CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010489	Campylobacter jejuni strain CJ677CC530, complete genome	1 crisprs	DEDDh,cas2,csa3	0	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010489_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010489_1

1296365-1296444

Orphan

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010489_1

>merge|NZ_CP010489|1|1296365-1296444|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTACTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NZ_CP010489|1|1|1296365-1296444|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTACTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010489.1\|WP_002932552.1\|1302091_1303276_-\|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl\|CDD\|226092
NZ_CP010489.1\|WP_002868484.1\|1294333_1295332_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP010489.1\|WP_002783833.1\|1293128_1294331_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP010489.1\|WP_002887956.1\|1291632_1292457_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|181416
NZ_CP010489.1\|WP_002932563.1\|1292460_1293132_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP010489.1\|WP_002825806.1\|1298775_1299123_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|223807
NZ_CP010489.1\|WP_002932555.1\|1299539_1300901_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP010489.1\|WP_002932550.1\|1303272_1305342_-\|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226093
NZ_CP010489.1\|WP_153953106.1\|1305840_1305996_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133014
NZ_CP010489.1\|WP_002932561.1\|1295391_1295937_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|223985
NZ_CP010489.1\|WP_002932564.1\|1290135_1291629_-\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654
NZ_CP010489.1\|WP_002932566.1\|1286654_1287995_+\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|377179
NZ_CP010489.1\|WP_002862076.1\|1299123_1299543_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010489.1\|WP_002932567.1\|1285278_1286646_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|176469
NZ_CP010489.1\|WP_002932553.1\|1300897_1302019_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010489.1\|WP_002855339.1\|1295964_1296291_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NZ_CP010489.1\|WP_002779147.1\|1288076_1288301_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|224830
NZ_CP010489.1\|WP_002932557.1\|1296746_1298117_-\|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl\|CDD\|100091
NZ_CP010489.1\|WP_002868488.1\|1298238_1298775_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|181433
NZ_CP010489.1\|WP_002932548.1\|1305338_1305851_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|235498

Protein	Function_ID	Function_description	E-value
NZ_CP010489.1\|WP_002868484.1\|1294333_1295332_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	2.75115e-168
NZ_CP010489.1\|WP_002783833.1\|1293128_1294331_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP010489.1\|WP_002887956.1\|1291632_1292457_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NZ_CP010489.1\|WP_002932563.1\|1292460_1293132_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	1.65613e-85
NZ_CP010489.1\|WP_002825806.1\|1298775_1299123_+\|holo-ACP-synthase	gnl\|CDD\|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	3.71491e-40
NZ_CP010489.1\|WP_002932555.1\|1299539_1300901_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	5.08212e-79
NZ_CP010489.1\|WP_002932550.1\|1303272_1305342_-\|capsular-polysaccharide-biosynthesis-protein	gnl\|CDD\|226093	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP010489.1\|WP_153953106.1\|1305840_1305996_-\|hypothetical-protein	gnl\|CDD\|133014	cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide.	1.63163e-06
NZ_CP010489.1\|WP_002932561.1\|1295391_1295937_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	1.33264e-56
NZ_CP010489.1\|WP_002932564.1\|1290135_1291629_-\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	5.04465e-157
NZ_CP010489.1\|WP_002932566.1\|1286654_1287995_+\|MmgE/PrpD-family-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	7.95823e-118
NZ_CP010489.1\|WP_002932548.1\|1305338_1305851_-\|adenylyl-sulfate-kinase	gnl\|CDD\|235498	PRK05541, PRK05541, adenylylsulfate kinase; Provisional.	3.6023e-101
NZ_CP010489.1\|WP_002932567.1\|1285278_1286646_+\|adenylosuccinate-lyase	gnl\|CDD\|176469	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.	0
NZ_CP010489.1\|WP_002932552.1\|1302091_1303276_-\|capsule-polysaccharide-modification-protein-KpsS	gnl\|CDD\|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP010489.1\|WP_002855339.1\|1295964_1296291_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	8.97235e-38
NZ_CP010489.1\|WP_002779147.1\|1288076_1288301_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.69416e-22
NZ_CP010489.1\|WP_002932557.1\|1296746_1298117_-\|phosphoglucosamine-mutase-PgmL	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP010489.1\|WP_002868488.1\|1298238_1298775_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	4.17927e-91

>NZ_CP010489.1|WP_002855339.1|1295964_1296291_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAEDIKTIDMSEQEYFVKYVIIAATLGERHALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGRV
>NZ_CP010489.1|WP_002932561.1|1295391_1295937_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVVLEALEILDIDKLIIMPTYINPFKQNFSADEKQRFLWVKKLWGHFPKVEICDFETKQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIEIPKNFKDLKTDKKIASSFIRNTLNINEVCEEIKDEVKKYYEKLQKN
>NZ_CP010489.1|WP_002868484.1|1294333_1295332_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLTMAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAATTNLKGILMVDDDERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NZ_CP010489.1|WP_002783833.1|1293128_1294331_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NZ_CP010489.1|WP_002932563.1|1292460_1293132_-|triose-phosphate-isomerase
MIFAANLKCNHTRASFKIYAEILNKTMGAKCDDIIVFPPSVAFLENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEELIGAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYERLIIAYEPIYSIGTGVSAQSTDIAKVLEFLASLTKAPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFIKLIKG
>NZ_CP010489.1|WP_002887956.1|1291632_1292457_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAQLAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NZ_CP010489.1|WP_002932564.1|1290135_1291629_-|hydrogenase-small-subunit
MAKLSNEKLKNILEDRIKKLENSTLKEDKVINEESVKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHETLMAANGTKAEELLEYVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDVNIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYAFIEQNFDENPMPSKDFWKYLEMSFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNINAEKPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKAFEDNITKISSLKAS
>NZ_CP010489.1|WP_002779147.1|1288076_1288301_+|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDTSCVILRSDEAKTIEVNLI
>NZ_CP010489.1|WP_002932566.1|1286654_1287995_+|MmgE/PrpD-family-protein
MFYSEILADFILNIRYENIPDVVVQRAKELMLDSFGTAIAASNEECVLNTFKTFKNLSTEKNTSVWINEQKLDPIYAAMLNGIASHALDFDDTHTEAILHASAILAPLCLSYGFYINKEAQKIIKAFIVGWEIAARVGIASKGTFHKRGFHTTAIAGIFASTSASAILLDLNKEQIINALGLAGSFASGINEFLSNGSNSKVLHIANAIKNGIIIAHFAKNNMSGPLSIFEGRDNIFKCFGIEQECDKTELNKALGEIWQTMQVSIKPYPSCHFAHGLIDCAIALKNDGLKADEIKSICCFVDEVAVSFICDPLEAKYTPNSAYEAKFSMPFLMALGFFDGKITLKSYENLKRKEVLDFAKKITYKKRKSQGFPKYFPGHLEAILQNGNIIQKDVFINKGNFDNPLNFEELKAKFLANAQIYLDNAKANKILDQIINLENLNHFSF
>NZ_CP010489.1|WP_002932567.1|1285278_1286646_+|adenylosuccinate-lyase
MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKAQAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEYVHFGVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQALPITFGHKVAIWLSELERHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLENLGLDVPNISWQPARDRFIELGFVLGNINATFNKIAHEILILSHNEIDEVAEPFGKGQVGSSTMPHKRNPAISENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMFLMLSVVLANMKFALSDLEVKKDKMLKNLNTLNGFVLAERIMFALSDHYGKQHAHEIVYENAMLGIEKQKTFKEVLLADKRVSKVLKEKEIDALLDATTYVGYAPKLVDEFLAKIKNSAILK
>NZ_CP010489.1|WP_002932557.1|1296746_1298117_-|phosphoglucosamine-mutase-PgmL
MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILSLYVKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIEPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKNIPSPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKFVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESTVFSLFNEIKARLKN
>NZ_CP010489.1|WP_002868488.1|1298238_1298775_+|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAKTDKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NZ_CP010489.1|WP_002825806.1|1298775_1299123_+|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSISHDNGFAIAIVAIV
>NZ_CP010489.1|WP_002862076.1|1299123_1299543_-|hypothetical-protein
MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK
>NZ_CP010489.1|WP_002932555.1|1299539_1300901_-|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHVVIEVDEAMTFITADVIFRTIMSSKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRAKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGAIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSKRKL
>NZ_CP010489.1|WP_002932553.1|1300897_1302019_-|hypothetical-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKTDLSKIEKNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKIGTIQERIKLFANTIVDKLKQNESKQDYELILVAHSVGTIVCIEVLECILRQNLDLSLLRKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NZ_CP010489.1|WP_002932552.1|1302091_1303276_-|capsule-polysaccharide-modification-protein-KpsS
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAMKMKKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK
>NZ_CP010489.1|WP_002932550.1|1303272_1305342_-|capsular-polysaccharide-biosynthesis-protein
MKYYSTSKKLIANVRNFYIISLYKKNLKINKDDLFFGWGRKKSGLKAMNFAKKYKTKFILLEDGFIRSLNLGVENSPSFSIIKDDIGIYYDATMPSKLENLLNAYEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDDYFQKDEKRVLIITQTANDASLEFGLAKDFKTLDMIKDAIKENPKSKIYIKTHPDVLSGKKQSDLDLNSLPKECILITENFNPIALLEFFDKVYTKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRIRKRNLEEVFYAAYILYSEYFNPYLNQKSNIFDTIQTLAKYKDIEKANSNRLFMLGFTLWKRHFIKPFFKAKNNEIIFLNSLKSLAGYKLKENDKFFIWGKKYDENTLKNLLLTKAKEQNLTNFSPKVSLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKPSKLEELLQNEIFDENILNRAKNIIKILLENRFSKYNGLKHEDLKINAKIGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRSKNQDAYIIFKPHPDVLSGNRVGLKDETRILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKHKCKRRTRKLSPEELVAGALITYPRYINPKTKTLCEIEVCLDIMLNLQKDYFSKKHIKLAIDFKTFMLRKIRRFYEFLAKK
>NZ_CP010489.1|WP_002932548.1|1305338_1305851_-|adenylyl-sulfate-kinase
MINSPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDELREILGHYAYDRQGRIDMALKRAKFAKFLNDQGMIVIVTTISMFNEIYDYNRKQLKNYYEIYIECDMHELMQRDQKGLYTKALNKEIDNVVGVDIEFDKPGADLVINNSCRNNLEEKVELIIKKLAL
>NZ_CP010489.1|WP_153953106.1|1305840_1305996_-|hypothetical-protein
MIYDNKNFENMYMTSFLQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIDK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010489_1	1.1\|1296388\|34\|NZ_CP010489\|CRISPRCasFinder	1296388-1296421	34	MH752385	Bacillus phage Ray17, complete genome	8509-8542	10	0.706

1. spacer 1.1|1296388|34|NZ_CP010489|CRISPRCasFinder matches to MH752385 (Bacillus phage Ray17, complete genome) position: , mismatch: 10, identity: 0.706

ttttttagctttatactcagccttactcatataa	CRISPR spacer
cttacaagctttatactcagccttattgatcgtt	Protospacer
.** . *******************.* **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

148729 : 246398

103

Campylobacter_phage(28.12%)

protease,tail,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002933745.1\|148729_150538_+\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	1.1e-111	36.6
WP_002851726.1\|150534_151053_+	translation initiation factor IF-3	K4F6Y6	Cronobacter_phage	3.1e-11	28.6
WP_002851979.1\|151091_152183_+	DNA adenine methylase	E5ERN5	Ostreococcus_lucimarinus_virus	1.1e-61	40.2
WP_153575710.1\|154256_154706_+	pathogenicity domain protein	NA	NA	NA	NA
WP_002933743.1\|154835_155849_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_002933742.1\|155930_156959_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_002857401.1\|156968_157415_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_072225809.1\|157418_158264_+	acetylglutamate kinase	NA	NA	NA	NA
WP_072225808.1\|158267_159455_+	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	1.2e-39	32.1
WP_002851780.1\|159475_160105_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.8e-21	36.5
WP_002933739.1\|160193_160742_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_072225807.1\|160710_162084_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	4.1e-95	42.5
WP_002851758.1\|162070_163093_-	ribonucleotide-diphosphate reductase subunit beta	A2PYN0	Cyanophage	1.7e-45	33.7
WP_048818659.1\|163106_163517_-	RDD family protein	NA	NA	NA	NA
WP_002933737.1\|163517_164126_-	orotate phosphoribosyltransferase	NA	NA	NA	NA
WP_072225806.1\|164128_164692_-	ribosome recycling factor	NA	NA	NA	NA
WP_002933735.1\|164701_165070_-	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_002851668.1\|165173_165869_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.6e-15	32.5
WP_002851887.1\|166028_166664_+	carbonic anhydrase	NA	NA	NA	NA
WP_002933732.1\|166660_168544_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_002840050.1\|168567_169539_-	iron-sulfur cluster assembly scaffold protein NifU	A0A1B1IT19	uncultured_Mediterranean_phage	1.6e-13	37.6
WP_002933729.1\|169548_170730_-	cysteine desulfurase, NifS family	H7BUW1	unidentified_phage	2.1e-31	37.1
WP_002933727.1\|170907_171309_-	bacteriohemerythrin	NA	NA	NA	NA
WP_002933725.1\|171445_172612_-	hypothetical protein	NA	NA	NA	NA
WP_002777995.1\|172767_172959_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_002851731.1\|173052_173406_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_002933722.1\|175626_176484_+	HDOD domain-containing protein	NA	NA	NA	NA
WP_079264939.1\|176508_176988_+	cysteine permease	NA	NA	NA	NA
WP_002851965.1\|178267_178423_-	highly acidic protein	NA	NA	NA	NA
WP_002933911.1\|178515_178989_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_002889304.1\|178966_179230_+	DUF493 domain-containing protein	NA	NA	NA	NA
WP_072225805.1\|179219_180380_+	hypothetical protein	NA	NA	NA	NA
WP_002933905.1\|180399_181158_-	exodeoxyribonuclease III	E3T4M6	Cafeteria_roenbergensis_virus	2.3e-31	34.9
WP_002933904.1\|181279_182815_+	lipid A/FlgG phosphoethanolamine transferase EptC	NA	NA	NA	NA
WP_002933902.1\|182811_183168_+	diacylglycerol kinase	NA	NA	NA	NA
WP_002861043.1\|183164_183410_+	ArsR family transcriptional regulator	NA	NA	NA	NA
WP_002933900.1\|183399_184407_+	dihydroorotase	NA	NA	NA	NA
WP_002933898.1\|184431_184653_-	hypothetical protein	NA	NA	NA	NA
WP_048818660.1\|184708_185428_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_002934459.1\|185689_186319_+	LexA family transcriptional regulator	A7YG70	Campylobacter_phage	2.4e-58	98.2
WP_002891469.1\|186526_186847_+	hypothetical protein	A7YGK8	Campylobacter_phage	1.7e-52	100.0
WP_002934560.1\|186856_187051_+	hypothetical protein	A7YG72	Campylobacter_phage	9.0e-25	92.2
WP_002865289.1\|187130_187418_+	hypothetical protein	A7YGG4	Campylobacter_phage	1.9e-47	100.0
WP_002934182.1\|188354_189296_-\|tail	phage tail protein	A0A219YB01	Aeromonas_phage	2.4e-14	26.9
WP_002789964.1\|189289_189481_-\|tail	tail protein	NA	NA	NA	NA
WP_002789966.1\|189473_189848_-\|tail	tail protein	NA	NA	NA	NA
WP_002934181.1\|189849_191814_-\|tail	phage tail tape measure protein	A7YG97	Campylobacter_phage	1.0e-06	29.6
WP_002870149.1\|191843_192074_+	hypothetical protein	NA	NA	NA	NA
WP_002789979.1\|192181_192418_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_002865794.1\|192428_192944_-\|tail	tail protein	A0A0F7LDZ1	Escherichia_phage	5.8e-10	25.7
WP_002934180.1\|193066_194257_-\|tail	phage tail sheath family protein	A7YGY2	Campylobacter_phage	1.4e-195	97.7
WP_002876309.1\|195495_195870_+\|tail	tail protein	NA	NA	NA	NA
WP_002784520.1\|195862_196054_+\|tail	tail protein	NA	NA	NA	NA
WP_002872707.1\|196047_197025_+\|tail	tail protein	A0A219Y9Y2	Aeromonas_phage	6.2e-13	25.7
WP_002872706.1\|196989_197781_-	hypothetical protein	NA	NA	NA	NA
WP_002872705.1\|197767_197974_-	CJH_07325 family protein	J9SI91	Campylobacter_phage	2.8e-32	100.0
WP_002784523.1\|198095_198380_-	DNA-binding protein	NA	NA	NA	NA
WP_002876312.1\|198473_199145_+	deoxyribonuclease	NA	NA	NA	NA
WP_002873721.1\|199136_199412_-	hypothetical protein	NA	NA	NA	NA
WP_002876315.1\|199458_199908_-	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_002876316.1\|199904_200597_-	hypothetical protein	NA	NA	NA	NA
WP_002784531.1\|200596_200866_-	hypothetical protein	NA	NA	NA	NA
WP_002922653.1\|201882_202368_-	host-nuclease inhibitor protein Gam	A0A2K9VGT9	Faecalibacterium_phage	8.4e-19	33.3
WP_002791419.1\|202474_202816_-	hypothetical protein	NA	NA	NA	NA
WP_002795448.1\|203057_203249_-	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_002806833.1\|203251_204175_-	AAA family ATPase	A0A2H4JAW1	uncultured_Caudovirales_phage	3.9e-09	24.5
WP_002804144.1\|206666_207341_+	LexA family transcriptional regulator	X2KRC9	Campylobacter_phage	9.8e-26	32.1
WP_002804146.1\|207340_208039_+	hypothetical protein	NA	NA	NA	NA
WP_002932489.1\|208116_209007_-	GTPase Era	NA	NA	NA	NA
WP_002877690.1\|209003_210323_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	6.2e-40	28.6
WP_002932490.1\|210319_210862_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_002781628.1\|210861_211305_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_002932491.1\|211317_212538_-	argininosuccinate synthase	NA	NA	NA	NA
WP_002932492.1\|212692_212938_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_002854905.1\|212934_213342_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_002855252.1\|213334_214063_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-25	31.8
WP_002932495.1\|214062_215313_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_002932496.1\|215479_216904_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_002932497.1\|217242_218934_+	potassium-transporting ATPase subunit A	NA	NA	NA	NA
WP_002932498.1\|218943_220989_+	potassium-transporting ATPase subunit KdpB	E4ZFI9	Streptococcus_phage	1.0e-41	27.6
WP_002932499.1\|220990_221599_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA
WP_002932500.1\|221601_223533_+	sensor histidine kinase KdpD	NA	NA	NA	NA
WP_002932502.1\|223527_225501_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_002852327.1\|225654_225885_+	hypothetical protein	NA	NA	NA	NA
WP_002854947.1\|225874_226117_+	hypothetical protein	NA	NA	NA	NA
WP_002852324.1\|226113_226551_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_002932503.1\|226532_228386_+	primosomal protein N'	NA	NA	NA	NA
WP_052803034.1\|228677_228962_+	hypothetical protein	A7YGG4	Campylobacter_phage	2.7e-46	97.9
WP_002801718.1\|228958_229510_-	ImmA/IrrE family metallo-endopeptidase	Q332A2	Clostridium_botulinum_C_phage	2.1e-10	32.7
WP_002934531.1\|230098_230542_+	S24 family peptidase	M5A9D2	Nitratiruptor_phage	2.8e-21	41.5
WP_059111009.1\|231675_233091_-	hypothetical protein	NA	NA	NA	NA
WP_002851840.1\|233259_234135_+	zinc transporter ZupT	NA	NA	NA	NA
WP_059111012.1\|237425_238739_+	hypothetical protein	NA	NA	NA	NA
WP_002934116.1\|238862_239372_-	DUF2393 domain-containing protein	NA	NA	NA	NA
WP_002934113.1\|239371_239902_-	DUF2393 domain-containing protein	NA	NA	NA	NA
WP_059111328.1\|239914_241003_-	hypothetical protein	L7RCW8	Acanthamoeba_polyphaga_moumouvirus	6.9e-05	23.0
WP_002934112.1\|241015_241930_-	branched-chain-amino-acid transaminase	NA	NA	NA	NA
WP_002934111.1\|242106_242313_+	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA
WP_002934104.1\|242309_242765_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_002934102.1\|242764_243856_+	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_002851782.1\|243950_244391_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_002934100.1\|244390_245182_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_002934099.1\|245174_246398_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	8.9e-118	54.7

DBSCAN-SWA_2

463729 : 472147

Campylobacter_phage(88.89%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002875076.1\|463729_464764_+	hypothetical protein	A0A2I7SBK1	Pseudomonas_phage	2.6e-17	30.5
WP_002861675.1\|464763_465168_+	hypothetical protein	NA	NA	NA	NA
WP_002799287.1\|465148_465343_+	hypothetical protein	NA	NA	NA	NA
WP_059111129.1\|465345_467988_+	hypothetical protein	X2KLU0	Campylobacter_phage	7.5e-45	66.2
WP_002875080.1\|467989_468439_+	hypothetical protein	X2KQT3	Campylobacter_phage	3.0e-79	100.0
WP_059111130.1\|468451_469087_+	DUF4376 domain-containing protein	X2KRD7	Campylobacter_phage	5.0e-96	99.5
WP_059111131.1\|469083_469467_+	hypothetical protein	X2KXD5	Campylobacter_phage	7.0e-61	99.2
WP_059111132.1\|469459_469834_+	DUF1353 domain-containing protein	X2KPN9	Campylobacter_phage	8.3e-67	96.8
WP_059111133.1\|471130_471607_+	hypothetical protein	X2KRD2	Campylobacter_phage	1.4e-63	75.3
WP_059111152.1\|471612_472032_+	hypothetical protein	X2KX19	Campylobacter_phage	2.2e-44	86.9
WP_002796174.1\|471949_472147_+	hypothetical protein	X2KPN2	Campylobacter_phage	3.2e-25	95.4

DBSCAN-SWA_3

1317294 : 1330600

Synechococcus_phage(38.46%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002922020.1\|1317294_1318026_-	hypothetical protein	E3SJ89	Synechococcus_phage	1.3e-15	26.6
WP_002922022.1\|1318022_1319546_-	hypothetical protein	B2ZYD9	Ralstonia_phage	1.9e-32	27.1
WP_002922023.1\|1319542_1319941_-	HAD-IIIC family phosphatase	A0A2K9L0P7	Tupanvirus	1.2e-10	42.0
WP_002934361.1\|1319995_1320721_-	LPS biosynthesis protein	M1H9H9	Acanthocystis_turfacea_Chlorella_virus	3.9e-52	49.6
WP_002922027.1\|1320717_1321047_-	hypothetical protein	NA	NA	NA	NA
WP_002934357.1\|1321049_1321385_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_002934356.1\|1321377_1322103_-	NTP transferase domain-containing protein	A0A1D8KNV9	Synechococcus_phage	4.2e-30	33.2
WP_002934355.1\|1322096_1322735_-	HAD family phosphatase	A0A1D8KNV9	Synechococcus_phage	4.2e-34	39.1
WP_059110756.1\|1323460_1324663_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_002934350.1\|1324665_1325334_-	NTP transferase domain-containing protein	A0A2K9L821	Tupanvirus	1.7e-06	26.1
WP_002923024.1\|1325321_1325927_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.8e-15	34.4
WP_002934349.1\|1325914_1326934_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	2.7e-59	40.5
WP_002934348.1\|1327009_1327948_-	NAD-dependent epimerase/dehydratase	A0A0F7LC08	uncultured_marine_virus	1.4e-73	46.3
WP_052803031.1\|1327971_1329006_-	GDP-mannose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	4.0e-143	72.8
WP_002934399.1\|1329002_1330055_-	NAD-dependent epimerase/dehydratase family protein	M1HKX0	Paramecium_bursaria_Chlorella_virus	5.8e-65	40.2
WP_002858844.1\|1330054_1330600_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D7XFA9	Escherichia_phage	3.7e-15	30.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage