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	0
NZ_CP010995.1\|WP_058893750.1\|647345_647729_+\|helix-hairpin-helix-domain-containing-protein	gnl\|CDD\|378965	pfam12836, HHH_3, Helix-hairpin-helix motif. The HhH domain is a short DNA-binding domain.	1.92876e-19
NZ_CP010995.1\|WP_038453681.1\|653991_654801_+\|peptidylprolyl-isomerase	gnl\|CDD\|234605	PRK00059, prsA, peptidylprolyl isomerase; Provisional.	7.30609e-24
NZ_CP010995.1\|WP_058893054.1\|635987_637205_+\|selenium-metabolism-membrane-protein-YedE/FdhT	gnl\|CDD\|236845	PRK11099, PRK11099, putative inner membrane protein; Provisional.	3.79583e-156
NZ_CP010995.1\|WP_058893061.1\|659132_660419_+\|histidinol-dehydrogenase	gnl\|CDD\|234853	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed.	0
NZ_CP010995.1\|WP_058893060.1\|658253_659114_+\|pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|225313	COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism].	4.14819e-48
NZ_CP010995.1\|WP_038453668.1\|633527_635804_-\|thiosulfate-reductase-PhsA	gnl\|CDD\|237973	PRK15488, PRK15488, thiosulfate reductase PhsA; Provisional.	0
NZ_CP010995.1\|WP_058893057.1\|648607_651448_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	5.14222e-34
NZ_CP010995.1\|WP_058893058.1\|655956_657270_+\|hypothetical-protein	gnl\|CDD\|376576	pfam01618, MotA_ExbB, MotA/TolQ/ExbB proton channel family. This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.	0.00174969
NZ_CP010995.1\|WP_038453682.1\|654810_655875_+\|class-II-fructose-bisphosphate-aldolase	gnl\|CDD\|236406	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional.	0

>NZ_CP010995.1|WP_058893750.1|647345_647729_+|helix-hairpin-helix-domain-containing-protein
MALLSSLVYGAVNLNTASKEELMALPGIGESRAEAIIDYRNKNKFNSIEDIKNVKGIGDKRYEAIKADLSINGDNDISNLKSKGNSSKKVKEKKDKINSDIKKDRTGKEKKDKVSKSKVSKDKGEGK
>NZ_CP010995.1|WP_058893056.1|638222_640025_-|menaquinone-biosynthesis-decarboxylase
MQKYIDILNKNGLLKIIDTPCDIDLEIAHLSYIEVKKDNSKALLFTHPTDKNGKKFGPVLTNTFGSFEALNLILGKDSNEIAKEIQSLLKPKKPTTIKEKLDFFSKLFSLKSALPQRLSSRGQCQEIAQNELNLYDLPILKTWEEDGGAFITMGQVYTKDLNSNTQNLGMYRLQVHSKNELGMHWQIHKDAAHFFHEYKKAGVKMPVTVAIGGDPLYIWCGQAPLPKNIFELMLYGFIRKTPAKLVKSLTNDIFIPHDVDYVIEGFVDTNRLKDEGKFGDHTGFYTPVEPFPVMEVTKITHKKNPIFHATVVGKPPLEDKYMGYATERIFMPLLQTTVPELIDYKMPENGVFHNLILAKFKECYPAQATQMMHAFWGVGQMSFVKHAIFVPETAPNLDDYANLTRYILNKFSPKSMLISSGVCDQLDHASPNSCFGGKLGIDASIDFEPETVNLLSDDKLLAKFKSINKNMLEVKQHFTDTKNPICFVKFDKDKLVKSVFDELCKFKEHFKILIFIDNDVRLNNLYMLVWRVTNNIDALRDIFINDEQICVDATRKHEWEGYTRGWPKETNCTRQVVEKLINKGLLERDEQLFEKFEIFG
>NZ_CP010995.1|WP_058893055.1|637446_638208_-|glutamate-racemase
MKIAVFDSGIGGLSLLNEALKAFCGVDFIYFADNLNAPYGTKSKDEITKLTINAAQFLVEQNVDMIVIACNTATSAAICELRASFSLPIVGMEPAIKLGANSSGDILVVATPATIKGNKLSDLIHRVNLETKTRLLGMPKLVEFAQNMDFDSIEVKKYIKDELSKFDIDKTELLVLGCTHFNYFKDSFRELLPAHVSIIDGINGTIKEMMRKLGNISKFGEKNKLSYFSSYEEMDTKLIEPYLKRLDEMSKIS
>NZ_CP010995.1|WP_038453671.1|637204_637450_+|sulfurtransferase-like-selenium-metabolism-protein-YedF
MANLENVEITYTLDIQGEACPMPAVATLEVLPKMKKGEVLEVLCDCPQAINSIPVDAKNRGFEVLAVEQDGPTLRFVIRKP
>NZ_CP010995.1|WP_058893054.1|635987_637205_+|selenium-metabolism-membrane-protein-YedE/FdhT
MNSVLNQFKQKYLVYFWDTAKAMVALAIIASIYFGFFGTGWQVTGEMTRWGGEFLELFGLDTSKYSYYQMTNLSGNPLTRYEGMVLIGMFLGATIAALWANKVKFRLPASHIRIAQAIIGGLLSGFGARLAFGCNLLDFFTGLPYFSLHTWEFAIFMVLGIWTATKVGKLRIFMPKVTLEKCGVHGKGIEHDKARAKRHFRYGIAILVVTIAWLVYLFATTEPFALKNKASFVPLGLMFGLAFGFIISRGQVCFTSCFRDLFLFGRDNAAKGAFYGMIIATFIVFVLMLNGYTAFVRSFSVAVALGAFLFGFGIVFAGGCECGWTYRAAEGQMHFMIVGVANFAGTAVLALIYDEIPAWLKAGAKIQFLNEFGALPGLALNVGLLLLSIALIFAYKKRFFAKGGY
>NZ_CP010995.1|WP_038453668.1|633527_635804_-|thiosulfate-reductase-PhsA
MAISRRSFLKTSTAIGTLAAFELNLGAKSSLINQSSKLVPSVCEMCSTRCPIEAQVIDGKCNFIQGNPKFNANKTSVCARGGAGLNQLYDPKRIVTPLIRVGQRGENKWREASWKEALELCAKKLDEIKQKYGPQSVVFTSKSGESHTQMTNFACAYGSPNIFSHWSCCPITYNMVLSHTYGSGLSRDYANAKYIVNFGHNLFEGLVISDTKKLAKFASKEDAKLLVLDPRFSGVAAKADEWLPVKPGTDLAFLMALIHVWIRDEKYDKKFIEEYTIGIDEVIKSVKETSPKWQENITGIKAKDVERIADEIWAKAPQVIIDWGHKTTTTKAEYQRTRAIAIANALMGNLEKRGGIFFGKDAKTFNKLCGEELFPTLANPDAAFKIPKTQRIDGCGEEGHKHFFISRKHGVLMDIAPAILSQKPYPIKGWVNTRFNHLINVAGTKDTIKAIKELDFVVSIDVYLNDFSNLADVVLPEATYLERDESIQNKSGTAPGYYMRNKAIEPIAGTKSGYEIFRELARLMKIDQNYTWNTINEYRMIQAKGNDKLVADLIKDGYVNWKVPQVYYREKSYVSKFVEKYSNAAQFVDENGQMSSQIKFKTPSGKIELFLASIEEKLPGEGSLNTNNMDVYGGHEFCLMTGKTAIHTNGHTQSLPILNNLMSFSPLWINTKAAKQKNLKDGDKVILKNEFGEVEATLMLTEGIREDTLFLYHGFGHITPDLTRSNMIGTNQSVILNPADGVVCGTMVTNVGVDIIKA
>NZ_CP010995.1|WP_058893053.1|632951_633518_-|4Fe-4S-dicluster-domain-containing-protein
MKKFVMIHDENLCIGCQACSVACRNENKVPDDVYRLQVHIKMSGTFPHLKSDYTRHSCVMCEDSPCVSVCPTGASFKTENGITLIDDRLCVSCKYCILACPYDARFVDPITKAIGKCTFCYENRLLEGKEPACVSVCPTDALVFGDALDQNSEVSKLIAKKSIEYPKAYLNTKPRLGFIKNTKGGRYE
>NZ_CP010995.1|WP_038453664.1|631999_632959_-|polysulfide-reductase
MNNMWGSTAQFDAIYWPWPIAIYLFLAGLSAGSIMVALLVKWNKHEDNANSIWDAMVKAGAIIGPVTICLGLLLLIIDLGKPLSFYWLLITYNITSVMSIGVIFLLAYTPFAFLFAMMIFEKEIEQYKIFAVLRPLTKFIRSFAKISKNIEYILFVLAICVAMYTGFLLGAIEKIPLWNTPILPILFLVSGFSSGIAANILIGMLFFKGSLNKDSIKYLLVLDLRAILFEIPLLIILFLGLYLGGAKEFANLALSDTFYGTVFWIGVVFVGLFLPVLIAATALKNHAYKPLYIVINSLVVLVGVIILRYYVVYGGQALI
>NZ_CP010995.1|WP_058893052.1|631287_631947_-|response-regulator-transcription-factor
MKILLLEDDYEYQISVKEYLENLGYEIDEASDGIEACDKIAKNSYHLLILDIKVPEISGHEVMKYAKNLNLQTPIMVMTSLTNIEDISTGYELGCNEYLKKPFNLAELKFRVNELMRKYYSKDDKNIIKIAKNFDYDTNLKQIKNGQNIVNLSQKEINLIEFLLSRVGMFSSIDDIKYEIWEDKEIDDAGIRMHIKNIRNKTSDDFIISHRGMGYKINV
>NZ_CP010995.1|WP_051870984.1|630152_630875_-|HAMP-domain-containing-histidine-kinase
MSVYFVYHSTLKIHEKQKKIMDSFFNDAMHELKTPLGVATINLEMLELKNKNTHRIKSALKQMKITYEDVEFFIKHSYENFPKKVINFSEFLEQRVRFLTTIARSKNIEIKYLITPNLKVFMSEIELTRLIDNNISNAIKYSKSANKIEIYLDKIDNQAVFTVKDYGKGIKDTKIIWQRYAREDLSQGGFGLGLNIVLNICNKYNIKYNVESIPTKGSKFTYKISLFKEKLIDSLVKNSL
>NZ_CP010995.1|WP_058893057.1|648607_651448_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MRSKMNLQYTKIMFSIPCVLLMSCSNINATGFLTQNVYNDDVDFTFNNADLIQTYATETYQFNKNLSVTTTGGQQVVYAMEGSDLTFNIAQDKTFSINGYKNGNILRSSSNNSANPATFNINGGHLFIDQTSFNKDIGGLYTDNNGYININNQSITINNVGNAIELKDQSKFNITTGNIEITNAYRGIAMQSNVGGYTAPNILNLNSANNISIEAMQTNGAGIYALAYTGLVPPNVITLKANNDIKIDSAAQGIASFGKNEISLEAKNIDIDGGTRAIYSRGYENLDSLVTLKANNSINLTSNDTGVYSYRNSTVNLNASDITINATKYAIYSNAIADTATSLVNLNANSIKLGSSDNYVVYSANDGSVVSLNAKDVNINAVWSLFADNSGKINITSDISNINITNDALRAYNSSDITINTNTNILNSGVNAIRTNTNGKVTINAPINQIKGDMYSAGGGEIRTAFSSNESKFTGSTDITTGGIIDLAFSNDATWYNTDDSTLSHLRLNKGIVDMSHTSGGQDLVVATDFSGSDGVFVLDISPDDINHGGTQTDFISIASALAPASAEIRISSSSIPSLSEYDFSGSNKAIWFGDVHNNVTFTSVQSKSMDDVYDYVFQTDINVRGGGSVNGNNWFLVGYGKRQNEAANSIINDSILRYLDISTLELDSLHKRLGEIQNYDEKDGIWARIIGAKGEYNDANINFNNKYNMIQAGYDKRYDNDYGDFFSGFALSYKDNDMDYKFGKGDSKNIGLALYESYFNEDKYYIDFILKYNHIRNKFEAFNDIGQTMQAKYNTNMANISLELGRKLQNEDRYFITPLGQINYGYIRGVDYTTSTGIKVEQDNINSLIGKLGLYAGKDFEQSSHYFKFGVLKEFIDEYGVYMQGKKESLHKTINIDDNWYEVGIGGDIWLNDDKSKTIYYSLEKTFGGRYETKWQATAGFRYLF
>NZ_CP010995.1|WP_038453676.1|651970_653275_+|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTNLELSRLDLEHIWHPCTQMSDHKNFPIIPIKSGKGAILSDFDGNSYIDCVSSWWVNLFGHSNDYINAKLSEQASNLEHVIMAGFSHEGIIKLSKRLVDLLPKPLNKCFYGDNGSSAIEIALKMSHHKNLIKGKNKPLFLNLKNSYHGETIAALSVGDVELYKKIYKNILIKTVQTSVPMSFKGNEVSDEEALNDLKITLEKYSDQISAFILEPLIQCAGDMNMYSGDFIKKACDLAKSYDIDIIFDEVAVGFGRTGSMFALEQCGVVPDFLCISKGITGGYLPLSVVVTSDETYELFYDTYESKKAFLHSHSYTGNALACACANATLDIFEQENVIEKNLHLSKFIKSEFSKLLKYDFIDNFRQTGMVLAFDLVGFKEPRTGYEIYKRALQKGLLLRPLANTIYFMPPYIITKEQVELVVRVLDELLGELRR
>NZ_CP010995.1|WP_144242190.1|653264_653885_-|endonuclease-III
MKDTKEIKELFLHNFNGARSELKFKNLYELIVCVMLSAQCTDKRVNLITPALFEAYPDVVSLANANLSSLKLFINSCSFFNNKAANLIKMAKSVVENFDGQIPLNEKDLTSLAGVGQKTAHVVLIEHNEANLMAVDTHVFRVSHRLGLSKAKTPEATEIDLTKAFKTELNTLHQAMVLFGRYTCKAVKPKCDECFLAKLCKSKTIS
>NZ_CP010995.1|WP_038453681.1|653991_654801_+|peptidylprolyl-isomerase
MKKGLALALSLAAAMSLNAAVLATVNGQNITDEDLAPALGSHMSELEKIPAEMKKNLLDRVIERQLMVEQAKKDGINQDPEYKKAIADITDNVAVNIWMKKQFEGLKVDEKKVKDLYEQNKDKYVVPAQAKAKHILVASEKEAKDIIKSLNGLKGDALDKKFSQIAKEKSIDKSSAQNGGELGWFGESQMVPSFGKASFELKKGEMTKQPVQSEFGYHIILKEDSKPQTALAYDKVKGKIETQLKTDEFRNVMQKKVDELKKAAKIEYK
>NZ_CP010995.1|WP_038453682.1|654810_655875_+|class-II-fructose-bisphosphate-aldolase
MGVLDVVKAGVLSGDDVTKLYAYAKKEGFALPAVNVVGSDSINAVLEAAKKANSPVIVQFSNGGAGFYAGKACPNADVLGAIAGAKHVHLLAKAYGIPVILHTDHAARKLLPWIDGLIEASKEHKKAFGKPLFSSHMLDLSEESLEENIETCKKYLKELSELGISLEIELGVTGGEEDGVDNSNVDNALLYTQPHEVAHAYEELGKISDKFSIAASFGNVHGVYKPGNVVLRPEILKNSQKFIKDKFGLSDEKPVNFVFHGGSGSELKDIKDAVSYGVIKMNIDTDTQWAFWNGVREYEAKNHDYLQGQIGNPEGNEKPNKKYYDPRKWLRSGEESMINRLLEAFENLNCMNRN
>NZ_CP010995.1|WP_058893058.1|655956_657270_+|hypothetical-protein
MEKNDTLDEFTLPEGNNRKSILVYFKIIFLPIFVYLIFLLGYLKIINFHVELHTILMMSFILFVALIFARHSAEFGCFVFEQRKDEFKKELKNFILKSLLYIGKERRSNGNFDEFVKKYSADVRNDNYALVGAGVFPMLGILGTFLSIAISMPSFNSTNAVALENEISMLLNGVGTAFYISIYGIFLALWWIFFERFGMNRFQKLINRQKNATSSFFWNKEEIEKRYMQETLGTFEKIGVIFDHVSKQEFFEELDRTVERKFKNFCDMLKVEEDAVKLSSEHVKYTMGTLLKASRDQKDIVKVHADILNVLHTFNSNLKELQLNVNEHYVRLHTASDDKISKLEKSVSEFGNNIAKFEGSLQNFSSEILDKQKLALDGFKSGMIDGMKAFREVFDDERAGQNDSLEIINELKKSIKEIDEEANLALEKLEAKPDETR
>NZ_CP010995.1|WP_058893059.1|657256_658261_+|OmpA-family-protein
MKLDNQKDENSNFWIAYADLMAGLLFVFILLVGAIVVKYVLTQSDLKLLKGDIEAQEQALKLNSIELSKRENAIKEFMQKLESEKNKNLALEEINSIFNEKLEELNLALQNAGDALDDVDRLNLELNTTLQNKDELIASLQESISKKDKDYGLLLSDLNSTKERIKSLSGIRLKVITTLKEKLGNSIKIDMDSGAISLPSSVLFDTNSFALKDSARFDLRRTLSTYFDILLSDEIRPNIDRITIEGHTDSVGNYLYNLELSQKRAYEVMKFIYSFYKNPELQKYLIASGRSFNDLIYKDGKEDNDASRRIEIKFSISNKAAMKEIEQILEQNNR
>NZ_CP010995.1|WP_058893060.1|658253_659114_+|pyridoxal-phosphate-dependent-enzyme
MDKFQLIKFRGRDFWILRDDLIGGEFNGNKARKLEYFLNADLKGIKRIISYGSNQSNAMYSISVFARLKNLEFIYFTDHISSFLKQNPNGNYAYALKNGMQIYEAKDRVNAAKMALKDGDILIKEGVAMSEAELGFQTQANLIEEFMAKTGTKFDVFLPSGTGTSAAYLAKNLKNTNVFTTPCVGDSAYLAKMIFELDKHSKVQILNPLKKYHFGDIKKELFDIYKELKDTTGVEFELLYDSVGWLSLLANLDKFTNQILYIHQGGMIGNQSLLERYERKFKFDML
>NZ_CP010995.1|WP_058893061.1|659132_660419_+|histidinol-dehydrogenase
MKILNSNDKNFNEEFDKLVNRSNLDMQNVMSIVTNIINDIKNRGDEALSEQIAKFDRWEVKDNLAISTDEMKKAYENISDELKNALQIACDRIKKYHEKQLEKTWLSFEENGSILGQKVTPVDRAGLYIPGGKAAYPSSLLMNAVPAIVAGVKDIVVCTPAVEGKVNELLLAAMHLLGIKEAYKVGGASAVAAMAYGTKTIKKVDVITGPGNIFVATAKKLVFGDVNIDMIAGPSEIGVIADDSANPRNIAIDLLSQAEHDELASSFLVTFNDQFANSVKDEIYAILPTLSREKIARASIDNKSAIIVAKDMNECVELMNALAVEHLEIATDNAFDYLPRIKHAGAIFLGHYTPEAIGDYLAGPNHTLPTGGSARFFSPLGVSNFMKKSSIISMNKQGIDELGEACMSLAKAEGLGAHGLSVKVRFDS
>NZ_CP010995.1|WP_058893062.1|660477_661230_+|flagellin
MQINSMSSNQTNVYLNSAQNNANKALENIAANRALSGTDSANMVIADSLQSQANGTMQGVNNANDAIGILQIADSTLQNLNSSADKLNQLSVRMNNAALGSNGRSALTSEANSIKTSMQDSLNSASFNGNNIFGGTLNFQTGSGQTSINLSSPNISSLDITNQKSISSFMDSVNSLRSDIGSTQNNLMSGINASLGFATSATASQSQLQNNDLASNVTNFNNANLQINSSTLMAAHNMQMLQSQMGKLLG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP010995_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010995_2

1086393-1086523

Orphan

Consensus_repeat	Method
TTCTATATTATTTCCTAGATCATCATAAATGATAAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010995_2

>merge|NZ_CP010995|2|1086393-1086523|CRISPRCasFinder
TTCTATATTATTTCCTAGATCATCATAAATGATAAAATCATCATTAAAACTAAAAAAATTTCTTTTGTTATCAACTATTTCTTTTTCAATATTTTCTATATTATTTCCTAGATCATCATAAATGATAAAAT

>NZ_CP010995|2|2|1086393-1086523|CRISPRCasFinder
TTCTATATTATTTCCTAGATCATCATAAATGATAAAAT	CATCATTAAAACTAAAAAAATTTCTTTTGTTATCAACTATTTCTTTTTCAATATT
TTCTATATTATTTCCTAGATCATCATAAATGATAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010995.1\|WP_058893312.1\|1079901_1080468_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010995.1\|WP_058893327.1\|1094294_1095239_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|274301
NZ_CP010995.1\|WP_058893322.1\|1089131_1090331_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377390
NZ_CP010995.1\|WP_058893321.1\|1088540_1089113_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379235
NZ_CP010995.1\|WP_058893326.1\|1093890_1094298_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010995.1\|WP_058893320.1\|1086585_1088544_-\|type-IA-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|223624
NZ_CP010995.1\|WP_058893316.1\|1081403_1082051_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|222854
NZ_CP010995.1\|WP_058893324.1\|1090721_1091555_-\|DUF1738-domain-containing-protein	unknown	unknown	unknown
NZ_CP010995.1\|WP_058893311.1\|1078661_1079459_+\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP010995.1\|WP_082663249.1\|1082212_1082416_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010995.1\|WP_058893310.1\|1077174_1078578_-\|anion-permease	unknown	unknown	gnl\|CDD\|279307
NZ_CP010995.1\|WP_058893323.1\|1090379_1090664_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010995.1\|WP_156412514.1\|1079484_1079640_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010995.1\|WP_058893315.1\|1081059_1081326_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010995.1\|WP_058893328.1\|1095240_1095462_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010995.1\|WP_058893329.1\|1095472_1096678_-\|TrbI/VirB10-family-protein	unknown	unknown	gnl\|CDD\|319755
NZ_CP010995.1\|WP_058893318.1\|1082485_1083484_-\|restriction-endonuclease-subunit-M	unknown	unknown	gnl\|CDD\|372662
NZ_CP010995.1\|WP_058893325.1\|1091978_1093898_-\|type-IV-secretion-system-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226036
NZ_CP010995.1\|WP_058893314.1\|1080807_1081038_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010995.1\|WP_058893313.1\|1080502_1080751_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348

Protein	Function_ID	Function_description	E-value
NZ_CP010995.1\|WP_058893327.1\|1094294_1095239_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|274301	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.	2.61249e-50
NZ_CP010995.1\|WP_058893329.1\|1095472_1096678_-\|TrbI/VirB10-family-protein	gnl\|CDD\|319755	cd16429, VirB10, VirB10 forms part of core complex in Type IV secretion system (T4SS). This family contains VirB10, a component of the type IV secretion system (T4SS), including homologs TrbI, TraF, TrwE and TraL. T4S system is employed by pathogenic bacteria to export virulence DNAs and/or proteins directly from the bacterial cytoplasm into the host cell. It forms a large multiprotein complex consisting of 12 proteins termed VirB1-11 and VirD4. VirB10, interacts with VirB7 and VirB9, forming the membrane-spanning 'core complex' (CC), around which all other components assemble. The CC is inserted in both, the outer and inner membranes, playing a fundamental role as a scaffold for the rest of the T4SS components and actively participating in T4S substrate transfer through the bacterial envelope via conformational changes regulating channel opening and closing. TrwE in R33 plasmid has been shown to be anchored to the inner membrane and its C-terminal is necessary for conjugation; the transmembrane domains of TrwB and TrwE are involved in TrwB-TrwE interactions. TraF protein of the RP4 plasmid is involved in circularization of pilin subunits of P-type pili. In gonococcal genetic island (GGI) of Neisseria gonorrhoeae, T4SS encodes TrbI and circularization occurs via a covalent intermediate between the C terminus of putative pilin protein TraA and TrbI.	2.47191e-60
NZ_CP010995.1\|WP_058893322.1\|1089131_1090331_-\|hypothetical-protein	gnl\|CDD\|377390	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein.	0.000281635
NZ_CP010995.1\|WP_058893310.1\|1077174_1078578_-\|anion-permease	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	1.3893e-143
NZ_CP010995.1\|WP_058893321.1\|1088540_1089113_-\|AAA-family-ATPase	gnl\|CDD\|379235	pfam13521, AAA_28, AAA domain.	4.42381e-10
NZ_CP010995.1\|WP_058893320.1\|1086585_1088544_-\|type-IA-DNA-topoisomerase	gnl\|CDD\|223624	COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair].	4.63586e-133
NZ_CP010995.1\|WP_058893316.1\|1081403_1082051_-\|AAA-family-ATPase	gnl\|CDD\|222854	PHA02518, PHA02518, ParA-like protein; Provisional.	2.62695e-36
NZ_CP010995.1\|WP_058893313.1\|1080502_1080751_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	8.89852e-06
NZ_CP010995.1\|WP_058893318.1\|1082485_1083484_-\|restriction-endonuclease-subunit-M	gnl\|CDD\|372662	pfam13651, EcoRI_methylase, Adenine-specific methyltransferase EcoRI. This methylase recognizes the double-stranded sequence GAATTC, causes specific methylation on A-3 on both strands, and protects the DNA from cleavage by the EcoRI endonuclease.	1.64655e-90
NZ_CP010995.1\|WP_058893325.1\|1091978_1093898_-\|type-IV-secretion-system-DNA-binding-domain-containing-protein	gnl\|CDD\|226036	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion].	7.58502e-63
NZ_CP010995.1\|WP_058893311.1\|1078661_1079459_+\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	3.00259e-16

>NZ_CP010995.1|WP_058893318.1|1082485_1083484_-|restriction-endonuclease-subunit-M
MNHKNQLNQETNWMSNKEKKPNIYFMKAKYEIDDEFYTSYHEIKKELDDYKSHFKGKIVVCPCNDGKKSNFYRYFSLNFKALELKKLITTTFDISDPSSKGTKIEITDCKMSETKLRGNGDFRSDEVRQIMASGDIIVTNPPFSLFRDLIEIVESEKKKFLIVGGTYSITYKKIFELYEKGKIWLGNNQVNIFTRPNGSKKRFSNISWFTNLKSIKHLEPIKLTKRYKNNEHKYPEYDNYKIIEVTSYKDIPIDYDGVMGVPLTFFLRHNPAQFKILGCDFEIREKYPELVKQDYTQINTKSAVLNGQELFTRIIIQRNGGLKPRARILNQI
>NZ_CP010995.1|WP_082663249.1|1082212_1082416_-|hypothetical-protein
MWAFLSINLLGIGTNAILYFLKMPNRIEAMLDADVFFITLAIMCYIIFNIMLYFIIKIHFIIEQRKE
>NZ_CP010995.1|WP_058893316.1|1081403_1082051_-|AAA-family-ATPase
MIISICNEKGGSGKSTLATNIAINQGIVKNEHLLLIDTDPQKSIATFLNIRNEENHPKAFDFAYKYGEELKEFLLTNKSKRDIVIDTGGRDSREMRIAIALSDIVIIPTIPSQFDVSVLDKMVNVIKMAKEQNTKLQAYIVINRASTNPFLAKKIESLKSFIHEIQEDYIKLANTIIYERERYKIATQLGLGVVEMKDGNKAEQEIKDLCKEILK
>NZ_CP010995.1|WP_058893315.1|1081059_1081326_-|hypothetical-protein
MNRELFIKSINDDLEKMRQESEPFFTELEATILLKLLDRYSEEQGGANTINLIDELVLLISDSKDLVGLSKESTFMYVVDFIRNKLNE
>NZ_CP010995.1|WP_058893314.1|1080807_1081038_-|hypothetical-protein
MKLDELQMHPAPVSDAIFLGKIKSNMYVEKIDFTEQFYECLAELCLKELNKRNTDSLTLTEQFESGLVIEIKAYTK
>NZ_CP010995.1|WP_058893313.1|1080502_1080751_-|DNA-cytosine-methyltransferase
MQILDLFSGIGGFSLGFESANFKDYDFLKLPAEQESVSDGFFKTTAFCEIDIKFKIYAIFIFYKIKYSDILIFNILFFIKIK
>NZ_CP010995.1|WP_058893312.1|1079901_1080468_-|hypothetical-protein
MKFKRTTNATDKLDEFIAGADSQKELPPKKGRTAVGTKFSKELGIKIRKKYPTYTLAKFIELALTTTIPHIKDEVLITIYDQAKWHNTSMSEFVRFKMGLSEAPQPKDPKEKEHQKNYIVFVSEAKKEKIRQIAESLEISILTYSDIKILATYELKDIFTFDELMQFKAEANNFDLDLDEYIAMRIRG
>NZ_CP010995.1|WP_156412514.1|1079484_1079640_+|hypothetical-protein
MIEESNKTIEQIAREGLHSLEVAIENFAPFCFWSLVIIGIVTALIWSATKN
>NZ_CP010995.1|WP_058893311.1|1078661_1079459_+|replication-initiation-protein
MGEISFYFEKGNFVLKATRVARAESNGTLVFRNKMNSILFPVNFTARDYDIFFTICWYAKQMGYSDSRNFIEMPYSKIAQFFSDSLNKTRFNNEIIDFCKKVLGENGSAVYKTLEITDNDEIMTAGVFFISIKAFRNTQILRFKLNTDALDILFGTLKFMKINLHDFVSIRGKFAKTLYRLLRQYENIKPDKDGFKCVNFNRSDFERFMSVPEKYETRDLDRRVINPSIDELNENYFKKLIFEKKIAEGSKKNVIGYSFKFILKD
>NZ_CP010995.1|WP_058893310.1|1077174_1078578_-|anion-permease
MKSKFIKGFIVVAIGVLVWFLPHPDAVTTQAWHLFAIVLATILGLILQPLPIGAVAFFGVTIAVLTNVMKPAQALSGYASTTIWLIVCAFMIARGFIKTGLGKRIAYKIISLLGDSTLKLGYSIVISDAIISPAMPSSGARAGGILFPIVKSLSSALGSEQGDTRKKAGAFFMQTLWQGNAITNGMFLTSMAGNPLIASLALTTFGVEISWGLWAMGAIVPALVSLAVIPYVLYKIYPPQIKDYPEGKKIAKAELAKLGSLKRSEIVMIFVFIGALILWATGSITGLNATTVGMIAVCVMLVFGVLEWNDFICEKGAWDTLIWMGSLITLAGGLSKLGFVTWFAGWMSGTMSGFNWTLVMGILVIVYVFTHYFFASLTAHITAMYATFGAVAIAAGANGVFVALVFAYASNLMMPVTHYGGAPAPIIFGAGYNTQNEWWRLGFIITLINLAIWIIIGSVWWKVLGLW
>NZ_CP010995.1|WP_058893320.1|1086585_1088544_-|type-IA-DNA-topoisomerase
MNENTIIIIESPNKCDKIEHITGAKVYATKGHFKELTNKIVADYKSYEPIFDFKEASKSRINAMFNDCKGKDVIIATDPDREGYSIGYMVYETIKNIAKSVKRAEFHEITESGIKKGLANAVPFASSNLKEFDSFKARAVGDKLVGFIMSPTYINKLNDKNNSVGRVQTPALALIVKRELEIKEFNENKANAKIDYKIKVKLKTKNGIEFTAINDNIFTSKDEANAKISDLNGSLAKVYQIETKEAQTKPKPPFRTSQLQETANKKLGFSSDKTMSLAQKLFEKGLITYHRTDSNSLSNEFIDEVGAKFSSLEWYEKKEYKAGSQSQAEAHEAVRISHVHEYGDLEAIAKKENLTDDEKALYELIFLNSIQSQAKNAINENTIYDIDIKTLSFKAKTSKCIYKGFKNAIVATNDDDDEKDKETQEIALNLAKGDELEILEFSLQEVKKQAPQHYKESNFISLLEKEGIGRPSTYATFLPKLLERDYVKIETKGKNSNIIATPKGINFIQTLKENDDEWITQSEFTKQMENVLDEISSGNVSYLDFIKPLHEKMGFKELNNSQTNPPSEKQLEWAKSIASNLNIALPSGIEADWKICSNFIEKNKDKVVTPPSEKQIELAKKLSKDKGMALPKDYEKNLKICKDFIDKAIKKK
>NZ_CP010995.1|WP_058893321.1|1088540_1089113_-|AAA-family-ATPase
MNKLVINIYGSPGAGKSTLAKNLKKYMREKRIDVGLISEFATELIENNQKEKLKDQPYVTKGQMLNIAKVLKEYDIAISDSPIELGKFYCDPRDEQRTNELIKKCKNMYKSINFFLKLDEQAKQDYTMESRVHTYAQSQKLQERMLASSILRDEMFMIIDRNTQIKEVLKMIEKSKQWKEHQNQSKGLEL
>NZ_CP010995.1|WP_058893322.1|1089131_1090331_-|hypothetical-protein
MAQTQVAKDLLTDSNWINKTQNIIQENVMSLFEKFYQGAHDLVYSTATTTIVILIVSLWLLNRLKNGYPTRNEIFVAVKYIIQLCFIFAILSSFDAYQGILYALTIPENVIITILSSIFEGRDFGAVVTESANRVDNIRALMWNYGTTEYLKTQAWSFLGISFNGVMDYLGAGIITALSMIPFWIFYIVFFLLLVGITIVIFFSKFMAFLILSTLPLVIPFLIIPRFLPYLWSWYKLYLSYAIIAPLAFIALNLAINPILELENYQNYISELFVKQFEYLITGSITCISALFLLKKIPSWINAVLGTQMESGSGGVVGGVVAGAVASKTLLGGLARKASGGSFVGGALSSLGAASGANVAGQIASASIGAGANVAKDIGNGIGKTYEAYKKFKGGYVAP
>NZ_CP010995.1|WP_058893323.1|1090379_1090664_-|hypothetical-protein
MLNEFLNFLGLGCSNKATCKNQLNTDNTDIKENVEMQEYIVEMRSSDFKEEITTETVIKDGKKIEIQKIKTIEPLNSGKTLITTKIYKKDITRM
>NZ_CP010995.1|WP_058893324.1|1090721_1091555_-|DUF1738-domain-containing-protein
MEQVRKSWEQMDNAEKKESFDKYMKFKLFEAHKTAKADWQRDMSKEEVDNTMPYNAKTGNTYSRETNMLLRAEMAIKGYDKPQFVTMEQGNAMGGVLKLKHDELTGEILKTKNGLQARVDGVKMLYIADHEIRPKLDKDGKEVTAVVKDKDGNVKYDQETGQPMTYVVKEKIPIKPRLETKTLYHVSQFDGLDESKIKDRDLTAVTHYREQSKNQDFEVKISYGKTLGISGNLEKQLDNLTLAQIKGVDYYNPAVKVEMTKEKAQAKEQNKGIEQGR
>NZ_CP010995.1|WP_058893325.1|1091978_1093898_-|type-IV-secretion-system-DNA-binding-domain-containing-protein
MDDTQKFSTKKWIIIFISSLIMGVLAYLAMVKVIFNPDLVNVPAVAIKILNNIGSPMLKLKAYVALFALVAPFLVVVAWWLMPYFSDNENYGSARFATPDDFKKMSINYKNGLVLGCLNIDSENPKFLRATRPLATLVVAPPGSGKTAGMIIPNLLSIPNSSVTLDIKGELYQKTAGYRQKYFKNEIQLFSPFSWDNTLFFNPFDNSIVKDMEYIRIKKLADQIANTIFVTEKDKENDHWVLSAKTLFVFFAEYFMQKNKHTTLGELAQAPKADYFDYLDEKFGEEAMKEIDEDDPEAPRERDYDVDTFKIWLKQTANDTSIDESTRNQARAYSKAAENEFASIKSTYDTFMKVFSHPQVASATSKMSFAFEDLREKRISMYVVIQTEDMEILAPLIRIFIETLFKKLMSGKENSDPDKFIYCFLDEFVRFGKMPFLLEAPALCRSYGLLPVFVTQAYEQIKKYYGEDDMNIVKNNSGYHVIFGMNSEKDAKDTSELIGDYTNIKISKSQGNMDLFKSNISKSKEAKRLVTAQDLKNQDSNDIYILVSKFFKIPIKAKVPYWFKIVQFKGANEIEVKAIAQKEQTNTHKPQDTNILQNSPATAQQNSQKTNESKVEVADMDKQQRDELLKALKIKVDRE
>NZ_CP010995.1|WP_058893326.1|1093890_1094298_-|hypothetical-protein
MRKMVGHFIYFNEADARVLTRIAKSRNESKSAIVRKLIHIEKYAQTLKQIEINNNILADFLQEFKHLGKNLNQIAYHLNAHIIKKNEAKSDLEKNMQDFAQAIEKLDKKISKLEIKIIEKTRTPSSNEIKGEENG
>NZ_CP010995.1|WP_058893327.1|1094294_1095239_-|ATP-binding-cassette-domain-containing-protein
MAESIILNNILGVLKPYLNLNANELIFNKPCEINVDYGDHWEIIQDTKLDAKFLNNFLVELATRRNQRFDESHCHLSCELPEPFLRYRVQAQHKSSLFNSEIAICIRIPSKEIYPLESFILSEKCINDGWNYDKIKELIHKKKNVLLSGGTGSGKTSFLNSLMGEIDPNERVVTIEDSQELRVENINKTQLAVPKIATEIYSYQVAIDNAMRLRPDRLFLGEIDIRNTFSFLRVNNTGHAGNLSTLHANSPRDAIKAIKTNVILGGGLSNVDDKMLDSLIITAIDYIIQIQRVKNKRIVTDILNLKEDMARIVV
>NZ_CP010995.1|WP_058893328.1|1095240_1095462_-|hypothetical-protein
MQYEKIKSEVQTELQNKKANDRLLERISQQLKVTEKAQAVLDREKQKLENLVAQKQNLSNGVTTKQVEQDKEE
>NZ_CP010995.1|WP_058893329.1|1095472_1096678_-|TrbI/VirB10-family-protein
MKKGNKTLFLSLATINILSAPLFANNQEAVLNLDNGNKSKLDRQIRNLQNQADLSHLFENSKFPVDDYIYKAGKREPNQDQNLTQILKDFEKLDQKQKAQVDKNLIQPSQYAEQEQEEMTQHIKQKQEELQAQQEQLKQEMAMDSQKAYKKRMQELIRAQILANRNNEVKSVNQNSSKFGVDGFSNQKSIDISTNEHRLYRTIRAGRMIPAILTTAISSDLSGIVTAQIEQDIYASMGRAVLIPRGSKAIGFYTNNTKIGHERLEIRWREIITPQGINIMLTDALVADNMGMAGAIGAINNKYWERYGIAYSISTITNGIMLGIASKMNTNGSANNQYATEMYSNARSDISSIVQDIMQQQSQIKPTIEIRSGSRIFLVPTNHMWFAKPKNGEVLMQYFKD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP010995_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010995_3

1712189-1712293

Orphan

Consensus_repeat	Method
AATGGAATTATAAGCGGTAATGTTTATGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010995_3

>merge|NZ_CP010995|3|1712189-1712293|CRISPRCasFinder
AATGGAATTATAAGCGGTAATGTTTATGGCGGTAACGGTGGATTTAGAGCAGATAGTAACACTATAAATATATCCAATGGAATTATAAGTGGTAATGTTTATGGC

>NZ_CP010995|3|3|1712189-1712293|CRISPRCasFinder
AATGGAATTATAAGCGGTAATGTTTATGGC	GGTAACGGTGGATTTAGAGCAGATAGTAACACTATAAATATATCC
AATGGAATTATAAGTGGTAATGTTTATGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010995.1\|WP_058893673.1\|1714520_1716338_-\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237050
NZ_CP010995.1\|WP_038455252.1\|1704839_1705427_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
NZ_CP010995.1\|WP_058893669.1\|1701208_1701721_-\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NZ_CP010995.1\|WP_038455270.1\|1718301_1718748_-\|CopD-family-protein	unknown	unknown	gnl\|CDD\|367596
NZ_CP010995.1\|WP_058893670.1\|1705423_1706728_+\|flagellar-protein-export-ATPase-FliI	unknown	unknown	gnl\|CDD\|181439
NZ_CP010995.1\|WP_038455271.1\|1718808_1719171_-\|NINE-protein	unknown	unknown	gnl\|CDD\|377473
NZ_CP010995.1\|WP_038455273.1\|1719170_1719611_-\|lipoprotein-signal-peptidase	unknown	unknown	gnl\|CDD\|234739
NZ_CP010995.1\|WP_058893668.1\|1699691_1701206_-\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|223679
NZ_CP010995.1\|WP_058893777.1\|1717812_1718163_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380097
NZ_CP010995.1\|WP_051870958.1\|1701720_1702791_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP010995.1\|WP_038455258.1\|1708098_1709100_+\|iron-sulfur-cluster-assembly-scaffold-protein-NifU	unknown	unknown	gnl\|CDD\|273921
NZ_CP010995.1\|WP_058893674.1\|1716589_1717720_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NZ_CP010995.1\|WP_038455250.1\|1703396_1704704_-\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NZ_CP010995.1\|WP_058893675.1\|1721396_1722464_+\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NZ_CP010995.1\|WP_038455248.1\|1702806_1703397_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_CP010995.1\|WP_058893671.1\|1706884_1708075_+\|cysteine-desulfurase,-NifS-family	unknown	unknown	gnl\|CDD\|132444
NZ_CP010995.1\|WP_038455277.1\|1721123_1721390_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP010995.1\|WP_038455264.1\|1714005_1714524_-\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NZ_CP010995.1\|WP_038455275.1\|1719603_1720944_-\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|184621
NZ_CP010995.1\|WP_038455260.1\|1709290_1711252_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599

Protein	Function_ID	Function_description	E-value
NZ_CP010995.1\|WP_058893673.1\|1714520_1716338_-\|threonine--tRNA-ligase	gnl\|CDD\|237050	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.	0
NZ_CP010995.1\|WP_038455252.1\|1704839_1705427_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	2.32074e-113
NZ_CP010995.1\|WP_058893669.1\|1701208_1701721_-\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	1.20711e-69
NZ_CP010995.1\|WP_038455270.1\|1718301_1718748_-\|CopD-family-protein	gnl\|CDD\|367596	pfam03653, UPF0093, Uncharacterized protein family (UPF0093).	2.32863e-47
NZ_CP010995.1\|WP_058893670.1\|1705423_1706728_+\|flagellar-protein-export-ATPase-FliI	gnl\|CDD\|181439	PRK08472, fliI, flagellar protein export ATPase FliI.	0
NZ_CP010995.1\|WP_038455271.1\|1718808_1719171_-\|NINE-protein	gnl\|CDD\|377473	pfam05154, TM2, TM2 domain. This family is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.	9.97687e-11
NZ_CP010995.1\|WP_038455273.1\|1719170_1719611_-\|lipoprotein-signal-peptidase	gnl\|CDD\|234739	PRK00376, lspA, lipoprotein signal peptidase.	2.55694e-38
NZ_CP010995.1\|WP_058893668.1\|1699691_1701206_-\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP010995.1\|WP_058893777.1\|1717812_1718163_+\|hypothetical-protein	gnl\|CDD\|380097	pfam18050, Cyclophil_like2, Cyclophilin-like family. This entry represents a family of cyclophilin-like proteins found in a range of bacterial species.	2.91795e-24
NZ_CP010995.1\|WP_051870958.1\|1701720_1702791_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.08017e-15
NZ_CP010995.1\|WP_038455258.1\|1708098_1709100_+\|iron-sulfur-cluster-assembly-scaffold-protein-NifU	gnl\|CDD\|273921	TIGR02000, Nitrogen_fixation_protein_NifU, Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation].	2.59295e-68
NZ_CP010995.1\|WP_058893674.1\|1716589_1717720_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	2.46559e-155
NZ_CP010995.1\|WP_038455250.1\|1703396_1704704_-\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	3.4413e-112
NZ_CP010995.1\|WP_058893675.1\|1721396_1722464_+\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NZ_CP010995.1\|WP_038455248.1\|1702806_1703397_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	7.91706e-150
NZ_CP010995.1\|WP_058893671.1\|1706884_1708075_+\|cysteine-desulfurase,-NifS-family	gnl\|CDD\|132444	TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (), so we use this designation.	0
NZ_CP010995.1\|WP_038455277.1\|1721123_1721390_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	8.5538e-25
NZ_CP010995.1\|WP_038455264.1\|1714005_1714524_-\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	1.3095e-83
NZ_CP010995.1\|WP_038455275.1\|1719603_1720944_-\|phosphoglucosamine-mutase	gnl\|CDD\|184621	PRK14324, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_CP010995.1\|WP_038455260.1\|1709290_1711252_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	8.95145e-42

>NZ_CP010995.1|WP_038455260.1|1709290_1711252_+|methyl-accepting-chemotaxis-protein
MILSKSIAAKVTASVVALFAILFVILTYINYSDARDNSLELLNVERTKAINATQTILKENIGTSIEEIENLVNLIAKSDLQDDNILNMLKIAKETSGFALLYLGMSDNGVVYYSDGRTRYPDANYDPRKRGWYQEAVKQNKTIITDPYVSNSTGEYTITIAKPLYVNNKMVGVVSGDFSTVELSKDIIEIGKVDDGYILIMNNEGKILVDADSKFIGKTPNFTKELLQKLQAKDFDKFGRVSYAYEDGSQKISRCQQTGYNNWLVCTVMDSNYFDKQTDKILEKQIILVVIFLIFSAFTVWFLIKNSLKPLHTIVDGLTDFFDFLHHKNDNPKVIEIKTNDEFGIISKLINENIANVKSALDQDDKAVNESLTRAKEVESGNLSVRIINTPYSPGLRQLRDVLNNMLDVLQAKIGKDINVIQKTFDDFKNLDFTSSISDANGEVEKVTNLLGSQITNMLRDNLAQANNLQEKANDLKTYVSSLNEGAKSQAESLQESAAAVEEMSSSMNSINERASEVIKQSEDIKNIITIIRDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLGEIEANVNILSQSINEMSQSIGEQTEAINQINQAVVSVDELTKQNVDIASNSNRVTTEVEKIADIIVSEVKKKKF
>NZ_CP010995.1|WP_038455258.1|1708098_1709100_+|iron-sulfur-cluster-assembly-scaffold-protein-NifU
MAKGNLISGNIWDEYSQKVQDAMNHPKNMGEITEEQAEAMGCTLIIADHGAESCGDAVRLYWAVENGTEIIKDAKFKSFGCGTAIASSDYMAELCKGKTVDEAVKITNIDVEKAMRDTPETPAVPPQKMHCSVMAYDVIKAAAASYKGVDPEHFEDEIIVCECARVSLGTIKEVIRLNDLKTVEEITQYTKAGAFCKSCIKPGGHEKKEYYLVDILAETRAEMEAERMQAVANAKVSGSGLESDLSFEELTVVKQLKAIEAVIDEHIRPMLVMDGGNMEILDIKKDDESGKIDVYIRYLGACSGCASGATGTLYAIENILQENLSPNIRVLPV
>NZ_CP010995.1|WP_058893671.1|1706884_1708075_+|cysteine-desulfurase,-NifS-family
MKVYLDNNATTMIDPEAYELMLPFLSDKFGNPNSLHSYGSETHPALRTAMDQLYACINAKDSDDIIVTSCATESNNWVLKGIYIDKILKGDKKRIVTTTVEHPAIGATCTFLESIGVEVTRIDVNEEGVITGDDLRRVMSDDVALVSVMWANNETGMIFPIKELASIAHEFGALFHTDAVQAMGKISVNVRDADVDFLSFSAHKFHGPKGVGGLYIKDSMPLTSLLHGGEHMGGRRSGTLNVAGIVAMGKALENATKFIKYEESHVRRLRDKLEDALLALPEVTVVGQKEHRVPNTILASIKGVEGEAMLWDLNQAGIAASTGSACASEDLESNPIMEAIGADSELAHTALRLSLSRFNTEAEIDYAIEKIKNAVTRLRAISSSYAYAPDWHKSGL
>NZ_CP010995.1|WP_058893670.1|1705423_1706728_+|flagellar-protein-export-ATPase-FliI
MSLENLKSKLDKSLNLSSVFGTISKISASTIEIIGLRPSIGDIVRIASNDGLKSELGMVTAISQKGANVSPFGFVEGFKIGDKVYTSDQGMNIPVGDELIGRVVDPFMNPKDGKGPINADSYAPIMRAPIPAMKRGLINEPFSVGIKTIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKNSTAPIKVIALIGERGREVPEFIQKNLGGDLSNAVIIVATSDDSPLMRKYGAFCAMSVAEYFKSSGKDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLTLLPQLMERAGKEEGKGSITAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMGDVTSKEHRANASKFKRLFSTLKENEVLIRIGAYQKGADKELDLAISKKSFMEEFMKQSPNEGFEFEEIIKMLEQIN
>NZ_CP010995.1|WP_038455252.1|1704839_1705427_+|GTP-cyclohydrolase-I-FolE
MFDESRRSEFENCVKTMLEIMGEDPKRGGLLDTPKRVAKAYEFITSGYSMDPKDVLNDALFQSSNNEMVLIKDIEFYSVCEHHLLPIIGRVHVAYIPDGQVVGLSKIPRMVNIYARRLQIQEQMTEQIAQAIAETIKPKGVGVVVEARHMCVEMRGVEKINSITTTSALRGSFIKSAETRKEFFDLINSPRSVKF
>NZ_CP010995.1|WP_038455250.1|1703396_1704704_-|trigger-factor
MEVKAQLLNPANATATTQIKADELNAKVENLAKKAAKNIKIDGFRKGKVPTAEVLKRYGGDLQNDARNEFFKDIINACLVDINKKADEIIGEPMVLKFDEKDGNIDVEIEISFKPEVKVDGYEELISDYATPRVTKKEIEDKVNEFLLMMAPVEKVEKDVLEKGDWAKFNFEGFVDGVAFEGGKAEDYVLEIGSNQFIPGFEDGMIGLKVGEEKDVNVTFPKEYGAAHLAGKPAVFKVKLLEIQGKKVGELDEKTLKALLPTEENPTAAKLEEKIKEQIRNEKFQKLLNEELKPKFADKAVEKFKFDLPKNIVEQEMDMQFRNAWGNFSEDERKKFSEDRDAAMAQRETYADEAKKSVALTFIIDELAKVRGVSVSDQELLQAVYFEAYRYGIDPKKHLEDYKNQGMLPAVKMAMIEEKLFNNLFKKDAKDEKGE
>NZ_CP010995.1|WP_038455248.1|1702806_1703397_-|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MSYYVPYVVERTSKGERSYDIYSRLLKDRIIMLSGEIEDSMASAIVAQMLFLEAEDPDKDIYLYINSPGGVVTSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGTKGKRYALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKEVLNGTLAKNTGQKLAKIAKDTDRDFFMSAEEAAQYGLIDKVLEKSFK
>NZ_CP010995.1|WP_051870958.1|1701720_1702791_-|diguanylate-cyclase
MVKLRNDKDRIDINKSSTSLGDSQKTVATRSARISEKNDDNVDLNKFSQQVLKQLSDDNVQATPGNFDIYFGKLLETKSSTFQKRVLELLDCEKNDDIDQQALMEKEISLGFGQIKNMLQTITLIYKNLVVMKGIVQKRLDETRANANPLEAQTIIKFFSEELDKLNSLMAKHLEIIRNNYDDVNKIFKRVEAQSIYDSKFGVYNKKYFLKTVEEELINVKRYNYNVSVMLIHIKDRVLDLIPSVKDKNGILRNIAKILLKTSRRSDVVAHYGEGCFGMVMKHTDITGAKKACERIGQMLYQTTFFIGEEELDMDMEISVIALNPEYSSEEIISKALDGLPNSGKRTKLYEVIEGI
>NZ_CP010995.1|WP_058893669.1|1701208_1701721_-|peptide-deformylase
MILEVLTYPDKRLYDIGLEVTKFDDELGKFLDDMYETMIAKNGIGLAALQVGKPIRAFIVNLVNENEVQDKNDLLEIINPKFLKKDGEIVYQEGCLSVPDYYEDVRRAEHIEIEYFDRYGNKKTLEAKGLLAVAIQHENDHIDGHLFIERIGFNKRKKFDKEYKKKVKTK
>NZ_CP010995.1|WP_058893668.1|1699691_1701206_-|YifB-family-Mg-chelatase-like-AAA-ATPase
MKSLKSASLSDKLHIIDIEASFLRALPSFDIVGLASTTIKESVSRVKSSLSLLGDFAFPALRIIINLSPSDVKKDGSHFDLPIALLILLQKEKFDSEFFVFGELGLDGSVKSTAELFSILLFLSTKVKSAKVLVPKDIALKAAMIPNLDVFSISNLAEAREFFRNDEFKNECKVQATHPLFQNVIEINGKKFVPNTKFELDFKEIKGQERAKRACLIAASGMHNILFEGSPGCGKSMSAKRLAYILPPQSLDEILLASAYESLNSNDADFNALRAFRSPHHTSTRSSIFGGGSARAKIGELGLANGGVLFFDEFPHFGKQILESLREPLEDNKINISRVNSKVSYETKFIFVAAQNPCPCGNAFSKTALCRCTQKEIDKYQSSVSKALLDRIDVYVAMSDVNASDQPSMSSKEMQSMVLRAFEAQIMRGQSELNGKLSDADIAKFCLLDDEAKGILDKAVSSYNLSQRGINKTLKVARSIADLEGSQTIKKAHILESLSYRMKA
>NZ_CP010995.1|WP_038455264.1|1714005_1714524_-|translation-initiation-factor-IF-3
MSKEKDVYLNEEIRASEVRCVGDEGTVYGVLSRDEAQEIANKMGLDLVLIAPDAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIEVKEIKLSIKIAQNDINYKIKHAQEFLDEGKHVKFRVFLKGREMAAPEAGVVMLEKIWELIKDFAERDKAPNLEGRYVNMLVTPKKA
>NZ_CP010995.1|WP_058893673.1|1714520_1716338_-|threonine--tRNA-ligase
MSDVIAYKVNGVVVDTQSYDGNSGEEILFDNSKEALDVIRHSCAHLMAAAIKELYPNAKFFVGPAIEDGFYYDMRVMGNGGEKLGEADLELIEKKMKELALAKTDIVKLNSTKAEVAAKYASDDLKQEVLKRIPDGVVSLYSQGNFEDICRGPHVPNTIFTRFFKLTRIAGAYLGGDENREMLTRIYGTAYADKESLKEHIRIIEEAKKRDHRKLGAEMKFFTFDDDIGVGLPIWLPNGARLRSKLEHKLYKTHRLRGYEPVRGPEILKSDAWKISGHYANYKENMYFTVIDEQEYGIKPMNCVGHIKVYQSDIRSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCMPSQIKENVYEILSFVDTLMSAFGFSYEMEISTKPAKAVGDDEVWEIATKALKDALDEKGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQVDFNLPKRFDLGYIDENNERKQPVMLHRAIMGSFERFIGILLEHTAGELPFWIAPTQVVIIPIADEHLAYAKEVHSLLLELGVDSEISSKNETLNKKIRTAEKQRVPMIIVLGDNEVASRGVALRDRRAREQKDMNLDEFLSFIKVKLNEVNI
>NZ_CP010995.1|WP_058893674.1|1716589_1717720_+|NAD(P)-dependent-alcohol-dehydrogenase
MQRREFMKKTAIAGVALAAGTSLFGAAGKSTITCKGYAAFDESGELKPWKFQRRAVRENDILFEVKATSICHSDIHTELGHWGKQTYPQVPGHEIVGVVTEVGSKVTKFKVGDRVGVGCMVDNADVPSLQGKSEQYDANTVFTYGQSYKAEPTGISQGGYSDYFVVHEHFAVHLPDDIDFNHAAPLMCAGITTYSPLMKYQIKKSDNVGVAGIGGLGHLAVKIALSKGANVTAFTTTPSKVKDIQSWGAAAVVVSSPDDLAKFRAKFDYVISTIPYEFDMMPYIAMVKPFGNFTVVGMPVNFSQKIQTLALAATKVNFNASLIGDMKETQEMVDYCAKNKIYPEIEIIKADEINAAWKKVVNKEARYRFVIDPKTF
>NZ_CP010995.1|WP_058893777.1|1717812_1718163_+|hypothetical-protein
MQSEFSISLTDNSPASELVKQLKNSPLTLKMSDFSNFEKVGNLPFSLPRNDEPISTDAGDVILYQGSRFVIYYDQNSWNFTRLGVIDELKNGKISKAEFIKFLGNGDIEATLRVKE
>NZ_CP010995.1|WP_038455270.1|1718301_1718748_-|CopD-family-protein
MGYETYLWIKWLHYLAFISWMAMLFYQPRLYVYHAEHMENKGFTDVVKIQESKLYHGIGWIAMGVTLLTGLAIILFSKPELMKAGYFHIKLLCVVILIAYHFSLGHYLKLFKENRCFKSGKFFRMYNEVPTIIMFVIIFAMIIKANLM
>NZ_CP010995.1|WP_038455271.1|1718808_1719171_-|NINE-protein
MQRNIYIAYALWFFLGGFGAHRIYCGKFFSGILQLLLFWIGSITAVFLVGYFFLAIWGIWWLVDIFLTSKMVYEVNDLNGFEKSLNQTQRLKNVEKLYELYKNGAISKEEFEQRKAEILK
>NZ_CP010995.1|WP_038455273.1|1719170_1719611_-|lipoprotein-signal-peptidase
MSRVIFKFLAYFTAIFAIDQAIKWVFLHGFRYKGEFIDLVLVYNKGVAFSMFAFLGANLKYIQLGLIALLFGYLFGQKELLKTHTVAFGMLIGAGCSNILDRFVHGGVVDYIFWHKWFDFAVFNFADVMIDVAIVIIIIQSFIRKK
>NZ_CP010995.1|WP_038455275.1|1719603_1720944_-|phosphoglucosamine-mutase
MKLFGTDGVRGKAGEKLDAMMAMRLAMAAGIYFRKNSITNKILVGKDTRKSGYMIETAIVAGLTAVGYNVIQIGPMPTPAVAFLTEDMRCDAGIMISASHNPFYDNGIKFFDGFGNKLSVEVEKAIEDIYFNDEIINQNQKTGLEIGQSKRIDDVIGRYIVHIKNSFPNKLTLKGLRVVLDVANGAVYKVAPTVFSELGAETIVLNDTPNGGNINSNCGALHPENLAKEVKHLRADIGFAFDGDADRLVVVDEDGKVIDGDALLGVLASYLNENKMLAKKEIVATVMSNAALDDYLSKHGINLLRSNVGDKFVLEMMKENGANFGGEQSGHIVFSDFAKTGDGLVSALQVSACLLAKKKKASEIFGCIKPYPQKLLNLKIVEKKPLEEIKGLKELESELKKQGIRTLFRYSGTENVIRLLLEGKDENLVSKKMSEVEKFFTKALNE
>NZ_CP010995.1|WP_038455277.1|1721123_1721390_+|30S-ribosomal-protein-S20
MANHKSAEKRARQTIKRTERNRFYRTRLKNITKAVRVAVANGDKETALVALKDANKNLHSFVSKGFLKKETASRKVSRLAKLVNTIAA
>NZ_CP010995.1|WP_058893675.1|1721396_1722464_+|peptide-chain-release-factor-1
MLADKLQPFIDRYNELNSLLSDPSVISDISRMTKLSKEQRNIEPIKDATHKYLQILNDIEENKALLEDPELGDLAKEELKNLEAALPELEEEIKVLLLPKDPNDEKNIYLELRAGTGGDEAALFVGDLATAYIRYTEQRGYKYEIVSSSEGSAGGYKELILLIKGDGAYSRLKFEGGTHRVQRVPETESQGRVHTSAITVAIMPEVEDSEIEINPNDLKIDVMRSSGHGGQSVNTTDSAVRVTHIPTGLVVVNQDGKSQHKNKDAAIKVLKARLYDMQESERREKESKERKDQVGTGDRSGRIRTYNYPQNRISDHRINLTLYRLDAIMAAGLFDEIIDPLIAHHQAEAIANAGL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

45966 : 53688

uncultured_Mediterranean_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058893728.1\|45966_46740_+	3-deoxy-manno-octulosonate cytidylyltransferase	A0A1B1IVD3	uncultured_Mediterranean_phage	1.2e-06	34.9
WP_058892762.1\|46730_47582_+	FkbM family methyltransferase	A0A1B1IVQ8	uncultured_Mediterranean_phage	1.3e-35	37.0
WP_082663198.1\|48201_49377_+	NAD-dependent epimerase/dehydratase family protein	A0A1V0SKV4	Klosneuvirus	1.7e-28	34.0
WP_069435763.1\|49495_50056_+	CatB-related O-acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	4.5e-16	37.8
WP_058892764.1\|50170_51148_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_058892765.1\|51149_51569_+	hypothetical protein	NA	NA	NA	NA
WP_058892767.1\|51884_52811_+	phosphoglycerate dehydrogenase	A7ITA6	Paramecium_bursaria_Chlorella_virus	1.0e-28	31.9
WP_058892768.1\|52800_53688_+	NAD(P)-dependent oxidoreductase	A0A2H4UUK0	Bodo_saltans_virus	1.1e-21	31.8

DBSCAN-SWA_2

58726 : 67900

Klosneuvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058892774.1\|58726_59665_+	NAD(P)-dependent oxidoreductase	I7HTA3	Enterobacteria_phage	2.8e-18	28.7
WP_058892775.1\|59665_60571_+	glycosyltransferase	A0A1V0SAH6	Catovirus	8.9e-14	37.3
WP_058892776.1\|60572_61397_+	SDR family oxidoreductase	A0A1V0SKV4	Klosneuvirus	3.2e-10	31.4
WP_058892777.1\|61396_62488_+	hypothetical protein	NA	NA	NA	NA
WP_058892778.1\|62487_64116_+	asparagine synthase (glutamine-hydrolyzing)	M1PN68	Moumouvirus	3.7e-26	26.9
WP_156412497.1\|64142_64334_+	hypothetical protein	NA	NA	NA	NA
WP_082663199.1\|64348_65488_+	N-acetyl sugar amidotransferase	NA	NA	NA	NA
WP_058892780.1\|65484_66096_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_058892781.1\|66096_66870_+	imidazole glycerol phosphate synthase cyclase subunit	A0A1V0SIZ6	Klosneuvirus	2.0e-06	26.4
WP_058892782.1\|66856_67900_+	acyltransferase	Q716G0	Shigella_phage	2.1e-06	25.5

DBSCAN-SWA_3

918276 : 996584

Campylobacter_phage(23.08%)

terminase,capsid,integrase,portal,plate,tRNA,tail

attL 961154:961173|attR 996871:996890

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058893200.1\|918276_919380_-\|tRNA	CCA tRNA nucleotidyltransferase	A0A0U4J6Z1	Vibrio_phage	1.0e-24	30.8
WP_038454230.1\|919339_919678_-	hypothetical protein	NA	NA	NA	NA
WP_038454232.1\|919674_919920_-	hypothetical protein	NA	NA	NA	NA
WP_038454234.1\|919916_920987_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_038454237.1\|921000_921477_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_058893201.1\|921573_922173_-	LysE family translocator	NA	NA	NA	NA
WP_058893202.1\|922172_922778_-	LysE family translocator	NA	NA	NA	NA
WP_058893203.1\|922894_923371_+	DUF4405 domain-containing protein	NA	NA	NA	NA
WP_058893204.1\|923402_924446_-	type II asparaginase	NA	NA	NA	NA
WP_058893205.1\|924578_925859_-	DNA recombination protein RmuC	NA	NA	NA	NA
WP_038454249.1\|925975_926896_+	AEC family transporter	NA	NA	NA	NA
WP_038454252.1\|926926_927136_-	alkylphosphonate utilization protein	NA	NA	NA	NA
WP_038454254.1\|927254_928136_+	DMT family transporter	NA	NA	NA	NA
WP_038454256.1\|928174_929812_-	chaperonin GroEL	A0A219YK78	uncultured_virus	6.2e-167	61.2
WP_038454258.1\|929822_930086_-	co-chaperone GroES	A0A221S4G8	uncultured_virus	3.2e-09	40.2
WP_058893206.1\|930304_932851_+	hypothetical protein	NA	NA	NA	NA
WP_038454262.1\|932847_933435_-	NUDIX hydrolase	NA	NA	NA	NA
WP_038454264.1\|933419_934778_-	magnesium transporter	NA	NA	NA	NA
WP_058893207.1\|934786_935953_-	peptidoglycan DD-metalloendopeptidase family protein	A0A2P1JY73	Gordonia_phage	5.3e-19	43.1
WP_058893208.1\|936063_936723_-	sel1 repeat family protein	NA	NA	NA	NA
WP_038454270.1\|937047_937227_-	hypothetical protein	NA	NA	NA	NA
WP_038454272.1\|937249_937717_-	hypothetical protein	NA	NA	NA	NA
WP_038454274.1\|938175_938898_+	hypothetical protein	NA	NA	NA	NA
WP_058893209.1\|938897_940277_+	FAD-binding protein	NA	NA	NA	NA
WP_038455593.1\|940297_941089_+	YihY family inner membrane protein	NA	NA	NA	NA
WP_038454278.1\|941148_942603_+	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	9.5e-143	56.6
WP_058893210.1\|942611_943667_+	hypothetical protein	NA	NA	NA	NA
WP_038454282.1\|943682_944603_-	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_058893211.1\|944599_945016_-	FxsA family protein	NA	NA	NA	NA
WP_058893212.1\|945012_946716_-\|tRNA	proline--tRNA ligase	A0A2I2L3K8	Orpheovirus	9.8e-06	24.5
WP_038454287.1\|946715_947981_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_058893213.1\|947980_948865_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_038454291.1\|948851_949289_-	hypothetical protein	NA	NA	NA	NA
WP_038454293.1\|949281_949545_-	DUF2018 family protein	NA	NA	NA	NA
WP_058893759.1\|949614_951687_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	7.1e-83	48.8
WP_058893214.1\|951849_954270_-	hypothetical protein	NA	NA	NA	NA
WP_058893215.1\|954371_955913_-	inorganic phosphate transporter	M4QMY4	Ostreococcus_lucimarinus_virus	1.7e-36	26.0
WP_038454300.1\|955969_956902_-	4-hydroxythreonine-4-phosphate dehydrogenase	NA	NA	NA	NA
WP_058893216.1\|956898_957672_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_058893217.1\|957719_958544_-	adenylosuccinate lyase	NA	NA	NA	NA
WP_038454306.1\|958588_959314_-	arginyltransferase	NA	NA	NA	NA
WP_058893218.1\|959306_959537_-	hypothetical protein	NA	NA	NA	NA
WP_038454310.1\|959540_960986_-	acetyl-CoA carboxylase subunit A	NA	NA	NA	NA
961154:961173	attL	NA	NA	NA	NA
WP_058893219.1\|961371_962286_-\|tail	phage tail protein	NA	NA	NA	NA
WP_058893220.1\|962276_962480_-\|tail	phage tail protein	NA	NA	NA	NA
WP_058893221.1\|962476_962956_-	hypothetical protein	NA	NA	NA	NA
WP_058893222.1\|962952_963339_-	hypothetical protein	NA	NA	NA	NA
WP_058893223.1\|963342_965643_-\|tail	phage tail tape measure protein	A7YG97	Campylobacter_phage	1.8e-42	27.1
WP_058893224.1\|965685_965883_+	hypothetical protein	NA	NA	NA	NA
WP_058893225.1\|966005_966263_-	hypothetical protein	NA	NA	NA	NA
WP_058893226.1\|966274_966505_-	hypothetical protein	NA	NA	NA	NA
WP_082663247.1\|966518_967007_-\|tail	phage tail protein	A7YGZ4	Campylobacter_phage	1.9e-10	26.1
WP_058893228.1\|967115_968225_-\|tail	phage tail sheath family protein	A7YGH4	Campylobacter_phage	4.9e-30	27.2
WP_058893229.1\|968214_968670_-	glycoside hydrolase family protein	A0A1L2CUV5	Pectobacterium_phage	1.8e-15	34.2
WP_058893230.1\|968666_968993_-	hypothetical protein	NA	NA	NA	NA
WP_058893231.1\|969124_969502_-	hypothetical protein	NA	NA	NA	NA
WP_058893232.1\|969562_969811_-	hypothetical protein	NA	NA	NA	NA
WP_058893233.1\|969807_970236_-	hypothetical protein	A0A0F6R5Y6	Sinorhizobium_phage	3.6e-05	43.3
WP_058893234.1\|970248_971784_-	hypothetical protein	A0A2K9VI36	Pseudomonas_phage	1.6e-31	27.9
WP_058893235.1\|971796_972906_-\|tail	phage tail protein	A0A1V0DZY8	Clostridioides_phage	2.7e-28	42.8
WP_058893236.1\|972943_973552_-	hypothetical protein	F1BUP2	Erwinia_phage	1.2e-06	29.1
WP_058893237.1\|973544_974582_-\|plate	phage baseplate protein	NA	NA	NA	NA
WP_058893238.1\|974585_974873_-	GPW/gp25 family protein	NA	NA	NA	NA
WP_058893239.1\|974955_975573_-\|plate	phage baseplate assembly protein V	A0A0E3Y4V1	Fusobacterium_phage	3.0e-05	31.5
WP_058893240.1\|975676_976060_-	hypothetical protein	NA	NA	NA	NA
WP_058893241.1\|976049_976334_-	hypothetical protein	NA	NA	NA	NA
WP_058893242.1\|976305_976521_-	hypothetical protein	NA	NA	NA	NA
WP_058893243.1\|976653_978369_-\|capsid	phage major capsid protein	A0A0K1Y730	Rhodobacter_phage	1.2e-19	21.9
WP_058893244.1\|978365_979754_-\|portal	phage portal protein	A0A1W6JT60	Escherichia_phage	1.5e-28	26.9
WP_058893245.1\|979762_979981_-	hypothetical protein	NA	NA	NA	NA
WP_058893142.1\|980311_980668_+	HicB family protein	NA	NA	NA	NA
WP_058893246.1\|980647_981142_-	hypothetical protein	NA	NA	NA	NA
WP_058893247.1\|981143_981404_-	hypothetical protein	NA	NA	NA	NA
WP_058893248.1\|981400_983113_-\|terminase	terminase	A0A0C5ABH4	Bacteriophage	1.4e-84	35.1
WP_058893249.1\|983801_984479_+	sce7726 family protein	NA	NA	NA	NA
WP_058893250.1\|984442_985522_-	hypothetical protein	NA	NA	NA	NA
WP_058893251.1\|985526_985934_-	hypothetical protein	NA	NA	NA	NA
WP_058893252.1\|985948_986140_-	excalibur calcium-binding domain-containing protein	Q19UP2	Mannheimia_phage	3.8e-07	42.9
WP_058893760.1\|986150_986852_-	hypothetical protein	NA	NA	NA	NA
WP_058893253.1\|986847_987396_-	hypothetical protein	NA	NA	NA	NA
WP_082663224.1\|987435_988251_-	LexA family transcriptional regulator	Q76TK4	Streptococcus_pyogenes_phage	2.4e-10	38.5
WP_141070371.1\|988345_988654_+	hypothetical protein	NA	NA	NA	NA
WP_156412508.1\|988943_989084_+	hypothetical protein	NA	NA	NA	NA
WP_058893256.1\|989059_989296_+	hypothetical protein	NA	NA	NA	NA
WP_058893257.1\|989282_989504_+	hypothetical protein	NA	NA	NA	NA
WP_058893258.1\|989507_989963_+	hypothetical protein	NA	NA	NA	NA
WP_156412509.1\|989959_990127_+	hypothetical protein	NA	NA	NA	NA
WP_058893259.1\|990135_991044_+	hypothetical protein	X2KQ81	Campylobacter_phage	5.4e-27	34.4
WP_082663225.1\|991055_991802_+	site-specific DNA-methyltransferase	X2KR14	Campylobacter_phage	2.6e-112	78.5
WP_082663226.1\|991814_992141_+	hypothetical protein	NA	NA	NA	NA
WP_058893260.1\|992142_992592_+	hypothetical protein	NA	NA	NA	NA
WP_058893261.1\|992641_992833_+	hypothetical protein	NA	NA	NA	NA
WP_058893262.1\|992845_993058_+	hypothetical protein	NA	NA	NA	NA
WP_058893263.1\|993177_994026_+	hypothetical protein	NA	NA	NA	NA
WP_058893264.1\|994123_994363_+	helix-turn-helix transcriptional regulator	M5A9C2	Nitratiruptor_phage	1.1e-08	40.8
WP_058893265.1\|994854_995322_+	hypothetical protein	NA	NA	NA	NA
WP_058893266.1\|995360_996584_-\|integrase	tyrosine-type recombinase/integrase	X2KXI6	Campylobacter_phage	8.0e-26	28.0
996871:996890	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1367368 : 1453135

100

Campylobacter_phage(17.24%)

terminase,capsid,integrase,portal,plate,tRNA,tail

attL 1441719:1441734|attR 1452091:1452106

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058893478.1\|1367368_1369705_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_058893479.1\|1369701_1370694_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	1.7e-34	35.3
WP_038454745.1\|1370809_1371169_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_038454747.1\|1371197_1372049_-	universal stress protein	NA	NA	NA	NA
WP_038454749.1\|1372059_1374246_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_038454751.1\|1374255_1374936_-	sodium:proton antiporter	NA	NA	NA	NA
WP_038454753.1\|1374932_1377122_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_058893480.1\|1377111_1377567_-	RDD family protein	NA	NA	NA	NA
WP_038454757.1\|1377563_1378811_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_058893481.1\|1379065_1379698_-	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_038454761.1\|1379694_1380168_-	DNA-deoxyinosine glycosylase	NA	NA	NA	NA
WP_038454763.1\|1380167_1381700_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	4.2e-16	29.5
WP_058893482.1\|1381873_1382326_+	hypothetical protein	NA	NA	NA	NA
WP_058893483.1\|1382315_1384127_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_058893484.1\|1384172_1384925_+	hypothetical protein	NA	NA	NA	NA
WP_058893485.1\|1384921_1387993_+	response regulator	A0A1V0SGX0	Hokovirus	2.2e-40	28.0
WP_038454772.1\|1387989_1388370_+	response regulator	NA	NA	NA	NA
WP_038454774.1\|1388358_1388763_-	hypothetical protein	NA	NA	NA	NA
WP_081867167.1\|1388860_1389376_+	ATP/GTP-binding protein	NA	NA	NA	NA
WP_058893486.1\|1389445_1390141_+	dUTPase	NA	NA	NA	NA
WP_058893487.1\|1390137_1390872_+	EI24 domain-containing protein	NA	NA	NA	NA
WP_058893488.1\|1390874_1392641_+	sodium:phosphate symporter	NA	NA	NA	NA
WP_038454784.1\|1392701_1392893_+	hypothetical protein	NA	NA	NA	NA
WP_058893489.1\|1393130_1393463_+	DUF485 domain-containing protein	NA	NA	NA	NA
WP_038454790.1\|1395104_1395515_-	acyl-CoA thioesterase	A0A292GK23	Xanthomonas_phage	8.1e-07	36.1
WP_058893490.1\|1395591_1396602_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_058893491.1\|1396717_1398538_+	invasion protein CiaB	NA	NA	NA	NA
WP_002850080.1\|1398645_1398948_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA
WP_058893492.1\|1399253_1399490_-	thioredoxin family protein	NA	NA	NA	NA
WP_058893493.1\|1399499_1400456_-	permease	NA	NA	NA	NA
WP_058893494.1\|1400583_1400898_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_038454800.1\|1400916_1401207_-	hypothetical protein	NA	NA	NA	NA
WP_058893495.1\|1401261_1402518_-	arsenic transporter	A0A2H4PQU3	Staphylococcus_phage	2.4e-102	47.7
WP_038455674.1\|1402600_1403482_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_038454804.1\|1403574_1404723_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_058893496.1\|1404947_1406324_+	sodium-dependent transporter	NA	NA	NA	NA
WP_058893497.1\|1406345_1408169_+	biotin/lipoyl-binding protein	NA	NA	NA	NA
WP_144242191.1\|1408311_1409886_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	4.2e-152	51.6
WP_058893498.1\|1409981_1411373_+	argininosuccinate lyase	NA	NA	NA	NA
WP_038454813.1\|1411360_1411630_-	metal/formaldehyde-sensitive transcriptional repressor	NA	NA	NA	NA
WP_038454815.1\|1411700_1412612_+	CDF family Co(II)/Ni(II) efflux transporter DmeF	NA	NA	NA	NA
WP_038454817.1\|1412693_1412924_+	ferrous iron transport protein A	NA	NA	NA	NA
WP_038454819.1\|1412920_1415032_+	ferrous iron transport protein B	NA	NA	NA	NA
WP_058893499.1\|1415283_1415718_-	lysozyme	A0A1L2CUV5	Pectobacterium_phage	1.4e-12	36.4
WP_058893500.1\|1415714_1416041_-	hypothetical protein	NA	NA	NA	NA
WP_058893501.1\|1416187_1416553_-	hypothetical protein	NA	NA	NA	NA
WP_058893502.1\|1416549_1416798_-	hypothetical protein	NA	NA	NA	NA
WP_058893503.1\|1416807_1417749_-	hypothetical protein	A0A088FRU7	Escherichia_phage	1.4e-17	27.2
WP_082663250.1\|1417742_1417940_-	hypothetical protein	NA	NA	NA	NA
WP_058893505.1\|1417929_1418301_-\|tail	phage tail protein	NA	NA	NA	NA
WP_058893506.1\|1418311_1418959_-\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	8.0e-09	32.4
WP_058893507.1\|1419136_1419565_-	hypothetical protein	NA	NA	NA	NA
WP_058893508.1\|1419568_1419886_-	hypothetical protein	NA	NA	NA	NA
WP_058893509.1\|1419878_1420151_-	hypothetical protein	NA	NA	NA	NA
WP_058893510.1\|1420147_1421890_-\|capsid	phage major capsid protein	A0A193GYA3	Enterobacter_phage	5.7e-94	36.1
WP_058893511.1\|1421879_1423322_-\|portal	phage portal protein	Q6R4V2	Vibrio_virus	8.1e-94	39.2
WP_058893512.1\|1423321_1423552_-	hypothetical protein	NA	NA	NA	NA
WP_058893513.1\|1423629_1425372_-\|tail	phage tail tape measure protein	A0A2K9VGW0	Faecalibacterium_phage	6.4e-77	40.0
WP_058893514.1\|1425403_1425616_+	hypothetical protein	NA	NA	NA	NA
WP_058893515.1\|1425700_1425904_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_058893516.1\|1425908_1426403_-	hypothetical protein	K4I1G5	Acidithiobacillus_phage	1.2e-07	25.6
WP_058893517.1\|1426402_1427530_-\|tail	phage tail protein	A7YGJ8	Campylobacter_phage	6.0e-52	32.8
WP_058893518.1\|1427626_1428661_-	hypothetical protein	NA	NA	NA	NA
WP_058893519.1\|1428745_1429330_-	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_058893520.1\|1429436_1429883_-	hypothetical protein	NA	NA	NA	NA
WP_156412523.1\|1429905_1430334_-	hypothetical protein	NA	NA	NA	NA
WP_058893522.1\|1430330_1431209_-\|tail	phage tail protein	A0A0A7RTP0	Clostridium_phage	9.5e-21	34.4
WP_058893523.1\|1431218_1431866_-\|tail	phage tail protein I	Q19UQ4	Mannheimia_phage	1.2e-17	36.6
WP_058893524.1\|1431834_1432929_-	hypothetical protein	D5LGZ3	Escherichia_phage	1.4e-21	36.7
WP_069435758.1\|1432921_1433206_-	hypothetical protein	A0A2H4JE52	uncultured_Caudovirales_phage	3.0e-08	46.4
WP_156412524.1\|1433271_1433442_-	hypothetical protein	NA	NA	NA	NA
WP_058893525.1\|1433441_1435205_-\|terminase	phage terminase large subunit family protein	A0A0C5ABH4	Bacteriophage	4.8e-149	48.4
WP_058893526.1\|1435201_1435861_-	hypothetical protein	NA	NA	NA	NA
WP_058893527.1\|1436241_1436760_-	hypothetical protein	NA	NA	NA	NA
WP_058893528.1\|1436759_1437824_-\|integrase	site-specific integrase	A0A067ZJC0	Vibrio_phage	1.2e-22	27.1
WP_058893529.1\|1437908_1438115_-	hypothetical protein	NA	NA	NA	NA
WP_058893530.1\|1438111_1438807_-	ATP-binding protein	NA	NA	NA	NA
WP_058893531.1\|1438810_1439575_-	helix-turn-helix domain-containing protein	R9TPU9	Vibrio_phage	7.3e-09	42.2
WP_156412525.1\|1439650_1439824_+	hypothetical protein	NA	NA	NA	NA
WP_058893532.1\|1439833_1440022_-	hypothetical protein	NA	NA	NA	NA
WP_058893533.1\|1440122_1440434_+	hypothetical protein	NA	NA	NA	NA
WP_058893534.1\|1440436_1440664_-	hypothetical protein	NA	NA	NA	NA
WP_058893535.1\|1440788_1441499_+	S24 family peptidase	NA	NA	NA	NA
WP_058893536.1\|1441500_1441746_-	DUF2442 domain-containing protein	NA	NA	NA	NA
1441719:1441734	attL	NA	NA	NA	NA
WP_058893537.1\|1441723_1441957_-	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_069435759.1\|1442026_1443475_-	DUF4041 domain-containing protein	X5JAC1	Clostridium_phage	5.0e-43	46.5
WP_058893539.1\|1443485_1443782_-	hypothetical protein	NA	NA	NA	NA
WP_058893540.1\|1444368_1444611_+	hypothetical protein	NA	NA	NA	NA
WP_058893541.1\|1444612_1444801_+	hypothetical protein	NA	NA	NA	NA
WP_058893542.1\|1444791_1444995_+	hypothetical protein	NA	NA	NA	NA
WP_058893543.1\|1445004_1445454_+	DUF736 family protein	NA	NA	NA	NA
WP_058893544.1\|1445464_1446016_+	hypothetical protein	A0A1B0XW37	Campylobacter_phage	1.2e-16	34.4
WP_058893545.1\|1446134_1446980_+	hypothetical protein	NA	NA	NA	NA
WP_058893546.1\|1446990_1447230_+	transcriptional regulator	M5A9C2	Nitratiruptor_phage	2.5e-08	42.1
WP_156412526.1\|1447791_1448031_+	transcriptional regulator	X2KQ78	Campylobacter_phage	1.9e-08	47.1
WP_058893548.1\|1448429_1449110_+	Rha family transcriptional regulator	X2KM03	Campylobacter_phage	1.1e-29	41.4
WP_058893769.1\|1449137_1449371_+	DUF3310 domain-containing protein	Q774Z7	Bordetella_phage	1.2e-15	59.0
WP_058893549.1\|1449380_1449587_+	hypothetical protein	NA	NA	NA	NA
WP_058893550.1\|1449576_1450743_-\|integrase	tyrosine-type recombinase/integrase	X2KXI6	Campylobacter_phage	6.9e-19	24.7
WP_038454820.1\|1451059_1453135_-	elongation factor G	E4ZFJ7	Streptococcus_phage	5.7e-64	27.8
1452091:1452106	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010995

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection