CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010480	Campylobacter jejuni strain CJ677CC524, complete genome	0 crisprs	cas2,csa3	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

150296 : 245169

100

Campylobacter_phage(32.26%)

protease,tRNA,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002933745.1\|150296_152105_+\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	1.1e-111	36.6
WP_002851726.1\|152101_152620_+	translation initiation factor IF-3	K4F6Y6	Cronobacter_phage	3.1e-11	28.6
WP_002851979.1\|152658_153750_+	DNA adenine methylase	E5ERN5	Ostreococcus_lucimarinus_virus	1.1e-61	40.2
WP_153575710.1\|155823_156273_+	pathogenicity domain protein	NA	NA	NA	NA
WP_002933743.1\|156402_157416_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_002933742.1\|157497_158526_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_002857401.1\|158535_158982_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_072225809.1\|158985_159831_+	acetylglutamate kinase	NA	NA	NA	NA
WP_072225808.1\|159834_161022_+	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	1.2e-39	32.1
WP_002851780.1\|161042_161672_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.8e-21	36.5
WP_002933739.1\|161760_162309_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_072225807.1\|162277_163651_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	4.1e-95	42.5
WP_002851758.1\|163637_164660_-	ribonucleotide-diphosphate reductase subunit beta	A2PYN0	Cyanophage	1.7e-45	33.7
WP_048818659.1\|164673_165084_-	RDD family protein	NA	NA	NA	NA
WP_002933737.1\|165084_165693_-	orotate phosphoribosyltransferase	NA	NA	NA	NA
WP_072225806.1\|165695_166259_-	ribosome recycling factor	NA	NA	NA	NA
WP_002933735.1\|166268_166637_-	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_002851668.1\|166740_167436_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.6e-15	32.5
WP_002851887.1\|167595_168231_+	carbonic anhydrase	NA	NA	NA	NA
WP_002933732.1\|168227_170111_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_002840050.1\|170134_171106_-	iron-sulfur cluster assembly scaffold protein NifU	A0A1B1IT19	uncultured_Mediterranean_phage	1.6e-13	37.6
WP_002933729.1\|171115_172297_-	cysteine desulfurase, NifS family	H7BUW1	unidentified_phage	2.1e-31	37.1
WP_002933727.1\|172474_172876_-	bacteriohemerythrin	NA	NA	NA	NA
WP_002933725.1\|173012_174179_-	hypothetical protein	NA	NA	NA	NA
WP_002777995.1\|174334_174526_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_002851731.1\|174619_174973_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_002933722.1\|177193_178051_+	HDOD domain-containing protein	NA	NA	NA	NA
WP_079264939.1\|178075_178555_+	cysteine permease	NA	NA	NA	NA
WP_002851965.1\|179834_179990_-	highly acidic protein	NA	NA	NA	NA
WP_002933911.1\|180082_180556_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_002889304.1\|180533_180797_+	DUF493 domain-containing protein	NA	NA	NA	NA
WP_072225805.1\|180786_181947_+	hypothetical protein	NA	NA	NA	NA
WP_002933905.1\|181966_182725_-	exodeoxyribonuclease III	E3T4M6	Cafeteria_roenbergensis_virus	2.3e-31	34.9
WP_002933904.1\|182846_184382_+	lipid A/FlgG phosphoethanolamine transferase EptC	NA	NA	NA	NA
WP_002933902.1\|184378_184735_+	diacylglycerol kinase	NA	NA	NA	NA
WP_002861043.1\|184731_184977_+	ArsR family transcriptional regulator	NA	NA	NA	NA
WP_002933900.1\|184966_185974_+	dihydroorotase	NA	NA	NA	NA
WP_002933898.1\|185998_186220_-	hypothetical protein	NA	NA	NA	NA
WP_048818660.1\|186275_186995_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_153953115.1\|187074_187440_-	methyl-accepting chemotaxis protein	A7YG70	Campylobacter_phage	4.2e-15	97.6
WP_002891469.1\|187808_188129_+	hypothetical protein	A7YGK8	Campylobacter_phage	1.7e-52	100.0
WP_002934560.1\|188138_188333_+	hypothetical protein	A7YG72	Campylobacter_phage	9.0e-25	92.2
WP_059113539.1\|188412_188676_+	hypothetical protein	A7YGG4	Campylobacter_phage	1.5e-38	100.0
WP_059111033.1\|188650_188926_+	hypothetical protein	A7YGG4	Campylobacter_phage	3.8e-45	98.9
WP_048818603.1\|188955_189771_-	DNA adenine methylase	A7YGG5	Campylobacter_phage	5.3e-151	99.3
WP_002934182.1\|189872_190814_-\|tail	phage tail protein	A0A219YB01	Aeromonas_phage	2.4e-14	26.9
WP_002789964.1\|190807_190999_-\|tail	tail protein	NA	NA	NA	NA
WP_002789966.1\|190991_191366_-\|tail	tail protein	NA	NA	NA	NA
WP_002934181.1\|191367_193332_-\|tail	phage tail tape measure protein	A7YG97	Campylobacter_phage	1.0e-06	29.6
WP_002870149.1\|193361_193592_+	hypothetical protein	NA	NA	NA	NA
WP_002789979.1\|193699_193936_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_002865794.1\|193946_194462_-\|tail	tail protein	A0A0F7LDZ1	Escherichia_phage	5.8e-10	25.7
WP_002934180.1\|194584_195775_-\|tail	phage tail sheath family protein	A7YGY2	Campylobacter_phage	1.4e-195	97.7
WP_002876309.1\|197013_197388_+\|tail	tail protein	NA	NA	NA	NA
WP_002784520.1\|197380_197572_+\|tail	tail protein	NA	NA	NA	NA
WP_002872707.1\|197565_198543_+\|tail	tail protein	A0A219Y9Y2	Aeromonas_phage	6.2e-13	25.7
WP_002872706.1\|198507_199299_-	hypothetical protein	NA	NA	NA	NA
WP_002872705.1\|199285_199492_-	CJH_07325 family protein	J9SI91	Campylobacter_phage	2.8e-32	100.0
WP_002784523.1\|199613_199898_-	DNA-binding protein	NA	NA	NA	NA
WP_002876312.1\|199991_200663_+	deoxyribonuclease	NA	NA	NA	NA
WP_002873721.1\|200654_200930_-	hypothetical protein	NA	NA	NA	NA
WP_002876315.1\|200976_201426_-	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_002876316.1\|201422_202115_-	hypothetical protein	NA	NA	NA	NA
WP_002784531.1\|202114_202384_-	hypothetical protein	NA	NA	NA	NA
WP_002922653.1\|203400_203886_-	host-nuclease inhibitor protein Gam	A0A2K9VGT9	Faecalibacterium_phage	8.4e-19	33.3
WP_002791419.1\|203992_204334_-	hypothetical protein	NA	NA	NA	NA
WP_002795448.1\|204575_204767_-	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_002806833.1\|204769_205693_-	AAA family ATPase	A0A2H4JAW1	uncultured_Caudovirales_phage	3.9e-09	24.5
WP_002804144.1\|208184_208859_+	LexA family transcriptional regulator	X2KRC9	Campylobacter_phage	9.8e-26	32.1
WP_002804146.1\|208858_209557_+	hypothetical protein	NA	NA	NA	NA
WP_002932489.1\|209634_210525_-	GTPase Era	NA	NA	NA	NA
WP_002877690.1\|210521_211841_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	6.2e-40	28.6
WP_002932490.1\|211837_212380_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_002781628.1\|212379_212823_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_002932491.1\|212835_214056_-	argininosuccinate synthase	NA	NA	NA	NA
WP_002932492.1\|214210_214456_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_002854905.1\|214452_214860_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_002855252.1\|214852_215581_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-25	31.8
WP_002932495.1\|215580_216831_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_059119177.1\|216997_218422_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_059119178.1\|218760_220452_+	potassium-transporting ATPase subunit A	NA	NA	NA	NA
WP_002932498.1\|220461_222507_+	potassium-transporting ATPase subunit KdpB	E4ZFI9	Streptococcus_phage	1.0e-41	27.6
WP_002932499.1\|222508_223117_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA
WP_002932500.1\|223119_225051_+	sensor histidine kinase KdpD	NA	NA	NA	NA
WP_002932502.1\|225045_227019_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_002852327.1\|227172_227403_+	hypothetical protein	NA	NA	NA	NA
WP_002854947.1\|227392_227635_+	hypothetical protein	NA	NA	NA	NA
WP_002852324.1\|227631_228069_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_002932503.1\|228050_229904_+	primosomal protein N'	NA	NA	NA	NA
WP_002851840.1\|231786_232662_+	zinc transporter ZupT	NA	NA	NA	NA
WP_002934116.1\|237633_238143_-	DUF2393 domain-containing protein	NA	NA	NA	NA
WP_002934113.1\|238142_238673_-	DUF2393 domain-containing protein	NA	NA	NA	NA
WP_002861052.1\|238685_239774_-	membrane protein	L7RCW8	Acanthamoeba_polyphaga_moumouvirus	9.1e-05	23.0
WP_002934112.1\|239786_240701_-	branched-chain-amino-acid transaminase	NA	NA	NA	NA
WP_002934111.1\|240877_241084_+	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA
WP_002934104.1\|241080_241536_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_002934102.1\|241535_242627_+	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_002851782.1\|242721_243162_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_002934100.1\|243161_243953_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_002934099.1\|243945_245169_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	8.9e-118	54.7

DBSCAN-SWA_2

641535 : 647499

Campylobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002932033.1\|641535_643326_-	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	1.6e-160	47.7
WP_153953111.1\|644470_644998_+	S24 family peptidase	A7YG70	Campylobacter_phage	3.3e-37	98.7
WP_059113539.1\|645408_645672_+	hypothetical protein	A7YGG4	Campylobacter_phage	1.5e-38	100.0
WP_059111066.1\|645646_645919_+	hypothetical protein	A7YGG4	Campylobacter_phage	5.5e-44	96.7
WP_002801718.1\|645915_646467_-	ImmA/IrrE family metallo-endopeptidase	Q332A2	Clostridium_botulinum_C_phage	2.1e-10	32.7
WP_002934531.1\|647055_647499_+	S24 family peptidase	M5A9D2	Nitratiruptor_phage	2.8e-21	41.5

DBSCAN-SWA_3

1290151 : 1304580

Synechococcus_phage(38.46%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059119200.1\|1290151_1291288_-	class I SAM-dependent methyltransferase	M4QRS6	Synechococcus_phage	4.8e-65	40.7
WP_002922020.1\|1291274_1292006_-	hypothetical protein	E3SJ89	Synechococcus_phage	1.3e-15	26.6
WP_002922022.1\|1292002_1293526_-	hypothetical protein	B2ZYD9	Ralstonia_phage	1.9e-32	27.1
WP_002922023.1\|1293522_1293921_-	HAD-IIIC family phosphatase	A0A2K9L0P7	Tupanvirus	1.2e-10	42.0
WP_002934361.1\|1293975_1294701_-	LPS biosynthesis protein	M1H9H9	Acanthocystis_turfacea_Chlorella_virus	3.9e-52	49.6
WP_002922027.1\|1294697_1295027_-	hypothetical protein	NA	NA	NA	NA
WP_002934357.1\|1295029_1295365_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_002934356.1\|1295357_1296083_-	NTP transferase domain-containing protein	A0A1D8KNV9	Synechococcus_phage	4.2e-30	33.2
WP_002934355.1\|1296076_1296715_-	HAD family phosphatase	A0A1D8KNV9	Synechococcus_phage	4.2e-34	39.1
WP_059110756.1\|1297439_1298642_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_002934350.1\|1298644_1299313_-	NTP transferase domain-containing protein	A0A2K9L821	Tupanvirus	1.7e-06	26.1
WP_002923024.1\|1299300_1299906_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.8e-15	34.4
WP_002934349.1\|1299893_1300913_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	2.7e-59	40.5
WP_002934348.1\|1300988_1301927_-	NAD-dependent epimerase/dehydratase	A0A0F7LC08	uncultured_marine_virus	1.4e-73	46.3
WP_002934399.1\|1302982_1304035_-	NAD-dependent epimerase/dehydratase family protein	M1HKX0	Paramecium_bursaria_Chlorella_virus	5.8e-65	40.2
WP_002858844.1\|1304034_1304580_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D7XFA9	Escherichia_phage	3.7e-15	30.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage