CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013748	Pseudarthrobacter sulfonivorans strain Ar51 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP013747	Pseudarthrobacter sulfonivorans strain Ar51 chromosome, complete genome	4 crisprs	csa3,DinG,cas3,DEDDh,PD-DExK,WYL,RT	0	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013747_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013747_1

744977-745078

Orphan

Consensus_repeat	Method
GCGAACGGGTTGTTACCCGGACGGGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013747_1

>merge|NZ_CP013747|1|744977-745078|CRISPRCasFinder
GCGAACGGGTTGTTACCCGGACGGGGAGCACGCTCTCCGTCGCCACCGCGGCCGCGGGGCATGCCCTGGGACGTGGCGAACGGGTTGTTACCCGGACGGGGA

>NZ_CP013747|1|1|744977-745078|CRISPRCasFinder
GCGAACGGGTTGTTACCCGGACGGGGA	GCACGCTCTCCGTCGCCACCGCGGCCGCGGGGCATGCCCTGGGACGTG
GCGAACGGGTTGTTACCCGGACGGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013747.1\|WP_058929496.1\|740725_741823_+\|ScyD/ScyE-family-protein	unknown	unknown	gnl\|CDD\|380207
NZ_CP013747.1\|WP_083510243.1\|737799_738783_-\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113
NZ_CP013747.1\|WP_058929500.1\|746268_747249_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_CP013747.1\|WP_058929506.1\|753279_755088_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NZ_CP013747.1\|WP_058929495.1\|740058_740544_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|238612
NZ_CP013747.1\|WP_058932718.1\|733620_734868_-\|kynureninase	unknown	unknown	gnl\|CDD\|226363
NZ_CP013747.1\|WP_058929499.1\|745721_746099_-\|YlxR-family-protein	unknown	unknown	gnl\|CDD\|377288
NZ_CP013747.1\|WP_058929504.1\|749894_750926_+\|aminoglycoside-resistance-protein	unknown	unknown	gnl\|CDD\|309685
NZ_CP013747.1\|WP_058929491.1\|735771_736755_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP013747.1\|WP_056348486.1\|756295_757039_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|272861
NZ_CP013747.1\|WP_058929494.1\|738870_740043_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|223513
NZ_CP013747.1\|WP_058929502.1\|747969_749118_+\|DUF4439-domain-containing-protein	unknown	unknown	gnl\|CDD\|373114
NZ_CP013747.1\|WP_058929493.1\|737443_737797_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013747.1\|WP_099093421.1\|736971_737424_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|130543
NZ_CP013747.1\|WP_058929505.1\|752475_753270_-\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|182593
NZ_CP013747.1\|WP_058929490.1\|734876_735731_-\|tryptophan-2,3-dioxygenase	unknown	unknown	gnl\|CDD\|188272
NZ_CP013747.1\|WP_058929507.1\|755498_756287_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP013747.1\|WP_058929497.1\|741897_742407_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP013747.1\|WP_058929503.1\|749169_749898_+\|VIT-family-protein	unknown	unknown	gnl\|CDD\|153123
NZ_CP013747.1\|WP_058929501.1\|747248_747863_-\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627

Protein	Function_ID	Function_description	E-value
NZ_CP013747.1\|WP_058929496.1\|740725_741823_+\|ScyD/ScyE-family-protein	gnl\|CDD\|380207	NF033206, ScyE_fam, ScyD/ScyE family protein. This family includes ScyE, a protein involved in scytomenin biosynthesis and export, and its paralog ScyD. Some members of the family contain a C-terminal PEP-CTERM domain that predictions anchoring to the outer membrane.	1.48271e-74
NZ_CP013747.1\|WP_083510243.1\|737799_738783_-\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	1.60986e-165
NZ_CP013747.1\|WP_058929500.1\|746268_747249_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	6.18592e-179
NZ_CP013747.1\|WP_058929506.1\|753279_755088_-\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NZ_CP013747.1\|WP_058929495.1\|740058_740544_-\|nucleoside-deaminase	gnl\|CDD\|238612	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.	1.13112e-40
NZ_CP013747.1\|WP_058932718.1\|733620_734868_-\|kynureninase	gnl\|CDD\|226363	COG3844, COG3844, Kynureninase [Amino acid transport and metabolism].	1.93927e-110
NZ_CP013747.1\|WP_058929499.1\|745721_746099_-\|YlxR-family-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	2.87158e-24
NZ_CP013747.1\|WP_058929504.1\|749894_750926_+\|aminoglycoside-resistance-protein	gnl\|CDD\|309685	pfam04655, APH_6_hur, Aminoglycoside/hydroxyurea antibiotic resistance kinase. The aminoglycoside phosphotransferases achieve inactivation of their antibiotic substrates by phosphorylation utilising ATP. Likewise hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.	1.90323e-26
NZ_CP013747.1\|WP_058929491.1\|735771_736755_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	2.16185e-122
NZ_CP013747.1\|WP_056348486.1\|756295_757039_+\|ABC-transporter-permease	gnl\|CDD\|272861	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family. The seed members for this model are a paralogous family of Mycobacterium tuberculosis. Nearly all proteins scoring above the noise cutoff are from high-GC Gram-positive organisms. The members of this paralogous family of efflux proteins are all found in operons with ATP-binding chain partners. They are related to a putative daunorubicin resistance efflux protein of Streptomyces peucetius. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.	2.08113e-31
NZ_CP013747.1\|WP_058929494.1\|738870_740043_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|223513	COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism].	1.09851e-117
NZ_CP013747.1\|WP_058929502.1\|747969_749118_+\|DUF4439-domain-containing-protein	gnl\|CDD\|373114	pfam14530, DUF4439, Domain of unknown function (DUF4439). This domain has a ferritin-like fold.	3.29824e-12
NZ_CP013747.1\|WP_099093421.1\|736971_737424_-\|hypothetical-protein	gnl\|CDD\|130543	TIGR01478, Plasmodium_falciparum, variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.	0.00229855
NZ_CP013747.1\|WP_058929505.1\|752475_753270_-\|TSUP-family-transporter	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	9.62755e-39
NZ_CP013747.1\|WP_058929490.1\|734876_735731_-\|tryptophan-2,3-dioxygenase	gnl\|CDD\|188272	TIGR03036, trp_2_3_diox, tryptophan 2,3-dioxygenase. Members of this family are tryptophan 2,3-dioxygenase, as confirmed by several experimental characterizations, and by conserved operon structure for many of the other members. This enzyme represents the first of a two-step degradation to L-kynurenine, and a three-step pathway (via kynurenine) to anthranilate plus alanine. [Energy metabolism, Amino acids and amines].	1.5118e-156
NZ_CP013747.1\|WP_058929507.1\|755498_756287_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	4.51267e-76
NZ_CP013747.1\|WP_058929497.1\|741897_742407_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	2.15566e-45
NZ_CP013747.1\|WP_058929503.1\|749169_749898_+\|VIT-family-protein	gnl\|CDD\|153123	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	3.84581e-92
NZ_CP013747.1\|WP_058929501.1\|747248_747863_-\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	6.50861e-32

>NZ_CP013747.1|WP_058929497.1|741897_742407_-|30S-ribosome-binding-factor-RbfA
MADPARAAKLAQRIKVVVAEALGRKVKDPRLEGITVTDARVTNDLQHATIYYTVFGDQAVQADAAKGLEKAKGVLRQEVGRNVTVRLTPTLEFVADQIPVVASNLEDLLRAAKKRDAEVAALAENAKHAGDADPYKSDIPADVEIDEDDFDEEDIDLTDDEDLDEDANK
>NZ_CP013747.1|WP_058929496.1|740725_741823_+|ScyD/ScyE-family-protein
MNKKFPIVACLAAAAMIIPVAPATATQKPSGPETLAEHLMTPLSLALGPGKSVLVTQNFAGTLDRVEDDGQTTNVYTNAGWDVGGVETRGTTTFFVESVGGGGGDPTALAGYLKSIDRRGEVRTIVDLATYERQNNPDGFQDYGFGSDVTDECLAQITAPFPPAQYSGAVDSHPYATAVHGNTVFVADAGMNAILKVNAATGETTTLAVLPPRPAEATAEAAAAAGFPSCVVGHNYAFEPVPTDVEIGPDGWLYVSSLPGGPEDPSLGHRGAIFRVNPWTGAIHLWADEILSPTGIAVSRTGDVYAASMFGNEIVRIDAWTREQSQFLAVDGPAAVELRGKTLYATAGFSFADLTAGTVLKASIR
>NZ_CP013747.1|WP_058929495.1|740058_740544_-|nucleoside-deaminase
MTQASDNHEATRYLEQAIELAVRNVSDGGGPFGALVVTPDGRVHEGTNRVTRDNDPTAHAEVVAIRAAAAAGATFDLSGAVLYTSCEPCPLCLSAALWARIDRVYFAADRHGAAAAGFDDAVFYEYFNGTRPELLPVAQTAIPASDAPFDAWRRNTKRKDY
>NZ_CP013747.1|WP_058929494.1|738870_740043_+|pyridoxal-phosphate-dependent-aminotransferase
MASMPELAAHARDVPVNQIREITEAAWHTPGAIVLSIGEPGFALPRHILEAGMACLDRDETNYTPNAGIPALREAFATRFRERAGLNTSLGAERVYVVDGAQQGLHFAMSLLLSPGDEILIPNPGYPTFAMTSRLLNAVPVGYPLYPEHDFQPRIQDIEALITDRTRVLILNSPSNPLGAVLGADLTRQLVDLARKRDLWIISDECYEAFTYDVPHVSPARFDSDVPGEARVFTSLTLSKTYGLTGLRIGALVCPPGLEQKMNNVMEAIVSCVASPSQYAALAALTGPQDYVRHAHEHYRANRDAASAVLEAKGIPYLSAQGAFYLWANVSHVSDGDVRSWARRFLADSGVALAPGTAFGSIGEGWVRIALCGTRNDLVEGVGRLPKNQD
>NZ_CP013747.1|WP_083510243.1|737799_738783_-|tRNA-pseudouridine(55)-synthase-TruB
MLSGLVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVVGINKATRLLTYIVGTSKTYTATIRLGQSTITDDAEGDVIAAVSAAAVADEAIHDGVAALTGEIQQVPSSVSAIKVNGERAYARVRSGEEVKLAARPVTIHRFEVHAINREAGVDVVDIDVTVECSSGTYIRALARDLGDGLGVGGHLTALRRTHVGPYSLDQARTLEQLAEELNVLEMSQAARALMPNRELTAEEATEISFGRRIAAGSEAGDPAAATTEHPAAAFAPDGSLVALLADSGNFAKPVLVFAPGNGASEKTAPRKTAPEDVVPEDAAGGDA
>NZ_CP013747.1|WP_058929493.1|737443_737797_-|hypothetical-protein
MDAYFYIIMVVGLLSSGICLGAGILKKAPNDLTILSVAAVELALLVYLVGSIVRVIAGEPIAGEAWEFWGYLATAMLLPPAAVYWSILERTRWSNFVLAAVGVTALVMAARMNQIWY
>NZ_CP013747.1|WP_099093421.1|736971_737424_-|hypothetical-protein
MKAPRSEADRAKAGAKAGVKDTRNTGPGRLLIAVYAVFAISATARAGYQILTKFSEAPLAYLLSAFAALVYVVATVSLAKPGRTWFKISLAAVLVELVGVLVVGALSVFDSVAFPHETVWSLFGRGYAFIPLLLPVLGLVWLYRRRPNQQ
>NZ_CP013747.1|WP_058929491.1|735771_736755_-|bifunctional-riboflavin-kinase/FAD-synthetase
MVYIWNDPSEVPADFGPSVVTFGNFDGVHRGHQQVLSELIRSARFNGTKAVAVTFDPHPALIHRPESAPEMIMGLQDKLVALGELGLDAILVMKYSLNLASLTPEEFVGQVLVDSLHASHVVIGHDSRFGRGNSGDLDTMKQLGEKFDFDVQVISEFGSEGYPLHNDGGTDRRCSSTWVREALQEGDVATAAAVLGRPHRMRGEVVHGAARGRVLGFPTANLAYEATGFIPADGIYAGWLVDQAGTRWPAAISVGSNPTFDGVSRQVEAHVIDRPHEAVEDFDLYGQTVVVEFVARLRGMVAYRGPEALVDQMRLDVIQAHDLLVRR
>NZ_CP013747.1|WP_058929490.1|734876_735731_-|tryptophan-2,3-dioxygenase
MAVEKNTRKLDKGIVRDFSSRMSYASYLQLPTLLSAQQPVSTPEHHDELLFIIQHQTTELWLKLVLHELRSAAAWLRADDLGSALKGIARVKHIQKTLTEQWSVLATLTPTEYSQFRGFLGNSSGFQSSQYRAVEFILGNKNRKMLPVFESDPDAHAMLEDVLKAPSIYDEFLAYLARQGFDVPQSVLERDVTRAHEFCPELVPLFKHIYENAAANWGAYEACEELVDLEDNFQLWRFRHLRTVQRTIGMKSGTGGSSGAAFLQKALELTFFPELFAVRTEIGQ
>NZ_CP013747.1|WP_058932718.1|733620_734868_-|kynureninase
MDANMENHDAGALLEQAAQLDAGDPLARYRSLFIGTDTDLSYLDGNSLGRPLKRTQQDISTFIGEGWGGRLIRGWDEEWLDLPQTIGDQLGRAVLGAAPGQTVIADSTTVVLYKLIRAALATVADPVRTEIVLDTDNFPTDRYLVEGIAREEGLTLRWIEADPASGVTVEQVRHATGPATAVVLLSHVAYRSGFLADLPGITEVAHSAGALVVWDLCHSAGSVELELDGANVDFAAGCTYKYLNGGPGSPAFAYVNRRHLPGLKQPIWGWMGRKDAFEMAAGYEPAPGIRSFLSGTPAIFGMLAMRGTLDLIEEAGMAAIREKSLKLTAYAVQLFEAWLEPAGVELASPREPELRGSHITLDHPAFRNVTAALWEQDVIPDFRAPHGIRVGLSPLSTSFAELFRGMAAIRDQLRR
>NZ_CP013747.1|WP_058929499.1|745721_746099_-|YlxR-family-protein
MNVRKILTVAEVLHTEDQPQRTCIGCRKQAPRSELLRLVAEGSGSTAVLVDERRRMAGRGAWLHPSEACLALAVKRRAFGRALNGATGSTAVERRIMAGKQDASPLQVPLVAAAKTVQPESGSEN
>NZ_CP013747.1|WP_058929500.1|746268_747249_-|transcription-termination/antitermination-protein-NusA
MDIDMSALRLLEREREIPLDLLIPTIEQALLVAYHKSPGAFEKARAELDRKSGHVTIWAVEIDDDGAPIGEFEDTPAGFGRIAASTARQIILQRLRDVEDDAILGEFKGREGELVAGLIQQGNNPHMIQVNLGSVEALLPPPEQVPGEKYIHGNRLRAIVIDVHRGTKGPSVTLSRSHPGLVRKLFELEVPEIADRSVEIVALAREAGHRTKIAVKAHTQGINAKGACIGEMGSRVRAVMTELNDEKIDIVDFSEDPATFIASALSPSRVNSVTIVDEATRSARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIVSDAAPARES
>NZ_CP013747.1|WP_058929501.1|747248_747863_-|ribosome-maturation-factor-RimP
MSNAEATTSSDATGTGTAEAAPANNPEAVRLRALLEPAVQANRLYLEDVSILAGSHRVVHVVVDLPQEETGGVNLDVIADISRVLSDVLDNDPADDGRPYDLEVSSPGVARPLTEVRHWHRARGRMVKVNVIQGENVTGRVQSVDDSGVTIIPEIAVKKGMKPKQGEPQILPFDRIRNGKVEIEFSHLEEAGLEPEHNGPSEEA
>NZ_CP013747.1|WP_058929502.1|747969_749118_+|DUF4439-domain-containing-protein
MKDDTQKSGRRRRYFQYAVFALAALLVVSLGLVLIPREPSPPAAPPFSEQARASAFADSLTLRAAGLDLEGTAGATAPAPQAAALARIVTLLTVQARALMLPADAADPALDRAATAPVPAPSTALATVTPPSTTADFAAALQASGAQRLHDAETADGGMARLLAGTGTAQLLAAEDLASATGIALAALPGSGPSSPASPAAVASFTASRAASCASEAAASTGVNLGSALSLAVEGELELVYAYQAALTRLNSGSAGPASNFLAQHTALRGEAEAMGRSRCAAVPSRQPGYVLSQAFLADPAAGLGTLEAGTLPVLGDVVALSDGRDRRWALSALQSAARRTVYWGASPGPVPGVVLDEALLPPLPEPVSTPGTSTTSTPGNS
>NZ_CP013747.1|WP_058929503.1|749169_749898_+|VIT-family-protein
MDSAGAPALHENEPHQNDVAQRLNWLRAGVLGANDGIVSVAAIVVGVAGVTTQSGPILVAGMAGLVGGAVSMALGEYVSVSSQKDSQQALIEKERLELQEQPEEELEELAAIYQGKGLSVDTALAVARELTAHDALGAHLSAELNIDETDIVSPWNAAFASAIAFVTGAILPMAAILLPPESIRVPLTFAAVLAALAATGALGAWIGGGSKLRAAARVVAGGALALAATFTIGNLLGASGVL
>NZ_CP013747.1|WP_058929504.1|749894_750926_+|aminoglycoside-resistance-protein
MTVQIGVPIPPALSGRYSHSSAGRAWLSSLPGLVQGRLEHWELAVDLEDGALPWHGHGGVVVPVRRTDGTPAALKIAFPHDEARVERHALALWGGSGAVRLLESDAGTCAMLLERLNADSSLQTLPLDQAAVAWGSTMRQLGLVPDGRPQWQEFDHIAGRAEQWSDDLPADWEQQGRPFPRWLLEAALEVCQTRGAVGRRSGRDVLVHTDLHFLNILARPHTISGGLPGEAFVAIDPQPMIGEPEFAVAPLLWNRLGDLPRSDPAGGLRRRCQDFSAAAGLDAEAARQWAVAREVENALCYASLPRHQGDLARSLWVASTLAGRTLDGLPSAHALPEPGQGDS
>NZ_CP013747.1|WP_058929505.1|752475_753270_-|TSUP-family-transporter
MISGFESIQLTTIILIVVAGFAAGWVDAVVGGGGLLQLPAMLLVPGITPVQALATNKMGSIFGTATSAVTFYGRVKPDLRTAVPMAVIALAGSFAGAVLAATLPASVFKAVIVVALVVVALFTALKPNVGDLTVLRHDGRRHYVVACMIGAVIGFYDGLIGPGTGSFLIIALVSAMGYAFLEASAKAKIVNMATNAGALLFFLPHGSILWGVGLLLGLANMAGGYLGARTAVKQGSRFIRVVFLLVVGALIIKLGVDVWQENFA
>NZ_CP013747.1|WP_058929506.1|753279_755088_-|proline--tRNA-ligase
MVTRMSKLFLRTLREDPVDAEVASHRLLVRAGYIRRAAPGIYTWLPLGLSVLRKVEAVVREEMDAIGAQEVHFPALLPREPYEVTNRWTEYGEGLFRLQDRKGADYLLAPTHEEMFTLLVKDLYSSYKDLPLSLYQIQNKYRDEARPRAGLLRGREFIMKDSYSFDVDDAGLDASYAAHRGAYLKIFARLGLEVIPVAATAGAMGGSKSEEFLHPTEIGEDTFVRSAGGYAANVEAVTTVVPADIDFSNAPAAEVLDTPNTPTIDTLVAASNELAPRSEADGGAWTGADTLKNVVLAVTLPTGERQLVVIGLPGDRGVDLKRVEANIGSFLPIGGEITLEAANDDDLKKQPLIVKGYLGPGLTLDQPLLGSESSTKLLYLVDPRVVSGTAWITGANEAGKHVYGLVAGRDFTWNGVIECTDVREGDPAPDGSGPLETARGIEMGHIFQLGRKYAEALELKVLDQNGKQVVVTMGSYGVGVTRAVAALAESNHDDKGLVWPRAVAPADVHVVAVGRGEEIFATAEQLALELEAAGLDVIYDDRPKVSPGVKFGDAELVGVPTILAVGRGLVDGVVEIKDRRSGEAENVAVDKAVDYVVTAVRS
>NZ_CP013747.1|WP_058929507.1|755498_756287_+|ABC-transporter-ATP-binding-protein
MSHSAATAPAVTEASIAVAATTLHVTRGKVPVLRGLDFAIQAGEITGLLGPSGSGKTTLMRAIMGVQVLTSGSVQVLGLPAGHPGLRHRVGYVTQSPSVYPDLTVEANVRYFGAMHRKGRAEAAEAIAAVGLEPQARQKTGDLSGGQLSRVSLACALVARPSLLVLDEPTVGLDPVLRADLWDRFRSMAESGTTLLVSSHVMEEASHCGSLLLLREGKLLAQLTPAELSQRGHSADLEKAFLHIIQDAAKVPSGSPERTVRS
>NZ_CP013747.1|WP_056348486.1|756295_757039_+|ABC-transporter-permease
MLLATTRRVLDQLRHDHRSIALILVVPALLLTAVYFLYENETLPPGVPRTFDRVGLMMLAIFPFVVMFLVTSITMLRERTSGTLERLLTTPIHKADLLFGYGLAFSIMAALQSLVATAVAYWIFGLDIQGSPGLVVMIAVINAVLGVALGLLCSAFARTEFQAVQFMPVVVVPQILLCGLFVARERMNEALEAVSNVLPLTFSVDALQEIAANTEPTDQLWMDAGVIVAIVLAVLVLASLTLRRRTA

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Crispr_ID: NZ_CP013747_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013747_2

777176-777261

Orphan

Consensus_repeat	Method
GCGTCGGTTTCGACAGGCTCAACCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013747_2

>merge|NZ_CP013747|2|777176-777261|CRISPRCasFinder
GCGTCGGTTTCGACAGGCTCAACCACAGGGTTTTCGGGTCTGACAGGCTCGGTTTCGACGAGCGCGGTTTCGACAGGCTCAACCAC

>NZ_CP013747|2|2|777176-777261|CRISPRCasFinder
GCGTCGGTTTCGACAGGCTCAACCAC	AGGGTTTTCGGGTCTGACAGGCTCGGTTTCGACG
AGCGCGGTTTCGACAGGCTCAACCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013747.1\|WP_058929530.1\|784772_785495_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP013747.1\|WP_058929520.1\|770112_771276_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
NZ_CP013747.1\|WP_058932721.1\|775415_776036_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP013747.1\|WP_058929531.1\|785491_785842_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377315
NZ_CP013747.1\|WP_058929522.1\|773508_775116_-\|methylcrotonoyl-CoA-carboxylase	unknown	unknown	gnl\|CDD\|178415
NZ_CP013747.1\|WP_058929525.1\|778696_779827_-\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|213783
NZ_CP013747.1\|WP_083510541.1\|780797_781253_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013747.1\|WP_058932722.1\|783535_784726_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP013747.1\|WP_058932720.1\|764762_765506_-\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|376667
NZ_CP013747.1\|WP_058929515.1\|765555_767016_+\|lipase-maturation-factor-family-protein	unknown	unknown	gnl\|CDD\|369070
NZ_CP013747.1\|WP_058929526.1\|780001_780475_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP013747.1\|WP_058929521.1\|771278_773501_-\|biotin/lipoyl-binding-protein	unknown	unknown	gnl\|CDD\|227111
NZ_CP013747.1\|WP_058929532.1\|785849_787316_+\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|271374
NZ_CP013747.1\|WP_058929517.1\|767868_768486_-\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239535
NZ_CP013747.1\|WP_058929529.1\|782976_783357_-\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|377315
NZ_CP013747.1\|WP_058929518.1\|768482_769250_-\|CoA-transferase-subunit-B	unknown	unknown	gnl\|CDD\|188219
NZ_CP013747.1\|WP_058929524.1\|777686_778697_-\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NZ_CP013747.1\|WP_058929528.1\|781363_782980_-\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|236495
NZ_CP013747.1\|WP_058929516.1\|767032_767872_-\|CoA-ester-lyase	unknown	unknown	gnl\|CDD\|225184
NZ_CP013747.1\|WP_058929519.1\|769252_770047_-\|CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|224702

Protein	Function_ID	Function_description	E-value
NZ_CP013747.1\|WP_058929530.1\|784772_785495_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	3.15711e-47
NZ_CP013747.1\|WP_058929520.1\|770112_771276_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	3.26997e-145
NZ_CP013747.1\|WP_058932721.1\|775415_776036_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	2.17137e-12
NZ_CP013747.1\|WP_058929531.1\|785491_785842_+\|hypothetical-protein	gnl\|CDD\|377315	pfam04341, DUF485, Protein of unknown function, DUF485. This family includes several putative integral membrane proteins.	0.00410714
NZ_CP013747.1\|WP_058929522.1\|773508_775116_-\|methylcrotonoyl-CoA-carboxylase	gnl\|CDD\|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0
NZ_CP013747.1\|WP_058929525.1\|778696_779827_-\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	gnl\|CDD\|213783	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase].	3.76912e-177
NZ_CP013747.1\|WP_058932722.1\|783535_784726_+\|histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	5.4448e-65
NZ_CP013747.1\|WP_058932720.1\|764762_765506_-\|TSUP-family-transporter	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	4.18058e-09
NZ_CP013747.1\|WP_058929515.1\|765555_767016_+\|lipase-maturation-factor-family-protein	gnl\|CDD\|369070	pfam06762, LMF1, Lipase maturation factor. This family of transmembrane proteins includes the lipase maturation factor, LMF1. Lipoprotein lipase and hepatic lipase require LMF1 to fold into their active states. The precise role of LMF1 in lipase folding has yet to be determined.	7.84332e-127
NZ_CP013747.1\|WP_058929526.1\|780001_780475_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.18442e-30
NZ_CP013747.1\|WP_058929521.1\|771278_773501_-\|biotin/lipoyl-binding-protein	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NZ_CP013747.1\|WP_058929532.1\|785849_787316_+\|cation-acetate-symporter	gnl\|CDD\|271374	cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	8.49917e-135
NZ_CP013747.1\|WP_058929517.1\|767868_768486_-\|MaoC-family-dehydratase	gnl\|CDD\|239535	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.	7.88607e-68
NZ_CP013747.1\|WP_058929529.1\|782976_783357_-\|DUF485-domain-containing-protein	gnl\|CDD\|377315	pfam04341, DUF485, Protein of unknown function, DUF485. This family includes several putative integral membrane proteins.	7.42121e-38
NZ_CP013747.1\|WP_058929518.1\|768482_769250_-\|CoA-transferase-subunit-B	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	2.43227e-123
NZ_CP013747.1\|WP_058929524.1\|777686_778697_-\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	8.27141e-154
NZ_CP013747.1\|WP_058929528.1\|781363_782980_-\|cation-acetate-symporter	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_CP013747.1\|WP_058929516.1\|767032_767872_-\|CoA-ester-lyase	gnl\|CDD\|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	1.22545e-62
NZ_CP013747.1\|WP_058929519.1\|769252_770047_-\|CoA-transferase-subunit-A	gnl\|CDD\|224702	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism].	6.13255e-107

>NZ_CP013747.1|WP_058932721.1|775415_776036_+|TetR/AcrR-family-transcriptional-regulator
MAHAAPGTPRSQAKENRRQALLTAAAALFALHGFNRVSLEDLGAAAGVSGPAVYRHFQGKQAVLGDLLLTVSRELLDGGLRVISETKDPMAALRRLVGFQVEFALGKPDVIRVQDRDFSNLSQKDQSEVRTLQRNYVEIWVEVLALLHPGTDAVELRMRAHATFGLINSTPHSVRNHGRKIAPKTARPLLESMALAALTVNVPPAP
>NZ_CP013747.1|WP_058929522.1|773508_775116_-|methylcrotonoyl-CoA-carboxylase
METLASRLDAASEAFAANNAAQLALAAELRTRLAEAALGGPEKSRERHVGRGKLLPRERIDRLLDDGSPFLEIAPLAANGMYNNDSPGAGVIAGIGLVHGRQVLVISNDATVKGGTYYPMTVKKHLRAQEIALENRLPCIYLVDSGGAFLPKQDEVFPDKEHFGRIFFNQAKMSAAKIPQIASVMGSCTAGGAYVPAMSDETVIVRNQGTIFLGGPPLVKAAIGEIVTAEELGGGDVHSKISGVTDHLAENDEHALQMVRDIVSTLPRPAAPAWDVDTVVEPLADPAELYGAVPTDVNAQYDVHEVIARLVDGSRFHEFKKEYGTTLVTGFARLHGHPVGIVANNGVLFSESSLKGAHFIELCDQRGIPLIFLQNISGFMVGRDSEQGGIAKNGAKMVTAVATARVPKLTVVIGGSFGAGNYSMCGRAYSPRFLWMWPASRISVMGGNQASGVLATVKRDQYEARGEEWSAEDEEAFKAPIKQQYEDQGSPYYSTARLWDDGVIDPADTRTVLGLALDVVSRTPLPETSFGLFRM
>NZ_CP013747.1|WP_058929521.1|771278_773501_-|biotin/lipoyl-binding-protein
MTVSMPAVPSAIRQKPLFSTVLVANRGEIACRVIRTLRALGIRSVAVYSDADAGARHVREADTAVRIGPAAAGESYLKIEAILQACRDTGAEAVHPGYGFLSENVDFARALEAAGITFIGPGVESLNVMGDKIRSKNHVAGYGVPVVPGIAEPGMTDAQLMEAAPAVGFPLLIKPSAGGGGKGMHIVERHEDLEATLATARRVAASAFGDDTLFLERLVRTPRHIEVQVLADNHGNVIHLGERECSLQRRHQKVIEEAPSPLLESLHDGGATRARIGEAACQAARSVHYSGAGTVEFLVSDEAPDEFFFMEMNTRLQVEHPVTEMVTGVDLVEWQVRIAAGEELTVRQADVELNGHAAEARVYAEIPERNFMPSTGTVLLLDEMPDHGAGMIRVDSALLEGLEISSSYDPMISKVIAWGPDRTVALDTLDAALAGYTALGIDTNVEYLRLLINDDDVRAGHLDTGLIERKMPDFAFRRIDDAELVAAALYAVVSGEQDITGTPPGPWQASNGWRIGAPAPRRISLGTPDGGIATVSVTGRVAAGPVQVCVGDGQWRTASLRLPGRGSLVLTLDGEPTDYSLAPADAGPVNLTRDNLPSGVPAELFLGNGGWSCRLEPLTRESRLVRVLAAVEREEGTADPEVRSPMPGTVVSVAVSNGDTVEAGQVLLSVEAMKMEHQLVAEVAGTVHISIKAGQPVKADQVLATIHPSTTDSDADSLQDSNTESNKDSNKDSNNTGKGA
>NZ_CP013747.1|WP_058929520.1|770112_771276_-|acyl-CoA-dehydrogenase
MADFELSEEYQDLSDTVRDFADNVVAPVSAKHDEEHSFPYEVVSQMADMGLFGLPFPEEHGGMGGDYFALALALEQLGRVDQSVAITLEAGVSLGAMPVYRFGTEAQKEEWLPLLASGKALAGFGLTEPEAGSDAGGTKTHAHRENGDWVINGNKEFITNSGTDITRLVTVTAVTGQKERKDGSLKKQISTILVPTNTAGFRAEKAYNKVGWNASDTHPLTLKDVRVPEANLLGAEGRGYANFLSILDEGRIAIAALATGAAQGCVDLSVKYAKERSAFGHHIGKYQAISFKIARMQARAHTARLAYYDAASRMLAGKPFKTQAAIAKMVAGEAAMDNARDATQVFGGYGFINEFTVARHYRDSKILEVGEGTTEVQLMLIARELGL
>NZ_CP013747.1|WP_058929519.1|769252_770047_-|CoA-transferase-subunit-A
MINKVVASAEEAIADIPDGASLAVGGFGLCGIPVALIDALHRHGTKDLETVSNNCGVDDWGLGVLLRDGRIRRTVSSYVGENKEFARQYLSGELEVVLTPQGTLAEKLRAGGAGIPAFYTKAGVGTQVSDGGLPQKYDAHGGIAIASSPKEVRTFHDVDYVLEESLTPDYGLVHAWKGDRHGNLVFHATAMNFNPLCAMAGKITIAEVEELVEPGELDPEHVHTPGIFVQRVVVVPAGEKRIEKRTVALARAAGTESATEQAGA
>NZ_CP013747.1|WP_058929518.1|768482_769250_-|CoA-transferase-subunit-B
MESNSTQGAPPRPEAVRPEYRRATVGHPEGTNPEAKGWTRNELAARVARELSNGQYVNLGIGMPTLIPNYIPASVEVVLHSENGILGVGPYPSEDAVDPDLINAGKETVTVNKGAAFFDSASSFGMIRGGHVDVAVLGAMEVAQNGDLANWMIPGKMVKGMGGAMDLVFGAKKVIVMMEHVDRNGNPKIVEHCSLPLTGKACVDRIITDLAVIDVVTEGGRSRLVLRELAPNVSVEDVAAATGAELFEEDQELTV
>NZ_CP013747.1|WP_058929517.1|767868_768486_-|MaoC-family-dehydratase
MSGASAGSTPDSPGANTAAPRVIEQRGLYFDELEEGVVYAHRPGRTVTEADNVLFTTLTMNTQALHLDAAWSAGQPFGQRLVNSMFTLSTLVGQSVSQLTQGTIIAQLGLTDVSFPHPLYHGDTLYTETVITGKRLSGSRPGQGIVTMQHTGRNQDGTVVALATRSCLMWTRAAHVAQSSGQQVQPEAGAEKGSVPGPEKRTMSV
>NZ_CP013747.1|WP_058929516.1|767032_767872_-|CoA-ester-lyase
MTFVMGPALLFCPADRPERFPKAAQRADAVIVDLEDAVAPADKQRARGAILAQLGAAGDGPELDPSRTIIRINPAGTDEFEKDLHCLAHTPYRTVMLAKAESAAQLEALADYHVIALCETAVGVLNAPAIAAAPNVVALMWGAEDLLASLSGTSSRADDGGYRAVALHARSAVLLAARAFGKEAVDAVYVNIPDLDGLALEAADAAASGFGSKACIHPTQAPVVRGAYAPSEADVAAATELLQVAAVAGSGVFQHGGKMIDGPILKHAEATIRRAGIHS
>NZ_CP013747.1|WP_058929515.1|765555_767016_+|lipase-maturation-factor-family-protein
MDWVSWFDAPEYGFARQVLQRGVAALFFVAFLSSLNQFPALLGERGLLPVPDYLEGFSARRRPTLFRWRYSDRLLRGVCLTGLAISALLVAGIPQLGPPWVPLIAFLALWLLYMSIVNVGQTFYGFGWEMLLLEAGFTVAFLGSDQTEPPRTILLLLAWLVFRLEFGAGMIKIRGGREWRDLTALYYHHETQPMPGPLSRQAHLLPKPFHRLEVLGNHFAQLVVPFFIFAPQPLASAAAGIIIFTQLWLVASGNFAWLNWMAIVLAFAAVSDPVAHAVLPFLPLDGDPEEGSNPPYWLAITLVATMLLVVLSYWPVRNLLSKGQLMNASFNRWQLVNTYGAFGTVTKHRVEIVVEGTLDEEPEDSADWREYAFKGKPGDLRRLPRQWAPYHLRLDWLMWFLPLRTVHEEWFYAFLTKLLEADQRTLRLLRADPFDGDPPRWVRVNSYLYRFATRAEFRETGERWVRMPLYEAIPPLSLGGSRRRRR
>NZ_CP013747.1|WP_058932720.1|764762_765506_-|TSUP-family-transporter
MFALVLIAVVAGALAQRLAGLGFGLLVSPVLVVLLGPFDGVMIINLCGAASSLLILSRVWRHVEWKRYFGLALAALAGVLPGAWLASNVAEAPLEICIGILLIIALLASQRLTRSSWRASGPVPMVSLGFTSGLMNAAAGVGGPAITAYAIATRWEQKSFGATLQPYFVTTGLSSLVIKYVLSGGHVPGLDGWQWLSILAAMVAGIIAGDLLSGKVKPAAVRRIVVAIAYIGAVSTLTKGFIELAAG
>NZ_CP013747.1|WP_058929524.1|777686_778697_-|alpha-ketoacid-dehydrogenase-subunit-beta
MTQMTFARAINSGLRKSLENDPKVILMGEDIGTLGGVFRVTDGLQKDFGTHRVVDTPLAESAIMGTAVGLAYRGYRPVVEIQFDGFIYPAFDQIVSQVAKLHYRTQGAVKMPITIRVPFGGGIGSPEHHSESPEAYFTHTSGLRVVSVSNPQDAHTVIQQAILSDDPVLYFEPKRRYHDKGEVDEGIDPRTALPMDSARVVTEGTDVTLVAYGPLVKTAKDAATAAADEGISIEVIDLRSLAPVDYATVEASVRKTGRLVVTHEAGQSGGLGAEVAASITERCFYHLETAPVRITGFDIPYPYSKLEMHHLPGLDRILDGVDRALGRPNSLSGLEG
>NZ_CP013747.1|WP_058929525.1|778696_779827_-|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha
MRRLRAIVSTDRNLIQLVTPAGERISHPEFDPWVKDIGDEQLCSLYEDLTVIRRIDVEATALQRQGELGLWPPLLGQEAAQVGSGRALRDDDFVFSSYRENGVAYCRGVDLTDITRVWRGTASSGWDPYSVNMATPQIIIGAQTLHATGYAMGIQNDGADSVAVTYFGDGATSEGDVNEAMVFAASFQAPVVFFCSNNHWAISEPVRLQSHIQIADRATGFGIPSLRVDGNDVLAVMAATRVALDRARHGGGPTFIEAVTYRMGPHTTADDPTRYRDANELEDWAAKDPILRIKALLERKGLLTDQVQQHVHDKAESVAREIRSGCIGMPDPEPMDIFKHVYSEPNSWLDRQQDHYARYLASFGDPAGATSEEGAR
>NZ_CP013747.1|WP_058929526.1|780001_780475_+|Lrp/AsnC-family-transcriptional-regulator
MQALDGTDTRLLSALARDPRRTVVALAQKLGLSRNTVQARMAQLEKKHVFLSFERRINPASLGYPLMAFISVHVQQQKLGQLAHDLAGIPEILEGYGLTGSADLLLRVVALDAEDLFRINGKILACDGVDRTDTALAMSELIPFRIQPLLERGSGDA
>NZ_CP013747.1|WP_083510541.1|780797_781253_+|hypothetical-protein
MPGQEPPAQSRRKLWTILGVVGGVLLLAVVGVLILVNIVNGATNHARGLADSFTKLVIAGDSSKAYDDYLDPALHEQLTKEDFIAGIKTLEMDSTCKTAYNEVKASTENGTKAADVAGLITCDGDKKIDLVYRFEGTDELKMINIKLKPQA
>NZ_CP013747.1|WP_058929528.1|781363_782980_-|cation-acetate-symporter
MIGIATAVDVADLKETTLLNMGIFGLFVAVTMVIVLRASRNNKTAADYYAAGRSFTGSQNGTAIAGDYLSAASFLGITGAIAINGYDGFMYSIGFLVAWLVALLLVAELLRNTGKFTMADVLSFRLKQRPVRIAAAISTLAVCFFYLLAQMAGAGSLISLLLGISDWGGQALVIIVVGALMIMYVLIGGMKGTTWVQIIKAILLIAGAAVMTFWVLAIYGFNVSSLLGAAVDTAGNPAVLNPGLQYGKTETSKLDFMSLGLALVLGTAALPHVLMRFYTVPTAKEARKSVVWSIWLIGLFYLFTLVLGYGAAALVGAETIKSAPGGVNSAAPLLAFHLGGPMLLGFISAVAFATILAVVAGLTITAAASFAHDIYASVISKGKADADTEVKVARRTVVVIGVMAILGGIFANGQNVAFLVALAFAVAASANLPTIIYSLFWRRFTTQGAVWSMYGGLGSAIVLIAFSPVVSGLKTSMIPGANFAFFPLSNPGIVSIPLAFLLGWLGTVLDKKREDSAKQAEMEVRSLTGVGAEKAVDH
>NZ_CP013747.1|WP_058929529.1|782976_783357_-|DUF485-domain-containing-protein
MGNDAHTPDAAASVDFEQVQSTERFQKLRKRHRSFVFPMAVAFLLWYFAYVLLADYAVEFMSTKVWGNINVGLILGLLQFVSTFAITGWYVSYSNRKLDPIAAEIRNEIEGHEFDKDGNILSGVTK
>NZ_CP013747.1|WP_058932722.1|783535_784726_+|histidine-kinase
MPDSPLLTAAAVAVITLAIAVVVGVGIKLLRSFRELGTDAERATYNTLHAASSAGQHLRTGLNPAGAAKASRQLRNLLGCDALAITDTAGVLAWDGAAEELKPRLMELAADVLIGGRTAVLQARDLGTGHASGSFAAVIAPVRAGSRVVGVVAAFAPAAGAGLVRATSEVADWVAVQVELAELDASRTLLMEAEVRALRAQISPHFIYNSLNAIASFINTDPERARELVVEFADFTRYSFRRHGDFTTLAEELRCIDRYLLLERARFGDRVQVSLRIAPEVLSTVIPFLSLQPLVENAVRHGLEAKEGAGHITITANDSGAYAEVTIEDDGVGMDPAELQSMLAGHHDGDHVGLRNVDARLRQVYGDQHGLVIETAPGEGTLITMRVPKSQPGHDA
>NZ_CP013747.1|WP_058929530.1|784772_785495_+|response-regulator-transcription-factor
MINVLVADDELPAVEELAYLLGKDDRIGVIHRAISGTEALRALNTATVDAVFLDIHMPAVSGLDVARAIARSSKPPVVVFVTADEDCALEAFELAAVDYLLKPVRAERLSRTVGRISELLRDGGGPAPEMITVDQGGTTRMIRRDDVTYVQAQGDYARLHTADASYLIRVPLADLEQQWAEAGFIRTHRSYLVALKHVQSMKLTADKPSVSVAGAGLPISRRHLPTVREKLEATRIRPQA
>NZ_CP013747.1|WP_058929531.1|785491_785842_+|hypothetical-protein
MTRVRVTAPRSAPRPARESREAAEESEVGQVFVRSLIRSQLRLALVVAIGFMLILSAFPLLLAALPGLAETRIAGIPFDWILLGAGIYPVIGLSAWLYIRTATRNEARYRDLAGDE
>NZ_CP013747.1|WP_058929532.1|785849_787316_+|cation-acetate-symporter
MNPAVGVVALVVVSLATAAIGFYGLRISRTTGDFYVASRTVRPWWNASAIGGEYLSAASFLGVAGLILLSGTDALWFPVGYTAGYLMLLLFVAAPLRRSGAYTIPDFTEARLDSRAVRRVTSVVVVVVGWLYIVPQLHGAALTIRISTGLPAWVGSVAVVVVVCLTVVAGGMRSITFVQAFQFWLKLTALAVPVLFIVFTLAGDGSAAVAPAVVNPTGLAPAGPYQNISLLVALLFGTLGLPHVLVRFYTNPDGHSARRTTLIVLGLLSVFYLFPTAYGLVGRMFAPELARSGQADAVVLLLPGQLIGGTAGDLLSALVVAGAFAAFLSTTSGLVVSLAGVISQDVLGGSVRGFRLAAVVSAVVPLGFAVMTDSLALAGSVGLVFAFTASTVCPVLLLGIWWRGLTDAGAIAGMVTGGVLCGGAMVWGTVLGASGTPFWLAQPAAWTVPAAFAVMVLVSRGTKHRIPRTMSRVMTRLHTPERPLVTER

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Crispr_ID: NZ_CP013747_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013747_3

2880991-2881094

Orphan

Consensus_repeat	Method
CGCAGTTAACATGTTGGAAACATTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013747_3

>merge|NZ_CP013747|3|2880991-2881094|CRISPRCasFinder
CGCAGTTAACATGTTGGAAACATTCGGGAGCGGGCTGGGCGGGTCGGTCCGTGAGAAATTTGAGGCTGAATCTTCCCACCGCAGTTAACATGCTGGAAACATTC

>NZ_CP013747|3|3|2880991-2881094|CRISPRCasFinder
CGCAGTTAACATGTTGGAAACATTC	GGGAGCGGGCTGGGCGGGTCGGTCCGTGAGAAATTTGAGGCTGAATCTTCCCAC
CGCAGTTAACATGCTGGAAACATTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013747.1\|WP_058931085.1\|2876982_2878464_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|372624
NZ_CP013747.1\|WP_058932919.1\|2881338_2882688_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP013747.1\|WP_058931083.1\|2874988_2876170_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NZ_CP013747.1\|WP_058931076.1\|2867553_2868027_+\|ribose-5-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235509
NZ_CP013747.1\|WP_058932921.1\|2893719_2894058_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380357
NZ_CP013747.1\|WP_058932920.1\|2887783_2889604_+\|glycoside-hydrolase-family-15-protein	unknown	unknown	gnl\|CDD\|225922
NZ_CP013747.1\|WP_058931077.1\|2868109_2869129_+\|class-II-fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|236406
NZ_CP013747.1\|WP_058931080.1\|2872217_2872580_+\|DUF861-domain-containing-protein	unknown	unknown	gnl\|CDD\|225981
NZ_CP013747.1\|WP_157768979.1\|2876230_2876890_-\|DUF5134-domain-containing-protein	unknown	unknown	gnl\|CDD\|375044
NZ_CP013747.1\|WP_083510375.1\|2870473_2871967_-\|glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|236219
NZ_CP013747.1\|WP_058931091.1\|2891993_2893475_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|372624
NZ_CP013747.1\|WP_167349831.1\|2889625_2891029_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_CP013747.1\|WP_083510585.1\|2872809_2873766_+\|HAD-IIA-family-hydrolase	unknown	unknown	gnl\|CDD\|319832
NZ_CP013747.1\|WP_058931086.1\|2882684_2883428_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224332
NZ_CP013747.1\|WP_058931093.1\|2895126_2896527_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224983
NZ_CP013747.1\|WP_058931078.1\|2869135_2870161_-\|ATP-dependent-6-phosphofructokinase	unknown	unknown	gnl\|CDD\|274155
NZ_CP013747.1\|WP_058931082.1\|2873846_2874878_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP013747.1\|WP_167349858.1\|2885471_2887367_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP013747.1\|WP_058931092.1\|2894583_2894964_+\|DUF861-domain-containing-protein	unknown	unknown	gnl\|CDD\|380357
NZ_CP013747.1\|WP_058931087.1\|2883564_2885313_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055

Protein	Function_ID	Function_description	E-value
NZ_CP013747.1\|WP_058931085.1\|2876982_2878464_-\|APC-family-permease	gnl\|CDD\|372624	pfam13520, AA_permease_2, Amino acid permease.	3.52122e-46
NZ_CP013747.1\|WP_058932919.1\|2881338_2882688_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	5.03482e-29
NZ_CP013747.1\|WP_058931083.1\|2874988_2876170_-\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	1.05746e-40
NZ_CP013747.1\|WP_058931076.1\|2867553_2868027_+\|ribose-5-phosphate-isomerase	gnl\|CDD\|235509	PRK05571, PRK05571, ribose-5-phosphate isomerase B; Provisional.	1.10243e-72
NZ_CP013747.1\|WP_058932921.1\|2893719_2894058_-\|cupin-domain-containing-protein	gnl\|CDD\|380357	cd02228, cupin_EutQ, Clostridium difficile EutQ and related proteins, cupin domain. This family includes bacterial and fungal proteins homologous to ethanolamine utilization protein EutQ found in Clostridium difficile, as well as in other bacteria, including the enteric pathogens Salmonella enterica and Enterococcus faecalis. EutQ is encoded by the eutQ gene which is part of the eut (ethanolamine utilization) operon found to be essential during anoxic growth of S. enterica on ethanolamine and tetrathionate. In C. difficile, inability to utilize ethanolamine results in greater virulence and a shorter time to morbidity in the animal model, suggesting that, in contrast to other intestinal pathogens, the metabolism of ethanolamine can delay the onset of disease. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization. In contrast to the metal-binding catalytic cupins, the EutQ family does not possess the histidine residues that are responsible for metal coordination in the oxidoreductase and epimerase classes of cupins.	2.30243e-06
NZ_CP013747.1\|WP_058932920.1\|2887783_2889604_+\|glycoside-hydrolase-family-15-protein	gnl\|CDD\|225922	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism].	4.62464e-124
NZ_CP013747.1\|WP_058931077.1\|2868109_2869129_+\|class-II-fructose-bisphosphate-aldolase	gnl\|CDD\|236406	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional.	0
NZ_CP013747.1\|WP_058931080.1\|2872217_2872580_+\|DUF861-domain-containing-protein	gnl\|CDD\|225981	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only].	7.05914e-21
NZ_CP013747.1\|WP_157768979.1\|2876230_2876890_-\|DUF5134-domain-containing-protein	gnl\|CDD\|375044	pfam17197, DUF5134, Domain of unknown function (DUF5134). Proteins in this family are uncharacterized, but have been identified as members of a gene cluster for the synthesis of the tetramic-acid antibiotic streptolydigin, which inhibits bacterial RNA polymerase (RNAP).	0.00099626
NZ_CP013747.1\|WP_083510375.1\|2870473_2871967_-\|glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|236219	PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase; Reviewed.	0
NZ_CP013747.1\|WP_058931091.1\|2891993_2893475_-\|APC-family-permease	gnl\|CDD\|372624	pfam13520, AA_permease_2, Amino acid permease.	9.91841e-43
NZ_CP013747.1\|WP_167349831.1\|2889625_2891029_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	3.69648e-26
NZ_CP013747.1\|WP_083510585.1\|2872809_2873766_+\|HAD-IIA-family-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.42178e-89
NZ_CP013747.1\|WP_058931086.1\|2882684_2883428_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	2.31877e-31
NZ_CP013747.1\|WP_058931093.1\|2895126_2896527_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	2.95615e-78
NZ_CP013747.1\|WP_058931078.1\|2869135_2870161_-\|ATP-dependent-6-phosphofructokinase	gnl\|CDD\|274155	TIGR02483, ATP-dependent_6-phosphofructokinase_1, phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal. [Energy metabolism, Glycolysis/gluconeogenesis].	1.07846e-164
NZ_CP013747.1\|WP_058931082.1\|2873846_2874878_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	8.98721e-75
NZ_CP013747.1\|WP_167349858.1\|2885471_2887367_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP013747.1\|WP_058931092.1\|2894583_2894964_+\|DUF861-domain-containing-protein	gnl\|CDD\|380357	cd02228, cupin_EutQ, Clostridium difficile EutQ and related proteins, cupin domain. This family includes bacterial and fungal proteins homologous to ethanolamine utilization protein EutQ found in Clostridium difficile, as well as in other bacteria, including the enteric pathogens Salmonella enterica and Enterococcus faecalis. EutQ is encoded by the eutQ gene which is part of the eut (ethanolamine utilization) operon found to be essential during anoxic growth of S. enterica on ethanolamine and tetrathionate. In C. difficile, inability to utilize ethanolamine results in greater virulence and a shorter time to morbidity in the animal model, suggesting that, in contrast to other intestinal pathogens, the metabolism of ethanolamine can delay the onset of disease. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization. In contrast to the metal-binding catalytic cupins, the EutQ family does not possess the histidine residues that are responsible for metal coordination in the oxidoreductase and epimerase classes of cupins.	1.03627e-29
NZ_CP013747.1\|WP_058931087.1\|2883564_2885313_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.3781e-163

>NZ_CP013747.1|WP_058931085.1|2876982_2878464_-|APC-family-permease
MSENRLDEGDDLKRSINWKQGAAIALGVPMLILPSLGYLPMYVSAAAILIWGISVLQGFLQNAAYAEMATTFPKASGLPGFAQHLFRTENYKGKYDKGKLIGGFTAWSYWFGWNPILAIFAITAGGYLHGLFPALGDTFTEYQLALISGLVIFGGLFIVNWFGLKDGALLGYILAAISLIPLVILAVAPFATGHVDLANITGNWWPTDWAWDMHHILMLFGIFAIAQWSACAWETAAIYGPEYKNPSKDVPKALLACGIICLVLYVLLQAAVIGVLGVEGVQEQSVSPLIPVAQAAFGQAGSIITIIMLIAAMVLIIQTAYLGSSRAMHSMAVEGNIPRVFGRTNRHGTPFVALLVIGAFNLVLISMGNAAAILAASAIGYTCANGISLFAYVKAKKHPAFANLERPFNAPKGWTNVSMIFGLFNVPLCLIGVVYLNSLEIGWTSTWVGFLVLALYLPIWLYSQHESRRTKPEAAAPPAVHAADEREKVLDLT
>NZ_CP013747.1|WP_157768979.1|2876230_2876890_-|DUF5134-domain-containing-protein
MFNSPAITWALTAVLLLGGSHYVLQAAKSRHLTNRVNNSLHALMMVLMAAMLWNLAPSTVLAQIAILAGAALWFVIQAVARPEFKLLCAGSQGRLKCVYHSFTMGAAALMIAMMGHAATAGHDIAPATAMPASNAHHGTASAVHSTAAPGLDHSADLAIPLTVFFAAAAVVFIVLLLRYRATIPAHHSAYIPKPSRRAEHGLEALGAAVMALMFATMSA
>NZ_CP013747.1|WP_058931083.1|2874988_2876170_-|cation:proton-antiporter
MNPLALSLIELGAVVFSLGLLARLAERIGMSPIPLYLLGGLAFGTGGIVELEGMKQSAHLFGEIGVILLLLVLGLEYTASELFTGLRRSWRAGLLDLVLNFLPGAALALFLNCGFVGAMVMGGATYISSSGIAAKVITDLGWLGNRETRVVISILVFEDLTMVIYLPVLTSILAGVSFVSGLTTVGIALAVVSVVLLVALRHGHRVSKAVQSENSEVFLLNVLGAALLVAGVASAMLVSAAVGAFLLGIAISGATSHNAARILAPLRDLFAAIFFVAFGLNTDPASIPPVLGWALALAVVTTASKMATGIWAAKREGIARPGRLRAGAALVARGEFSIVIAGLAVASGAVTQELAAMATAYVLIMAVVGPLAARYVEPLVEIVLSAEGVVTKV
>NZ_CP013747.1|WP_058931082.1|2873846_2874878_+|Gfo/Idh/MocA-family-oxidoreductase
MSEKLRWGVLGTAHIVRKTITALQKTKNGEVVGIASRTEEKAREYANKHGVPQAFGSYEALLASPDIDAVYIPLPNSLHLEWILKSLDAGKHVLCEKPLAMSAAECEEISRKADETGLKVLEGFMYRFHPRFEKLQELLAAGTVGKLTFLHVGHSFDAGGDDNIRWYAGLGGGALFDTGCYCVNVSRMVVGQEPARVTAFGNYRDANDGGLIDASIAGMLRFPGSATALFDTGVNLERRNFLEITGTEGRLYLDNPFGLLEEDSVLEEHHFGQDTIHHEFKGENHFVRMGEHFADSVLNGRPLRYDLTDAGANARVLEALDQAARKHEASEPKPHSGAGAGVS
>NZ_CP013747.1|WP_083510585.1|2872809_2873766_+|HAD-IIA-family-hydrolase
MLADLDGVVYTGPRAIDGATNALDKLEGEGKSLAYVTNNASRSPEEVATHLRELGAPATAEQVFGSALAGAQLLAAKMAAGAAVLVVGSQILADSVRAQGLVVVSSSDDRPDAVIQGFSPALGWKDLAEAAYAVTAGATWVATNMDMTLPQERGFAPGNGSLVAAVAAATGKSPLVAGKPEAALFETAARHSGVERALVVGDRLDTDILGGNRAGMATVLVLTGVDSVQTALAARLDERPNYVIRSLGELYVEYPAITADDGAYSCGAAVARASGSTVSINGRENDLNSWRAACAAWWAAHPLMTPHSAPEIVFTTAG
>NZ_CP013747.1|WP_058931080.1|2872217_2872580_+|DUF861-domain-containing-protein
MSVTFQPSELFAGDLDKSLLGPPLAEVLGDEIPTRIAVPFTSDDSRILSGVWEADPGLSRWEFLERGEAIHVLEGRMVVTQDGAGPITLEAGTAAVFPIGWQGTWEIQERIRKFFVIFSA
>NZ_CP013747.1|WP_083510375.1|2870473_2871967_-|glyceraldehyde-3-phosphate-dehydrogenase
MQQLPDSCLDTWMGREALAEAMIPVIGRLYRENNVVTSIHGRSLINKSTMGILKAHRFARRISNDELLPGETAPLLNTLAGLDLGAAAIDIARLNQKFKEEGGGATLEEFLRAELADVVGRRGADDRASTDVVLYGFGRIGRLLARLLIEKAGGGHGLRLRAIVVRRGSDNDLTKRASLLRRDSVHGSFEGTIRVNEEAGTITANGVQVQVIYSDNPATIDYTAYGIHNALVVDNTGRWRDVEGLSQHLLSKGVARVLLTAPGKGELKNIVHGINHGTILDSDKIVSAASCTTNAITPVLKAINDRFGVVHGHVETVHSFTNDQNLIDNFHKGDRRGRSAALNMVITETGAATAVAKALPELLGKLTGSSIRVPTPDVSLAILNLSLENGTTKDEVNSFLRDMSLHSDLRKQIDYMDSPDVVSTDFVGSRHAGIVDSLATISNDKNLVLYVWYDNEFGYSCQVVRVMEEMAGVNRPSFPARDVVQEAMSVLAALKSA
>NZ_CP013747.1|WP_058931078.1|2869135_2870161_-|ATP-dependent-6-phosphofructokinase
MKIGILTSGGDCPGLNAVIRGAVLKGITVHGHEFVGFLDGWRGVVEGDIIDIPRTMVRGIAKQGGTILGTSRTNPFENGGGPAVIKDHMDRLGIDAIIAIGGEGTLAAAKRLTDAGLKIVGVPKTVDNDLDATDYTFGFDTAVQIATEAIDRLRTTAESHHRCMIAEVMGRHVGWIALHAGMAAGAHAILIPEQKISIEQIAQWVKEAHARGRAPLVVVAEGFVPDYMESPHSERGLDTFGRPRLGGIADQLVPELEARTGIETRATILGHIQRGGVPSAFDRVLATRLGMAAIDSVVEGCWGTMVALKGTDIEHVGFAEALGKLKTVPQDRYEEAAVLFG
>NZ_CP013747.1|WP_058931077.1|2868109_2869129_+|class-II-fructose-bisphosphate-aldolase
MPIATPEIYSEMIDRAKAGGFAFPAVNVTSSQTLNAALRGFAEAESDGIVQVSTGGAAYWSGAATKDMVAGSLGFAAFAREVAKNYNVNIALHTDHCPKDKLDGFVLPLLAASEAEVKAGRNPIFNSHMWDGSHETLEDNLRIARELLERTAAAKMILEVEIGIVGGEEDGVENAINDKLYTTVEDALATIEALGAGENGRYLTALTFGNVHGVYKPGGVKLRPEILKDIQAQVGAKLGKDSPFDLVFHGGSGSSDQEIADAVSYGVIKMNIDTDTQYAFTRPVAGHMLANYDGVLKIDGEMGNKKLYDPRVWGASAEAGLSARIVEATKQLGSAGKTI
>NZ_CP013747.1|WP_058931076.1|2867553_2868027_+|ribose-5-phosphate-isomerase
MRVHIGTDHAGMELSSHLINALSANGYEMVDHGPAAYDAEDDYPSFCIKAASAVVADQAAGIDALGIVLGGSGNGEQIAANKVKGVRAALAWNLDTAKLAREHNNANVVAVGGRQHTVQEATELIEAFLAEPFSNAERHERRIGKIATYETTGEVAE
>NZ_CP013747.1|WP_058932919.1|2881338_2882688_+|APC-family-permease
MTVIPALIFPGLVFGSDGPNLVLTFGAAMAVMILVALCLRPMAKRMAAVSGLYSYTAKGLGQRTAITAGWSAIFGYGLVAMASLLAVGMYVVELFINLGIPVADPEVLAVLVILAAAGAACFLMIRGIQLSAWSTLLMESISIGILAVLMVVYFAFNEPKVNLGTVFAWNGHFDSLSIAIVVAVSAFVGFESPTTLGGEAQKPFVSVPRAITWTPILAGVLYLLAATAQDVALRDAPSDITASSTPLSDLFSQTSPVFAAVLDLGIAASWFACAIASVNALARIFFCMGREGVAPRAVGRTHPAFRTPSTAILAVMPVVAIVPIAIIIFGASPEEGLANLFTLGAYGYLGSYILASASLPFFLRRIGENTYASWVLGAATSMVLGAVLWMAATTSIGTGNLQTLIYAGVLLASVIYAMYLHRRLPMRLASVGIYDETRESDLFHGGPIK
>NZ_CP013747.1|WP_058931086.1|2882684_2883428_+|helix-turn-helix-domain-containing-protein
MNYRPSHSGSGPASNSLRLLEIVARFGTGTTAKEITDALRMPPATAYRLLNALVGDEYLVRTSDLRGFALGHAISGLVTAANPPTVPTAARTVLEEFRQGNRFAVHLFMFRSASLRIADEDPDYPLHSVYEMLRYPHTSAPGKLMLAELGNSVFPLPSGQLVKLTEDTITDSGQLYKQLAEIRLNGQASEINELESGSASLALPVRQPDGSVGAALCLTGPAERFTTISEHAEAARELTTRLSPLLF
>NZ_CP013747.1|WP_058931087.1|2883564_2885313_+|ABC-transporter-ATP-binding-protein
MLWKLLVEYLRPHRQLLIAVVIFQLAQSIASLYLPTLNADIIDEGVAKGDTGVILSLGGLMLAITLLQIICAVIAVYFGAKAAMGAGRDLRGAIFTRVGEFSEQEVTKFGAPSLITRSTNDVQQVQQLVLMAATMMVAAPMLAIGGVIMAVRQDVQLSWLIAVAVPVLMIGVGLIITRMVPLFRKMQKRIDTVNRVLREQLTGIRVVRAFVREDIETARFAQANEDVTDTALRAGRLMALAFPVVMLVLNVSSVAVIWFGSFRIEDGSMQVGTLIAFLSYLMQILMSVMMATFMAVMIPRAAVSADRIGEVLDTESSVRPPLKPVTSVVPYGGRRRGELEMRDVGFAYPGADQPVLSGLSFTAKAGQTTAIIGSTGAGKTTLVNLMPRLFDATTGSVRMDGVDVRELHPDLLWGHIGLVPQRPYLFSGTVRSNLQYGKPDATEDELWTALEIAQARDFVEEMEGGLDAPISQGGTNVSGGQRQRLAIARALVKRPELYIFDDSFSSLDTGTDARLRQALKRSTSGATLVIIAQRVSSIVDTDQILVLDDGRIVGRGTNRELLETSETYREIVSSQLAAEETV
>NZ_CP013747.1|WP_167349858.1|2885471_2887367_+|ATP-binding-cassette-domain-containing-protein
MNVPAEKAMNFGPSARRLVGTLRPERAWLLLVLVMGVASVTLSVIGPRLLGEGTNLIFAGVVSRELPAGVSKAELIAQLRAAGENQRADMLTPMALTPGEGIDFAALSGVLLWALALYVLASAFMWVQAYVLNGVVQRTVFGLREEIEAKIHRLPLRYFDSIQRGELLSRVTNDVDNISQSLQQSISQAVTSVLTVVGVLVMMFILSPTLALIALVTVPLTLGITALIAKRSQKLFVAQWKHTGELNGQIEETYTGHALVKVFGRQREVEERFRQKNVELYDASFGAQFISGLIMPAMTFIGNLVYVGIAVVGGLQVASGAMQLGDVQAFIQYSRQFTMPLAQLGSMANLLQSGVASAERVFSLLDEDEQSADPASGVPPNGAGRGRLVFDDVSFSYSPDKPLISSLSLVAEPGQTVAIVGPTGAGKTTLVNLMMRFYELDAGRITLDGVDVTSVPRRELRSRLGMVLQDTWLFGGTIRDNIAYGRPSATEDEILEAARATYVDRFVHSLPEGYDTVLEDEGSNVSAGEKQLLTIARAFLARPSVLILDEATSSVDTRTEVLVQKAMRALRSDRTSFVIAHRLSTIRDADLILVMEAGQIVEQGTHASLLAAGGAYARLYEAQFAAPVAEI
>NZ_CP013747.1|WP_058932920.1|2887783_2889604_+|glycoside-hydrolase-family-15-protein
MASPIEDYALLSDLQTGPLISRDGSVDWLCFPRFDSPSVFSRILGTDEHGHWLLAPSDAGAAVVDRHYIDSTFVLQTIWKTGGGTVLVTDFMPLGDNGSSLVRRVTGLEGSVEMHQELRIRPGYSTVLPWMSRVRDNAHTAAPVLLAMAGPDALALRGPHLPHAHAHGHEGEFLVSEGEQLDFELTWFPSHRPLPAATDVDVALEEATDYWSRWGSHCRQDGAYGDAVKRSLLVLRALTHFETGGIVAAPTTSLPEDFGGPRNWDYRYCWLRDAALTLESMLTHGYETEALQWRNWLLRALAGDPEQMQIMYGIGGERELPERELPHLPGYANSKPVRIGNAAVSQFQADVVGEVMVALERLRMAGGKEDHFSWALQKVLLGFVEKHIDDKDFGLWEMRGAAQYFTHSRVMMWAAFNSGIRAVRIHGLPGDAEKWEQLRDRLREEIMREGFNRSIDSFTQTYGGTQTDAALLVMPQVGFLPYNDKHMLSTVTRLEQELLTDDGLLLRYRTESGVDGLEPGEHPFLACSFWLVEQYARTGRQAEAKVLMDKLVGLANELGLLSEEYATDEDRMAGNFPQAFSHLTLVRAADAMHGVDRLSLAVEAPV
>NZ_CP013747.1|WP_167349831.1|2889625_2891029_-|GntR-family-transcriptional-regulator
MATFDRGEEVGRRLKYAIELGVLEDGSQLPSESELAAKMGVSTLTLRAALAELRGRGLLETRRGKGGGSFVKASTGDIIKAERESLMAYSLDDLRDIREYWAFLAGSAAASAAERSGRLSLGRLASMAVKIASSEDSAQAIRDDSRFHIELAASSGSVRLTREEMAMQAEVGPLIWAAPAENGNAAAEHVAIVEAIRSGDGMLARALAEEHVRSDMNRVLDLRMSVDASREESFPGPRKEEREVASIESFTELLADTASSSIRSIEHAVHVQLGSQRQGDSSDLDAIYDASRRTLAGAVPLLYGAGFLPDVSFGPAGAAWCHAPAGPQSLQRLVIDWDLYEGGTATWRPEDYGDRAVHISHAYLDANGSNENIVTFSKAVFSGEQMVGIAAADVLVRGIQGQLEPHLRALPPNTCLVDQNDVIIATNTGRFMGGIYSPAQYAGKQLDLHAMPWRLFVGIPTAGTTGE
>NZ_CP013747.1|WP_058931091.1|2891993_2893475_-|APC-family-permease
MSKNHSDGVGHLERSIDWKQGLAIALGVPLLILPSLGYLPMYLSAAAILVWGLSVLQGFFQNTAYAELATTFPKASGLPGFAQHVFRTENYKGKYDKGKLIGGFSAWSYWFAWNPVLAIFAILVGGYLHGLFPVLGETFTEYQLALLSGLVIFTGLSVVNWFGLKDGALLGYVLAAISLIPLVVLAVAPFATGHVELANITGNWLPADWSWDMHHILILFGIFAIAQWSACGWETAAIYGPEYKKPGKDVPKALFACGIICFFSYVLVQAAVIGVLGVEGVQAEPISPLIPVALAVFGEAGTVITIIMLIAAMILIIQTAYLGSSRAMHSMATEGNLPRVFGKTNRQGTPFVAMLVTAAFNMALISMGSISAILAAAAIGYTCANGISLFAYVKAKKHPAFANLERPFKAPKGWKHVAMAFGLFNLPLCLVGVVYLNSLEIGWTSTWLGFLVLALYIPLWFYSQHESGRSKNAAAARSSDHDAADLAKLPASR
>NZ_CP013747.1|WP_058932921.1|2893719_2894058_-|cupin-domain-containing-protein
MKAMKDEWPRLRCRFINSNPVGPWDELILSEWELEACGWEDFHPHSETNFVLEGELHIESEGKTVILRPGDAARVNPGQLGRYWAPVYARMVTTYGPNPEGTESHSFRYFEI
>NZ_CP013747.1|WP_058931092.1|2894583_2894964_+|DUF861-domain-containing-protein
METNLVGTLSKAGSIHKVEGGYVGLPPMNEPGTVAAIGDSLHNPEGSVMSAGFFELKASEPLVYTYTYDEMKVVVQGEFILTDQTSGEVTHAKERDILFFPKGTTVKFETPEYGLGFFAGHRSFAP
>NZ_CP013747.1|WP_058931093.1|2895126_2896527_+|NAD(P)/FAD-dependent-oxidoreductase
MTLRVGIIGAGPSGLAQLRAFESARQKGAPIPEILCFEKQDDWGGQWNNSWRIGLDAHGEPVHSSMYRHLWSNGPKECLEFSDYSFDEHFGRPISSFPPREVLFDYIKGRVEKSDVRKYVKFNTVARHTSYNEATQEFTLTVEDLKTNLTETHVFDKLVVATGHFSVPSVPEFKGIKTFPGEVLHAHDFRGAERFYGKNLLMIGSSYSAEDIGMQAHKMGAASITISYRTSPMDYHWPENTVERPLVTHFQGHTAHFSDGTQDDFDAVVLGTGYQHKYPFLPSELSLMSPNVLYPGNLYKGVVWQQNTNLFYLGAQDQYYTFNMFDAQAWFARDVMTGAIDLPSLAEREADIQLWLERQAALPDHDSEADFQTDYLRELIDATDYPPFDLDAVSQLFKDWMHHKETDILGYRDMVHRSVVTGTMAIRHHTRWLNAMDDSLERYLYGPSQDIDTETPADVTDSLAAR

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Crispr_ID: NZ_CP013747_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013747_4

3290708-3291012

Orphan

Consensus_repeat	Method
GGATCCGNCNNCNNNCCC	CRT

5 spacers

The CRISPR arrays of NZ_CP013747_4

>merge|NZ_CP013747|4|3290708-3291012|CRT
GGGGCCGCTGCCGGGCCGGGCACTCCTGGTGAGCCTGCAGAGGGTTCCGGAGGCTCCAGCCCGGGTCCGGTGACTAACCCTACGACGGATCCGCCGCCGAGCCCGGTCCTATTGCCCGTCGATCCTGTACCTGATCCGACCACTGACCCGGTTCCGGATCCGACCACCGACCCTGCGCCCGATCCGACCACCGACCCTGCGCCGGATCCGACCACCAATCCGACCACTGACCCGGTTCCGGATCCGACCACCGACCCTGCGCCGGATCCGACCACTGACCCGGCTCCCGATCCGACCACCGGCCC

>NZ_CP013747|4|1|3290708-3291012|CRT
GGGGCCGCTGCCGGGCCG	GGCACTCCTGGTGAGCCTGCAGAGGGTTCCGGAGGCTCCAGCCCGGGTCCGGTGACTAACCCTACGAC
GGATCCGCCGCCGAGCCC	GGTCCTATTGCCCGTCGATCCTGTACCTGATCCGACCACTGACCCGGTTCC
GGATCCGACCACCGACCC	TGCGCCCGATCCGACCACCGACCCTGCGCC
GGATCCGACCACCAATCC	GACCACTGACCCGGTTCC
GGATCCGACCACCGACCC	TGCGCCGGATCCGACCACTGACCCGGCTCC
CGATCCGACCACCGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013747.1\|WP_058931385.1\|3285261_3286017_+\|cytochrome-C-biogenesis-protein-ResC	unknown	unknown	gnl\|CDD\|280792
NZ_CP013747.1\|WP_083510594.1\|3282371_3282821_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013747.1\|WP_058931383.1\|3283177_3283726_-\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NZ_CP013747.1\|WP_058931392.1\|3298818_3299280_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379161
NZ_CP013747.1\|WP_058931397.1\|3303063_3303825_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|224185
NZ_CP013747.1\|WP_058931386.1\|3286016_3287774_+\|cytochrome-c-biogenesis-protein-ResB	unknown	unknown	gnl\|CDD\|377471
NZ_CP013747.1\|WP_099093400.1\|3280598_3281336_+\|redox-sensing-transcriptional-repressor-Rex	unknown	unknown	gnl\|CDD\|235486
NZ_CP013747.1\|WP_058931395.1\|3300690_3301893_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236108
NZ_CP013747.1\|WP_058932976.1\|3283928_3284609_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP013747.1\|WP_058931387.1\|3287773_3288898_+\|c-type-cytochrome-biogenesis-protein-CcsB	unknown	unknown	gnl\|CDD\|274447
NZ_CP013747.1\|WP_058931393.1\|3299340_3299697_+\|DUF4229-domain-containing-protein	unknown	unknown	gnl\|CDD\|379415
NZ_CP013747.1\|WP_058931394.1\|3299729_3300611_-\|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	unknown	unknown	gnl\|CDD\|235695
NZ_CP013747.1\|WP_058931380.1\|3280265_3280541_+\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|368604
NZ_CP013747.1\|WP_058931382.1\|3281393_3282191_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236669
NZ_CP013747.1\|WP_058931391.1\|3296681_3298175_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|206739
NZ_CP013747.1\|WP_058931389.1\|3293388_3294534_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227596
NZ_CP013747.1\|WP_058931384.1\|3284610_3285246_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP013747.1\|WP_058931396.1\|3301966_3302920_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	unknown	unknown	gnl\|CDD\|181386
NZ_CP013747.1\|WP_058931388.1\|3291169_3293224_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP013747.1\|WP_058932978.1\|3298184_3298724_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013747.1\|WP_058931385.1\|3285261_3286017_+\|cytochrome-C-biogenesis-protein-ResC	gnl\|CDD\|280792	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region. This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.	3.11376e-36
NZ_CP013747.1\|WP_058931391.1\|3296681_3298175_+\|GTP-binding-protein	gnl\|CDD\|206739	cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins. The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner.	2.48721e-14
NZ_CP013747.1\|WP_058931383.1\|3283177_3283726_-\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	2.76189e-53
NZ_CP013747.1\|WP_058931392.1\|3298818_3299280_-\|hypothetical-protein	gnl\|CDD\|379161	pfam13396, PLDc_N, Phospholipase_D-nuclease N-terminal. This family is often found at the very N-terminus of proteins from the phospholipase_D-nuclease family, PLDc, pfam00614. However, a large number of members are full-length within this family.	1.86262e-10
NZ_CP013747.1\|WP_058931397.1\|3303063_3303825_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|224185	COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only].	1.53383e-09
NZ_CP013747.1\|WP_058931386.1\|3286016_3287774_+\|cytochrome-c-biogenesis-protein-ResB	gnl\|CDD\|377471	pfam05140, ResB, ResB-like family. This family includes both ResB and cytochrome c biogenesis proteins. Mutations in ResB indicate that they are essential for growth. ResB is predicted to be a transmembrane protein.	2.05607e-174
NZ_CP013747.1\|WP_099093400.1\|3280598_3281336_+\|redox-sensing-transcriptional-repressor-Rex	gnl\|CDD\|235486	PRK05472, PRK05472, redox-sensing transcriptional repressor Rex; Provisional.	5.65572e-108
NZ_CP013747.1\|WP_058931395.1\|3300690_3301893_-\|AMP-binding-protein	gnl\|CDD\|236108	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase.	7.72739e-93
NZ_CP013747.1\|WP_058932976.1\|3283928_3284609_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	6.25434e-32
NZ_CP013747.1\|WP_058931387.1\|3287773_3288898_+\|c-type-cytochrome-biogenesis-protein-CcsB	gnl\|CDD\|274447	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair].	2.05428e-82
NZ_CP013747.1\|WP_058931393.1\|3299340_3299697_+\|DUF4229-domain-containing-protein	gnl\|CDD\|379415	pfam14012, DUF4229, Protein of unknown function (DUF4229). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 95 and 122 amino acids in length.	1.59484e-09
NZ_CP013747.1\|WP_058931380.1\|3280265_3280541_+\|glutaredoxin-family-protein	gnl\|CDD\|368604	pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.	1.16027e-13
NZ_CP013747.1\|WP_058931382.1\|3281393_3282191_-\|hypothetical-protein	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	1.56637e-05
NZ_CP013747.1\|WP_058931394.1\|3299729_3300611_-\|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	gnl\|CDD\|235695	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated.	3.79632e-125
NZ_CP013747.1\|WP_058931389.1\|3293388_3294534_+\|hypothetical-protein	gnl\|CDD\|227596	COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only].	0.000132236
NZ_CP013747.1\|WP_058931384.1\|3284610_3285246_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	2.14174e-32
NZ_CP013747.1\|WP_058931396.1\|3301966_3302920_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	gnl\|CDD\|181386	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase.	0
NZ_CP013747.1\|WP_058931388.1\|3291169_3293224_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	3.59281e-15

>NZ_CP013747.1|WP_058931387.1|3287773_3288898_+|c-type-cytochrome-biogenesis-protein-CcsB
MPFAINETMGQYSELFMLLAAGTYTVAFIAFAWDLAKSSRALRAIDLKAAEAAGTKVPAMAGAGASAGSAAAADSVVTDRVDSHLAGPVGRAERPSSSVAKRGGDASGAGQTADADMRYAAERRVPARVAVALTVLGVLIHAAGVITRAVGAGRVPWGNMYEFLTTGAFVAVAVFLLVLIRRDLRFLGTFVVGLAIIMLVAASVAYWTPVGHLVPALQSYWLIIHVSIAVLSSALFTLTFAMSALQLVQSHRQKTVAAGGADKLGFMRLVPSALSLENLSYRINAIAFIGWTFTLMFGAIWAEKAWGRFWGWDTKEVWTFVIWVVYAGYLHARATRGWTGTRAAWLSIVGYLCVVFNFTIVNQFFNGLHSYSGL
>NZ_CP013747.1|WP_058931386.1|3286016_3287774_+|cytochrome-c-biogenesis-protein-ResB
MSERVKANKKSPAPVAAAKTEAALPVLGPVEMLRWAWTQLTSMRTALFLLLLLAVAAVPGSLFPQRPANPSIVTQYIKDNPDYGKLLDTLQLYDVYSSAWFSAIYILLFISLIGCVVPRAIAHYRAMRSQPPRTPKRLSRLPEYGTLVVPADAGLPASDAIRSAAGVLKKRGYRVDVRDDDGARPSLGAERGFAKEVGNLVFHTSLIGVLVSVAVGGLFGYSGQRILVEGDTFVNTLVGYDQFTPGTNFQSSQLQPYSIQLDKFDVLFDRESPGKIGQPIDFNAEVTTRETPDSPAKQEVLKVNDPVTLGGTSIYLTGNGYAPVVTIRDGAGNVAMQGPVVAKLQGDNYYSSLVIKVPDARPEQLGFVGFFLPTAFITEEGVSFSGDPDLFNPQLTLNSYFGDLGLDAGSPQNVFELDVRDLTPLNARNLDAGGITLAPGSTYTLPDGKGSISFDSVKRYVGVDIHHNPGQLYALIFALLAVGGLIVSLYVNRRRVWVRTGTHEDGRTMVEYGLLARGEDHRLAAEAVAVRKLLSEEWQLADSDSGESADGSDSSVTQQTPSRQGDNGADSVTTPAGPTGPKKDQ
>NZ_CP013747.1|WP_058931385.1|3285261_3286017_+|cytochrome-C-biogenesis-protein-ResC
MNSPFAETILNGSLLLAIPVALLAGLVSFLSPCVLPLVPGYLGYVTGLSGVDLEKQKRGRMLAGIGLFVLGFSVIFVLLGGAFGQLGTLITGSQNAWITQLLGLLVILMGVVFMGGFGWLQRDAKIHAKPPAGLWGAPLLGLTFGLGWAPCIGPTYSAVQLLSLSGGSSAAKGALLAFVYSLGLGIPFLLIALAVRRGMGVMSFFRTHRLAIQRIGGGILVVLGLLMASGVWGTWVTELQYWFQTDVKLPI
>NZ_CP013747.1|WP_058931384.1|3284610_3285246_+|TlpA-family-protein-disulfide-reductase
MTDPRATSRAISGTASRRAVLAAGGAALTALTLGLSACAQEDALAKQAKAGDNKNYVAGDGSVTEFTAADRKAAVAINGTLFNGAQIAPADFQGKVTVLNFWFAACAPCRVEAPILEELHQDFKGQGVQFFGVNLRDEKGTAEAFDKTFNLTYPSFDDKNGGVLLAVSGLVPPGAVPTTLVLDKQGRVASRVLGEIQKGTLKALITAAVAE
>NZ_CP013747.1|WP_058932976.1|3283928_3284609_+|histidine-phosphatase-family-protein
MPQSTVHLLRHGEVHNPDRVLYGRLPEFHLSELGREMAQMLADHFAERAARGARIVYLAASPLVRAQETAAPTAEALGLELHTDSRIIEAENYFQGMQVTKAELRKPKHWPHLVNPFRPSWGEPYKAQAARVMSAVEDARLRAIELAAGDYGTDGPEAIMVSHQLPIWATRLSAEGRPLWHDPRKRECTLTSITSLVFDDDGSLLRVEYSEPAAVLLPGAASTPGA
>NZ_CP013747.1|WP_058931383.1|3283177_3283726_-|YceI-family-protein
MTLPADVTTGTWTLDNAHSEIAFTVRHAGISKVRGQFKDAVATLDLADNVADSKISATIQTASFDSGDVNRDGHVRGEDFFDVEAFPEISFVSNGLVAKGNSYELTGDLTIKGVTRPVALETEFNGVAVDPFGMTRAGVSAETTISRKDFGLTWNAVLEAGGVLVSDKVAVNLELAFIAPAA
>NZ_CP013747.1|WP_083510594.1|3282371_3282821_-|hypothetical-protein
MPKAGFSGMFSVTGLPTELKVSYWIWLIGGMLGVLGGLFGVLVTLALFTVAPGLAAVILLLVLVALALAAAQIVLVLKMKEGKEWARLALTIVAGVSLVLAVLGGSVGGGGMGQGIGNNWLGFLISAAATVLMWLPNSQAWFNSVKGRA
>NZ_CP013747.1|WP_058931382.1|3281393_3282191_-|hypothetical-protein
MSTPVPPPVPNEPEPGNQPPAPRYGENSPQFGQPTPPAPQYGQNAPQYGQQTPPAPQYGQNAPQYGQNNPPQFGQPTPPPYGQQPYGQSPYAQYPSEQPQATGSNGVPQLVNISFWLLIGAGVVYVISLLMGIGMLDDPAMRRAFEDAMRSGGATGTEFAFDDFKGILAGSLVVFAIIGAGLYALVAFFVRKGKNWARILGTVFAALSIFGLFGPPSLGTVGTLAGIAAIVLLYLPTAAPYFRKQQPFANPYGAPGTTPGNPYGQ
>NZ_CP013747.1|WP_099093400.1|3280598_3281336_+|redox-sensing-transcriptional-repressor-Rex
MEGIVTSLDSTPQAVQGAETGHSTQPVHGTEAAKQIPPAAVARLTIYLRALNTLLSDGVERVSSESLAEASGVSSSTLRKDLSYVGSYGTRGVGYEVQYLSRHISAALGLTHDWKVAIVGAGNLGKALARYGGFESRGFDVVAIFDADQMVVGNEVGWLRVSDAADMEAVLQRTGANMVVLALPAHVAQAVCDRVVAAGVHSILSFAPVMLQVPEGVNLRKVDMATELQILAYHAQRAQTPDQTA
>NZ_CP013747.1|WP_058931380.1|3280265_3280541_+|glutaredoxin-family-protein
MAKPEVVLITKADCHLCAGARDAVGRVTASLGLGWTEQQVDELPELRERYAEEIPVVLVDGIQRDFWKIDEARLERVLKRAMAQSASGLAE
>NZ_CP013747.1|WP_058931388.1|3291169_3293224_+|helix-turn-helix-transcriptional-regulator
MAADHTQPERELREAGTSAPAGAADMAQQLRGENAAVRELLLALSVGFTLPGPLPGELAHKLESPDSPGLDGVVNRAEASGLLLADGTVVGPVQHALLNGTPTARVHALQRELVGFVSAEGRPFGDLARELARGGLADPRVAAELEAAADKALQHNPGLAAQLYSEALLAGANELRIAARRAQAAAATGDLDAAGRIIDGLLVSSDPPDVRLGVDVAASVWAQRGLLVRSADLYAWLGPANMGRSAPLAAVAMIGSGDRAGAEEAFPAGSAPVSPTLLAVALSQTGKGVMESMERDPHKGLPLLIHASDMLNASGSALPLPDTPGALAALLALHSGESHVADTIIRSAVAARQGGDAAKPRLHLLQAWSAMQQDDAGEARLAINEASKANHWPLVPRDEFLCAALEVGLARRSGDVHDLVMAWERAREAMLHSAVDLYSLLPWGELMIAAARLRETRRVADYLDEAWALLTKLGEPPLWAVPLHWAAVQAALLNKSPADLAPHAAALVRAADYSHMAAVLAAAGKAWVSVLAGRFQATDVENAARGLKMVGMPWEGARLAGHAAAQVDERRDMMRLLACARDLHPQGRTTGPPDGLLPEVRRSAAENNHGAHPDASGLSEREKEVARLVLEGKTYREIGEAIYISPRTAEHHIARMRRRLGAENRSDLLVRLRLALSADHQGPD
>NZ_CP013747.1|WP_058931389.1|3293388_3294534_+|hypothetical-protein
MPTLANQLVQFLMGLFNNPAAAQEFLNDPERSLEGAGLREVCSADVDAAMPVVLDYAPITVNASSFDREYNTGGNTSWTGGNGGAGHTPPPAGGGAGHTPGHDHHDDHAHAVQQLHHVVNNYSYTSTVDDRDTITDQSVNQNIWADGDVNQWFDNEAVIASGDQALAAGDDNNVRDSYNTTDSYNTDNTTDNSTDNSITAGGDVNIGNRDLDVADSFNTDVDLDVADSFNDNSDNSDNSDNSDNSDNSVDNSVKIEDSFQDNSDNSTEDNTVEVNDNSDNSIEDNSTNDNSIEDNSTTDVAIEDSFQDNSDNTTNTEVAVEDSFNDNSQAETTEVEVVDSFNPVEVVVEDSFQDNSTEDNSTNTDVAVDTDVVVEDSEISL
>NZ_CP013747.1|WP_058931391.1|3296681_3298175_+|GTP-binding-protein
MKESISAGVADLIQDALLVYADDPAAAAALETYARRLSEPLRLAVAGMVKAGKSTLLNAIIGEEIAPTDTGECTKIVTWYRYGHTPRITAYPIAGEPHILPLKRVDGRLVFVLGNARAEDMERLVVEWPSPALRELTLIDTPGIASLSEDVSARSTDFLIPVDAPSEADAIIYLMRHMHASDLRFLESFRDTEAGRSGTVNALAVLSRADEIGAGRIDSLLSAGDIADRYRRDHSLRKLALGVVPVAGLLAQSARSMRQSDFESMQVLAGMDRSARERMLLSADRFIRASVPQSLGAEARASLLERFGLFGIRLGVVLIRSGFTEPTPLAHELARRSGLDPLLHLVARQFQARGDALKARTALVGVESLLRSAPREGTGRLAAALERLQANAHEFRELRLLATIRTTGVSLSDELAAEAEMLVGGWGAAPALRMGLAPDAGPDVVLAEARRFLNRWRTVSENPLTERSAVEACRVVMRSCEGVVAECSALQLHPQSA
>NZ_CP013747.1|WP_058932978.1|3298184_3298724_-|hypothetical-protein
MSYSAPAPIVVIPPAPRSVRLARTFWLLSFVAGLAVLIGSFLTLDSHLERLRTVVDQMSPGGGPDAVTTSAAIVFWGSLGALLLVILLEAAALAIFSARRGWSRWLMIPLLAGQVMVMVVAAAFLVPEGDAGSYVVMLWGAQLLLAFLGLVAVFVPSAGGWLKAARIQSAQVRPARTRQ
>NZ_CP013747.1|WP_058931392.1|3298818_3299280_-|hypothetical-protein
MLFRVVLAVAVLVIFVYGLVDVIRTDGRLTRGISKPAWIVVMIVLPVLGAILWLLIGRPRDSAPVRQPRSHPTAPDDDPDFLRNLERRRRNQAEAARLKKLQDDLEAKAKADGGPAGTGQDNDGTRGKGGIGHEEAGDASTGDADTHDTGDVK
>NZ_CP013747.1|WP_058931393.1|3299340_3299697_+|DUF4229-domain-containing-protein
MAFLKYSLIRLALFAPLFVLFMFLKLGAVLSVICAALIAFAVSYLFFQKQRDAAAAAIHGRLSGKAKPLRSESEVADAEAEDSLLDANPDVTIRNSGPKAPETKAPETGTPAPKTPES
>NZ_CP013747.1|WP_058931394.1|3299729_3300611_-|1,4-dihydroxy-2-naphthoate-polyprenyltransferase
MATAAQWIQGARLRTLPAAIAPVLIGTAAAYELDSFRPVNAVLAALVALLLQIGVNYANDYSDGVRGTDEDRVGPLRLVGSGAAQPEHVKYAAFGAFAVAMLFGLALVLITQSWWLILVGVGCVMAAWGYTGGKNPYGYMGLGDVFVFVFFGLVATLGTTYTQAGQVNLPAVIGAIGTGLIACALLMANNVRDIPTDIQAGKKTLAVRLGDKHARESYVLMLAVAILLVVILAPGRPWMLIVLLLIPACLMPAWLMINGRKRKSLIPVLQQTGLINLGYSLLFSLGLVLSHGF
>NZ_CP013747.1|WP_058931395.1|3300690_3301893_-|AMP-binding-protein
MNLGTQTIGPTDIDPVLKALAAALHGEGPAVELSAGPNGELVVGHTETPGCDDAVAVVRTSGSTGAPKATILTVEALAASSMATALALKGEGQWLLALPVQYVAGVQVLVRSLFAGTRPWVMDMSGGFTPEAFTAAALELTDKFRFTSLVPTQLQRLLEAPSPETLAVLRRFNGILLGGAPASAGLLDAAREAGVRVVTTYGSAETCGGCVYDGVPLEGVQVRVADDGRILLGGDTVAAGYVDAPEATDTFFEEDGVRWYRTNDLGTLDADGRLTVLGRADDVIITGGVKVSAAHVQEVLEKSDGVAAAFVAGVPSTEWGQAVAAFIALDAAASGATADSGAAGTPAGDHAVVLKEEWHRRLGLLAPKTVLAAPELLMLPNGKPDRLAMIDRLNALHQGK
>NZ_CP013747.1|WP_058931396.1|3301966_3302920_-|1,4-dihydroxy-2-naphthoyl-CoA-synthase
MSNQIPAKVSDVFDPTRWRTVSGFDDFQDMTYHRQVERDADGTITRDLPTVRIAFNRPEVRNAFRPGTVDELYRAMDHARMTPDVATVLLTGNGPSPKDGGHSFCSGGDQRIRGRDGYRYADGETQETIDPARAGRLHILEVQRLMRTMPKVVIAVVNGWAAGGGHSLHVVSDLTIASRQYGKFKQTDATVGSFDAGYGSALLARQIGQKSAREIFFLAREYSADDMVRMGAVNEAVDHERLEEVALEYAADIARQSPQAIRMLKFAFNLADDGLAGQQVFAGEATRLAYMTDEAVEGKEAFLEKRDPDWSRFPHYF
>NZ_CP013747.1|WP_058931397.1|3303063_3303825_-|CPBP-family-intramembrane-metalloprotease
MAITHRKPPAPQPELYRFSALDFTAVGLYVAAAGLFAVAGELLVPFISQLAPSPAAASYAVNLIFYGSIGILALAAARRVVARDLRVLATRPWFTLLMVPAAVVAMMILTAVVVSAGGGVETSANQAGLQALMQQVPAWLMVPVLVVVGPFVEEYIFRHLLIGKLSRRLNIWLCCALSVVLFAGIHIAGQEAITLSALLPYLAMGGTLVFVYVWTGKNLMFSYFVHAAKNLLAVIFIYAIPPELFEQLQQVQP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013747_4	4.3\|3290881\|30\|NZ_CP013747\|CRT	3290881-3290910	30	NZ_CP023779	Nocardia terpenica strain NC_YFY_NT001 plasmid p_NC_YFY_NT001, complete sequence	63486-63515	6	0.8
NZ_CP013747_4	4.3\|3290881\|30\|NZ_CP013747\|CRT	3290881-3290910	30	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1803351-1803380	7	0.767
NZ_CP013747_4	4.3\|3290881\|30\|NZ_CP013747\|CRT	3290881-3290910	30	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	319271-319300	7	0.767
NZ_CP013747_4	4.3\|3290881\|30\|NZ_CP013747\|CRT	3290881-3290910	30	MN369765	Microbacterium phage Zanella, complete genome	10161-10190	7	0.767

1. spacer 4.3|3290881|30|NZ_CP013747|CRT matches to NZ_CP023779 (Nocardia terpenica strain NC_YFY_NT001 plasmid p_NC_YFY_NT001, complete sequence) position: , mismatch: 6, identity: 0.8

tgcgcccgatccgaccaccgaccctgcgcc	CRISPR spacer
tgcgcccggtgcgaccaccgaccacgccgc	Protospacer
********.* ************ .**  *

2. spacer 4.3|3290881|30|NZ_CP013747|CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.767

tgcgcccgatccgaccaccgaccctgcgcc	CRISPR spacer
ggcccccgatccgacccccgacccgacccg	Protospacer
 ** ************ ******* .* *

3. spacer 4.3|3290881|30|NZ_CP013747|CRT matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 7, identity: 0.767

tgcgcccgatccgaccaccg-accctgcgcc	CRISPR spacer
tgcgcccgatccgaacaccgaaaacagcag-	Protospacer
************** ***** *  * **.

4. spacer 4.3|3290881|30|NZ_CP013747|CRT matches to MN369765 (Microbacterium phage Zanella, complete genome) position: , mismatch: 7, identity: 0.767

tgcgcccgatccgaccaccgaccctgcgcc	CRISPR spacer
cgcggccgatccgaccaccgacgacgcggg	Protospacer
.*** *****************  .***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4326630 : 4374801

Arthrobacter_phage(27.78%)

tail,portal,integrase,protease,capsid,head

attL 4325482:4325521|attR 4327610:4327649

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4325482:4325521	attL	NA	NA	NA	NA
WP_058932154.1\|4326630_4327527_+\|integrase	tyrosine-type recombinase/integrase	A6N1V9	Microbacterium_phage	1.1e-45	45.0
WP_058932155.1\|4327699_4328014_-	hypothetical protein	NA	NA	NA	NA
4327610:4327649	attR	NA	NA	NA	NA
WP_058932157.1\|4328396_4329200_+	hypothetical protein	NA	NA	NA	NA
WP_157769018.1\|4329266_4330103_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_058932159.1\|4330109_4332149_-	hypothetical protein	NA	NA	NA	NA
WP_058932160.1\|4332159_4332486_-	hypothetical protein	NA	NA	NA	NA
WP_058932161.1\|4332478_4333417_-	hypothetical protein	NA	NA	NA	NA
WP_157769069.1\|4333413_4334013_-	hypothetical protein	NA	NA	NA	NA
WP_058932163.1\|4334054_4334270_-	hypothetical protein	NA	NA	NA	NA
WP_058932164.1\|4334285_4335335_-	hypothetical protein	A0A1I9SE47	Arthrobacter_phage	1.6e-43	51.4
WP_058932165.1\|4335331_4336252_-\|tail	tail fiber domain-containing protein	A0A0U4IWQ4	Arthrobacter_phage	5.4e-51	41.3
WP_058932166.1\|4336251_4337403_-	hypothetical protein	A0A0U4IGX9	Arthrobacter_phage	4.1e-96	46.5
WP_058932167.1\|4337393_4338257_-	hypothetical protein	A0A1C9LZA4	Arthrobacter_phage	1.7e-51	44.4
WP_058932168.1\|4338258_4341039_-	hypothetical protein	A0A2H4P9V9	Gordonia_phage	3.0e-44	34.8
WP_058932169.1\|4341227_4341638_-	hypothetical protein	NA	NA	NA	NA
WP_058932170.1\|4341642_4342248_-	hypothetical protein	NA	NA	NA	NA
WP_058932171.1\|4342247_4343276_-	hypothetical protein	NA	NA	NA	NA
WP_058932172.1\|4343272_4343548_-	hypothetical protein	NA	NA	NA	NA
WP_058932173.1\|4343557_4344022_-	hypothetical protein	NA	NA	NA	NA
WP_058932174.1\|4344021_4344816_-	hypothetical protein	NA	NA	NA	NA
WP_058932175.1\|4344815_4345139_-	hypothetical protein	NA	NA	NA	NA
WP_058932176.1\|4345222_4346674_-\|capsid	phage major capsid protein	A0A142F2E2	Mycobacterium_phage	5.7e-39	31.9
WP_083510484.1\|4346810_4347557_-\|head,protease	phage prohead protease	A0A0F7L115	uncultured_marine_virus	4.6e-08	31.3
WP_083510485.1\|4347553_4348852_-\|portal	phage portal protein	A0A2H4PI10	Pseudomonas_phage	4.4e-14	24.3
WP_157769019.1\|4348848_4349013_-	hypothetical protein	NA	NA	NA	NA
WP_058932177.1\|4349026_4350379_-	hypothetical protein	NA	NA	NA	NA
WP_058932178.1\|4350461_4350950_-	hypothetical protein	NA	NA	NA	NA
WP_157769020.1\|4351075_4351411_-	hypothetical protein	NA	NA	NA	NA
WP_058932179.1\|4351519_4352137_-	hypothetical protein	V5R9D8	Arthrobacter_phage	1.4e-71	68.4
WP_058932180.1\|4352139_4353075_-	hypothetical protein	A0A1C9EI32	Gordonia_phage	1.4e-41	40.8
WP_157769021.1\|4353126_4353264_-	hypothetical protein	NA	NA	NA	NA
WP_058932181.1\|4353260_4354061_-	hypothetical protein	NA	NA	NA	NA
WP_058932182.1\|4354057_4354261_-	hypothetical protein	NA	NA	NA	NA
WP_058932183.1\|4354580_4354991_-	hypothetical protein	NA	NA	NA	NA
WP_058932184.1\|4355104_4355542_-	hypothetical protein	NA	NA	NA	NA
WP_058932185.1\|4355534_4356833_-	ParB/RepB/Spo0J family partition protein	A0A1C9EHW0	Gordonia_phage	4.7e-32	45.5
WP_058932186.1\|4356829_4357210_-	hypothetical protein	NA	NA	NA	NA
WP_058932187.1\|4357202_4357403_-	hypothetical protein	NA	NA	NA	NA
WP_058932188.1\|4357399_4357708_-	hypothetical protein	NA	NA	NA	NA
WP_058932189.1\|4357704_4358199_-	hypothetical protein	NA	NA	NA	NA
WP_157769022.1\|4358338_4358551_-	hypothetical protein	A0A0K0MWS9	Gordonia_phage	6.7e-05	42.6
WP_083510486.1\|4358687_4359008_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_058932191.1\|4359256_4359838_+	single-stranded DNA-binding protein	A0A1V0E648	Streptomyces_phage	7.9e-16	46.7
WP_058933072.1\|4360222_4360504_+	hypothetical protein	NA	NA	NA	NA
WP_058932192.1\|4360550_4362233_+	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	4.5e-43	28.5
WP_058932193.1\|4362335_4363316_-	acyl-CoA thioesterase II	NA	NA	NA	NA
WP_058932194.1\|4363379_4364036_+	hypothetical protein	NA	NA	NA	NA
WP_167349865.1\|4364088_4364502_-	globin	NA	NA	NA	NA
WP_058932196.1\|4364545_4365238_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_058932197.1\|4365359_4366352_+	epimerase	NA	NA	NA	NA
WP_058932198.1\|4366450_4366924_-	OsmC family protein	NA	NA	NA	NA
WP_058932199.1\|4366933_4369501_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	9.8e-42	30.3
WP_058932200.1\|4369611_4370628_+	hypothetical protein	NA	NA	NA	NA
WP_058932201.1\|4370705_4371200_+	ribose-5-phosphate isomerase	NA	NA	NA	NA
WP_058932202.1\|4371199_4372120_+	Fpg/Nei family DNA glycosylase	A0A1V0CNR6	Kaumoebavirus	8.7e-09	30.4
WP_058932203.1\|4372561_4373953_+	trigger factor	NA	NA	NA	NA
WP_058933073.1\|4374177_4374801_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.8e-43	50.8

DBSCAN-SWA_2

4955993 : 5022918

Staphylococcus_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058932614.1\|4955993_4956437_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.5e-19	39.4
WP_058932615.1\|4956695_4957784_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_058932616.1\|4957838_4959041_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_167349852.1\|4958998_4959751_-\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_058932619.1\|4962426_4962774_-	DoxX family protein	NA	NA	NA	NA
WP_058933115.1\|4962770_4964660_-	acyl-CoA synthetase	A0A2H4PQM9	Staphylococcus_phage	4.6e-20	27.2
WP_058932620.1\|4964665_4965604_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_058932621.1\|4965600_4966743_-	2,3-dihydroxybiphenyl 1,2-dioxygenase	NA	NA	NA	NA
WP_058932622.1\|4966873_4967572_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_058932623.1\|4968437_4968806_-	death-on-curing protein	NA	NA	NA	NA
WP_157769058.1\|4968802_4968967_-	hypothetical protein	NA	NA	NA	NA
WP_058932624.1\|4969036_4969501_-	hypothetical protein	NA	NA	NA	NA
WP_056343633.1\|4969813_4970017_-	hypothetical protein	NA	NA	NA	NA
WP_058932625.1\|4970416_4970707_+	hypothetical protein	NA	NA	NA	NA
WP_099093482.1\|4971271_4972291_+	biotin synthase BioB	NA	NA	NA	NA
WP_083510618.1\|4972341_4972593_+	hypothetical protein	NA	NA	NA	NA
WP_058932627.1\|4972589_4973948_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	2.5e-12	30.3
WP_058933116.1\|4973956_4975114_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_058932628.1\|4975110_4975788_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_058932629.1\|4977305_4978004_-	maleylpyruvate isomerase family mycothiol-dependent enzyme	NA	NA	NA	NA
WP_058932630.1\|4978170_4979646_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_058932631.1\|4979721_4980822_-	NAD(P)-dependent alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.7e-22	30.5
WP_058932632.1\|4981093_4982044_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_058932633.1\|4982257_4983652_+	aromatic acid/H+ symport family MFS transporter	NA	NA	NA	NA
WP_058932634.1\|4983872_4984784_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_058933117.1\|4984823_4987655_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_058932635.1\|4987716_4988541_-	1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase	NA	NA	NA	NA
WP_058932636.1\|4988543_4990118_-	FCD domain-containing protein	NA	NA	NA	NA
WP_058932637.1\|4990253_4990790_-	benzoate 1,2-dioxygenase small subunit	NA	NA	NA	NA
WP_058932638.1\|4990830_4992213_-	benzoate 1,2-dioxygenase large subunit	NA	NA	NA	NA
WP_058932639.1\|4992552_4993437_+	catechol 1,2-dioxygenase	NA	NA	NA	NA
WP_058932640.1\|4993563_4994664_+	mandelate racemase	NA	NA	NA	NA
WP_058932641.1\|4994688_4994967_+	muconolactone Delta-isomerase	NA	NA	NA	NA
WP_058932642.1\|4995038_4996322_+	benzoate transporter	NA	NA	NA	NA
WP_058932644.1\|4998840_4999629_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.2e-48	42.8
WP_058932645.1\|4999746_4999998_-	DUF1016 family protein	NA	NA	NA	NA
WP_157769059.1\|5000956_5001124_-	hypothetical protein	NA	NA	NA	NA
WP_099093483.1\|5002619_5003141_+	hypothetical protein	NA	NA	NA	NA
WP_157769060.1\|5004042_5004849_-	hypothetical protein	NA	NA	NA	NA
WP_157769061.1\|5006304_5007066_+\|transposase	transposase	NA	NA	NA	NA
WP_157769062.1\|5007403_5009122_-	hypothetical protein	NA	NA	NA	NA
WP_058932649.1\|5009205_5009670_-	hypothetical protein	NA	NA	NA	NA
WP_083510531.1\|5009560_5010325_-	AfsR/SARP family transcriptional regulator	NA	NA	NA	NA
WP_058932650.1\|5011594_5015788_-	TIR domain-containing protein	NA	NA	NA	NA
WP_083510532.1\|5018316_5019738_-	VCBS repeat-containing protein	NA	NA	NA	NA
WP_058932652.1\|5021355_5022918_+\|transposase	IS21 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013747

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection