CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013909	Hymenobacter sedentarius strain DG5B chromosome, complete genome	6 crisprs	csa3,cas3,DEDDh	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013909_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013909_1

273305-273409

Orphan

Consensus_repeat	Method
CAGGGGTGTCGGGGCACTTGTCGT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP013909_1

>merge|NZ_CP013909|1|273305-273409|CRISPRCasFinder
CAGGGGTGTCGGGGCACTTGTCGTTCTGATCAATCACGCCGTCGTTGTCGGCGTCGGGGCAGCCTTGCAGCTCCGCCTTGCCAGGCGTGTCGGGGCACTTGTCGT

>NZ_CP013909|1|1|273305-273409|CRISPRCasFinder
CAGGGGTGTCGGGGCACTTGTCGT	TCTGATCAATCACGCCGTCGTTGTCGGCGTCGGGGCAGCCTTGCAGCTCCGCCTTGC
CAGGCGTGTCGGGGCACTTGTCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013909.1\|WP_068188782.1\|280493_281015_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372685
NZ_CP013909.1\|WP_082684830.1\|279791_280211_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274948
NZ_CP013909.1\|WP_068188775.1\|278870_279536_+\|SdpI-family-protein	unknown	unknown	gnl\|CDD\|379303
NZ_CP013909.1\|WP_157780872.1\|281093_281267_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068188760.1\|274595_276548_-\|NADH-quinone-oxidoreductase-subunit-L	unknown	unknown	gnl\|CDD\|235836
NZ_CP013909.1\|WP_068188771.1\|278579_278834_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP013909.1\|WP_099092865.1\|277415_277985_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP013909.1\|WP_068188755.1\|269966_272552_+\|TonB-dependent-receptor-plug-domain-containing-protein	unknown	unknown	gnl\|CDD\|238657
NZ_CP013909.1\|WP_068188753.1\|269526_269886_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224916
NZ_CP013909.1\|WP_068188743.1\|265188_267654_-\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224423
NZ_CP013909.1\|WP_071885999.1\|281564_282377_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99825
NZ_CP013909.1\|WP_068188768.1\|278080_278464_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068188731.1\|261698_263141_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068188747.1\|267918_268674_+\|DUF72-domain-containing-protein	unknown	unknown	gnl\|CDD\|376655
NZ_CP013909.1\|WP_068188737.1\|264190_264583_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068188765.1\|276665_277010_-\|NADH-quinone-oxidoreductase-subunit-NuoK	unknown	unknown	gnl\|CDD\|180218
NZ_CP013909.1\|WP_157780870.1\|263390_263564_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068188734.1\|263643_264039_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240046
NZ_CP013909.1\|WP_157780871.1\|264691_265057_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068188750.1\|268774_269518_+\|DUF72-domain-containing-protein	unknown	unknown	gnl\|CDD\|376655

Protein	Function_ID	Function_description	E-value
NZ_CP013909.1\|WP_082684830.1\|279791_280211_+\|hypothetical-protein	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	9.47403e-07
NZ_CP013909.1\|WP_068188775.1\|278870_279536_+\|SdpI-family-protein	gnl\|CDD\|379303	pfam13630, SdpI, SdpI/YfhL protein family. This family of proteins includes the SdpI and YfhL proteins from B. subtilis. The SdpI protein is a multipass integral membrane protein that protects toxin-producing cells from being killed. Killing is mediated by the exported toxic protein SdpC an extracellular protein that induces the synthesis of an immunity protein.	4.58744e-17
NZ_CP013909.1\|WP_068188760.1\|274595_276548_-\|NADH-quinone-oxidoreductase-subunit-L	gnl\|CDD\|235836	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed.	0
NZ_CP013909.1\|WP_068188771.1\|278579_278834_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	2.63901e-21
NZ_CP013909.1\|WP_099092865.1\|277415_277985_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	7.72319e-27
NZ_CP013909.1\|WP_068188755.1\|269966_272552_+\|TonB-dependent-receptor-plug-domain-containing-protein	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.53193e-14
NZ_CP013909.1\|WP_068188753.1\|269526_269886_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|224916	COG2005, ModE, N-terminal domain of molybdenum-binding protein [General function prediction only].	2.95233e-26
NZ_CP013909.1\|WP_068188782.1\|280493_281015_+\|hypothetical-protein	gnl\|CDD\|372685	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.	1.52309e-07
NZ_CP013909.1\|WP_068188747.1\|267918_268674_+\|DUF72-domain-containing-protein	gnl\|CDD\|376655	pfam01904, DUF72, Protein of unknown function DUF72. The function of this family is unknown.	1.88719e-78
NZ_CP013909.1\|WP_068188765.1\|276665_277010_-\|NADH-quinone-oxidoreductase-subunit-NuoK	gnl\|CDD\|180218	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK.	6.52049e-41
NZ_CP013909.1\|WP_071885999.1\|281564_282377_+\|hypothetical-protein	gnl\|CDD\|99825	cd05782, DNA_polB_like1_exo, Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.	1.12895e-50
NZ_CP013909.1\|WP_068188734.1\|263643_264039_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240046	cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	4.88335e-49
NZ_CP013909.1\|WP_068188743.1\|265188_267654_-\|S9-family-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	5.65688e-57
NZ_CP013909.1\|WP_068188750.1\|268774_269518_+\|DUF72-domain-containing-protein	gnl\|CDD\|376655	pfam01904, DUF72, Protein of unknown function DUF72. The function of this family is unknown.	8.28478e-74

>NZ_CP013909.1|WP_068188755.1|269966_272552_+|TonB-dependent-receptor-plug-domain-containing-protein
MAWAAVLVLPLTARGQAPAPPDTARQQVALKEVVVAASKVEESFLQSPVTVEKLNARALRLTPAPSFFDAIEHLKGVQVITPSLGFKVLNARGFTNTTNVRFAQLVDGIDNQAPHIGGPIGNVLGPSDLDIKSVEIVPGTAAALYGLNAINGLADFQTKNPFSSEGLSVQQKTGVNHLGDPARGARLFTETSLRYAKVLRPKLAFKANATYLRGYDWAANDQTDINPRGNASVGLLGAENPARDPVNSYGNESSDRSVLNLGGKNYQVARTGYDETAVVDYHLKTLKTDAALHYRLRPGTELAYTYRLAAFDNVYQRSNRFQLQHYRLQQHALQLTTAVVQARAYLTQENTGHSYNLRSAAENIDRGFKPDAVWNRDYAAAWNAATQAGQPVAQAHATARTAADAGRPQPGTAAFEERLATVQAINNWDVGAALRVRANLLHAEAQVNLAETLRRGVWSRLSSKVDLLAGADHRTYLVVPDGNYFINPEKNRDPFSNLAYSKTGGFLQAGVRLANEKIRLTATLRADKNDYFITRFNPRLTAVYSPSAAVNFRLSYQSGYRFPSLFEGFSNVNSGQVKRIGGLRVMSDGVFENSYLRTSIDAFVAANSAYANANTPANATAAQKQAVQAQAIAQNRNLLVKGPYTYLRPEHIRSLEVGYKAALLPGGQWLVDADFYYNTYRNFIAQVEAYVPKTLNPDSTAIYLASKATQNRYRLWTNAQSQVYNYGGSLGLRYELPRGYLAGANTTFTRLDRTESGDGLEDGFNTPCWAYNLSLGNEKAYRNLGFGLNYRWQQGYYSQTFLVSGNVAAYGTLDAQISYTMPAQHLRYKLGGSNVLNHYYQSYLGGPSVGGLYYLSLTYEL
>NZ_CP013909.1|WP_068188753.1|269526_269886_+|LysR-family-transcriptional-regulator
MKALFLPTKNYRLNGRLWLETDDGRFLGIGRLELLEQIASLGSISKAAQAMGMSYKRAWDLVSSMNAQAAAPLVTTQTGGSRGGGAAVTAAGHEAITAFRALQARFQAFMAAETQHLQT
>NZ_CP013909.1|WP_068188750.1|268774_269518_+|DUF72-domain-containing-protein
MTTFHIGCSGYHYRHWRGAFYPEKMPMRLWFEYYSQHFRTLELNVTFYRFPKLSFLKNWYAQSPADFRFAVKVPQLITHYKQFNNVQQLLGDFYDTTGRGLLEKLGPILFQLPPRLAYDPDRLARILDCLDPSFLNVLEFRHPSWWRPDVYEELARRRVIFCGQSHPLLPDAVVATAPVLYYRFHGVPDLYRSPYDEGFLRRITSEIQAQAGVQEAYVYFNNDIDASAIGNARQMLALVQAGHVELI
>NZ_CP013909.1|WP_068188747.1|267918_268674_+|DUF72-domain-containing-protein
MPATYYIGCSGFSFRDWKGLFYPEGLPPRKWFEYYCTQFNTLELNVTFYRMPELKAFETWYTQSPPDFRFAVKAPRQVTHYKKFNAEAQPILASFYATVAEGLKEKLGPVLFQLPPKAAYTEELMQRLLDSLDPAYQNVVEFRHPSWWDAEVQRELTKHRVTFVGQSYPPPLELPDEVVANTDVVYYRFHGVPELYKSPYSPEFLARIADEITAAKHVKEVYLYFNNGIGAVGVENARQMQQLLSVPVLMP
>NZ_CP013909.1|WP_068188743.1|265188_267654_-|S9-family-peptidase
MKKLLLSVTLLLATVAGAQAQEFKYQTPPKAIQDILLAPPTPRVSLSSDGRVLALLPMQDFPTVAELAAPELRLAGLRLNPRTNGQSRVNYAVGIKLKTLPNGAEVEVKGLPAQARISGLSWSPDNKTIAFALTTPGSGTDGRVELWVADVATATARRLLATPLNDTFGNAFEWVSDSKTLLACTVPAGRGAAPAADAAPTGPAVQESGGGKKTAAPTYQDLMKSPTDERLFDYYATSQLVKVSLADGAAQPLGQPGVIQSASPSPDGKYVLVRTRHRPYSYTLPINRFPQRLDVLDLASGAPVKTVADLPLADAVPIGNDAAPTGPRNHAWRADVPATIYYVEAQDGGNPKTKAEIRDKLFTIEAPFTGAPQELAALPLRFGGLSWGNGQLALVDGYRWADRHQTTWQLNPSKPAAPLTVLFDGSSEDKYKDPGTPYEYRNAQGKSVLLTGGPMGQSIYLLGTGASPEGDRPFVDELDLIAKKTTRWWRSQAPVYEVPVAIIDASGKKRQLLTRRESPTQSPNYYLRDATKKDKLTAVTKFPNPYAAFGGSFKKQVLKYKRADGVDLTANLYLPPNYKKSDGPLPTFMSAYPLEFKDKSTAGQVTGSPYAFTRIGGGSPVFWVTQGYAVLENVSVPIVGEGSKDPNDTYIEQLVSSAKAAIDEGARLGVVDPARVGVMGHSYGAFMTANLLTHSNLFKAGIARSGAYNRTLTPYGFQGEERSYWEAPEVYNAMSPFNYVNKIKTPILLIHGEADNNTGTYPIQSERYYAALKGQGATARYVVLPAEAHGYAARENLLHVLWETNAWLEKYVKAPAPQPAN
>NZ_CP013909.1|WP_157780871.1|264691_265057_-|hypothetical-protein
MNGTFEAMTTATLKKVVYWLLVLVVGAFVFSRVGYYFITKDAPFMFDMVEQAKASARVQRHIGGYTAFKHTYNEHDLEKDTLPFRVWVYGRDSTLELKGLAIKKNQEWVPIQVDSAYVQVE
>NZ_CP013909.1|WP_068188737.1|264190_264583_-|hypothetical-protein
MHRFNLIGSALMLVLCCAVFPRKKAEREVALAGQLVPVQVLRTNCNTSAHFRSFHFTFRGREHALKVGRADCNDLRKGSNMLLQHLDAYPDVFLLPGYYSKGENWAWVGLFVIGSYGVISSWRHLRKEKT
>NZ_CP013909.1|WP_068188734.1|263643_264039_-|NUDIX-domain-containing-protein
MIDKIAWLHLHDGQLLSTRSRGKNRYYIPGGKREAGETDHQTLLREIKEELTVDLDPASLVHVGTFTAPAHGHPEGVLVQMTCYSARYTGNLQPAAEIEEVVWLNYRHRPEVSAVDQLIFDWLREQELLAE
>NZ_CP013909.1|WP_157780870.1|263390_263564_-|hypothetical-protein
MALIKPKTRKAILKEVKRLIIKHGTEVAVGLLSGLITKIFADAVEETDKPKKKKAKK
>NZ_CP013909.1|WP_068188731.1|261698_263141_+|hypothetical-protein
MLKRNWHYLLLLFLLADLGYSFWQYLQFPLDGDLAPIVWPDEAYRRVLHDPFGLRVLLHHEHYSAPNRFFTHFFLYEYFRHVPLWLQRLLSPVDSLYAACALLKIAVHALVVYVLAVAISNRRQLLSRRFLLAAALVAPLLQTGGYNYQMGVVDWSITYVAFYALPLSLLLLFFLPYLRAAVHGTPLRVSWAGYVGLLGLAVVLAFNGPTVPATVLLVCPVTLLGCWYRGFAARPAPEPVLRRAVRALGQLPPALLLPFGLFSALSLYSMFIGLNNSESQWASMPLAQRYARLPLGIYYALTEDVGLPLLLGLLVLNAFLLRRQAAPGGRVLAVLKWLGWFVVAYLLLLPLGGYRSYREYIVRHDSILPITLGLIGGFALSAYYLLTHLSAPARRRYAAVVVAGLALFTFADLRKLGTSNDCERSLFAQLAQSPDPIVRLPATCPMLDWQPLTDYHKSELDGRMLQYWNITKTPKRYYQQ
>NZ_CP013909.1|WP_068188760.1|274595_276548_-|NADH-quinone-oxidoreductase-subunit-L
MQETVLPGANAPYSTFLYVLIPLLPFLGFLLNGLLNRKLSGTVAGLIGSATVLGSFLISVMLFLNFQYQYTVQLFDWITVGSLQIPFSYQIDQLSLIMLLLVTGVGFLIHVYSIGYMHHDENVGKFFSFLNLFIFSMLLLVLGANFVILFIGWEGVGLCSYLLIGFWNKNTAFNNAAKKAFIINRIGDLGFLLGIFLIYLTFNSVQYAEVFQKASVGEFGTYGVGICTAITLLLFVGAMGKSAQLPLYTWLPDAMAGPTPVSALIHAATMVTAGIYMVLRANVLFTLSPDTLQVVAIVGAATALFAATIGLAQNDIKKVLAYSTVSQLGYMFLALGVMGYSTALFHVLTHAFFKALMFLGAGSVIHAMSNEQDLRRMGGLRKALPITFLTFLIGCLAISGIPPFSGFFSKDEILSHAFEHNKVLWAMGLLTAFLTAFYMFRLLFLAFFGEFRGTEEQKHHLHESPASMTLPLIILAVLAAVGGFMGAPMFTGGHHYLAEYLAPIFTYSQRLMPAAFSAEPDHNTELMLMGLSVAAGLLGIVLAYVQYVARAQRPAADEAQRSAPESLVYHKYYIDELYNTLFTRPVMALSTGLYKFVENGIINPVVGGFGRVVNGGGQLLRYVQTGAVETYLILMVIGIVLILGLNFGRF
>NZ_CP013909.1|WP_068188765.1|276665_277010_-|NADH-quinone-oxidoreductase-subunit-NuoK
MDQTVCQTIPEVIRTVPLQYYVFFASALFAIGVTGVLVRRNAIIIFMCVELMLNAVNILLTAFSAYRADPNGQIFVFFIMAVAAAEVSVGLGIIVMIYRNFQTTDVNLLSRLKW
>NZ_CP013909.1|WP_099092865.1|277415_277985_+|sigma-70-family-RNA-polymerase-sigma-factor
MSASQQDRQIADAVRQQRPRLLQFIRRRIPDEAEAEDLLQDVFAELVESYRLLKPVEQAAAWLFRVARNRITDLYRRKRPLSLEAAFGAAEASDDGEGLLLADLLPAPDDSPENRLLRETLMDALTDALAELPAAQRQVFVWHELEDKTFREMEEETGVPLKTLISRKHYAVLHLRKRLQKLYTELFTD
>NZ_CP013909.1|WP_068188768.1|278080_278464_+|hypothetical-protein
MDRKFWLLRGLRIFLFAALFLTAAVFLTQYLWNWLVPELFHGPAIGLGQTVGLLVLSRILFGGFRGGGRPGAWAQRRKAWQQRMAGRLEHLSPEEREKFRLQMQQRCGMGWMRRPETAAEPKMEQPA
>NZ_CP013909.1|WP_068188771.1|278579_278834_+|winged-helix-turn-helix-transcriptional-regulator
MNALFKALNDPTRRAILERLRNGPATAGAIAEQFQFSAPTISHHLDLLRQAELVTSQKQGQFVVYTLNMTVFDELLGWLYQFKS
>NZ_CP013909.1|WP_068188775.1|278870_279536_+|SdpI-family-protein
MKKNLLLWQLLTLLALLVPTAYLAYAWAGLPAQVPTHFGLDGQPNGYTRREHLWLLTLALPLGLAVLLSVLPRLDPKHRIATDTANFQKLRLALVGLVSGLACYCLYVALHPSASSGRGPAVIVGLSFALLGNYLTTVQPNYFVGIRTPWTLESAAVWARTHRVGGILFCLAGLLMVALGLVLPLAWVGKALLGLILGTVAFCYFYSYLLFRQQERLGRSA
>NZ_CP013909.1|WP_082684830.1|279791_280211_+|hypothetical-protein
MTSRFTSAVIALGLLFLALPGRAQFAYASVAPPKKAVTKPAAVENTKATTYKLVHGVIQDEQGALPGATVRLHGTRTIAVTNSEGEFELRVPADAKAVKLVCSYGGLQETVLTTAPVQAVGSVYLVRPTRPSANELSDE
>NZ_CP013909.1|WP_068188782.1|280493_281015_+|hypothetical-protein
MRSSLLLAVTSLLILALSLTGPRAQAQSKPASKLLLASAAPVGSRPAAVGNGRTSKAASPSSATKVVSGRVMGPAGVQVGAVVEVAGTEEATVTNANGEFSLTVPDNGSPVQLVASYAGFADETTTIAADDCSATLKLSTAQPVTCTIARRQGMKAYLKTAHRQARRSLRSIK
>NZ_CP013909.1|WP_157780872.1|281093_281267_-|hypothetical-protein
MGKDKKPVTPLLTKHRIHTSTNKFQFVVAKELAKAAVDPYHELTDRVLEDNAKDIKL
>NZ_CP013909.1|WP_071885999.1|281564_282377_+|hypothetical-protein
MLRHVDLTKVFFVDIETVPCHSCHDELPETHRPLWEKFSTKRHAKEVADGKTHPELYEKAGLYAEFGKVVCISVGYFRYLKDDALEFRVKSFADDDECAVLSGFGKFLERFPPASQDYRPKLDTAGKDGYYLCAHNGREFDYGYMGRRMLICGQPIPPMLDIAGHKPWDLPHLLDTMDLWKFGDNKGHISLPLLAGVFGIPSPKDDIDGSQVGYTYWTEKNLKRIVTYCEKDVITTARVYLHYTGQKALWPEVQVTHTAWPAVPAMRVMA

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Crispr_ID: NZ_CP013909_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013909_2

597355-597447

Unclear

Consensus_repeat	Method
AAGATGCTTCGCTGCGCTCTGCATGAC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP013909_2

>merge|NZ_CP013909|2|597355-597447|CRISPRCasFinder
AAGATGCTTCGCTGCGCTCTGCATGACACACGATTAATAGCAGGCGATTTGATTGGCTACGCGGTAAAGATGCTGCGCTGCGCTCTGCATGAC

>NZ_CP013909|2|2|597355-597447|CRISPRCasFinder
AAGATGCTTCGCTGCGCTCTGCATGAC	ACACGATTAATAGCAGGCGATTTGATTGGCTACGCGGTA
AAGATGCTGCGCTGCGCTCTGCATGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013909.1\|WP_071885798.1\|593611_594388_+\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|365959
NZ_CP013909.1\|WP_068189487.1\|592564_593098_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349970
NZ_CP013909.1\|WP_068189526.1\|603415_603757_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182867
NZ_CP013909.1\|WP_068189535.1\|605174_605879_-\|DsbA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|239322
NZ_CP013909.1\|WP_082685248.1\|594384_595092_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
NZ_CP013909.1\|WP_157780895.1\|605980_606478_-\|DUF892-family-protein	unknown	unknown	gnl\|CDD\|153118
NZ_CP013909.1\|WP_068189500.1\|595266_595758_-\|YajQ-family-cyclic-di-GMP-binding-protein	unknown	unknown	gnl\|CDD\|377366
NZ_CP013909.1\|WP_068189523.1\|599912_603326_+\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NZ_CP013909.1\|WP_068189490.1\|593147_593597_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068198104.1\|589570_592285_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NZ_CP013909.1\|WP_068189512.1\|597536_598547_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|376672
NZ_CP013909.1\|WP_068189532.1\|604552_605002_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225064
NZ_CP013909.1\|WP_068189540.1\|606883_607876_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381375
NZ_CP013909.1\|WP_068189529.1\|603857_604544_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_082684859.1\|596695_597247_+\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NZ_CP013909.1\|WP_068189542.1\|608002_609094_+\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
NZ_CP013909.1\|WP_068189516.1\|598926_599667_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294
NZ_CP013909.1\|WP_068189503.1\|595863_596325_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP013909.1\|WP_071885799.1\|596384_596627_-\|DUF962-domain-containing-protein	unknown	unknown	gnl\|CDD\|377609
NZ_CP013909.1\|WP_099092867.1\|586268_588602_-\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349872

Protein	Function_ID	Function_description	E-value
NZ_CP013909.1\|WP_071885798.1\|593611_594388_+\|DnaJ-domain-containing-protein	gnl\|CDD\|365959	pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.	1.26307e-22
NZ_CP013909.1\|WP_068189487.1\|592564_593098_+\|RNA-methyltransferase	gnl\|CDD\|349970	cd18097, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU. RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	2.31935e-76
NZ_CP013909.1\|WP_068189526.1\|603415_603757_+\|hypothetical-protein	gnl\|CDD\|182867	PRK10959, PRK10959, outer membrane protein W; Provisional.	0.00299971
NZ_CP013909.1\|WP_068189535.1\|605174_605879_-\|DsbA-family-oxidoreductase	gnl\|CDD\|239322	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.	2.1116e-92
NZ_CP013909.1\|WP_082685248.1\|594384_595092_-\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	8.13787e-62
NZ_CP013909.1\|WP_157780895.1\|605980_606478_-\|DUF892-family-protein	gnl\|CDD\|153118	cd07909, YciF, YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF).	1.72682e-48
NZ_CP013909.1\|WP_068189500.1\|595266_595758_-\|YajQ-family-cyclic-di-GMP-binding-protein	gnl\|CDD\|377366	pfam04461, DUF520, Protein of unknown function (DUF520). Family of uncharacterized proteins.	2.94215e-70
NZ_CP013909.1\|WP_068189523.1\|599912_603326_+\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_CP013909.1\|WP_068198104.1\|589570_592285_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NZ_CP013909.1\|WP_068189512.1\|597536_598547_-\|NYN-domain-containing-protein	gnl\|CDD\|376672	pfam01936, NYN, NYN domain. These domains are found in the eukaryotic proteins typified by the Nedd4-binding protein 1 and the bacterial YacP-like proteins (Nedd4-BP1, YacP nucleases; NYN domains). The NYN domain shares a common protein fold with two other previously characterized groups of nucleases, namely the PIN (PilT N-terminal) and FLAP/5' --> 3' exonuclease superfamilies. These proteins share a common set of 4 acidic conserved residues that are predicted to constitute their active site. Based on the conservation of the acidic residues and structural elements Aravind and colleagues suggest that PIN and NYN domains are likely to bind only a single metal ion, unlike the FLAP/5' --> 3' exonuclease superfamily, which binds two metal ions. Based on conserved gene neighborhoods Aravind and colleagues infer that the bacterial members are likely to be components of the processome/degradsome that process tRNAs or ribosomal RNAs.	4.01851e-11
NZ_CP013909.1\|WP_068189532.1\|604552_605002_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	1.59727e-63
NZ_CP013909.1\|WP_068189540.1\|606883_607876_+\|aldo/keto-reductase	gnl\|CDD\|381375	cd19149, AKR_AKR11B2, Escherichia coli NADH-specific methylglyoxal reductase (YdjG) and similar proteins. Escherichia coli YdjG is a founding member of aldo-keto reductase family 11 member B2 (AKR11B2). It catalyzes the NADH-dependent reduction of methylglyoxal (2-oxopropanal) in vitro. It may play some role in intestinal colonization.	4.70771e-165
NZ_CP013909.1\|WP_082684859.1\|596695_597247_+\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	1.42865e-20
NZ_CP013909.1\|WP_068189542.1\|608002_609094_+\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	9.09984e-150
NZ_CP013909.1\|WP_068189516.1\|598926_599667_-\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	1.95453e-06
NZ_CP013909.1\|WP_068189503.1\|595863_596325_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.50239e-11
NZ_CP013909.1\|WP_071885799.1\|596384_596627_-\|DUF962-domain-containing-protein	gnl\|CDD\|377609	pfam06127, DUF962, Protein of unknown function (DUF962). This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein YGL010W has been found to be non-essential for cell growth.	1.66368e-29
NZ_CP013909.1\|WP_099092867.1\|586268_588602_-\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349872	cd03875, M28_Fxna_like, M28 Zn-peptidase Endoplasmic reticulum metallopeptidase 1. Peptidase family M28; Endoplasmic reticulum metallopeptidase 1 (ERMP1; Felix-ina, FXNA or Fxna peptidase; KIAA1815) subfamily. ERMP1 is a multi-pass membrane protein located in the endoplasmic reticulum membrane. In humans, Fxna may play a crucial role in processing proteins required for the organization of somatic cells and oocytes into discrete follicular structures, although which proteins are hydrolyzed has not yet been determined. Another member of this subfamily is the 24-kDa vacuolar protein (VP24) which is probably involved in the formation of intravacuolar pigmented globules (cyanoplasts) in highly anthocyanin-containing vacuoles; however, the biological function of the C-terminal region which includes the putative transmembrane metallopeptidase domain is unknown.	5.87504e-72

>NZ_CP013909.1|WP_082684859.1|596695_597247_+|PaaI-family-thioesterase
MTSIFTQLASPNAFLLFRAKSVSDTQLPTRPTPELAAMVAAYNHMNHYGRANGMALTVPAPGQAEYRMTIQEEHLSSPNTCHGGVLAGLMDAALGASALSLAFTSLEFVSTVEFKMNYLHAVHLHDVLVAKGTVDHTGKKLIVSSCVIYRVADGKQDVAVARGLGTFNRYPASKRDFAKLLMQ
>NZ_CP013909.1|WP_071885799.1|596384_596627_-|DUF962-domain-containing-protein
MSALPLTFAEFYPRYLREHSRRGTRVLHFVGTTLFLGCVVMLGITGQWGWLPAGIVAAYGFAWVGHFFVEHNRPATFQHP
>NZ_CP013909.1|WP_068189503.1|595863_596325_+|GNAT-family-N-acetyltransferase
MFQPTAVHPPRTPAEWDAYYQLRYAVLRQPWQQPPGSERVPADDEPGTIHALLLADEAAEPLVALAVGMLQPTAAHQGQVRFMAVAPQAAGTGLGRQIMTALETQAQAAGLTEIVLHSREAAVGFYQRLGYAVVEPSHTLFGVIPHFLMRKLL
>NZ_CP013909.1|WP_068189500.1|595266_595758_-|YajQ-family-cyclic-di-GMP-binding-protein
MASFDIVSKVDPQTLENAVNTAQKELQTRYDLRDTKGGIELNKKENTILLSSENSMRLKALEDILLGRVVKQGIDGTSLDFSADEQASGALVKKTIKVRAGVDKEFGRKIIKAIKDAKVKVEAQMQDDQVRVSAKKIDDLQAAIAVLRKTDIGLPLQFVNMKS
>NZ_CP013909.1|WP_082685248.1|594384_595092_-|TerC-family-protein
MEIVLGIDNIIFISIVVNRLPESEHARARTIGLLLALIFRIGLLLSISWIVGLRAPLFDLPFPWLDQPFGVTGRDIILMAGGLFLMYKSTTEIHTKLQGEEDEDGLGGGKKATMMSIILQIIVIDIVFSFDSILTAVGLVDNVLVMIAAVIFAMAIMLSFSGAVANFVNKNPTIKMLALSFLIMIGFMLVMEAAHKEVEKGYLYFAMAFSMIVELLNMRLRKKTKPVHLRDSKYD
>NZ_CP013909.1|WP_071885798.1|593611_594388_+|DnaJ-domain-containing-protein
MTHYQALELPEHATAADIRRAYRRLVLLTHPDRTPDPAAHARYLAINAAYEVLSNSNRRQAYDNALHYQAPLSATSSQTQRAQPRPGNNYSARTKSASDTANYLQYAPLGKAVCKALLIFSLLLTIDRLWITNFPHERVIKSTQFSSKKGSYCVKETENATFRGGPCFRVGELLALRRTALFGQVISLSPTTENKETPIEDYWDISFLYTTGGALFPVIMFVTALVGAWPGPAGRRQVDCAMTAGLLAVLVFWLLATS
>NZ_CP013909.1|WP_068189490.1|593147_593597_+|hypothetical-protein
MNADSSPLASVRPDAALLALRPAIAAVQLSDGPAATVGDFLHATLRPVLKLQNNLLLAVVTDFVLDHHMALAKASPTDQERQLAELLTRNTKLRYTVIGLITGCFTDEEYAFYRQHRAELNRRLLELAQRRVLDQTSRVVALTAEVPAS
>NZ_CP013909.1|WP_068189487.1|592564_593098_+|RNA-methyltransferase
MRKLTMAELNRVAVADFKSTPKSPVVLVLDNVRSMHNVGAIFRTADAFALERIWLCGITPRPPHREITKTALGSEESMAWEYAPETMAAVAGLKEAGYQVVAVEQTTGSVTLPNFQPEPGRPLALVLGNEVFGVDDAVLALCDLAVEIPQFGTKHSLNVGVAAGVVLWDALVKLGVV
>NZ_CP013909.1|WP_068198104.1|589570_592285_-|DNA-mismatch-repair-protein-MutS
MKQYYLLKQQHPGAVLLFRVGDFYETFGEDAVTAARILDITLTKRGGGTPNEIALAGFPHHALDNYLPKLVRAGQRVAICDQLEDPKLAKGLVKRGITELVTPGVSMHDNVLERRANNYLAAIHFGKAEAGISFLDISTGEFLVAQGTLDYLGKLLQNFSPAEVLFCKKSRSEFEQHFGPDFCTYALDEWVFGNDYAHDTLTRHFKTTSLKGFGVDTLKEGIVAAGCILHYLAETKHSDLGHVASLGRLEEDKYVWLDRFTVRNLELVHAQHPGGVPLIDVLDQTLTPMGARLLRKWIVLPLKEVSQIQRRLDTVAALVADEELLGDLTQHLRQISDLERLISKVAVRRVNPRELLQLARALEAIAPMRERLAASGVKALVKLADQLNPCANLRQEILAKIKPDAPLLTNQGGVLNPGIDPELDELRALAFSGKDYLLQLQLREQRNTGISSLKVAYNKVFGYYLEVTNAHKDKVPASWIRKQTLVNAERYVTEELKTYEEKILNAEEQLFAIEQRIYTDLVLAALDFVPHIQQNARAIGVMDCLASFALTARQQRYVQPVVNDGTVLDIRAGRHPVIERQLPPGESYIPNDICLNQDEQQIVVITGPNMAGKSALLRQTALIVLLAQIGSFVPADAATVGIIDKIFTRVGASDNLSKGESTFMVEMTETASILNNLSDRSLVLMDEIGRGTSTYDGISIAWAIVEHLHNNPKAKAKTLFATHYHELNQLADECPRVRNYNVAVKEADGRILFLRKLQAGGSEHSFGIHVARLAGMPHSVVLRANEIMHHLEVERTNAGAEDATPTEFDDLLDDLSNGTRSAKSRVAVPAAGPEPEAEAAIPRPRATLAVATAPRPTVQLSMFEPSDPALERIRELLQHLDINTLTPIEALMKLNELKLTLGKP
>NZ_CP013909.1|WP_099092867.1|586268_588602_-|M20/M25/M40-family-metallo-hydrolase
MTLLRVSRWLPLAGVLLLVALSLYLANPPRPVPATAPAVVFSAERALREVAVIARRPHSIGTLDHDRVRDYLVQRCRALGLRVTVQDTTVVSGFRGIVTGARVQNVVAYLPGRTPGGPGVLVVSHYDSQPHTPGAGDDGSGVATALETMRALRAGPPLAHDVRWVFTDGEEIGLMGARAYAADTARLRREVGVVLNFEGSGNEGPTLLFEVSPGNGWVVGEFAKAVPGAFGSSLFYEVYRNLPNDTDFTAFRATGLPGLNFAFNGGHSYYHSPVDTPGRLHPGTVQQQGDYMLPAVRHFASIPLVRTPAPDSTFFNPLGSWLVQYDARWDYLLTLVAGLLLAAAAVRARRQGRLRLRGWLGGALAWVGGLLLLGATAWGLTRLVAGAYLQYALFYDHTFYNVRAYHLAFVALGTAVFAAYYAGLLRWLRPDSLTGGALLVLAVLQVLVLVKAPTSGFLLGFPLLFGAAGWALRGSQPAGERVVPSQRAWAWVWVLPAVALLAPGLSILLTTAGLGTLLLGAAFFLAVLLGMLLPVLLPALRRADASGARVHWAVPGLSGLVAIGALVAAHARSTPTADLPQQTQVLYILDADERQAYWVSSLPHADAWTRQFFSAPTFRTMPTLFPGGLLPILHQTAPSLALAAPTVELVADSALPTGRRLRLLVRASRPGVVNLRLQWPRSARLVRVAGQVVPPPPADAKSPAPTGAYATLLYYAPGAAGVQLEIETAGPGAFELVAVDRSLGLPPVPGIQPLPATMIPAPGSGSFTTQVKKGFNL
>NZ_CP013909.1|WP_068189512.1|597536_598547_-|NYN-domain-containing-protein
MNQMNSPLIRVGVFYDGNYFLKISDYYYFQHERKARISLEGLHEYIRHQVAEEEDVDVRLAQITDAHFFRGRLSATEARDKDRLFHDRLLDDILMNLGVQTHYMALKTRDGRLQEKGIDVWLSLEALELALHKTLDVVVLIAGDSDYVPLIRKLNTVGTRVMLLNWDFKYEDFKGETRVTRASQQLLEQVTYPVAMHDVIDRGLQAQDEVVEALFVNQSEPAAFAPSTPSAPKLVRPAGPTAAGPVGTLGMSTIKNLKNGFGFVVMPPNNLFFSYADLTEGDFNDLREGDWVEFTVGRNHRDEDCARNVRKVAAPQLSDMEDEYEPVPVHAATAEL
>NZ_CP013909.1|WP_068189516.1|598926_599667_-|metal-dependent-hydrolase
MRGSSHLAIGLITGVAIAGLVPGIPFSLPGIALAGFSSLAPDLDHPDSRLSKRLGFSQNYVRWAFAAGALALGAYAYLRLVPGAEQRLYYTAALAFGLIGVGMQGGSARRLALLFTGLGTVVAGLYTEQLWLSLLGTFVALAPFTSHRSWTHTIWATALWTYIGYLADQHLGWHGVALFAGSGYLSHIVADTLTKAGVRWFLPISEFSFKIPLISTGSATGNMLEIAICAGYAMLVLGLVVGHMGF
>NZ_CP013909.1|WP_068189523.1|599912_603326_+|transcription-repair-coupling-factor
MQVADFLRLYRLSPELQTLASRLRAAAKPDPSSVRLHLRGLVGSQDAVVAAAVAHAQHPHVFVLHDKDEAAYFLSDLQHLLPEGPEALLFPSSYKRPYQFDETENANVLMRAEALNRLNTTRAATTGNSVFIVTYPEALTEKVINRQSLVKNTFNAKVGDKLDVNFLGELLGEYDFEKTDFVYEAGQYAVRGGIVDVFSYANELPFRLELFGDEIESIRTFNPETQLSVEPRPSISIIPNVQTKMLTETREAFFEFLPRTACIWMKDVRQTLDVVTELYEKAEANFQQMLSEAGGMQIVSKPSDLFESGKNFKKLLDEFAVVEFGKRFHFKNAETFQFSAKPQPSFNKEFERMVKNLKENQLRGFTTIITADTVRQADRLRTIFDELDNNVQFQHLLLALREGFIDEQLELAVYTDHQLFERYYRAQETRKFSKKKALTLRELKTLQPGDYVTHQDYGIARFAGLTQVEINGQIQEAIRLVYRDDDLLTVSIHSLHKIAKYSGAEGAPPTMSKLGSPEWENKKKSVKKKVKDIAADLIRLYAKRKTAPGFAFSPDGFMQAELESSFIYEDTPDQAKATEDVKQDMQQPHPMDRLVCGDVGFGKTEIAIRAAFKAVADGKQAAVLVPTTILAMQHYKTFRDRLATLPVTVEYINRFKSTKQIKETLQRVAEGKTDILIGTHRLTNKDIKFKDLGLLIIDEEQKFGVKTKDKLKELKVNVDTLTLSATPIPRTLHFSLMGARDLSVIATPPPNRQPVQTELHVFDEILIRDAVSRELKRGGQVFFVHNRVKDIEEMANTILRLVPDAKITYAHGQMDGEMLEKRMMKFVEGEYDVLVSTNIIESGLDIPNANTIIINRAHLAGLSDLHQMRGRVGRSNRKAYCYLLTPPVANLPADARKRLSTLEEFSDLGAGFNVAMRDLDIRGAGNLLGGEQSGFINDLGYETYHQILDEAVQELKETEFRDLFLGDSNQRLQQAAGAGRIQECNVETDQQVLIPEKYVSNVSERLQLYAKLDRAQKPEELQKLLTSMTDRFGPLPPEVEQLADIVRLRWQACKVGFTKITLKRDTLKGFLPADDDHKAYFQGEQFGTILNYVQTHSRTANLKEKKEQLIVTFEEVRSIQQAKRVLSELGSEEAVAV
>NZ_CP013909.1|WP_068189526.1|603415_603757_+|hypothetical-protein
MKKLLVLALLAASIATASAQTPQSRAGSHSAADRAGSRTSASPAASSTTVTPNYSTPTGQRSGKKINTAPATGATRASRSSSTTKAARQGGATGSGNSETTSKNSKATPGVKK
>NZ_CP013909.1|WP_068189529.1|603857_604544_+|hypothetical-protein
MKVLVLVLLLLSAAGSAAAQTRFNPVLKRELDSLYAVDQKWRSLLFDRRISRRPDSLAAALGVAKERLGQYIGRRMQQTDSANIIRVRAILKQYGYPGKSLVGEPTNEAAWYVLQHSDDIKHYLPLVKKAAQRGELPFRLYAQMLDRQLMREGKEQLYGTQAMGYSPLNPATGQRKSQPPFVWPIKNAAGVNARRQKAGFSTTVEQNAATLGIPYRVLTLKDVARMPK
>NZ_CP013909.1|WP_068189532.1|604552_605002_+|GNAT-family-N-acetyltransferase
MTLSWTIKPYDELTLTELYELLRLRVEVFVVEQNCPFQDLDRQDDQAYHLLGYTEDNELAAYARLFDAGLSYEEVAIGRVAVSPAHRRHGLGQELMRQAIAYCEVLYGPQPIKIGAQQYLERFYQAFGFVQHGEGYLEDGIPHIPMVRA
>NZ_CP013909.1|WP_068189535.1|605174_605879_-|DsbA-family-oxidoreductase
MKVEIWSDIVCPFCYIGKRRFEQALEKFPHADNVEVVWRSFELTPDYRPIPGRNVYESLAEKKGIPVAKAKEMSDYMADMAKEVGLKYDFDNAVPTNTFLGHQLIHLAAKHGKQGEAKERLMAGYYLQGQDLNDVDTLVKLATEIGLDAEEARAALLNGTYAEEVRHDEYQAQQINVRGVPFFVFEDKYAVSGAQPTELFSEVLEKVWDEFQPTKPAPIMVADGPACGPDGCEI
>NZ_CP013909.1|WP_157780895.1|605980_606478_-|DUF892-family-protein
MNQLRTMRDLLVHDIQMMYSAEQLGLEGLATLVENTSEPRLKAAFEKHGVETRRQVARLEQIMDLMEVKPSREVCSAMKGLLTDAEKLMRKESTPQVLDAMLLAAAQKMEHYEIACYGTAVRMTEDMGMTQAAELLRQTLEEEKKTDEILNEIAKLRVNVKAEMM
>NZ_CP013909.1|WP_068189540.1|606883_607876_+|aldo/keto-reductase
MEYQELGTSGVAVSRITFGSWAAGGWMWGGTEQNDAVGAIHASYDLGVTSIDTAPVYGMGFSEQIVGEAIKSLPRDKVQILTKFGMRWDLAKGDFAMKTKDNNGHDLDVYKYAGRDSIIKECEDSLRRLGTDYIDLYQQHWPDVTTPIDETMEAVMRLIEQGKVRAAGVSNYSVAQMQEAEKTLNIASNQVPYSMVRRDIEQDLVPFCMEHNKAILVYSPLQLGLLTGKMKPGQEFGDGDLRRGHRLFTPESVTRVNAMLNKIRPLAETKNVTLGQLVLRWTLAQPGITVALVGARNPEQAVQNARAIDLQLSFEELDFINKQLAALQPA
>NZ_CP013909.1|WP_068189542.1|608002_609094_+|glutamate-5-kinase
MPLAYRRLVVKIGSNVLTQDNGLPDLARMEQLVAQVAGLKAQGMEVIMVSSGAVAAGRSLITLPAKTDAVRGRQLLAAVGQVKLLSTYAELFGRHGLLCAQVLVTKEDFRDRQHYLNMRNCFQELLQREVIPIVNENDVIAVTELMFTDNDELAGLIAAQLDADALVILTNVDGIFDGDPRLPTSQLLREIAPTATGFANFVTAQRSQFGRGGMLTKCHMAHKVAKLGISVHIANGKTADILPAVLAETAAHTWFRPSKTASGKKKWLANSQDSAKAAVRVNAGAVAALTAAGKASSLLPVGVLAIEGAFRKGDIIRLTDEKGHLLGLGIAEYGSDKALERLGQQHQRPLVHYDYLFLTPNLA

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Crispr_ID: NZ_CP013909_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013909_3

778454-778535

Orphan

Consensus_repeat	Method
AGATGCTTCGCTGCGCTCTGCATGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013909_3

>merge|NZ_CP013909|3|778454-778535|CRISPRCasFinder
AGATGCTTCGCTGCGCTCTGCATGACAGACGAGTTGACTACTACTGACTGAGGTAGAGATACTTCGCTGCGCTCTGCATGAC

>NZ_CP013909|3|3|778454-778535|CRISPRCasFinder
AGATGCTTCGCTGCGCTCTGCATGAC	AGACGAGTTGACTACTACTGACTGAGGTAG
AGATACTTCGCTGCGCTCTGCATGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013909.1\|WP_068189908.1\|777516_778296_-\|cyclase-family-protein	unknown	unknown	gnl\|CDD\|377240
NZ_CP013909.1\|WP_068189894.1\|769716_770142_-\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379639
NZ_CP013909.1\|WP_068189930.1\|791680_793237_+\|glycoside-hydrolase-family-32-protein	unknown	unknown	gnl\|CDD\|350134
NZ_CP013909.1\|WP_068189898.1\|771770_774152_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|178056
NZ_CP013909.1\|WP_068189912.1\|778603_779278_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378924
NZ_CP013909.1\|WP_071885805.1\|784318_787483_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|274948
NZ_CP013909.1\|WP_157780906.1\|770731_771115_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373980
NZ_CP013909.1\|WP_068189905.1\|777170_777446_+\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_CP013909.1\|WP_068189934.1\|793352_795191_+\|BamA/TamA-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|227116
NZ_CP013909.1\|WP_082684874.1\|774429_775053_-\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NZ_CP013909.1\|WP_068189924.1\|787505_789233_+\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|369630
NZ_CP013909.1\|WP_068189902.1\|775301_776261_-\|ribonucleoside-diphosphate-reductase	unknown	unknown	gnl\|CDD\|215272
NZ_CP013909.1\|WP_068189918.1\|779739_780888_-\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|223708
NZ_CP013909.1\|WP_068189915.1\|779308_779743_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_082684875.1\|781176_783957_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380531
NZ_CP013909.1\|WP_068198144.1\|776783_777089_+\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_CP013909.1\|WP_082684876.1\|789335_790724_+\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
NZ_CP013909.1\|WP_068189896.1\|770225_770654_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380384
NZ_CP013909.1\|WP_157780905.1\|769089_769545_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068189926.1\|790745_791648_+\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|238572

Protein	Function_ID	Function_description	E-value
NZ_CP013909.1\|WP_068189908.1\|777516_778296_-\|cyclase-family-protein	gnl\|CDD\|377240	pfam04199, Cyclase, Putative cyclase. Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form part of the active site.	8.03125e-18
NZ_CP013909.1\|WP_068189894.1\|769716_770142_-\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379639	pfam14534, DUF4440, Domain of unknown function (DUF4440).	6.77832e-22
NZ_CP013909.1\|WP_068189898.1\|771770_774152_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|178056	PLN02437, PLN02437, ribonucleoside--diphosphate reductase large subunit.	0
NZ_CP013909.1\|WP_068189912.1\|778603_779278_-\|alpha/beta-hydrolase	gnl\|CDD\|378924	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family contains alpha/beta hydrolase enzymes of diverse specificity.	0.0039809
NZ_CP013909.1\|WP_071885805.1\|784318_787483_+\|TonB-dependent-receptor	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NZ_CP013909.1\|WP_157780906.1\|770731_771115_-\|hypothetical-protein	gnl\|CDD\|373980	pfam15631, Imm-NTF2-2, NTF2 fold immunity protein. A predicted immunity protein of the NTF2 fold. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, which usually contains toxin domains of the Tox-NucA family. This domain is also fused to ankyrin repeats and the pfam14025.	1.93567e-28
NZ_CP013909.1\|WP_068189905.1\|777170_777446_+\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	3.56075e-50
NZ_CP013909.1\|WP_068189934.1\|793352_795191_+\|BamA/TamA-family-outer-membrane-protein	gnl\|CDD\|227116	COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane].	2.36555e-23
NZ_CP013909.1\|WP_082684874.1\|774429_775053_-\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	6.91948e-06
NZ_CP013909.1\|WP_068189924.1\|787505_789233_+\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|369630	pfam07980, SusD_RagB, SusD family. This domain is found in bacterial cell surface proteins such SusD and SusD-like proteins, as as well RagB, outer membrane surface receptor antigen. Bacteroidetes, one of the two dominant bacterial phyla in the human gut, are Gram-negative saccharolytic microorganisms that utilize a diverse array of glycans. Hence, they express starch-utilization system (Sus) for glycan uptake. SusD has 551 amino acids, and is almost entirely alpha-helical, with 22 alpha-helices, eight of which form 4 tetra-trico peptide repeats (TPRs: helix-turn-helix motifs involved in protein-protein interactions). The four TPRs pack together to create a right-handed super-helix. This is predicted to mediate the formation of SusD and SusC porin complex at the cell surface. The interaction between SusC and TPR1/TPR2 region of SusD is predicted to be of functional importance since it allows SusD to be in position for oligosaccharide capture from other Sus lipoproteins and delivery of these glycans to the SusC porin. The non-TPR containing portion of SusD is where starch binding occurs. The binding site is a shallow surface cavity located on top of TPR1. SusD homologs such as SusD-like proteins have a critical role in carbohydrate acquisition. Both SusD and its homologs, contain about 15-20 residues at the N-terminus that might be a flexible linker region, anchoring the protein to the membrane and the glycan-binding domain. Other homologs to SusD have been examined in Porphyromonas gingivalis such as RagB, an immunodominant outer-membrane surface receptor antigen. Structural characterization of RagB shows substantial similarity with Bacteroides thetaiotaomicron SusD (i.e alpha-helices and TPR regions). Based on this structural similarity, functional studies suggest that, RagB binding of glycans occurs at pockets on the molecular surface that are distinct from those of SusD.	1.51773e-37
NZ_CP013909.1\|WP_068189902.1\|775301_776261_-\|ribonucleoside-diphosphate-reductase	gnl\|CDD\|215272	PLN02492, PLN02492, ribonucleoside-diphosphate reductase.	0
NZ_CP013909.1\|WP_068189918.1\|779739_780888_-\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|223708	COG0635, HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism].	1.87421e-118
NZ_CP013909.1\|WP_082684875.1\|781176_783957_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|380531	cd06308, PBP1_sensor_kinase-like, periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.	1.39401e-122
NZ_CP013909.1\|WP_068198144.1\|776783_777089_+\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	7.20245e-41
NZ_CP013909.1\|WP_082684876.1\|789335_790724_+\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.1884e-140
NZ_CP013909.1\|WP_068189896.1\|770225_770654_-\|cupin-domain-containing-protein	gnl\|CDD\|380384	cd06979, cupin_RemF-like, Streptomyces resistomycificus RemF cyclase and related proteins, cupin domain. RemF cyclase is a manganese-containing polyketide cyclase present in bacteria that is involved in the biosynthesis of resistomycin, the aromatic pentacyclic metabolite in Streptomyces resistomycificus. Structure of this enzyme shows a cupin fold with a conserved "jelly roll-like" beta-barrel fold that forms a homodimer. It contains an unusual octahedral zinc-binding site in a large hydrophobic pocket that may represent the active site. The zinc ion, coordinated to four histidine side chains and two water molecules, could act as a Lewis acid in the aldol condensation reaction catalyzed by RemF, reminiscent of class II aldolases.	5.04074e-27
NZ_CP013909.1\|WP_068189930.1\|791680_793237_+\|glycoside-hydrolase-family-32-protein	gnl\|CDD\|350134	cd18622, GH32_Inu-like, glycoside hydrolase family 32 protein such as Aspergillus ficuum endo-inulinase (Inu2). This subfamily of glycosyl hydrolase family GH32 includes endo-inulinase (inu2, EC 3.2.1.7), exo-inulinase (Inu1, EC 3.2.1.80), invertase (EC 3.2.1.26), and levan fructotransferase (LftA, EC 4.2.2.16), among others. These enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic nucleophile and a glutamate acts as the general acid/base; a conserved aspartate residue in the Arg-Asp-Pro (RDP) motif stabilizes the transition state. These enzymes are predicted to display a 5-fold beta-propeller fold as found for GH43 and CH68. The breakdown of sucrose is widely used as a carbon or energy source by bacteria, fungi, and plants. Invertase is used commercially in the confectionery industry, since fructose has a sweeter taste than sucrose and a lower tendency to crystallize. A common structural feature of all these enzymes is a 5-bladed beta-propeller domain, similar to GH43, that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	2.64204e-164
NZ_CP013909.1\|WP_068189926.1\|790745_791648_+\|carbohydrate-kinase	gnl\|CDD\|238572	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.	5.5272e-78

>NZ_CP013909.1|WP_068189908.1|777516_778296_-|cyclase-family-protein
MLPTYPYAGRTYSFDPAAPIDISLPLAPGKDQVNCFWAEPVQFDTIRVGSFVGSVAQGGSTNYQRVHVTPHGNGTHTECYGHISPDPAVTLNQCLRRFLFVARLVSVAPRPQPNGDQVVMLADVQAALATQPDRSMPEALVLRTLPNDPAKRHRQYSGTNPTYVEPALAHFLVEHGVQHFLLDLPSVDREEDAGQLLTHHAFWQYPAQPRYGATITELIFVPDVVADGLYLLNIQITSLELDASPSKPVLYQLHPVPST
>NZ_CP013909.1|WP_068189905.1|777170_777446_+|50S-ribosomal-protein-L27
MAHKKGVGSSNNGRESHSKRLGVKIFGGQALVAGNIIVRQRGTKHHAGENVGMGKDHTLFALVDGEVQFKKGRKDRSFVTVIPREVFSVPA
>NZ_CP013909.1|WP_068198144.1|776783_777089_+|50S-ribosomal-protein-L21
MYAIVNIAGQQTKVEANKFVYAHKLAGNVGDTVTLGNALLTDDNGTITIGAPTLDIAVTGTILAHVKGDKVLVFKKKRRKGYQKMNGHRQSFTKVMINSIG
>NZ_CP013909.1|WP_068189902.1|775301_776261_-|ribonucleoside-diphosphate-reductase
MEPLLAENPNRFVLFPIQNDEVWQYYKKSQASFWTAEEIDLSQDQKDWNSLNDNERHFIKHVLAFFAASDGIVNENLAVNFMQEVQMPEARCFYGFQIMMENIHSETYSLLIDTYIKDPKEKDYLFNALETVPAVQKKGEWALKWINSENFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSYLVNKLPEERVQAIIADAVRIEQEFVTDALPVSLIGMNAKTMAQYIEFVADRLLVSLGCGKIYNATNPFDFMEMISVQGKTNFFEKRVAEYQKAGVMSERNDNVFSLDEDF
>NZ_CP013909.1|WP_082684874.1|774429_775053_-|YceI-family-protein
MNYRLLFLLGLGAVVPAVHAQTVPAPAAGLIASLETKASRYTTGTGLVTFFSTAPLEDIEALNSKVGAIFEMATGQLAFSMLMSDFQFKNGLMQEHFNENYAESEKYPRARFTGKLLTVPDEAQLRSGPQAVYVQGQLTIHGVSRKMRVPGTLQLRDHDLVVTSKFAVAPADYRIKIPALVRNNIAKSIDVSVIMTCQPTPAPTASQ
>NZ_CP013909.1|WP_068189898.1|771770_774152_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MLVIKRDGRRESVKFDKVTARIEKLCYGLHMDFVSPIEVAKKVIDGIYDGVTTVELDNLAAETAASLTTKHPDYAILAARIAVSNLHKVTSKSFSSTMKRLYTYEDPKNGDNASLLATDVWEVIHKNAATLDSAIIYDRDYNYDFFGFKTLERSYLLRLEGKVVERPQHMLMRVSVGIHKSDIDSVIKTYNLLSERWFTHATPTLFNAGTPKPQMSSCFLLTMKDDSIDGIYDTLKNCALISQSAGGIGLSVSNVRATGSYIKGTNGNSNGLVPMLKVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLKKNHGKEEMRARDLFYAMWTPDLFMKRVEENGDWTLMCPHECPGLDTSWGPEFEKLYAKYEREGRGRRTIKAQELWFAILESQTETGTPYMLFKDAANGKSNQQNLGTIKSSNLCTEIIEYTDKDEIAVCNLASLALPRYLVTDKAGNTTFDHQKLYEVTYQATLNLNKVIDVNYYPVPETQKSNFRHRPIGLGVQGLADTFIALRMPFESDEASGLNKDIFETIYFAAMTASKDLAIKDGAYETFPGSPLSQGKFQFDLWGVTPDSGRWDWESLRAEVVKHGARNSLLVAPMPTASTAQILGNNESFEPYTSNIYVRRVLSGEFMVVNKHLLKDLVALGLWNDQMKQEIIAANGSVQGIARIPQHIKDLYKTVWEISQRRIIDQAADRGAYICQSQSLNLHVQNVNFGKLTSMHFHSWKRGLKTGMYYLRTKAAADAIKFTVEKQAAETLEPMALVEQNQSDMSCSLDNPEGCEACGS
>NZ_CP013909.1|WP_157780906.1|770731_771115_-|hypothetical-protein
MVKLEVGVACGMKQQVFLSLVTALLVAASRANAQTPKATLPEPTASPSFMPSSGFVPDAVTAKRIAEAVWLPIYGKKVLSEKPYQATLNSKDVWVVEGFLPKEMDGGVAYIEISKRDGRILEVTHGK
>NZ_CP013909.1|WP_068189896.1|770225_770654_-|cupin-domain-containing-protein
MTEPKEIIRIGALELRFLLDGDDTDERMVVFEFSVPPGAKVPAPHYHEEVDELVYGLAGTMSTTVGGLLQAIGPGDRRFIPRGVVHHHANLGSETATLLTVLTPASIGPAYFRELGALLQAGGPPDPARVQKIMAKYGLVVA
>NZ_CP013909.1|WP_068189894.1|769716_770142_-|nuclear-transport-factor-2-family-protein
MKSVASSPTPSAPAAAVLASIEQLETRLRLAQLAADVPALAELLADDLLFADMQGRLVGKAEDLEAHRSGLLRITAARPLQQLVRVLNETTAVASVLADMEGTAAGQPFHQQVRYLRVWARQAGHWRMVAGHVTTVVVPEG
>NZ_CP013909.1|WP_157780905.1|769089_769545_-|hypothetical-protein
MAFSKNVIWLLVLLCLGWSKPGLAQQASPPVSLGASQPLLNAADTVAALQDLFQTKRKSSGLALVAAPVALGLGVVSMAVAALSNLDSGPSDNTLPTIGVLAGLGGTVALLSRYTRYTKGNEKEILSKYERTHKLPGWAKRNLAQQRLGPL
>NZ_CP013909.1|WP_068189912.1|778603_779278_-|alpha/beta-hydrolase
MAASPPVFYLIPGLGADERVLQFLHLRGEVHLLHWLAPETPDESLPHYAARLAASVPVEQACWLVGISFGGLLALEVAKLRPQAQVVLISSLANTRQLPPLLRLARATRLYRVVPPQLLKLAPRLAQWFFGAKNGKEYTLLHQIIGDTDPVFAQWAIARLLGWDSTGVGRAIRIHGTYDRLLPAGTAPVDYPIAGGGHFMIVSHAAQISSILNRLAAAEEPQKG
>NZ_CP013909.1|WP_068189915.1|779308_779743_-|hypothetical-protein
MKLLSDSIADEADFFVEQIHIVAIVFDNTDDVTVWATTLFDSDTHFFHLALPFKALDTLLSLAHTRADDLQEEVAEALAAEEWPALLEYSSDEKPPVPLPSVALKLSVTYPATEDDETEDEEGADDPQPHNIFYLEGVFVRIDT
>NZ_CP013909.1|WP_068189918.1|779739_780888_-|radical-SAM-family-heme-chaperone-HemW
MAGLYLHIPFCKQACHYCDFHFSTSLGLKSRLVEAIVREIELRRDYLGPNTSLETIYFGGGTPSLLTAAELDQIFTAIHRHFAVLPGAEITLEANPDDLSAAKLHELQQASVNRLSIGLQSFYEPHLRMMNRAHTAEESTTAVRRAQDAGFENISIDLIYGVPAPGHHIWEADLANAFALGVPHVSAYALTIEPGTAFGHRLQKGTFKPAPDEFVATQFEMLLAAMRAHGYEQYEISNFCQPGRESRHNGNYWRGVPYLGLGPSAHSYDGHNRQFTLANNPQYVAAVLERGEVPVTVDALTATDRANEYLLTTLRTARGCDLAHLRTAHGFDLLATRAVYLAELQANGWARISGEVLTLTDAGKLLADHITLELFQTPAVAA
>NZ_CP013909.1|WP_082684875.1|781176_783957_+|substrate-binding-domain-containing-protein
MKSLAATLARPRTWLGQALGLLLLLAGSCTAPAPKPYRVGFSQCTTGDAWRQAMLAGMKKELSFYPQVHFQMKDAHDNSALQQRHIQEFLNEGVDLLIVSANQAEPITPIVEEAFNRGIPVVILDRRTTSKLYTAYVGGNNLEVGQTAGNYASSLLHQQGNVLEVLGAAGASPAVDRHRGFVQGLATYPGMHLVAQVQGDWKRPSVIRALPAVLRAHPEVNLIFAHNDRMALGAYQVCKQLGLDRRIRIIGVDGLAGPQGGIQLVQDKVLTATLLYPPGGEEAIRTAMKILQKQPYEKENILSTMVIDSTNVLTMKMQTEKLASQQQDIQRQQRVLQAQLATYTSQQIVLYILAAALLGALVLGVVLWRAFQVNRRITRKLAGQNEEIRTQRNQIQALAEQARVETEAKLRFFTNFSHELRTPLTLIMGPVEELLTNGADLSAAQRHDLGLVRRNTQRLLQLVNQLLDFRKIDVGKMPVRATEGNVVAFVRDIMDVFEKPARQRGISLRFLPAEPSIRLWFDVNILDKVIFNLLSNALKFTPERGQITVSIQPLPAEGQVRISVEDTGRGISEQDRAHIFEWFYQGQQGVAKGSGMGLALSMGLVRLHQGELTFTSTPGQGSTFTVTLPQELPASMRSTEAPVPALALAEEELGLSVAEDSPIARRPGKDSKALVLVIEDNLEVNAFLAQKLRPHFQVQTATDGATGLRLAADTIPDLIVCDVMLPEITGLEVVAQLKGDWRTSHIPVVLLTARSAPEQQVEGVQAGADLYLTKPFNPTFLLENLRTLLSNRDRQREHFRRELSVDTATVAPQRVDQKFLSDLTAIVEANLGNAKLSVEDVARSLGTSRVQLYRKTKALLGTGVTDFIQDIRLTKARQQLLNPELNIADVAYQLGFASPSYFSASFKAKYRISPSEFRALHTTPSV
>NZ_CP013909.1|WP_071885805.1|784318_787483_+|TonB-dependent-receptor
MRKSVLLARQLLLPTLLATGPLLAGASPNETAPPALALASAALADRPITGRVTDEKGEGLPGVTVLVKGTELGTSTGPDGSFALTVPDGATLVLSFVGYKTQEVAVGSQATVAVQLATDAKALDEVVVTGYQTQRKADLTGAVSVIKVDEVKDMASNDVTRNLQGRVPGVNITTDGAPGSAATVRIRGFGTLGNNDPLYVIDGIPTKEGINQINQNDIESIQVLKDASAASIYGSRAGNGVIIITTKKAKKGATQVNFSTFFTVQKPGPHIQMLNTLDYGKVYFQAAANDGATPSLPYYNFRSHLDASGRRVLDQVVLPDFIDAEKTMRPADTDWFKQTQQDALIQSYNLSVSSGGERGSALFSVSYYDNNGTLKYTGLNRFTARLNTDYNFFGGKLKVGENLTLAKSQQAQYDLGLVRDRSSQLPSIVPVHTVDGVGWGGPVAGMSDRDNPLRLLTDNQQNRSNTGRAFGNVFADAELLKGLHLRTSFGLDYSLYKYTELYKTFKAGFLSNQDNRVTNHESFGGNWVWQNTLNYNLNFGDKHQLDLLAGTERISYHSESTYASRTNFASEDPNYVVLDAGSANKDNGGSATAYRLASYFAKVNYSFADKYLASATIRRDGSSRFGADNQFGVFPALSVGWRLSEEGFLKNNAPFISDLKLRAGWGQTGNQDIANFAARGLYQSLLGTLDPNFDYDHGTAYDIYGNNTALPSGYRRVQRANPNLKWETTTQTNVGADFGFLDNRLTGSVDYFVKDSKDILVNLPYAAVIGEGGDKFVNGASIRNKGWEFLLGYQNKLENGVTYNLTGNVSTYRNKLTFLPTEVINAYGGNGQDVTRLGHSINATYGYVADGLFQTAAEVSGAPTQVGAAPGRIRYKDLNGDGKVNNFDQTWISEGVPNFNYGLNLGAGYKGFDLQIFLQGVQGLYSYNNSKFRTDFASLASGENWGTRLLDAWTPTNTGSSIPAATLINSNNEGRSSTYFIENASYLKLRNIQLGYSLPAGVVSRIKLQGVRVYVQGQNFLLHKSSEFTGPDPEVTNYQYPVPRIFTTGLNVSF
>NZ_CP013909.1|WP_068189924.1|787505_789233_+|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKIFKSSVLALSLLTFSFGCSDKKFLDVPPTGVLADEDLNTPANIEKQVIAAYSQLGNDVYRTPYTSMWPYGNIRAGDAYKGGGGTADVDAFHFYETFSFNRPDIGNTDELWFLLHIGVSRANDALRRLAVVSDAAMPNKAIRQGEARFLRGHFYFLLKELFKRVPYIDETVPTEQYAEVSNVALTNDQLWGKIADDFRFAAANLPATQPEIGRATKSAAQAYLAKTVLYQAYTQSDNNAVTGIDQAKLQEVVSLADQVISSGKYSLHPDFATNFLTVGDNGPESVFAIQFSRNDGTPKGRTDRGNELNYPMNPDYGCCSFHQPSQNLVNAFKTDAQGLPLFTTFNNSDLRAETPADFQTNTVDPRLDHTVAIPTHPYKYDPTFIFQNSWVRVPGIYGYFMSMKENVLPSDPSFQKNPPFMSTSKNWTIIRYADVLLWKAEALIELGRQAEALPIINQIRQRAQNSTGRLKTSAGQPISNYRIGLYQPAQWTQAYAREALRFERRLEFALEGYRFFDLTRWGIAASYLNTYIETEKTKRQYLQTAHFTAGRDEYMPIPLNQINFSKGLYKQNTGW
>NZ_CP013909.1|WP_082684876.1|789335_790724_+|sugar-porter-family-MFS-transporter
MLRSAWRSYILKIKVIPLSYSLVKNRNVFFWSMVVALGGFLFGFDTAVISGAEKAIQQLWHLSAVEHGFTIAIALIGTVFGAIFGGIPSDKLGRRKTLVFIAILYLVSALGAALTSSWGLFVVFRFLGGLGVGASSVTAPLYISEVSPPAVRGRMVGMFQFNIVFGILAAYLSNYLLAGTGEHDWRWMLGIQAVPALAFFLLLFRIPESPRWLLGQGRTEEGRQVLRLINADTADEDVRNILTTNAADEAESSSLFARAYRGPVLLAMLFAVFNQVSGINAIIYYAPRIFEMTGLGKGSALLSSAGLGLVNFAFTLLAMNFIDRFGRRKLMLIGSVGLIATLALVARAFYTEQFGGMLVPVLLFVYIAFFAFSQGAVIWVFISEIFPNNVRAKGQALGSSTHWVMAAVIAFTFPWFAEHLGGGHTFAFFAAMMVLQLVFVWRFMPETKGTTLEQLEKTLVVH
>NZ_CP013909.1|WP_068189926.1|790745_791648_+|carbohydrate-kinase
MQPRIVCFGETLWDVLPSGKQPGGAPFNVAVHLHQLGQSVALISRVGDDDLGAELLAFLQQRGLSTDYVQRGQTHLTGVVKANIGDRNEVVYKIVQPVAWDYIQYEDRLSELVAQADMLVFGSLAARTPATRETLYRLLPQAKFRVFDVNMRPPHYTRPVVQYLLEHSDLVKMNHHELAEILEWFGKSADDDSALEWLATRFSLQAVCVTLGADGALLWTGGRLYRSAGFPVEVTDTIGSGDAFLAALLTGWLAGQPPQECLQFACATGALVATFQGATPLITPADVAALRQAHAVSSPS
>NZ_CP013909.1|WP_068189930.1|791680_793237_+|glycoside-hydrolase-family-32-protein
MKKLFLLALSVLGLIHTSAAQTAAPAPAPTPQYRPAYHFSPAAHWMNDPNGMVYYQGTYHLFFQYYPDGMVWGPMHWGHATSADLVSWKEQPIALYPDSLGYIFSGSAVVDAKNTTGFGKNGQVPLVAIFTHHDPKGEKKGTDTFQNQSLAYSLDAGKTWTKYAGNPVLKNPGIHDFRDPKVSWNEVAKKWVMTLATKDRITFFSSPNLKEWTKESEFGQKLGAHGGVWECPDLFPMTLNGKTYWVLLVNLNPGGPNGGSGTQYFVGNFDGKTFTPLTTDTKWADYGPDDYAGVTFANTGNRRIFLGWMSNWEYANQVPTAPWRNATTVPRELGLQQVGAQLYLTSQPAKEVARLFPAATTLKDVVVKKEIDLTPRLKNVGDKFQLKISTRQLASFSVVLANGKGEAVVIGYDKPTNKYYIDRTKAGRTDFSPKFAGRHTAPRLAKTTEADLTLLVDATSVEVFADKGLTVMSELFFPTQPLSKLKLQATGNFTVQELSYANLAPKPSSSAAGLGGSK
>NZ_CP013909.1|WP_068189934.1|793352_795191_+|BamA/TamA-family-outer-membrane-protein
MLLLSGLAGRPGARAQTPALDPNVPNQPALATPPLPPVVAPATAAATRRALAHPRVLLLDAEAADRPLLRRYKVRATVPDSLAALREVRDLVLGLQADAYLTASADTMRWSRDTVRVGLYVGQPFRWAYLRNGNLGDGLLTRAGYREKFFQHSAFLPADWARLQERILIEAENQGFPFATVGLDSIQLNDHDIAGRVVLKRGRVVLFDSLQIVGNTKTKKRFLTKYLQIFPNQPFSQQRVAAAAQLLRQLPYVRLRAEPEVRFARGKARVYLLLDDRPSNQFDAIVGILPNSDQAKTGVQFTGDVTINLRNLKGGGKQIGLQWRKTDALSQLLDVQYVHPNFFGTPLEVAGTFNLYKQTDAFLTLRPRVQVSYPTARAGRVSFFFEQRSSFLLYDSLTYVSLGQLPENIDSQFNSYGLNYTWNSLDDLFFPHRGYLLSGQGAVGTKTITRNPSIREEFYNGLGLRSTQYSFGLRAERYFPVKRAGVLLLRLRGEGVLNPRLFTNDLARLGGLNSLRGFNENQFYTSSYGLATAEFRQFIGADSYAFVFIDQAYTRHDVVHDRYTDQPTGVGAGLSFRTAAGLFQFVYSLGRSRDQAFELRTSKIHFGLTSRF

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Crispr_ID: NZ_CP013909_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013909_4

2358702-2358803

Orphan

Consensus_repeat	Method
GAAAGCCGACGGCACGCCCGACATGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013909_4

>merge|NZ_CP013909|4|2358702-2358803|CRISPRCasFinder
GAAAGCCGACGGCACGCCCGACATGCGCTACTCGGCCAACAAAACCGCCAAAACCAAGACCGTGACCGGCCCCACGAAAGCCGACGGCACGCCCGATATGCG

>NZ_CP013909|4|4|2358702-2358803|CRISPRCasFinder
GAAAGCCGACGGCACGCCCGACATGCG	CTACTCGGCCAACAAAACCGCCAAAACCAAGACCGTGACCGGCCCCAC
GAAAGCCGACGGCACGCCCGATATGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013909.1\|WP_068198450.1\|2364895_2365105_-\|DUF4266-domain-containing-protein	unknown	unknown	gnl\|CDD\|379460
NZ_CP013909.1\|WP_157781017.1\|2350346_2352827_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|381615
NZ_CP013909.1\|WP_157781019.1\|2363543_2364872_-\|DUF3570-domain-containing-protein	unknown	unknown	gnl\|CDD\|378811
NZ_CP013909.1\|WP_068192428.1\|2346757_2347405_+\|O-methyltransferase	unknown	unknown	gnl\|CDD\|226607
NZ_CP013909.1\|WP_068192458.1\|2362994_2363405_-\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
NZ_CP013909.1\|WP_071885863.1\|2347486_2350411_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|379720
NZ_CP013909.1\|WP_068192451.1\|2359051_2360344_+\|M24-family-metallopeptidase	unknown	unknown	gnl\|CDD\|182804
NZ_CP013909.1\|WP_068192468.1\|2366295_2366928_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|379399
NZ_CP013909.1\|WP_068192441.1\|2357188_2357518_+\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP013909.1\|WP_157781018.1\|2361306_2362854_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068192425.1\|2346166_2346616_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366960
NZ_CP013909.1\|WP_068192437.1\|2353166_2356880_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235554
NZ_CP013909.1\|WP_082685018.1\|2365156_2366203_-\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|224394
NZ_CP013909.1\|WP_068192471.1\|2367167_2367578_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068192420.1\|2343794_2344847_+\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|223928
NZ_CP013909.1\|WP_068192443.1\|2357611_2357971_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068192422.1\|2344931_2346170_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP013909.1\|WP_068192418.1\|2342879_2343344_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183019
NZ_CP013909.1\|WP_071885864.1\|2367714_2369547_+\|DNA-polymerase/3'-5'-exonuclease-PolX	unknown	unknown	gnl\|CDD\|236311
NZ_CP013909.1\|WP_082685016.1\|2360569_2361124_-\|DUF4252-domain-containing-protein	unknown	unknown	gnl\|CDD\|379445

Protein	Function_ID	Function_description	E-value
NZ_CP013909.1\|WP_068198450.1\|2364895_2365105_-\|DUF4266-domain-containing-protein	gnl\|CDD\|379460	pfam14086, DUF4266, Domain of unknown function (DUF4266). This presumed lipoprotein domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 50 amino acids in length.	6.51291e-16
NZ_CP013909.1\|WP_157781017.1\|2350346_2352827_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|381615	cd16894, MltD-like, Membrane-bound lytic murein transglycosylase D and similar proteins. Lytic transglycosylases (LT) catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc). Membrane-bound lytic murein transglycosylase D protein (MltD) family members may have one or more small LysM domains, which may contribute to peptidoglycan binding. Unlike the similar "goose-type" lysozymes, LTs also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	2.59759e-37
NZ_CP013909.1\|WP_157781019.1\|2363543_2364872_-\|DUF3570-domain-containing-protein	gnl\|CDD\|378811	pfam12094, DUF3570, Protein of unknown function (DUF3570). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 396 to 444 amino acids in length.	2.06537e-24
NZ_CP013909.1\|WP_068192428.1\|2346757_2347405_+\|O-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	1.74639e-58
NZ_CP013909.1\|WP_068192458.1\|2362994_2363405_-\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	2.39067e-53
NZ_CP013909.1\|WP_071885863.1\|2347486_2350411_+\|TonB-dependent-receptor	gnl\|CDD\|379720	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family. This family includes proteins annotated as TonB dependent receptors. But it is also likely to contain other membrane beta barrel proteins of other functions.	2.74617e-22
NZ_CP013909.1\|WP_068192451.1\|2359051_2360344_+\|M24-family-metallopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	8.446e-104
NZ_CP013909.1\|WP_068192441.1\|2357188_2357518_+\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	1.77635e-50
NZ_CP013909.1\|WP_068192425.1\|2346166_2346616_+\|hypothetical-protein	gnl\|CDD\|366960	pfam02182, SAD_SRA, SAD/SRA domain. The domain goes by several names including SAD, SRA and YDG. It adopts a beta barrel, modified PUA-like, fold that is widely present in eukaryotic chromatin proteins and in bacteria. Versions of this domain are known to bind hemi-methylated CpG dinucleotides and also other 5mC containing dinucleotides. The domain binds DNA by flipping out the methylated cytosine base from the DNA double helix.The conserved tyrosine and aspartate residues and a glycine rich patch are critical for recognition of the flipped out base. Mammalian UHRF1 that contains this domain plays an important role in maintenance of methylation at CpG dinucleotides by recruiting DNMT1 to hemimethylated sites associated with replication forks. The SAD/SRA domain has been combined with other domains involved in the ubiquitin pathway on multiple occasions and such proteins link recognition of DNA methylation to chromatin-protein ubiquitination. The domain is also found in species that lack DNA methylation, such as certain apicomplexans, suggestive of other DNA-binding modes or functions. A highly derived and distinct version of the domain is also found in fungi where it is fused to AlkB-type 2OGFeDO domains. In bacteria, the domain is usually fused or associated with restriction endonucleases, many of which target methylated or hemi-methylated DNA.	1.60908e-46
NZ_CP013909.1\|WP_068192437.1\|2353166_2356880_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235554	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated.	0
NZ_CP013909.1\|WP_082685018.1\|2365156_2366203_-\|FAD:protein-FMN-transferase	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	5.80331e-86
NZ_CP013909.1\|WP_068192420.1\|2343794_2344847_+\|glycosyltransferase-family-9-protein	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	1.86731e-46
NZ_CP013909.1\|WP_068192468.1\|2366295_2366928_-\|thioredoxin-family-protein	gnl\|CDD\|379399	pfam13899, Thioredoxin_7, Thioredoxin-like. Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond.	1.61818e-09
NZ_CP013909.1\|WP_068192422.1\|2344931_2346170_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	2.04526e-87
NZ_CP013909.1\|WP_068192418.1\|2342879_2343344_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|183019	PRK11179, PRK11179, DNA-binding transcriptional regulator AsnC; Provisional.	6.69442e-50
NZ_CP013909.1\|WP_071885864.1\|2367714_2369547_+\|DNA-polymerase/3'-5'-exonuclease-PolX	gnl\|CDD\|236311	PRK08609, PRK08609, DNA polymerase/3'-5' exonuclease PolX.	1.38997e-147
NZ_CP013909.1\|WP_082685016.1\|2360569_2361124_-\|DUF4252-domain-containing-protein	gnl\|CDD\|379445	pfam14060, DUF4252, Domain of unknown function (DUF4252). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 154 and 182 amino acids in length.	1.69809e-18

>NZ_CP013909.1|WP_068192443.1|2357611_2357971_-|hypothetical-protein
MKKNFYFLLAFGVAAALVQSPAQATPLAGNATGIDHAAAPVSMAEASRPVELSTSPTSKSPTGKVRRNTVLAMLGLAESKKVISPAKLNREQHLRQEQLKAKARRESRAHRRRCPKALN
>NZ_CP013909.1|WP_068192441.1|2357188_2357518_+|thioredoxin
MGHKAIEITDANFDEIIAGDKPVLVDFWAEWCGPCRMVGPVVEELAGEYEGKVVVGKVDVDANPQTSMKFGIRSIPTLLVFKNGQIVDKQVGAVPKHVLAQKLEAQVTA
>NZ_CP013909.1|WP_068192437.1|2353166_2356880_+|DNA-polymerase-III-subunit-alpha
MPVFSHLHSHTQYSLLDGQASISALMKKAQKDEMPAVALTDHGNMFGAFNFVAEANKYNVKPIVGCEFYMVEDRHKKTFSREKGERDNRYHQLLLAKDQAGYHNLSKLCSLSFIEGLYSKFPRIDKELLVQYHEGLIATSCCIGAEIPQTILFGTEAEAEKKLKWWLDLFGEDFYIEIQRHGLMNFDGTGKSQEDVNQVLLGFAKKYNVKVICTNDSHYVDQTDYAAHDLLLCVNTGEEHSIPVGDIRTNYYTLLTSNGKVRYDLLDNLRRDHARDEQAQKQLRRIDEELQKPKPHTRFGFANDQFFFKNQAQMNELFIDVPESVDNTNEIVGKITPPKLARDILLPNFPIPAPFANADEFLRELTYVGAFGPGAGNGTVTMTKPPRYSERTPEIEERLDYELRIIQTMGFAGYFLITQDFINHGRNIGVAVGPGRGSAAGSAVAYCVGITNIDPIKYSLLFERFLNPERVSMPDIDIDFDDVNRQKVIDYVVDKYGKTQVAQIITFGTMAAKSSIKDVARAMELPLPQTNDLTKMVPDKPGTTLAGAFAENQELDMIRRDESADNLKGQILRLATQLEGSVRNTGIHAAGVIIAPDDITKYIPVSTSKDSDLLITQFDGKVIESAGMLKMDFLGLKTLTIIVDALRLIERNHGVKIDIDDIPLDDEKTYALYQRGDTIGTFQFESEGMRQYLKDLKPTNIEDLIAMNALYRPGPMQFIPNFINRKHGREEVVYPHDLLKPILEYSQGIMVYQEQIMQTAQILAGYSLGGADLLRRAMGKKDMKKMALEREKFIEGAKKLHDIPAKKANEVFDVMEKFAEYGFNRSHSAAYSVVAYQTGYLKANYPAEYMAAVLTNNMGDIKKVTFFIEEARKQGVPVLGPDVNESLLKFNVNQEGAIRFGMGAVKGAGELAVESMVEEREKNGEYSDIFDFAKRVSLRTVNKKTFESLAQAGAFDGFGKHRRLYLDAPSGDQNLIEKAMKMGQQHQAAKESAQHSLFGAGAFGAVAAPLPKMHEMEPWSKTEQLRREKEVVGFYLSGHPLDSYKLELDAYCTCGLEKVDEIKNKELAVAGLINNVLFKTTKTGQPFCTFTLEDYETSINPALFRDDYTKFAPLINPRNYPNEQVPPMYVRLKQELRRHTQDQWDLRILTMEPLADVAEKRSKGVRVKLDLRTVTGPMLDRLQDAIDHAPGSKRLEIQFVEPHEHLAVDMFSRKFQIEPKTFIQKMHEMEMEVCTLI
>NZ_CP013909.1|WP_157781017.1|2350346_2352827_+|LysM-peptidoglycan-binding-domain-containing-protein
MVAQLPRAARRLVALPVAARSRAVSGFLAKIQVLCSFRAGGGRGGRLLPALFMRNPVVLLLLLVLAGPVAAQPAAPLAHPTVPATMDVAGIHLVLNEEAQRLVQQKADGLSRHQPSFQARVDLADASFPIIDRVLKEEGVPLDFRYLALQESALLGDAQSVHEAVGYWQLKRETAVGLGLLVNDDVDERKHLTASTRAAARYLARNNATLHNWVNALLSYNTGLSGVKPYILPTDVDATEMAITEATSVYVLTFLAQKVAFEPACGLNPRPPLRLQEFPATAGQTLEAQAQLLHVEPDALAMHNRWLLAGAVPADRPYTLIVPIGDVTQAAGIVANQRLQSRGELLTAPAVAANTAEVRLNDLRALIALPGETTADLAKRGGRKLREFLRDNELTAFDVAVTGRPYYLQRKRDVGAVEYYVVQPGETMFDVAQKYGIRKKAILAKNRMSRIEQPSPGRVLWLRHVRPREVAVEYRRLPEGKGIEGSATASRAMADDQMMAPEPVKTAPTRHETARAIAKRKATPGKDEEAEASDGWGESISGTNTPPAASVPAVASVPSVPAPPMRPPAVRPAAPEPVAAQLPPPASAPAPAPLADEPRTAELEVEPEIEPTVSNSPVVEQAPAVTPAPVGPPFKPVAAPAKPVVVTAAPRPIAPKPAAPPVITPAATPAAVANEASHRVEPGETVYSISRRYQVPPATLMALNHLTLPANLAVGQVLVLKSQELPVPAVAAAPVATPVASTRPANQATNRPNPAIYVPKAAAPQAAPAPTPAAGTTIEHTVAKGETLYSIARRYEVKVADIQALNGKLDGNVKVGEVLRIQASAK
>NZ_CP013909.1|WP_071885863.1|2347486_2350411_+|TonB-dependent-receptor
MRLVSLLVFLLIGLAARAQAPTTVSGRVTDGKDQSPLIGANVLLIHLPDSVKTGASADAEGRFQFDNVAAGRYVLDASFVGYQKLSQAVTVNGAPVQLGALALQAGGVQLKGVVVTGQAAQSVQKGDTTQFNAKAFKTNPDANAQDLITKMPGVSVGTDGKVQAQGENVQRVLVDGKEFFGNDPDAVLKNLPAEMVDKVEVFDQRSEQSRFSGFDDGNTTKTINIVTKVEFRSGTFGRVVAGAGPDRYKASGNVNNFKGDRRVSVLAQSNNVNEQNFGTEDLLGVVGNSNQGGGGRGGRGGGGGQGGGGNGGNAGDFLVNQSGGITKTNAVGLNYSNSWNKKTDMSASYFFNRANNTLLSSTQRQYVLPQQASTTYTQSANTNGLNTNQRFNMRLEHKIDSANSILFRPRFSYQQNDAGSNVVGLTRRSGTEQSRITSNYASDNEGLNTGGDLLLRHRFPKAGRTASLSIGGTYSQRDGNTTLRTLDTGSALNSLNQTSTLRQHGGSMNANLSLTEALTKQDVLQGNYAINYAPNSSSKYTYDLLTGDTKQQNDALSNVFDNYYLTQSGGVTYRHITPKYQASVGLSGQYSELYSDAQFPRASIGRYYFVNVLPNANVNYRFTRQKNLRFNYRTNTNPPSVSQLQAVVNNSNPLQLTIGNPTLRQEFQHSVNFRYTASSPEVASNFFALLSGSYTQNPISNRTLVASRDTTVVPEGAPGVRLPAGGQLTQPTNLSQQYTVRSLISYGRPIKPIKTNVNLSANANFTQTPGIVNGGLNYARVPSFGAGLTLSSNISPNLDFTASTTSSQNFVRNTLQAKLNTNYFAQVTRFRLGWIVGPGINFQTDLVHQAYSGLSAGYNQQYLLWNASLGKKIFPGQRGEIKVYAFDLLGQNRAIQRNVTEAYYEDVQTTILQRYFMLMFTYNIRSGNVVAPSSGGEGRRERGFGQPGGYGRPDGGAAPAGGPPAGGPPGGGPQ
>NZ_CP013909.1|WP_068192428.1|2346757_2347405_+|O-methyltransferase
MTNNDPIQAYAEQHTAPEPPLLAQLTRETHLQTLLPRMSSGHLQGRFLSMLSHLMRPRRVLEIGTFCGYATLCLAEGLAANGLLHTIEIDPEREARIRRYVAAAGITEQVRLHIGAALDVLPGLVDEVWDLVFIDADKRSNDAYFEAVIGQVRPGGLLIVDNVLWSGKVLPTHEVKSGDKDTPFVRAFNDKMAQDARVEPVFLPLRDGLLLLRKK
>NZ_CP013909.1|WP_068192425.1|2346166_2346616_+|hypothetical-protein
MSQPVFGHVGSYRPGDTFRNRIDLSLSGVHRPRRTGVCGTQLLGAESIVLAGQYEEDDFGEDEILYSGNGGRDPKTGRQIMDQMATTGILALLKSIETKLPVRVMRKVPAEGDGLDVYRYEGLYQVVDFTYGPGKSGFQVYVFRLRPIF
>NZ_CP013909.1|WP_068192422.1|2344931_2346170_+|insulinase-family-protein
MPDYEIHEYPNGIRLLHKQVPHTKIAHCGFLLDIGSRDEAPHQQGLAHFWEHMAFKGTEKRKSFHILNRLETVGGELNAYTTKEKICFYAALLSTHFERAFELLTDLTFNSVFPGREVEKERGVILEEMSMYQDAPEDAIIDDFDTVVFGDHPLGVNILGTRESVSRFQTADFHAFLQEQMRTDRLVFSSVSNLPFKEVKRLADKFLAPLPAKIGPRVRRPVGSYERKTQVESRPISQAHCLLGGPAYSIGHKRRIPFFMLNNILGGPGMNSRLNLAVREKYGLVYTIDSTYSPYTDTGLFGIYFGTEGKQVKRTLGLVQKELKLLREKTLTTNQLHTAKHQLMGQLAMSEESNSGLMQLLGKSTLDLGRVEPLSEIFEKIELISAAELRDMANEVLTDEHLSVLQYVPEGK
>NZ_CP013909.1|WP_068192420.1|2343794_2344847_+|glycosyltransferase-family-9-protein
MPTAPPATLLIQTAFIGDVILMTALLEHLHHTEPATPVDVLVRRGNEGLLAGHPHVRQVLIWDKKHRKYAALWQLLRQIRATGYGRVVTLQRFASTGFLTAFSRAPERVGFAKNPLSRFFTRRVPHTIGDGTHEVARNLALLGASLNKELRASNSSFFIPRSSLTRPKLYPSAADEATAATFAAGEPYVCLAPTSVWFTKQFPEEKWLELLAALPAGLRVFLLGGPPDVAPCERLAAASGRANVTNLAGKMGLLASAALMRGAQMNYVNDSAPMHLCSAVGAPVTAVFCSTVPEFGFGPLSPVSFIVQTREPLACKPCGLHGHGACPLGHFRCAYTIEVDQLLHSLNSVG
>NZ_CP013909.1|WP_068192418.1|2342879_2343344_+|winged-helix-turn-helix-transcriptional-regulator
MARNYELDDTDRNILNLLIQDAKMPYTEIARKVNVSGGTVHVRMARLEEIGIVQGATLRIDYQKLGYGVNAFLGIYLLKSSVYTSVVNQLREIPEVVSIHFTTGAYGVFARLVCRDTQHLRDVLHDRIQPIDGIERTETLISLEEVINRPAQLT
>NZ_CP013909.1|WP_068192451.1|2359051_2360344_+|M24-family-metallopeptidase
MRYTPLAPELFVENRRRFREQLPPASLAIFQSNDIMPTNADGTLAFRQNNDLFYLSGVDQEESILVIFPDARLPQHREILFLKETSEHILIWEGYKLTKDEARTNSGIRSIMWLDSFKTVLPALMNEAENVYLNSNEHIRAVVEVETRDARFIKALQSQYPLHTYRRAAPLLHRQRAIKSPEEIRVMREACNITEKAFRRLLGFVKPGVWEFEIEAEIVHEFMRNRSRGPAYGSIVASGKNACVLHYTTNDNQCQDGDVILLDFGAEYANYAADLSRSIPVNGKFTARQRQVYDSVLAVMTFAKTRLVPGGEIEAYHQAVGECMEQELIKLDLLNASDVKNQDPAAPLYKKYFMHGTSHYLGLDVHDVGYKYRTFEAGMVYTVEPGIYIPEEGLGIRLENDILLTPNGNEDLMANIPLQADAIEDLMGKA
>NZ_CP013909.1|WP_082685016.1|2360569_2361124_-|DUF4252-domain-containing-protein
MITKLRLPALFLFLLMVGCRAAGPGSPARTVASFFSKYEGREGFKTTEWSADLLQRLALVKAAKLLGGSDLTDAITGIRSAKVISFAPTSGAARELAQQGLRQEATGILQGEKYTPLSTSGFGGSDYAVSTRGSGDKVSEFAALGSLPDVADSFVLVSVQGNFTSSQVAALSKYLPQIVQATSK
>NZ_CP013909.1|WP_157781018.1|2361306_2362854_-|hypothetical-protein
MLASLPAARAQKRPDAPTPPDAPAQTARTELPLTAFESEVHVQALPADSTVVLLVGRNKGLSNKSTFGFQQYDKDLHLRHELALEMPQEFGFTRMCAEGNTVYALFTSTSTPGRLFAAAYNGRLGQVRTQQYDTRLSREIVDLKALDGRLFATVLLNDQLHVTALLLDVASGQMQYLSSIYEPLPTQLTFVADAASRRAEYVLSQTNGRKSRLLLKQLTDRGQLVSSEFVQAESERSLITAQLTPPQDTTARLLMGTYSLRDPSFAQGLFATDLRPTAGTGAKPPLRFYDFLHLKHFFDYLKPSRQARLREQTQRRVARSEPPKRWHYRLLLHELLPQPDGGYVLVAEVYYPHYRYNSYGNLPPSFYNGPQYGYGNGNARVFDGYQTTHALVCGFDRSGTLLWDNTFVVENLRRTDLEEAVRLQPLPDGRLVLAYIDEEKLRYKVINRAETSSNDHEVPLQTGTGATAAAERVSDTSQADLLPWFGTRFVASGYQRIHVDHGPDREVFFLNSVAF
>NZ_CP013909.1|WP_068192458.1|2362994_2363405_-|EVE-domain-containing-protein
MKHWLVKSEPEAYSWATFVAEDGTAWTGVRNYQARNNLNLMQPGDLVLFYHSVSEKAVVGIAEVAALAAPDATAEAGSPWVAVALRPVEPLPQPVSLAQLKADARLGELALLRQSRLSVLPVRPEEFDAVLALSAK
>NZ_CP013909.1|WP_157781019.1|2363543_2364872_-|DUF3570-domain-containing-protein
MKKLLATLGIWSALAAPALAQTTPGTTQNPNRIDGYGAPVSPSVPVNRAADETTIDIIGGYYRQDGTHGAVEGGRGTEHLTDVPPAIIVNVPLDTVSRLTANVGADFYASASTDRIDFALSTPSAHDTRFHGDFGYSREHKYKGTIWGVGAGVSKEYDYFSVNGTGSFAKTSRDGNRQLSLAGHIFLDQVTLITPIELRTTPTRGKSEYGTDTRQTYNLTATYSQVLTKRLQAAISTELVSQNGLLSTPFHRVYFYDSTTPNPVTSVDAANFSSRVPTAPKTELLPRSRFKYPISLRLNYFATDVVQIRAFYRLYNDNFGITAHTAELELPVKVTPFFVLYPFYRYHTQTAAKYFAPFLQHSISDEFYTSDYDLSDFSANKVGLGLRYSPVYGISRFHVPGQNAAGQPRIMRLKSLDLRYAHYQRSTNLVANIVSFDLGFAL
>NZ_CP013909.1|WP_068198450.1|2364895_2365105_-|DUF4266-domain-containing-protein
MGLALVLLPLGAALPSCVSVAAYQKVYLNDEDMKLSSKIVETPETNFESYREGAGGANGGKVGGGCGCN
>NZ_CP013909.1|WP_082685018.1|2365156_2366203_-|FAD:protein-FMN-transferase
MPSWKPAPVLTLLLSLLLFSGCPGRAQTAPQRHTFTRSAHLMGSRFTFTVVAPDDSTGQRALRAGLSEVQRIDHLMSFWDSTSEVVRINRMAGVRPVAVSPETFDLINRTLRLSRLSDGAFDITFASADKLYKFDRQPHAGLPDSALVRASVRRIGWQKIKLDPAQHTMYLPEKGMRINLAGILQGYGIRRAKQVLEAKGIKGGLLNGSGDIYCWGRQADGSLWRVAIGDPDHPRSVAAWVDVTDVAVVTAGNYEQYFTVGSQVYGHIINPHTGYPSIGLRSVTIICPDVELADGLDEVVFVKGPTAGLAFINGLKNVDCALITDDNRTLVSKGMKLNYYRGSATTHP
>NZ_CP013909.1|WP_068192468.1|2366295_2366928_-|thioredoxin-family-protein
MSFIPSVSPVRAFVLALGLVAAHSVQAQQAAVKVKTKTSDAAGNTVSKSKVVTPAPVASAPKPVSPLVSSPQVILPAQADGNTTWLTDLSAAQAQAKATKRPILAVFSGSDWCKPCIIYEQEVFAKPEFAAYAKDRLVLAHFDFPRQKRNQPTAAQVKLNEAAAAQLNREGDFPLAVVISPEGKVLAKTGYIAGGPTAFEAYLKKVVPTL
>NZ_CP013909.1|WP_068192471.1|2367167_2367578_-|hypothetical-protein
MLRLRSLFRLLLPLLLVLAASCQRRRAVPIPAMKKLEGTWLLSREENSEDILVYRPNTYAFPPSRGRTGFAIKPYGRFEQFDIAPTDGLAGRPGAWTLDRGTHLRVNLTEGPDPSYTLEIVSLDTVKRILKVRRLP
>NZ_CP013909.1|WP_071885864.1|2367714_2369547_+|DNA-polymerase/3'-5'-exonuclease-PolX
MDNRALTRAFKLAAQLMELHDENPFKIRAIEGTANALDALSFPVSEIERSGLPDRTGLSKTAAAKVAELLDTGTFPELRHLLEITPPGVVEMLNIKGIGPKKIRALWRDLGIESAEQLREAAEKDLVSKLKGFGKKTQDSILEALEFAGQSKGKLLYPQAESLAEQLCQQLRNGLKTEKVAVAGEIRRRLETVETVRLVAATDRPAQAHLLLNSLEGLTPNPHRSGPFAWRGTATESGVQVEVLLTTAEAFTTELFLNSAAEEHLNEPLPGVQGHGGGAPATLRQWARRETFQQEEALYEKAGLQFIVPELREGLGEIELAAEKKLPRLLEDSDLRGSLHNHSTYSDGNHSLREMATFLRDHNYEYLGICDHSQAAHYANGLGVERVRQQHQEIDKLNAELAPFRIFKGIESDILSDGSLDYPSDVLASFDFIVASVHSNLKMDERKATERLLRAIENPYTTMLGHPTGRLLLRRQGYPIDYKAVIDACAKHQVIIEINSNPWRLDLDWRWVRYAHDQGVMLSINPDAHHTDGYADMRYGVLMGRKGFLTKEMTFNAKSVEEAAAYFEKRKAAIKPRWNTKSRCLSKRQAPLLTKEGTLARSASWGGCGR

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Crispr_ID: NZ_CP013909_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013909_5

3728167-3728303

Orphan

Consensus_repeat	Method
GGCACGGGCAGCAACAACAGCAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP013909_5

>merge|NZ_CP013909|5|3728167-3728303|CRISPRCasFinder
TCCACGGGCAGCGGCAACGTGATTGCGACCCCCGTGGGCCAGCGCAACCTGATTTCCGGCACGGGCAGCAACAACAGCATTTCCGGCCTGTACACCAGCGATTCCCGCATCCTGGGCACGGGCAGCAACAACAGCAT

>NZ_CP013909|5|5|3728167-3728303|CRISPRCasFinder
TCCACGGGCAGCGGCAACGTGAT	TGCGACCCCCGTGGGCCAGCGCAACCTGATTTCC
GGCACGGGCAGCAACAACAGCAT	TTCCGGCCTGTACACCAGCGATTCCCGCATCCTG
GGCACGGGCAGCAACAACAGCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013909.1\|WP_068195570.1\|3733343_3733910_-\|antirestriction-protein-ArdA	unknown	unknown	gnl\|CDD\|377800
NZ_CP013909.1\|WP_068195537.1\|3714922_3715270_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068195534.1\|3714468_3714888_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068195567.1\|3732453_3733287_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068195560.1\|3729470_3729926_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_157781117.1\|3731661_3731811_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068195564.1\|3730493_3731240_+\|VRR-NUC-domain-containing-protein	unknown	unknown	gnl\|CDD\|214959
NZ_CP013909.1\|WP_068195556.1\|3729123_3729309_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068195549.1\|3727307_3727865_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068195546.1\|3722750_3727298_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068195527.1\|3713668_3714013_+\|HK97-gp10-family-phage-protein	unknown	unknown	gnl\|CDD\|377415
NZ_CP013909.1\|WP_068195524.1\|3713352_3713679_+\|phage-head-closure-protein	unknown	unknown	gnl\|CDD\|377521
NZ_CP013909.1\|WP_068195542.1\|3715646_3718907_+\|tape-measure-protein	unknown	unknown	gnl\|CDD\|131723
NZ_CP013909.1\|WP_068195544.1\|3719003_3722648_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068195578.1\|3734335_3734773_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068195530.1\|3714016_3714463_+\|DUF3168-domain-containing-protein	unknown	unknown	gnl\|CDD\|378648
NZ_CP013909.1\|WP_068195576.1\|3733982_3734276_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068195562.1\|3729928_3730303_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_157781116.1\|3731366_3731516_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068195540.1\|3715395_3715629_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013909.1\|WP_068195570.1\|3733343_3733910_-\|antirestriction-protein-ArdA	gnl\|CDD\|377800	pfam07275, ArdA, Antirestriction protein (ArdA). This family consists of several bacterial antirestriction (ArdA) proteins. ArdA functions in bacterial conjugation to allow an unmodified plasmid to evade restriction in the recipient bacterium and yet acquire cognate modification.	1.78953e-24
NZ_CP013909.1\|WP_068195527.1\|3713668_3714013_+\|HK97-gp10-family-phage-protein	gnl\|CDD\|377415	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component. This family of proteins is found in the caudovirales. It may be a tail component.	1.83727e-08
NZ_CP013909.1\|WP_068195524.1\|3713352_3713679_+\|phage-head-closure-protein	gnl\|CDD\|377521	pfam05521, Phage_H_T_join, Phage head-tail joining protein.	3.26442e-10
NZ_CP013909.1\|WP_068195542.1\|3715646_3718907_+\|tape-measure-protein	gnl\|CDD\|131723	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.	7.90948e-06
NZ_CP013909.1\|WP_068195530.1\|3714016_3714463_+\|DUF3168-domain-containing-protein	gnl\|CDD\|378648	pfam11367, DUF3168, Protein of unknown function (DUF3168). This family of proteins has no known function but is likely to be a component of bacteriophage.	2.45657e-06
NZ_CP013909.1\|WP_068195564.1\|3730493_3731240_+\|VRR-NUC-domain-containing-protein	gnl\|CDD\|214959	smart00990, VRR_NUC, This model contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI.	7.43823e-07

>NZ_CP013909.1|WP_068195549.1|3727307_3727865_+|hypothetical-protein
MPSITSNHFVGTTAIAPWVFVSNSSTGITQVVDGTNPGVQRSGRALTNGTTFFKLTTDHVSLGVPAGATMTSVTLTFQYHVPTYTTGASSSVGASAISADGLTSLQGFSNVTGLAAANATFLTTASNTWTPTGLYTDPATVMNYYLYVQPNTGASNTAKVIIGVRNIAITVNYNVKNTGAFFCFF
>NZ_CP013909.1|WP_068195546.1|3722750_3727298_+|hypothetical-protein
MPVSLNKYRIKDLLALTQEADLINKIFEVESGSGTDQSFKVSFPTVVQTVANNLPGGNNAKVAIKTARCYDATAVNYSPGDETLVGLNPDFLCLFTTCRVEFPHPSTEYLLVYDGTPGAPLQVWRDGDFTGQKIGAKWVPVGSIDAQVQGIVDFSPFAFSYAQDATVKYTLNGQLRLFTAKQELVKATFTPSQIPAPTGLNTDANWQEINAGATSVVRDFLPGSYKKDQVVVFNGTQYRAKQDLVIGDFVNQAGTYDNFPDLDYWQPLNSGGGVSYDDTALTARVLGTENALDALTTTEQAHYTELNNRLNALVSTAPDYVPGSYVKGQFVTNAGNVYIAKQNIANSTAAPTATNVYWLQLGGGSGPATVVEQTLGSNSTTSVPSIKATADALVPKADKTYVDSQNVLKVDKVTGKQLSTEDYTSAEKAKLAGLVSDVPNQNSLAPASATVSPTVDAVNTGLALKVDKIAGKGLSTNDYTTAEQTKLAGLNNAPANQNSLTPASTTLAPTVDAVTGGLSGKVDKVAGKQLSTEDYTTTEKIKLAGLANADVNKAYVDAATATLQTNINAKAADNAVVHLAGTETLTGSKTFSGDLNLSGSATLWLNSGNTLRMSGRMDLRTTDFNASKTHDNTGQHQMYTGTGGHTLTLPQLSGSTYQTFWVENIGTGDLTIATTAPNTILVNNTSVSTALLSPGETLMLVHRSSASTNWVGSYQGGSKPSTVGKVQNALTPASTSLAPSVDATTAGLALKVDAVAGKGLSTNDYTTAEKTKLAGLTNADVTKSYVDTADAALQSQLTALQNTAAVDVYNVSQALREAVVQGTFNDSNELTTAVTGSVSGMRFTYQTYDYEYMPGDLGTLVWVRNYKKGSVTYAGGTGGEAAQNGLSPASATVPPSVDAVNAGLAAKADKTYVDSQDSALQNQITSNTNGLATKADKSYVDAQDTGLQNQITSNTNALTTKVDKVAGMGLSTNDYTTAEKNKLNGLTTVAAGTNIGLDTTTTPGSTIISNTMPAASGTVSGYLTSANWNTFNNKQNAIVNTDALTEGTTNKYYTDARARASVSATAGSALTYNTGTGVFSLPVATTTASGYLSNTDWTTFNSKQNTLAAANGTTNGYLTSTDWTTFNGKQNALSAASGTVSGYLTSADWTTFNGKLGPTTTTTAIGEGTNQYFTTTRVLNTALTGLVTTTSGTPVAADTMLAAWNKVTNFITNITATIRAVTLGTYSKAATQTAIATTDTTPLALGKLEKKADDAIASLANKSDVGHTHTASQVTDFNTAADGRINLMKNVAGGIPQLDASAQIYASLLPIATTTSLGAIKPGTNLTVAADGTLNASGGSIVPATTTTLGGIKVGNGLLVQPDGTLATNGTGGTAYTLPLATPDTLGGVKIGQNLIANPDGTIGVYRVLPRTNYVGVSGTLTASMDNQDQFGYLLAGSILINDNTTFKNDGQKVIFRIAQQGAGSLYSVTWSSAFRFPGGTAPAMTQALSKTDYYGFTWNAGTGFWDCVAITQNL
>NZ_CP013909.1|WP_068195544.1|3719003_3722648_+|hypothetical-protein
MAKTLIKTTCDLQPDNSYSKTSIYYTTGLLARGLDPITTVTEPAISCSVFTMPAGTQLESFCTLDSNGAGVRRIIKFIDIQFLNWQSTEEVADSACDFTCDLNSPYVSATPTTTPTSTDGKIRLDVTTTYPPIVVYNATLGSPTTNTLYSAPGITPATYIVNYDNVAPGTYAFAIQDNNNCRFTTAPVVVAVGSAPGTGSGQHYDWFKYELTGNGFAKGTPFQLQGWAWSKATKVPYQVTGVPITYPNFYQQATYQKGDIVWYSNQGVSTNWQQAFFRATRDLKPADFPPTNAVPAPNRYGQSTAEWENVGTFYGGTIYYTTGAGFAGVPVSEPYFTGYRTPATSGGWWYYEENSVTRYGWDSFYRAKKRIESKYFTNHLMDAPPTRPDLWEKVNNYDTFYYAIPEQQAIDQYTIGTLARTVRYHLFNPQQLMYVPTSTDFQRVDGFDFVLFDDTTPGVETQLGDLVVLDVIKNDIDERGAENGSVAILATSPSMPIQYHLRNGVRTGYVQDNTTGIYERLSPGRYAVDITDANNRYASVEFDIEDRYQARWKLTFDDVDAEPLEIQFFERDWTGPVTDVCGTDTPVILSWDHGGDPAGYLPEAVGANLQFNVRTEVAQQFVDTILKDDRNHRIDYYRGGKLHFRGYIDATTYQEALLSPGQTVTLTATDGLGQLKNTKFINHRRERQVGRTSMLSILLKCLSFCDVNLPLYCGNNLRDELMTANGDPYLEAYVNRSTYDQKDGEVIKDEDIIDCRTVLDAILRVFNAQLFQADGSWRIIALNEVHDVFATRVFSPAGTLLTGMDTTMPPLRILPDQDATGPRELYWINSTQSRTTVAAAQILKATIDLKLEANLLRNGEFAEWDAANTRPLYWSTQGTPGVTRAKGEKAKEYAVQFAGYSTTLSPSNYLLSPAAPHLEGQDEDGMVVEFKAQLTPTTQNPAELTATLNFQVVCDGAPVGPLLPVLISSKDKWKKHTLNLPMGLPGTSVRVRLIKPVATDVASLASTLSVSYVALAIQPGLVDWSDVKQDFVEVENNEGITTGIRLDDVELAHADLPLLPAFNSKAMAPKKMDVYAWRHAVSLADFTATTAWKRPGYPNTAPLLDNAAQDRMALRSVPSSEVTGEVAGPGIHFLRIGLMLDMPEDLEGKFLVLSCFKNERMGTARITVRKLGDGYYGNAQPDVPDDARIGYKNGRLGYRISVVNGAEGFRTAQP
>NZ_CP013909.1|WP_068195542.1|3715646_3718907_+|tape-measure-protein
MDLEYLKVAIDCKIDDFEYGIKQAEKGLGRLSSYAKETGESLSKYVTLPLSLLAGAAIKTAGDLQALEKGFAAVYKGAGDVGLELKKLQEVAKLPGLGIKEAEQGSIRLQAVGFSAEEARKALMAFGNAIATTGGGKNELDRVTVQLAQLSAKGKLLAQDLRPIIEAAPAAASALQRLYGTVDSEAISASLQKQGKSAQDFITDLTGELAKLPKVTGGIKNALENLSDSGTIALAKLGDSLNKSFNLESVAERLGNTLTGMADSFSQLDPATQKTILGLGGVAAATGPVLLTVGALGQALPIAIKGFEAFASVGKLLVTSLGPVGIAIAAVTAAAVYFIATYETVEDKFNKSAKAADDLDAQLTPLLKTYDDLTAKSKLTSAEQETLAGTVKQLAALLPGAATAFDKYGNAIELSRTKLVALQKAKQQVVVDDAIAALPEQNKKVREAADAVKFYVDRLNQIKKFGGFYTGGANGTKPALIKVGQEEEAAYRKQQATLGTILEEELQKRNDMAKRLGITQQSLDDNFVVREGYAQKLNKSQDALNQKKEVENKLTREGLEERKKALLAERDLVDRKATGSTVTNKAEVSKITKEITKRETQLLDVRLNPDTKKVLLQEIAALKASITRKGDARIAEINLDVASIDKQIKAIDELGVGSKSDAKKKAKEISELARANEAFRDGLRQMNLEYKIQGETFDVGAAKAQVYKTYLDKLIQLDKTGKVEDSPKFKKAMEEYQLLTIASERFQETAKLKGIFENTEATIKANGEAILALGMTADDAKERVKVLESQLRASLNGVESLQKAGAGENDEFLLAERQHAKELTAELEKARKAAAQAKRDADTDDLLESLNGGTGSKASTNFKDLASGKAQDELEERIRKAQDAVHDLQKDGADDVRIKQAQDAVAGLKGQLDLTDVYAGAAQQASESLGEIATVILGGIGGIITGQMSLTDGLASIFSKTLGIVGNFMKDFGKQLLLLGAGHVAMGLATANPAMVTAGGLELAAGGALYLGGTIMSAIGSAAAPSSSKASTPQTSASATPGSGTSSKDKQNVNITVTFAPVELRAEGAALRSVMRVDNYRLTQNR
>NZ_CP013909.1|WP_068195540.1|3715395_3715629_+|hypothetical-protein
MTWNEYQRRVNGYNQRQWHEWDRTRRIACEVYNNMNEKPVDYRKYITLPTDDLEGEAKAKLAADLAFFEEMKAKGRI
>NZ_CP013909.1|WP_068195537.1|3714922_3715270_+|hypothetical-protein
MEIKERGFGTMTIGGKDRGFHIGTYQSKVFCDTRGIKLDDYFEELNKFNFTNSMANNQFVCDLLYSALVAYATFHDEPIDFTPVKVTFWADMASPDEVAKLFVVMAEMRRDTPKK
>NZ_CP013909.1|WP_068195534.1|3714468_3714888_+|hypothetical-protein
MASEILATNVVIKINDKVFGCAQSASFSTKVEMTGVVCSATGGFKKQVPGMESWDGSLTAIVRTFPTAEVASNVTLREMYTSLREKTLVDVEYELGGVDGFIFSSKAYLSNVDISVPEGSGAVTWTANLVGAEPLLLGA
>NZ_CP013909.1|WP_068195530.1|3714016_3714463_+|DUF3168-domain-containing-protein
MPSVDLVLQKALYGTLSTAGLTFNGNPVSVYANVPPTAGAPYVVLDQISTVPLNGNVACKHWESVFQLTVLTAFEVAGQVSDLPGLDIQGQIMAALDDQYLPLTDGFQMHPIQVSQTRKLSRFTQNSVEVLRYITLKMRVYQEKNRDE
>NZ_CP013909.1|WP_068195527.1|3713668_3714013_+|HK97-gp10-family-phage-protein
MTVKLEGAESFLGKLRVYATGASKRVQQTVAASLLQIESDAKDLAPVDTGLLRGSIHANLSGRLAGSVTVSVNYAKWVEFGNGRNKPQPFLYPAYHKNKAAFLANLKEALKFRF
>NZ_CP013909.1|WP_068195524.1|3713352_3713679_+|phage-head-closure-protein
MSNAGKYRERVTFYTPGATVSDGAGGQLPAGPETSLTLWARVQALPAKEDLISGKIVPRQPYKVTIRYASSLSNSTRMECNGKHISVTSIVSNERTTEIYLYGVECDS
>NZ_CP013909.1|WP_068195556.1|3729123_3729309_-|hypothetical-protein
MKFLKRLSPFFVLLLLLLVPPLVDYRFTGGFGPLTYTCESIGALAVFALIIRGIANQAKDK
>NZ_CP013909.1|WP_068195560.1|3729470_3729926_+|hypothetical-protein
MQFPILAGLLKELWLVITLFTGAILTVYKIHLDKKTAAHKLQEDTTVKEKADLLARLKKMEEEIHNNTNKHMAAQLEREKNMDAMDVRFRVMEHKVSQVDTLVVEINGVKTRQEVQNALITTMDAKISEMKSESKAQFNEVLYLLKERRDK
>NZ_CP013909.1|WP_068195562.1|3729928_3730303_+|hypothetical-protein
MNASKFWEDVLTNDKKKYSSNAVMRAVVFVLGCCFATAAVVGDFMGVVIRLDPAVLAWSLAFGIAGLRIGEAWLQRKTADSTGAPLLQEGTAVAPSEPVVAAPPVSPANVTQLTTPTEGELADQ
>NZ_CP013909.1|WP_068195564.1|3730493_3731240_+|VRR-NUC-domain-containing-protein
MPTVPAADKKKLTSLLRRTVSGATITNHRFGVLLTANGQTQLITTAVANVKPFHVTFTVEVWNTLFDAAAKAHAALSYAVVDNLGLNVELLPLTALDLKHPDHKNVVVQSVYSKELEEFVSAEVVNIPRGLANHAVVPESKWSEYELQAVCVDYLRRVRPDLLMFSIPVELAHPTWARHVKSGVVAGVADCCILGPNGSATWVEFKIKGNTLRDSQVAFGETCARLGHVYCVCYTLEEFNSLLVSIGR
>NZ_CP013909.1|WP_157781116.1|3731366_3731516_+|hypothetical-protein
MKTKMTKRQRQEYQFRNMLTIDLVRMRNLGLITPESFQTALGSLWITIA
>NZ_CP013909.1|WP_157781117.1|3731661_3731811_+|hypothetical-protein
MTKSERRQLNFRNAMLRDLLLFLQQGIITDQTFNTVVNSLEYVVTRKEK
>NZ_CP013909.1|WP_068195567.1|3732453_3733287_+|hypothetical-protein
MDRPYYSQRAGKVKNGLSLDELKQGFLAFYNDFDRDGYFQQHLGYQCVDRGFVPGLAGKELHIDLLVALRKTNLWPFEDTIASWTEDDLFDVVEYLYDRVSMPKSGNYHDYDNCGWHYYKFDQAQGRASYRARMNRVLGAYDEGFELSETGEVLSLADEGLKPLLEAEFPAITPENVRGPMLAAIRKFRRHRATAEDKLGAIRDLAAALEFIRPQVKHFFDKDESDMFNLANNFAIRHNNGKQKERYDNEIWYSWMFNYYLATLHATLRMIARQDQA
>NZ_CP013909.1|WP_068195570.1|3733343_3733910_-|antirestriction-protein-ArdA
MTLQDNTPRVYIASLADYNAGQLLGRWFELDDFTDADDLLHAIQGMLTIYDDTYGPLIGTKREEWAMHDAEHLPKRFVSESPDFAAIYEYLDAIADMDEDIATAYELFVNNGDDPSQFRDRYLGRYGDGYEYDDERVAADYAEQSWFEYHDEKEIPPSLKNYIDWHSMGRDLVLGGDVWISDGFVFRS
>NZ_CP013909.1|WP_068195576.1|3733982_3734276_-|hypothetical-protein
MTISLYKPTEEPLLLTPTQFSADIHCNGQLPVDRVAELLGCAKLLVDVLASGPDYVMYSVFDCEGEINPIAMEVFEALTGEPCEDDPLRGPILCLCL
>NZ_CP013909.1|WP_068195578.1|3734335_3734773_-|hypothetical-protein
MMSKKTTTAKVAAAIENAPEVEQNEVVDFASESNPTTEVPVASETVAEAKKRERNYSQSAINTADIERLTQLKVFVKEKLKVNVSNQRIISAALDCLGEHVESFLKGIAEDANSKQREKDQKAFEALRAKLETPTEPEASHTEAA

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Crispr_ID: NZ_CP013909_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013909_6

4529983-4530133

Orphan

Consensus_repeat	Method
GTTCGGGCACTTCTGCCCCCGATAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP013909_6

>merge|NZ_CP013909|6|4529983-4530133|PILER-CR
GTTCGGGCACTTCTGCCCCCGATAAACTGCCTACCGGGGGCACTTCTGCCCCAAGCGGTTCGGGCACTTCTGCCCCTTGTAGCGCGCTTTTACCGGGGGCACTTTTGCCCCTGGTAGCGGTTTTTACTTCGGGCACTTTTGCCCCCGATAA

>NZ_CP013909|6|1|4529983-4530133|PILER-CR
GTTCGGGCACTTCTGCCCCCGATAA	ACTGCCTACCGGGGGCACTTCTGCCCCAAGCG
GTTCGGGCACTTCTGCCCCTTGTAG	CGCGCTTTTACCGGGGGCACTTTTGCCCCTGGTAGCGGTTTTTACTTCGG
GCACTTTTGCCCCCGATAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013909.1\|WP_082685208.1\|4532828_4534142_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|369881
NZ_CP013909.1\|WP_068198937.1\|4537947_4538508_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|376570
NZ_CP013909.1\|WP_082685207.1\|4531082_4531925_+\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|119397
NZ_CP013909.1\|WP_068197181.1\|4526950_4528231_-\|sodium:proton-exchanger	unknown	unknown	gnl\|CDD\|223604
NZ_CP013909.1\|WP_157781173.1\|4532393_4532792_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068197213.1\|4536829_4537558_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|376570
NZ_CP013909.1\|WP_068197161.1\|4514853_4515285_-\|response-regulator	unknown	unknown	gnl\|CDD\|381108
NZ_CP013909.1\|WP_082685314.1\|4528662_4529349_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068197172.1\|4521947_4522508_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_CP013909.1\|WP_068197218.1\|4538563_4539004_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068197194.1\|4530426_4530720_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068197179.1\|4526398_4526638_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_068198931.1\|4520057_4521644_+\|c-type-cytochrome	unknown	unknown	unknown
NZ_CP013909.1\|WP_068197183.1\|4528266_4528656_-\|VRR-NUC-domain-containing-protein	unknown	unknown	gnl\|CDD\|214959
NZ_CP013909.1\|WP_068197207.1\|4534183_4534555_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013909.1\|WP_082685209.1\|4534768_4536658_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274573
NZ_CP013909.1\|WP_068197170.1\|4518815_4519748_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|184875
NZ_CP013909.1\|WP_068197166.1\|4515306_4518573_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP013909.1\|WP_068197175.1\|4522863_4526211_+\|class-I-SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223934
NZ_CP013909.1\|WP_157781172.1\|4530722_4530983_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013909.1\|WP_082685208.1\|4532828_4534142_+\|PAS-domain-containing-protein	gnl\|CDD\|369881	pfam08447, PAS_3, PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.	4.72626e-18
NZ_CP013909.1\|WP_068198937.1\|4537947_4538508_+\|GAF-domain-containing-protein	gnl\|CDD\|376570	pfam01590, GAF, GAF domain. This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyze ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regulating catalytic activity by binding to the regulatory GAF domain(s). The opposite hydrolysis reaction is catalyzed by phosphodiesterase. cGMP-dependent 3',5'-cyclic phosphodiesterase catalyzes the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. Here too, cGMP regulates catalytic activity by GAF-domain binding. Phytochromes are regulatory photoreceptors in plants and bacteria which exist in two thermally-stable states that are reversibly inter-convertible by light: the Pr state absorbs maximally in the red region of the spectrum, while the Pfr state absorbs maximally in the far-red region. This domain is also found in FhlA (formate hydrogen lyase transcriptional activator) and NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.	2.93325e-10
NZ_CP013909.1\|WP_068197175.1\|4522863_4526211_+\|class-I-SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223934	COG1002, COG1002, Type II restriction enzyme, methylase subunits [Defense mechanisms].	1.25412e-11
NZ_CP013909.1\|WP_068197181.1\|4526950_4528231_-\|sodium:proton-exchanger	gnl\|CDD\|223604	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism].	1.05883e-18
NZ_CP013909.1\|WP_068197213.1\|4536829_4537558_-\|GAF-domain-containing-protein	gnl\|CDD\|376570	pfam01590, GAF, GAF domain. This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyze ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regulating catalytic activity by binding to the regulatory GAF domain(s). The opposite hydrolysis reaction is catalyzed by phosphodiesterase. cGMP-dependent 3',5'-cyclic phosphodiesterase catalyzes the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. Here too, cGMP regulates catalytic activity by GAF-domain binding. Phytochromes are regulatory photoreceptors in plants and bacteria which exist in two thermally-stable states that are reversibly inter-convertible by light: the Pr state absorbs maximally in the red region of the spectrum, while the Pfr state absorbs maximally in the far-red region. This domain is also found in FhlA (formate hydrogen lyase transcriptional activator) and NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.	1.0949e-06
NZ_CP013909.1\|WP_068197161.1\|4514853_4515285_-\|response-regulator	gnl\|CDD\|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.16244e-26
NZ_CP013909.1\|WP_068197172.1\|4521947_4522508_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	4.45717e-21
NZ_CP013909.1\|WP_068197183.1\|4528266_4528656_-\|VRR-NUC-domain-containing-protein	gnl\|CDD\|214959	smart00990, VRR_NUC, This model contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI.	6.66863e-12
NZ_CP013909.1\|WP_068197170.1\|4518815_4519748_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|184875	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional.	7.60191e-29
NZ_CP013909.1\|WP_068197166.1\|4515306_4518573_-\|PAS-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.41859e-39
NZ_CP013909.1\|WP_082685207.1\|4531082_4531925_+\|LexA-family-transcriptional-regulator	gnl\|CDD\|119397	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response.	7.96276e-14
NZ_CP013909.1\|WP_082685209.1\|4534768_4536658_+\|hypothetical-protein	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	3.90543e-110

>NZ_CP013909.1|WP_082685314.1|4528662_4529349_-|hypothetical-protein
MGLGLTRAQALAAPKIFQLNHRIGQREVVKLLVLILRAFVDSLRVKEKPDAADLITLADDLARTYTHDSVKDIILALKEARTGGHNFYQALDVSTLYKLIADYFEQKACFLENRHLDQKANGASTQAADVKLLGDAAPRMLEHVAQQIPADHPNAEGLRQKLTITNQKARRGLITPEQAAQQRAEARAATQRKARPDWKASPEAQQQIDKRHRQENRKIMERYRSPNL
>NZ_CP013909.1|WP_068197183.1|4528266_4528656_-|VRR-NUC-domain-containing-protein
MALAKKHDQLPLDLGQLYAADITGAILAFLTHYGYTVWRQNTTGIYDAAKARWRVNPQSRRGVPDIIGFRNRDGLFIGVEVKAGRDQLRDDQRTFLNELRAAGGLAFVAHDFAQFQQSFELRGLHCQVV
>NZ_CP013909.1|WP_068197181.1|4526950_4528231_-|sodium:proton-exchanger
MKKFALYVALAIAATLPGFYLRLTGTHVAPVLEAAIFFVAILGAGFLLSWGAEAAEEHVSQGLVIGVLALVTVLPEYAVDLYYTYQAGLHPGSAYAGFAAANMTGANRLLIGAGWPLIVFLYWWHSGKRAVALSWDNAAEIAYLALASLYSFVIVWKGSIGVIDFVVLVGIFAAYLWRLSKLPKADHDEAEEAEDDDDEVGPAAVLATLPVRQQWLMMGVLTVVAVAVIVMAAEPFAESLLAAGRDLGVNQFLLVQWVAPFASEVPEVVLVVLFVLNNRPTAALGALVSDKINQWTLLVGMIPVVYALGAGHLTGFPLDARQHEEFFLTAAQSLFAVALLLRLRLSLGSAAILLGLFSVQFALAWVFEHDEAGSVRLLTDMAWLYLVLALGLFWWNRAGLVQYVRVGLLARAEPSPVTDPAVATNP
>NZ_CP013909.1|WP_068197179.1|4526398_4526638_-|hypothetical-protein
MPLAPPQLYFENAVGRLYGHPDGYAIIQFNAGQRKFSELQRLYTQLRWLLELHRWHRFLNDQRLLDPYNPEEAAWIVNH
>NZ_CP013909.1|WP_068197175.1|4522863_4526211_+|class-I-SAM-dependent-DNA-methyltransferase
MLYTDFETRWLKSGGAERANYGLFLQDFCDLLGVPRPDPTTDNPAQDAYVLERAVTFDDGGGKQTTGRIDLYKRGCFVLETKQGTTSPDEQAAAEKAQLGLPAEKRRKGHAVRGTAKWEQMMRAAQEQALRYVRALPASEPRPPFVVVVDVGHCFDVYSNFAGVGDSYVPFPDSGTYRFYLPVLAKPELRAQLQQLFTDPQSLDPGRRAAQVTRQLAGHLAGLSSQLEKAGHASEVVAQFLMRCLFTMFAEDVELIPKESFSGLLTAYAGTEEARGYLPEALQGLWAVMDKGGFSPELRTRLRRFNGQLFHGATALPLNADQITLLQRAAAANWTEVEPAIFGTLLERALDPTERHSLGAHYTPRRYVERLVLPTVIEPLRREWAAAQAASATRLDEGKGKKAVTDAREELLKFLRRLTAVKVLDPACGSGNFLYVTLEHLKRLEGEVLTSLAKLGGSGRLELGDGTTVSPRQLLGLELNPRAAAIADVVLRIGYLQWHLRTHGLTELREPLLDDYQNIRQQDAVLGHNEDYSQTWPAEWPAADFIVGNPPFVGDKAMRRALGDGYVDALRKTYKGKVDESADLVMYWWERAAEITRQGHAEAFGFITTNSITQTFNRRLIQRHLAAEPPLSLTFAIPDHPWVDSTDGAAVRIAMGVGRAGTYSGKVATVVRETAAGDDDAPTVELVEADGVINSDFTTGADVAGAQALKANEGISSNGMMLAGSGFIVTEAQAHALGLGTVAGLETRIRPYRNGKDLTARPRGVYLVDLFGLTEAEAIREYPAVYQHLYTHVKPERDNNNRKKLKEIWWQFGETRKGLRLALKGLPRYIATPETAKHRIFQFLESGIAPDHKLVNIASGDAYNLGILSSRIHTSWAMASGSWLGVGNDSVYTSSRCFQTFPFPIATESQQARIREPAEDLDAHRKRQQAQHPGLALTDLYNVVEKLRAGQPLTAKEQTTHEQGLAAVVLSLHQQLDAAVAEAYGWPATLPDAEILTRLVQLNQQRAAEEAAGTVRYLRPEYQAPGQQQGTMALATTVAAVSDVATAEAQPWPAELAQQMQALRAVVQGAAVPLTAKQAAARFRGTKAAKVQPLLDTLVSLALLRHVPELDAYAT
>NZ_CP013909.1|WP_068197172.1|4521947_4522508_+|RNA-polymerase-sigma-factor
MNATPVLPTAADEAALVQRLLARDEQALRLVQERYARSLQLAIQRLVRDEVLAQDVLQEGLLKIWLSIASYDPERGRFFTWMVRVCCNHAIDVLRSPRQRFHQGNKSLEVSAAQQASSPASFNPEHIGVRELTLELKPKQREVVELLCFGGCTQVEAAEQLGVPLATVKTRARAALVALARVARVI
>NZ_CP013909.1|WP_068198931.1|4520057_4521644_+|c-type-cytochrome
MPTLGLSALTVLTLAMCQSNSTKTTEGTAQTPADSTGTAPAVAGSTGNAEAGRDVFRNETFGTEGFWTNAVRMPQGMKAAKLTVMDALKAGVSFDVDAMPADVKAAFASELKTDHSPAKAPKLNDPATMDALVKANAVIGMVPKGALVGVSCALCHAVTDKSMFDLGGKGSIGKRIDGPTPHQLNVGKLLATAANSRALFTTLQLRQPDGSTIGRAPKGLTATSTEAEVDAYLSNPKFYPIGTFDDSPDGNGNPVHIAPFFRQDLAAPFGSSGQNDKLDDFNNTVYTALFDQSNLLSPGGKQFIHVLGGAGGDAMLADYAKVLAATGVTGFPYVTASTAGKPGDAPTPTGKRVDEQKLRDLNAYVSALAAPKGVVTDAALVSQGRALFASNNCTNCHNTDQSKPVMTKLIPMNQIYPDYKPKVLAQRQAPLSPIQNAPGTFDDKMIVVDASPGGGIRGNALPLLLDLARKPVFLHDNSVPSLEALLNPNRGKGAPHPFYAVSAQERTALVAYLKSLDTGPDKGVAMRR
>NZ_CP013909.1|WP_068197170.1|4518815_4519748_+|alpha/beta-fold-hydrolase
MDLHFVRRGTGRPLLLVHGIGGSWRSWNTIIDALAAERDVIAVDLPGHGETPQLEGENSIATLADAVTGFLTQHDLLGIDAVGSSMGARLVLELARRGGVLGAVVSLDPGGFWQGWQIPFFYHSVDVSVKLVKALQPVMPALAGSAVGRTVLLPQFSARPWAVDAQQAIDEMYTFAHSPAFDELLDQLAHGEVQKPAPQGSIPGPLIIGWGRQDRVCLPSQSKLALEKFPDARLYWFEHCGHFPQWDQPAEATRLILAVTSRQPFTDESIALSKSEEAAPALPKAAVVGAALALLAGGIWLLSSRRKRGR
>NZ_CP013909.1|WP_068197166.1|4515306_4518573_-|PAS-domain-containing-protein
MSPAPLDLLPVFNAQPGATLLLSPQWIIVGASDDYLVATLTERATLVGQYLFDAFPDNPNTPEANGVANVRASLLQVLATCQPHEMAPQHYDVPDPARPGRFVERHWLPRHTPVLDAAGQVQFILQSVQDVTASRRAEQQLHESQAAEQAARAEAEAQRQRFHEVLMQLPAYVAVYHGPDHHYQFVNPPYQGLFPGRSFAGRPFREGMPEAIGLGVVALFDRVYQTGEPYFAREMEGWFDFQGNGQPEQVFLNLYLHPLRNPQGAIDGVLDFSYGVTEQVRARQQLELLNQELETRVAARTQEAEAARAEAEEQRNRLLRLFNQAPAFINIFTGPEHVLTLVHPSTYELLQNRPLLGLPRRQALPELPEEQHAPFDEVYRTGQPRYVHERLSRLDLRNDGVLHDVYFDLTFQPLFDAAGHIEGVMSFAVNVTERVRIRQQAEALQEQVLAAAEAQARQRETFYQILADTPAAVGILRGPEHRYEYVNTALQQLFPDRQLTGRPVAEAQPETVATGFLTLLDGVYRTGDTYHGQEMLLPVEQPDGQPARDVYFTFTYQAYREDGRIAGVSIFANDVTAQVRARREREAQRQRLHDLFMQAPAAISILAGPELVFELVNPGFHAMFGGRDLLGKPLLAALPELAPHQAYRTIRRVLDTGETNEELGILVPVARPEDGVLEDRYFNYIQQARRDEHGRVDGVLVFAFEVTEQVQARQASEASARQLQLLTDALPVLISYIDRHQTYRFANQAYHGWFGLTPAEVVGRHPREVAGAAAYEQVRPNIERALAGERVEYEARMAYRPDFIRHVHAIFIPDGPAGAVAGFYTLVSDITEQVEARQAVERSARQAQAAAQELAAANQQLTRTNVDLDNFIYTASHDLKAPITNIEGLLDTLRHELPEPAPTGEVAHILNLMQGAVDRFKRTIDHLTEVSKLQKEHDPPTAQVALAPVLDDVRLDLAPLLRQTGGQLQVDVQHCPPLRFSEKNLRSVVFNLLSNALKYRHPERAPLVQVRTRLEEAFVVLEVEDNGLGLDLAREEQVFAMFQRLHTHVEGSGLGLYMVKRMVENAGGQITVHSRVGEGTAFAVWFPR
>NZ_CP013909.1|WP_068197161.1|4514853_4515285_-|response-regulator
MSPTPIRCTLLVDDDPATNYLNRKLLQRLAVTGQVREALNGQEALHVLATSCTDPVAPACPDLIFLDVNMPVLNGFDFLAAYQQLPLARQQAIVIIMLTTSLHPADVARADALPVAGFLTKPLTAEKIAQVVQEHFGRANQER
>NZ_CP013909.1|WP_068197194.1|4530426_4530720_-|hypothetical-protein
MQPAVILSAADWQELTERLARLEAAEQARALATTAKPDEVLSTKAAAEYIGLCAEALLRARRAGRIAGVRLNEKDWGFRRSVLDAYPRRYHRAAQAA
>NZ_CP013909.1|WP_157781172.1|4530722_4530983_-|hypothetical-protein
MEHNTSAPPTLRDIYDRLGPRNQSVKDVLKLLTDRGIKASRAGIYQTIHGRSQRREVVEAFLEVAEAEFTRRRQAEERTRQLAASE
>NZ_CP013909.1|WP_082685207.1|4531082_4531925_+|LexA-family-transcriptional-regulator
MEQANAASSRIEAWLNHKGLNANSASQKLGYANSSKMYKILQGTSPGFETLVEFLKVWPDLSPDWLLLGNGPMTRGEATDAPNRSLALQQVVRGDKVVVVTVDDKGIENTVLVPIPAQAGYSLAHNEAVYMQQFGTYKIPGFERGEFRAFEVAGDSMAPTINHRDVVVATRVEELRLLEPGEVYVVVTPESVMLKRIKNRLRANDQEVMLYSDNPHRLPFGMETRDVQELWRVRGYVSSYIPSAPDITVERLWEVIEQLGFDRGEVRRHLIENAPSDAPQ
>NZ_CP013909.1|WP_157781173.1|4532393_4532792_+|hypothetical-protein
MALHTLYDAPTLTISYDYANDWLYLDWHGALDDESVMTGALKLLELLKQQNCSKVLNDNTRITGLWADAAKWGSDVFFPMLYEAGCRYFSWVYSPERYSQLSAQLAVQHTTAGITIMTFQSLDTATEWLQRM
>NZ_CP013909.1|WP_082685208.1|4532828_4534142_+|PAS-domain-containing-protein
MTPLLSAPGTFYALWQLPEHYLLMAPDYTILDASDPYLAVTFKQRDVIVGRNVFDVFPRADQNDWKVFSDSLEHVRQHGTPHTMPRIRYDMQRTAEQGGGLEERYWETTNYPQLDAQGNVQAILLKTTDVTEQHLVEQQAQAMQRDLLESQERSKFILEALPVMVWTTRPDGSSDYFNQRWLTFTGRTMAQEVEFGWLEGVHPDDRDAANTAWRLAYESGEAYQTEYRLRCADGDYRWVLARGIPRRDAQGQVSMWVGCSVDIHDQKALVVELLQANEEQAALSDQAYQAFQLAQSQRETFYNLFQQAPALVAIVRGPQYVFEFANPRYHELFATDDITGHAVLDIVPEAAEQGFIALLDHVYQTGEPFYGKEMRLQLHRRASGQIESRYFDFVYQAFRENGAIVGIFSFAFDVTELVEARQQLRAFAASPQSPSAS
>NZ_CP013909.1|WP_068197207.1|4534183_4534555_+|hypothetical-protein
MDVNTLDFQQARIKQILFKSQLRSVLYGVREADEALFAPQGNALGQWLSSVIKPKFPLRPEVREAERLLHDMLGTGRELAAQYRRGQIDEARRGLTRIDRIGEQLVSVLHKLGQEAGRFGAAA
>NZ_CP013909.1|WP_082685209.1|4534768_4536658_+|hypothetical-protein
MGPRLREQLGQVEPLAIPWFSRVPELYMGIITLLGMLLVVAGCSGPPQQPGLPAPAPDTTLPYARRRIVLPNVPERGRVLDRHDSVLVATRPQYLLQLPRRPPLDTLALGQLLGWGPATIRRRIAEALPYEEAPAGYPVQLRLTAKEAERVRRQRREWPQLALTEQRRRAYTTAAGAAVLGYLGSEAQPFFRQAQRYRRGRFYRLRNGGVETYYNGLLGGHRGYRHPLVDSTGQERGTWAPDTAFQQGQDLHLTLDVKLQAYAEQLLGRRKGYLVALDPRTGEILAYVSGPTYKPAALTAPDQAGVRAKLLEHEDMPLLNRPATQARPPGSVFKLVNAAIALQLGAITPATAFRCDQSLVSCVHRHPPGKNLTLGLMYSCNPYFYQVFRRLIGRVPDSLTQDSAAARHANLAQWRRYARSFGLDSVLGVDLPREAPGFLPTPAYYDTARRTTRWTYRSIYSLSIGQGEINLTGLQMANLAAIIANRGWYYPPHLVRSVGDTGPLARFREKHHTLVDSAHIAALVPGMVAVLQRGGTADASSLADVGITVAGKTGTVENDEGDDHAAFVGFAPAEAPQIAVAVYLENAGFGATAAAPCAALVMEQYLRGRIAPRRKKWEARIQHRARHGY
>NZ_CP013909.1|WP_068197213.1|4536829_4537558_-|GAF-domain-containing-protein
MATPHHLLASNEAQRLAALQAYRVAGDAPFFDEFVRLTGKLFQVPIALVSLVEADTVWFRGNSGLPEAPERVPRGESLCSVAILSEEATVFDNLADRPCTLIDPTAVGDLGLRFYAGSPLHTATGEAVGTLCVIDRKPRLLAPEEAVLLRELADVALRLFDLQVALAAASAPAPALWADVYTAIGTSISRLDTLAELMQWEDAPDTPAALSYQASRREEAAVVAKILQQQINTAIQQLERQP
>NZ_CP013909.1|WP_068198937.1|4537947_4538508_+|GAF-domain-containing-protein
MTDTPHEAARLAALKRYDILDSPQDGSLNRLTALAAKMFNMPIAIISMVDEDRIWFKSLHGLDAEQIDRGGGLCDSAILSEDVYIVEDARQDPRTLTNPLVVGEMGLRFYAASPLTTHDGHNLGTFCLIDQKPRYLNQAQQLMLQDLAGIAMDEIELRLAARSAVAASTRRVAELEQELEQARKQA
>NZ_CP013909.1|WP_068197218.1|4538563_4539004_-|hypothetical-protein
MRHRLRYMQPTATPKLYFENSVGRLLEHPEGFVIFQYRPGKRQLSDLQALLTHTRNLLVRNDWHRMLGDQRQMAPFTEEESAWIVDYWLDASRQRPGGLRGAILLADDAFARLSMDQVMHEAKASVLSYRFFDAEDKAVAWLREVA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3654959 : 3714013

uncultured_virus(13.33%)

tail,head,capsid,terminase,portal,tRNA,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068195368.1\|3654959_3655556_-\|tRNA	tRNA-(ms[2]io[6]A)-hydroxylase	NA	NA	NA	NA
WP_068195371.1\|3655566_3657573_-	hypothetical protein	NA	NA	NA	NA
WP_068195373.1\|3657656_3658745_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_068195376.1\|3658862_3659543_+	DUF4918 family protein	NA	NA	NA	NA
WP_068195379.1\|3659680_3660808_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_068195381.1\|3660797_3661559_+	hypothetical protein	NA	NA	NA	NA
WP_068195384.1\|3661650_3663234_+	hypothetical protein	NA	NA	NA	NA
WP_099092946.1\|3663339_3664605_+	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	2.7e-40	40.6
WP_068195386.1\|3664786_3666223_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_068195389.1\|3666464_3667757_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_071885934.1\|3667797_3668277_+	LptE family protein	NA	NA	NA	NA
WP_157781104.1\|3668469_3669909_+	hypothetical protein	NA	NA	NA	NA
WP_068195397.1\|3669936_3670368_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_068195400.1\|3670639_3670930_+	co-chaperone GroES	A0A221S4G8	uncultured_virus	1.8e-16	52.1
WP_068195403.1\|3670994_3672644_+	chaperonin GroEL	A0A240F779	uncultured_virus	1.8e-193	66.9
WP_068195408.1\|3672960_3674532_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.3e-62	31.8
WP_068195410.1\|3674616_3675576_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_068195413.1\|3675806_3677441_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	3.1e-166	57.0
WP_068195416.1\|3677550_3678645_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_068198723.1\|3678778_3679477_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_082685118.1\|3679556_3681038_-	hypothetical protein	NA	NA	NA	NA
WP_099092947.1\|3682254_3683508_+	two-component sensor histidine kinase	NA	NA	NA	NA
WP_068195423.1\|3683510_3683897_+	response regulator	NA	NA	NA	NA
WP_068198726.1\|3684045_3684708_+	DUF4159 domain-containing protein	NA	NA	NA	NA
WP_068195426.1\|3684714_3685269_-	hypothetical protein	NA	NA	NA	NA
WP_068195430.1\|3685307_3685880_-	glycerol acyltransferase	NA	NA	NA	NA
WP_068195434.1\|3685988_3686753_-	patatin-like phospholipase family protein	A0A2H4UUE4	Bodo_saltans_virus	2.2e-13	28.7
WP_068195436.1\|3686863_3687712_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_068195438.1\|3687826_3688774_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_068195441.1\|3689289_3690039_-	hypothetical protein	A0A0E3D9T0	Bacillus_phage	1.1e-17	31.3
WP_157781105.1\|3690285_3690378_+	hypothetical protein	NA	NA	NA	NA
WP_157781106.1\|3690525_3691299_+	hypothetical protein	NA	NA	NA	NA
WP_068195447.1\|3691503_3691785_+	hypothetical protein	NA	NA	NA	NA
WP_068195450.1\|3691781_3693224_+	hypothetical protein	NA	NA	NA	NA
WP_157781107.1\|3693355_3694492_+	hypothetical protein	NA	NA	NA	NA
WP_082685119.1\|3694492_3694642_+	hypothetical protein	NA	NA	NA	NA
WP_068195456.1\|3695237_3695588_+	hypothetical protein	NA	NA	NA	NA
WP_157781108.1\|3696033_3697089_+	hypothetical protein	NA	NA	NA	NA
WP_157781109.1\|3697107_3697284_+	hypothetical protein	NA	NA	NA	NA
WP_157781110.1\|3698103_3698316_+	hypothetical protein	NA	NA	NA	NA
WP_068195465.1\|3698369_3698750_+	hypothetical protein	NA	NA	NA	NA
WP_157781111.1\|3698806_3699451_+	hypothetical protein	A0A2D1GFY7	Gordonia_phage	3.6e-09	28.2
WP_157781112.1\|3699933_3701385_+	hypothetical protein	NA	NA	NA	NA
WP_068195473.1\|3701634_3702255_+	hypothetical protein	NA	NA	NA	NA
WP_068195476.1\|3702273_3702780_+	hypothetical protein	NA	NA	NA	NA
WP_157781113.1\|3702979_3704026_+	hypothetical protein	NA	NA	NA	NA
WP_068195481.1\|3704139_3704367_+	hypothetical protein	NA	NA	NA	NA
WP_157781114.1\|3704433_3704949_-	hypothetical protein	NA	NA	NA	NA
WP_157781115.1\|3705012_3705498_-	hypothetical protein	NA	NA	NA	NA
WP_068195493.1\|3705870_3706365_+	hypothetical protein	A0A0R6PH16	Moraxella_phage	3.0e-16	35.3
WP_068195496.1\|3706364_3707816_+\|terminase	phage terminase large subunit	W8CPK4	Croceibacter_phage	8.7e-88	40.5
WP_068195499.1\|3707893_3708346_+	hypothetical protein	NA	NA	NA	NA
WP_068195502.1\|3708471_3709776_+\|portal	phage portal protein	A0A097EYL6	Mycobacterium_phage	3.2e-12	25.8
WP_068195505.1\|3709792_3710554_+	hypothetical protein	I6R1H0	Marinomonas_phage	1.7e-18	37.4
WP_068195508.1\|3710658_3711387_+\|head,protease	HK97 family phage prohead protease	W8EBB3	Geobacillus_phage	9.3e-30	42.0
WP_068195512.1\|3711399_3712542_+\|capsid	phage major capsid protein	Q9XJT3	Pseudomonas_phage	1.9e-37	31.6
WP_068195515.1\|3712552_3712768_+	hypothetical protein	NA	NA	NA	NA
WP_068195518.1\|3712846_3713350_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_068195524.1\|3713352_3713679_+\|head	phage head closure protein	NA	NA	NA	NA
WP_068195527.1\|3713668_3714013_+	HK97 gp10 family phage protein	S0A2I3	Cellulophaga_phage	4.4e-06	29.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013909

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection