Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011427 Pantoea vagans strain ND02 chromosome, complete genome 6 crisprs cas3,DEDDh,RT,DinG 0 1 7 0

Results visualization

1. NZ_CP011427
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011427_1 259745-259819 Orphan NA
1 spacers
DEDDh

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011427_2 354347-354451 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011427_3 663979-664068 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011427_4 1316766-1316838 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011427_5 2759458-2759541 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011427_6 2932858-2932947 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011427_1 1.1|259769|27|NZ_CP011427|CRISPRCasFinder 259769-259795 27 MG969411 UNVERIFIED: Salmonella phage GE_vB_MG, complete genome 12556-12582 5 0.815
NZ_CP011427_1 1.1|259769|27|NZ_CP011427|CRISPRCasFinder 259769-259795 27 KM226324 Idiomarinaceae phage Phi1M2-2, complete genome 8427-8453 6 0.778
NZ_CP011427_1 1.1|259769|27|NZ_CP011427|CRISPRCasFinder 259769-259795 27 MN693069 Marine virus AFVG_25M392, complete genome 28377-28403 7 0.741

1. spacer 1.1|259769|27|NZ_CP011427|CRISPRCasFinder matches to MG969411 (UNVERIFIED: Salmonella phage GE_vB_MG, complete genome) position: , mismatch: 5, identity: 0.815

gccaagcagcaaattgaaagaaaaatt	CRISPR spacer
ataaagcagcaaattgaaagagaaatc	Protospacer
.. ******************.****.

2. spacer 1.1|259769|27|NZ_CP011427|CRISPRCasFinder matches to KM226324 (Idiomarinaceae phage Phi1M2-2, complete genome) position: , mismatch: 6, identity: 0.778

gccaagcagcaaattgaaagaaaaatt	CRISPR spacer
tgcaagcagcaaattgagacaaaaaag	Protospacer
  ***************.* *****  

3. spacer 1.1|259769|27|NZ_CP011427|CRISPRCasFinder matches to MN693069 (Marine virus AFVG_25M392, complete genome) position: , mismatch: 7, identity: 0.741

gccaagcagcaaattgaaagaaaaatt	CRISPR spacer
ttatcgcagcaaattgaaagaagaata	Protospacer
 .   *****************.*** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1031942 : 1139938 119 Enterobacteria_phage(22.92%) terminase,head,plate,protease,transposase,integrase,holin,portal,tRNA,capsid,tail attL 1063452:1063470|attR 1103733:1103751
DBSCAN-SWA_2 1321270 : 1327095 6 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_3 1588475 : 1670861 86 Erwinia_phage(48.94%) head,plate,terminase,protease,lysis,integrase,portal,tRNA,capsid,tail attL 1623614:1623636|attR 1658634:1658656
DBSCAN-SWA_4 2112852 : 2161280 61 Cronobacter_phage(21.28%) terminase,head,coat,lysis,integrase,tail attL 2107686:2107707|attR 2169818:2169839
DBSCAN-SWA_5 3010848 : 3018550 9 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_6 3104645 : 3113375 9 Streptococcus_phage(28.57%) NA NA
DBSCAN-SWA_7 3347676 : 3412289 53 uncultured_Caudovirales_phage(22.22%) plate,transposase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage