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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LN854573 Pseudomonas sp. URMO17WK12:I11 isolate Shine chromosome 1 7 crisprs DEDDh,RT,cas3,csa3,DinG 1 1 6 0

Results visualization

1. NZ_LN854573
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN854573_1 588031-588096 Orphan NA
1 spacers
RT

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN854573_2 588454-588548 Orphan NA
1 spacers
RT

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN854573_3 1814149-1814246 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN854573_4 2772321-2772431 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN854573_5 3651680-3651790 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN854573_6 3981279-3981389 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN854573_7 4934877-4934987 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_LN854573.1 5681166-5681184 1 0.947
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_LN854573.1 37869-37887 2 0.895
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_LN854573.1 3450363-3450381 2 0.895
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_LN854573.1 5036533-5036551 2 0.895
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_LN854573.1 5727574-5727592 2 0.895

1. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to position: 5681166-5681184, mismatch: 1, identity: 0.947

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggtaatggcggc	Protospacer
*********.*********

2. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to position: 37869-37887, mismatch: 2, identity: 0.895

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcaatgtaggc	Protospacer
**************  ***

3. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to position: 3450363-3450381, mismatch: 2, identity: 0.895

tggcggcggcaatggcggc	CRISPR spacer
tggcgggagcaatggcggc	Protospacer
****** .***********

4. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to position: 5036533-5036551, mismatch: 2, identity: 0.895

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcagtggctgc	Protospacer
***********.**** **

5. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to position: 5727574-5727592, mismatch: 2, identity: 0.895

tggcggcggcaatggcggc	CRISPR spacer
tgccggcggcgatggcggc	Protospacer
** *******.********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_CP011515 Mitsuaria sp. 7 plasmid, complete sequence 56546-56564 0 1.0
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_CP013110 Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence 2016048-2016066 0 1.0
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_CP029452 Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence 484850-484868 0 1.0
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_CP029452 Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence 1621156-1621174 0 1.0
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_CP029830 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence 356654-356672 0 1.0
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NC_017966 Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence 681931-681949 0 1.0
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NC_017966 Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence 685369-685387 0 1.0
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_CP024310 Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence 390715-390733 0 1.0
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_CP005085 Sphingobium sp. TKS plasmid pTK1, complete sequence 291219-291237 0 1.0
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_CP005085 Sphingobium sp. TKS plasmid pTK1, complete sequence 303732-303750 0 1.0
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_CP005085 Sphingobium sp. TKS plasmid pTK1, complete sequence 305400-305418 0 1.0
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_AP022319 Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence 445371-445389 0 1.0
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_CP013054 Sinorhizobium americanum CCGM7 plasmid C, complete sequence 451433-451451 0 1.0
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_CP023071 Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence 382494-382512 0 1.0
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_CP016453 Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence 372119-372137 0 1.0
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_CP025547 Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence 300191-300209 0 1.0
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_CP017244 Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence 1145454-1145472 0 1.0
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_CP049249 Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence 1016815-1016833 0 1.0
NZ_LN854573_1 1.1|588054|19|NZ_LN854573|CRISPRCasFinder 588054-588072 19 NZ_CP049249 Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence 1017175-1017193 0 1.0

1. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 0, identity: 1.0

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcaatggcggc	Protospacer
*******************

2. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 0, identity: 1.0

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcaatggcggc	Protospacer
*******************

3. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 0, identity: 1.0

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcaatggcggc	Protospacer
*******************

4. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 0, identity: 1.0

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcaatggcggc	Protospacer
*******************

5. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcaatggcggc	Protospacer
*******************

6. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to NC_017966 (Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence) position: , mismatch: 0, identity: 1.0

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcaatggcggc	Protospacer
*******************

7. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to NC_017966 (Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence) position: , mismatch: 0, identity: 1.0

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcaatggcggc	Protospacer
*******************

8. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 0, identity: 1.0

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcaatggcggc	Protospacer
*******************

9. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to NZ_CP005085 (Sphingobium sp. TKS plasmid pTK1, complete sequence) position: , mismatch: 0, identity: 1.0

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcaatggcggc	Protospacer
*******************

10. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to NZ_CP005085 (Sphingobium sp. TKS plasmid pTK1, complete sequence) position: , mismatch: 0, identity: 1.0

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcaatggcggc	Protospacer
*******************

11. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to NZ_CP005085 (Sphingobium sp. TKS plasmid pTK1, complete sequence) position: , mismatch: 0, identity: 1.0

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcaatggcggc	Protospacer
*******************

12. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 0, identity: 1.0

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcaatggcggc	Protospacer
*******************

13. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 0, identity: 1.0

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcaatggcggc	Protospacer
*******************

14. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 0, identity: 1.0

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcaatggcggc	Protospacer
*******************

15. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 0, identity: 1.0

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcaatggcggc	Protospacer
*******************

16. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to NZ_CP025547 (Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcaatggcggc	Protospacer
*******************

17. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 0, identity: 1.0

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcaatggcggc	Protospacer
*******************

18. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 0, identity: 1.0

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcaatggcggc	Protospacer
*******************

19. spacer 1.1|588054|19|NZ_LN854573|CRISPRCasFinder matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 0, identity: 1.0

tggcggcggcaatggcggc	CRISPR spacer
tggcggcggcaatggcggc	Protospacer
*******************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 762708 : 859655 97 uncultured_Caudovirales_phage(66.67%) integrase,terminase,holin,lysis,capsid,protease,tail,head,plate,portal,tRNA attL 844004:844019|attR 860134:860149
DBSCAN-SWA_2 1661005 : 1669684 8 Pseudomonas_phage(57.14%) holin NA
DBSCAN-SWA_3 3483866 : 3515510 28 Burkholderia_phage(40.0%) holin,protease NA
DBSCAN-SWA_4 4769030 : 4776177 8 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_5 5387702 : 5393958 8 uncultured_Caudovirales_phage(83.33%) tRNA NA
DBSCAN-SWA_6 6019180 : 6024599 7 uncultured_Caudovirales_phage(50.0%) lysis,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage