CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010458	Campylobacter jejuni strain CJ677CC533, complete genome	1 crisprs	DEDDh,cas2,csa3	0	1	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010458_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010458_1

1281627-1281706

Orphan

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010458_1

>merge|NZ_CP010458|1|1281627-1281706|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTACTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NZ_CP010458|1|1|1281627-1281706|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTACTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010458.1\|WP_002932548.1\|1290600_1291113_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|235498
NZ_CP010458.1\|WP_002887956.1\|1276894_1277719_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|181416
NZ_CP010458.1\|WP_002783833.1\|1278390_1279593_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP010458.1\|WP_002855339.1\|1281226_1281553_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NZ_CP010458.1\|WP_002932550.1\|1288534_1290604_-\|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226093
NZ_CP010458.1\|WP_002932561.1\|1280653_1281199_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|223985
NZ_CP010458.1\|WP_002932555.1\|1284801_1286163_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP010458.1\|WP_002932553.1\|1286159_1287281_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010458.1\|WP_002862076.1\|1284385_1284805_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010458.1\|WP_002868484.1\|1279595_1280594_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP010458.1\|WP_002779147.1\|1273338_1273563_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|224830
NZ_CP010458.1\|WP_002932567.1\|1270540_1271908_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|176469
NZ_CP010458.1\|WP_002932557.1\|1282008_1283379_-\|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl\|CDD\|100091
NZ_CP010458.1\|WP_002868488.1\|1283500_1284037_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|181433
NZ_CP010458.1\|WP_002932552.1\|1287353_1288538_-\|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl\|CDD\|226092
NZ_CP010458.1\|WP_002825806.1\|1284037_1284385_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|223807
NZ_CP010458.1\|WP_002932566.1\|1271916_1273257_+\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|377179
NZ_CP010458.1\|WP_002932563.1\|1277722_1278394_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP010458.1\|WP_153953106.1\|1291102_1291258_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133014
NZ_CP010458.1\|WP_002932564.1\|1275397_1276891_-\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654

Protein	Function_ID	Function_description	E-value
NZ_CP010458.1\|WP_002932548.1\|1290600_1291113_-\|adenylyl-sulfate-kinase	gnl\|CDD\|235498	PRK05541, PRK05541, adenylylsulfate kinase; Provisional.	3.6023e-101
NZ_CP010458.1\|WP_002887956.1\|1276894_1277719_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NZ_CP010458.1\|WP_002783833.1\|1278390_1279593_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP010458.1\|WP_002855339.1\|1281226_1281553_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	8.97235e-38
NZ_CP010458.1\|WP_002932550.1\|1288534_1290604_-\|capsular-polysaccharide-biosynthesis-protein	gnl\|CDD\|226093	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP010458.1\|WP_002932561.1\|1280653_1281199_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	1.33264e-56
NZ_CP010458.1\|WP_002932555.1\|1284801_1286163_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	5.08212e-79
NZ_CP010458.1\|WP_002868484.1\|1279595_1280594_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	2.75115e-168
NZ_CP010458.1\|WP_002779147.1\|1273338_1273563_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.69416e-22
NZ_CP010458.1\|WP_002932567.1\|1270540_1271908_+\|adenylosuccinate-lyase	gnl\|CDD\|176469	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.	0
NZ_CP010458.1\|WP_002932557.1\|1282008_1283379_-\|phosphoglucosamine-mutase-PgmL	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP010458.1\|WP_002868488.1\|1283500_1284037_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	4.17927e-91
NZ_CP010458.1\|WP_002932552.1\|1287353_1288538_-\|capsule-polysaccharide-modification-protein-KpsS	gnl\|CDD\|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP010458.1\|WP_002825806.1\|1284037_1284385_+\|holo-ACP-synthase	gnl\|CDD\|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	3.71491e-40
NZ_CP010458.1\|WP_002932566.1\|1271916_1273257_+\|MmgE/PrpD-family-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	7.95823e-118
NZ_CP010458.1\|WP_002932563.1\|1277722_1278394_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	1.65613e-85
NZ_CP010458.1\|WP_153953106.1\|1291102_1291258_-\|hypothetical-protein	gnl\|CDD\|133014	cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide.	1.63163e-06
NZ_CP010458.1\|WP_002932564.1\|1275397_1276891_-\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	5.04465e-157

>NZ_CP010458.1|WP_002855339.1|1281226_1281553_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAEDIKTIDMSEQEYFVKYVIIAATLGERHALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGRV
>NZ_CP010458.1|WP_002932561.1|1280653_1281199_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVVLEALEILDIDKLIIMPTYINPFKQNFSADEKQRFLWVKKLWGHFPKVEICDFETKQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIEIPKNFKDLKTDKKIASSFIRNTLNINEVCEEIKDEVKKYYEKLQKN
>NZ_CP010458.1|WP_002868484.1|1279595_1280594_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLTMAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAATTNLKGILMVDDDERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NZ_CP010458.1|WP_002783833.1|1278390_1279593_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NZ_CP010458.1|WP_002932563.1|1277722_1278394_-|triose-phosphate-isomerase
MIFAANLKCNHTRASFKIYAEILNKTMGAKCDDIIVFPPSVAFLENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEELIGAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYERLIIAYEPIYSIGTGVSAQSTDIAKVLEFLASLTKAPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFIKLIKG
>NZ_CP010458.1|WP_002887956.1|1276894_1277719_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAQLAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NZ_CP010458.1|WP_002932564.1|1275397_1276891_-|hydrogenase-small-subunit
MAKLSNEKLKNILEDRIKKLENSTLKEDKVINEESVKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHETLMAANGTKAEELLEYVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDVNIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYAFIEQNFDENPMPSKDFWKYLEMSFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNINAEKPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKAFEDNITKISSLKAS
>NZ_CP010458.1|WP_002779147.1|1273338_1273563_+|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDTSCVILRSDEAKTIEVNLI
>NZ_CP010458.1|WP_002932566.1|1271916_1273257_+|MmgE/PrpD-family-protein
MFYSEILADFILNIRYENIPDVVVQRAKELMLDSFGTAIAASNEECVLNTFKTFKNLSTEKNTSVWINEQKLDPIYAAMLNGIASHALDFDDTHTEAILHASAILAPLCLSYGFYINKEAQKIIKAFIVGWEIAARVGIASKGTFHKRGFHTTAIAGIFASTSASAILLDLNKEQIINALGLAGSFASGINEFLSNGSNSKVLHIANAIKNGIIIAHFAKNNMSGPLSIFEGRDNIFKCFGIEQECDKTELNKALGEIWQTMQVSIKPYPSCHFAHGLIDCAIALKNDGLKADEIKSICCFVDEVAVSFICDPLEAKYTPNSAYEAKFSMPFLMALGFFDGKITLKSYENLKRKEVLDFAKKITYKKRKSQGFPKYFPGHLEAILQNGNIIQKDVFINKGNFDNPLNFEELKAKFLANAQIYLDNAKANKILDQIINLENLNHFSF
>NZ_CP010458.1|WP_002932567.1|1270540_1271908_+|adenylosuccinate-lyase
MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKAQAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEYVHFGVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQALPITFGHKVAIWLSELERHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLENLGLDVPNISWQPARDRFIELGFVLGNINATFNKIAHEILILSHNEIDEVAEPFGKGQVGSSTMPHKRNPAISENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMFLMLSVVLANMKFALSDLEVKKDKMLKNLNTLNGFVLAERIMFALSDHYGKQHAHEIVYENAMLGIEKQKTFKEVLLADKRVSKVLKEKEIDALLDATTYVGYAPKLVDEFLAKIKNSAILK
>NZ_CP010458.1|WP_002932557.1|1282008_1283379_-|phosphoglucosamine-mutase-PgmL
MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILSLYVKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIEPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKNIPSPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKFVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESTVFSLFNEIKARLKN
>NZ_CP010458.1|WP_002868488.1|1283500_1284037_+|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAKTDKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NZ_CP010458.1|WP_002825806.1|1284037_1284385_+|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSISHDNGFAIAIVAIV
>NZ_CP010458.1|WP_002862076.1|1284385_1284805_-|hypothetical-protein
MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK
>NZ_CP010458.1|WP_002932555.1|1284801_1286163_-|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHVVIEVDEAMTFITADVIFRTIMSSKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRAKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGAIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSKRKL
>NZ_CP010458.1|WP_002932553.1|1286159_1287281_-|hypothetical-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKTDLSKIEKNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKIGTIQERIKLFANTIVDKLKQNESKQDYELILVAHSVGTIVCIEVLECILRQNLDLSLLRKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NZ_CP010458.1|WP_002932552.1|1287353_1288538_-|capsule-polysaccharide-modification-protein-KpsS
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAMKMKKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK
>NZ_CP010458.1|WP_002932550.1|1288534_1290604_-|capsular-polysaccharide-biosynthesis-protein
MKYYSTSKKLIANVRNFYIISLYKKNLKINKDDLFFGWGRKKSGLKAMNFAKKYKTKFILLEDGFIRSLNLGVENSPSFSIIKDDIGIYYDATMPSKLENLLNAYEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDDYFQKDEKRVLIITQTANDASLEFGLAKDFKTLDMIKDAIKENPKSKIYIKTHPDVLSGKKQSDLDLNSLPKECILITENFNPIALLEFFDKVYTKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRIRKRNLEEVFYAAYILYSEYFNPYLNQKSNIFDTIQTLAKYKDIEKANSNRLFMLGFTLWKRHFIKPFFKAKNNEIIFLNSLKSLAGYKLKENDKFFIWGKKYDENTLKNLLLTKAKEQNLTNFSPKVSLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKPSKLEELLQNEIFDENILNRAKNIIKILLENRFSKYNGLKHEDLKINAKIGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRSKNQDAYIIFKPHPDVLSGNRVGLKDETRILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKHKCKRRTRKLSPEELVAGALITYPRYINPKTKTLCEIEVCLDIMLNLQKDYFSKKHIKLAIDFKTFMLRKIRRFYEFLAKK
>NZ_CP010458.1|WP_002932548.1|1290600_1291113_-|adenylyl-sulfate-kinase
MINSPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDELREILGHYAYDRQGRIDMALKRAKFAKFLNDQGMIVIVTTISMFNEIYDYNRKQLKNYYEIYIECDMHELMQRDQKGLYTKALNKEIDNVVGVDIEFDKPGADLVINNSCRNNLEEKVELIIKKLAL
>NZ_CP010458.1|WP_153953106.1|1291102_1291258_-|hypothetical-protein
MIYDNKNFENMYMTSFLQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIDK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010458_1	1.1\|1281650\|34\|NZ_CP010458\|CRISPRCasFinder	1281650-1281683	34	MH752385	Bacillus phage Ray17, complete genome	8509-8542	10	0.706

1. spacer 1.1|1281650|34|NZ_CP010458|CRISPRCasFinder matches to MH752385 (Bacillus phage Ray17, complete genome) position: , mismatch: 10, identity: 0.706

ttttttagctttatactcagccttactcatataa	CRISPR spacer
cttacaagctttatactcagccttattgatcgtt	Protospacer
.** . *******************.* **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

530674 : 570427

uncultured_Caudovirales_phage(13.33%)

protease,tRNA,tail,terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002854803.1\|530674_532426_-\|tRNA	aspartate--tRNA ligase	A0A1V0SIS0	Klosneuvirus	1.2e-09	29.9
WP_002932008.1\|532516_533377_+	NAD(+) kinase	NA	NA	NA	NA
WP_002932011.1\|533376_534900_+	AAA family ATPase	NA	NA	NA	NA
WP_002932013.1\|535002_536247_+	bile resistance response regulator CbrR	NA	NA	NA	NA
WP_002932016.1\|536237_537053_+	TatD family hydrolase	NA	NA	NA	NA
WP_002852087.1\|537052_538171_+	lytic transglycosylase domain-containing protein	A0A218M4G6	Pasteurella_phage	1.6e-09	34.1
WP_002932024.1\|538130_538958_+	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	9.6e-23	50.0
WP_002932029.1\|538963_539452_+	HAD-IIIA family hydrolase	A0A140XBD6	Dickeya_phage	1.9e-15	41.2
WP_002876713.1\|539442_539958_+	hypothetical protein	NA	NA	NA	NA
WP_002859586.1\|539939_540401_+	organic solvent tolerance protein OstA	NA	NA	NA	NA
WP_002876714.1\|540397_540994_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_002857018.1\|540990_541485_+	membrane protein	NA	NA	NA	NA
WP_002932032.1\|541485_543291_+	penicillin-binding protein 2	NA	NA	NA	NA
WP_002932033.1\|543410_545201_-	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	1.6e-160	47.7
WP_002922136.1\|546178_546568_-	DUF882 domain-containing protein	A0A1X9Q0V8	Human_gokushovirus	2.2e-22	46.7
WP_002784501.1\|546716_547151_+	hypothetical protein	NA	NA	NA	NA
WP_002876306.1\|547152_547968_+	hypothetical protein	A0A2H4JAW3	uncultured_Caudovirales_phage	2.9e-24	48.4
WP_002875114.1\|547970_548498_+	hypothetical protein	NA	NA	NA	NA
WP_059111006.1\|548500_549478_+	hypothetical protein	R9TRN2	Rhizobium_phage	1.6e-05	23.4
WP_002855185.1\|549593_550052_+	DUF1320 domain-containing protein	NA	NA	NA	NA
WP_002803360.1\|550044_550644_+	DUF1804 family protein	NA	NA	NA	NA
WP_059111008.1\|550643_552314_+\|terminase	phage terminase large subunit	H1ZZE1	Pseudomonas_virus	5.2e-92	41.2
WP_002876309.1\|555060_555435_+\|tail	tail protein	NA	NA	NA	NA
WP_002784520.1\|555427_555619_+\|tail	tail protein	NA	NA	NA	NA
WP_002872707.1\|555612_556590_+\|tail	tail protein	A0A219Y9Y2	Aeromonas_phage	6.2e-13	25.7
WP_002872706.1\|556554_557346_-	hypothetical protein	NA	NA	NA	NA
WP_002872705.1\|557332_557539_-	CJH_07325 family protein	J9SI91	Campylobacter_phage	2.8e-32	100.0
WP_002784523.1\|557660_557945_-	DNA-binding protein	NA	NA	NA	NA
WP_002876312.1\|558038_558710_+	deoxyribonuclease	NA	NA	NA	NA
WP_002873721.1\|558701_558977_-	hypothetical protein	NA	NA	NA	NA
WP_002876315.1\|559023_559473_-	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_002876316.1\|559469_560162_-	hypothetical protein	NA	NA	NA	NA
WP_002784531.1\|560161_560431_-	hypothetical protein	NA	NA	NA	NA
WP_002922653.1\|561447_561933_-	host-nuclease inhibitor protein Gam	A0A2K9VGT9	Faecalibacterium_phage	8.4e-19	33.3
WP_002791419.1\|562039_562381_-	hypothetical protein	NA	NA	NA	NA
WP_002795448.1\|562622_562814_-	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_002806833.1\|562816_563740_-	AAA family ATPase	A0A2H4JAW1	uncultured_Caudovirales_phage	3.9e-09	24.5
WP_002804144.1\|566231_566906_+	LexA family transcriptional regulator	X2KRC9	Campylobacter_phage	9.8e-26	32.1
WP_002804146.1\|566905_567604_+	hypothetical protein	NA	NA	NA	NA
WP_002932489.1\|567681_568572_-	GTPase Era	NA	NA	NA	NA
WP_002877690.1\|568568_569888_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	6.2e-40	28.6
WP_002932490.1\|569884_570427_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA

DBSCAN-SWA_2

880030 : 887385

Campylobacter_phage(62.5%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002870187.1\|880030_881164_-	hypothetical protein	A0A1C6ZDL9	Pseudomonas_phage	5.1e-27	34.2
WP_002870186.1\|881280_882663_-	DUF935 family protein	A0A0M3LRU4	Mannheimia_phage	8.2e-11	22.7
WP_002865465.1\|882659_884186_-\|terminase	phage terminase large subunit	A0A0M3LQB7	Mannheimia_phage	6.4e-49	31.1
WP_052790176.1\|884938_885754_+	DNA adenine methylase	A7YGW6	Campylobacter_phage	8.2e-152	100.0
WP_002865266.1\|885783_886071_-	hypothetical protein	A7YGI8	Campylobacter_phage	6.6e-48	100.0
WP_002843339.1\|886150_886345_-	hypothetical protein	A7YG72	Campylobacter_phage	1.8e-28	100.0
WP_002865000.1\|886354_886675_-	hypothetical protein	A7YGI4	Campylobacter_phage	1.3e-52	100.0
WP_052802830.1\|886755_887385_-	S24 family peptidase	A7YG70	Campylobacter_phage	9.7e-60	99.1

DBSCAN-SWA_3

1302555 : 1315861

Synechococcus_phage(38.46%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002922020.1\|1302555_1303287_-	hypothetical protein	E3SJ89	Synechococcus_phage	1.3e-15	26.6
WP_002922022.1\|1303283_1304807_-	hypothetical protein	B2ZYD9	Ralstonia_phage	1.9e-32	27.1
WP_002922023.1\|1304803_1305202_-	HAD-IIIC family phosphatase	A0A2K9L0P7	Tupanvirus	1.2e-10	42.0
WP_002934361.1\|1305256_1305982_-	LPS biosynthesis protein	M1H9H9	Acanthocystis_turfacea_Chlorella_virus	3.9e-52	49.6
WP_002922027.1\|1305978_1306308_-	hypothetical protein	NA	NA	NA	NA
WP_002934357.1\|1306310_1306646_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_002934356.1\|1306638_1307364_-	NTP transferase domain-containing protein	A0A1D8KNV9	Synechococcus_phage	4.2e-30	33.2
WP_002934355.1\|1307357_1307996_-	HAD family phosphatase	A0A1D8KNV9	Synechococcus_phage	4.2e-34	39.1
WP_059110756.1\|1308721_1309924_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_002934350.1\|1309926_1310595_-	NTP transferase domain-containing protein	A0A2K9L821	Tupanvirus	1.7e-06	26.1
WP_002923024.1\|1310582_1311188_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.8e-15	34.4
WP_002934349.1\|1311175_1312195_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	2.7e-59	40.5
WP_002934348.1\|1312270_1313209_-	NAD-dependent epimerase/dehydratase	A0A0F7LC08	uncultured_marine_virus	1.4e-73	46.3
WP_052803031.1\|1313232_1314267_-	GDP-mannose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	4.0e-143	72.8
WP_002934399.1\|1314263_1315316_-	NAD-dependent epimerase/dehydratase family protein	M1HKX0	Paramecium_bursaria_Chlorella_virus	5.8e-65	40.2
WP_002858844.1\|1315315_1315861_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D7XFA9	Escherichia_phage	3.7e-15	30.4

DBSCAN-SWA_4

1625166 : 1636059

Campylobacter_phage(63.64%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002789964.1\|1625166_1625358_-\|tail	tail protein	NA	NA	NA	NA
WP_002870151.1\|1625350_1625725_-\|tail	tail protein	NA	NA	NA	NA
WP_059111161.1\|1625726_1627691_-\|tail	phage tail tape measure protein	A7YG97	Campylobacter_phage	7.1e-08	30.3
WP_002876454.1\|1627720_1627951_+	hypothetical protein	NA	NA	NA	NA
WP_002789979.1\|1628058_1628295_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_002865794.1\|1628305_1628821_-\|tail	tail protein	A0A0F7LDZ1	Escherichia_phage	5.8e-10	25.7
WP_002934180.1\|1628943_1630134_-\|tail	phage tail sheath family protein	A7YGY2	Campylobacter_phage	1.4e-195	97.7
WP_002934179.1\|1630152_1631160_-	hypothetical protein	A7YG78	Campylobacter_phage	6.1e-189	97.9
WP_059111004.1\|1631259_1631631_-	DUF1353 domain-containing protein	A7YGF6	Campylobacter_phage	6.3e-67	99.2
WP_002924980.1\|1631627_1632134_-	DUF4376 domain-containing protein	A7YGA6	Campylobacter_phage	5.7e-87	99.4
WP_002934178.1\|1632158_1633190_-\|tail	phage tail protein	A7YGU3	Campylobacter_phage	4.0e-188	99.4
WP_059111162.1\|1633189_1633810_-\|tail	phage tail protein I	A7YH02	Campylobacter_phage	8.7e-61	100.0
WP_059111163.1\|1633806_1634973_-\|plate	baseplate assembly protein	A0A1X9SH02	Bradyrhizobium_phage	2.6e-13	25.8
WP_002795239.1\|1634969_1635260_-\|plate	baseplate assembly protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
WP_002795238.1\|1635256_1635448_-	hypothetical protein	NA	NA	NA	NA
WP_059111164.1\|1635456_1636059_-\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	5.7e-09	35.6

DBSCAN-SWA_5

1641880 : 1656381

Campylobacter_phage(92.31%)

head,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002865845.1\|1641880_1642768_-\|head	head protein	A0A2K9VH18	Faecalibacterium_phage	2.7e-63	43.7
WP_002790001.1\|1642767_1643808_-	hypothetical protein	NA	NA	NA	NA
WP_002865847.1\|1643938_1644403_+	DUF1804 family protein	NA	NA	NA	NA
WP_079756857.1\|1644399_1644969_+	hypothetical protein	NA	NA	NA	NA
WP_059111165.1\|1645070_1645886_+	DNA adenine methylase	A7YGW6	Campylobacter_phage	3.1e-151	99.3
WP_002865289.1\|1645915_1646203_-	hypothetical protein	A7YGG4	Campylobacter_phage	1.9e-47	100.0
WP_002934560.1\|1646282_1646477_-	hypothetical protein	A7YG72	Campylobacter_phage	9.0e-25	92.2
WP_002891469.1\|1646486_1646807_-	hypothetical protein	A7YGK8	Campylobacter_phage	1.7e-52	100.0
WP_059111004.1\|1647200_1647572_+	DUF1353 domain-containing protein	A7YGF6	Campylobacter_phage	6.3e-67	99.2
WP_002934179.1\|1647671_1648679_+	hypothetical protein	A7YG78	Campylobacter_phage	6.1e-189	97.9
WP_059111167.1\|1649847_1650855_-	hypothetical protein	A7YG78	Campylobacter_phage	2.3e-188	97.3
WP_052777354.1\|1650953_1651325_-	DUF1353 domain-containing protein	A7YGF6	Campylobacter_phage	2.4e-66	97.6
WP_059111162.1\|1652532_1653153_-\|tail	phage tail protein I	A7YH02	Campylobacter_phage	8.7e-61	100.0
WP_059111168.1\|1653149_1653440_-	hypothetical protein	A7YG81	Campylobacter_phage	4.1e-05	96.2
WP_002934177.1\|1653439_1654060_-\|tail	phage tail protein I	A7YGM6	Campylobacter_phage	2.8e-59	97.4
WP_002934459.1\|1655751_1656381_+	LexA family transcriptional regulator	A7YG70	Campylobacter_phage	2.4e-58	98.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage