CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_LN997842	Streptomyces reticuli genome assembly TUE45, chromosome : I	18 crisprs	csa3,WYL,casR,DEDDh,cas4,Cas9_archaeal,cas3,DinG	1	3	6
NZ_LN997844	Streptomyces reticuli genome assembly TUE45, plasmid : III	0 crisprs	NA	0	0	0
NZ_LN997845	Streptomyces reticuli genome assembly TUE45, plasmid : IV	0 crisprs	NA	0	0	0
NZ_LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	1 crisprs	NA	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LN997842_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN997842_1

392970-393203

Orphan

Consensus_repeat	Method
GTGGGCGGAGGTTGGCCGGGCGGC	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_LN997842_1

>merge|NZ_LN997842|1|392970-393203|CRISPRCasFinder
GTGTGGGGACGTCGACCAGGCGACGGATCGGAGTCGGATCGGGTACGCGGACGTCGACGGGGTGACGGGGCGGAGTCGGGCCGGGTGGGCGGAGGTTGGCCGGGTGGCGAGGCGGAGTCGGGTCGGGTGGGCGGAGGTTGGCCGGGCGGCAGGCCCGTGTCGGGTTCGGTCGACGGAGGTTGACCGGGTGGCGAGGTCGCGTCGGGTTGCGTGGGCGGAGGTTGGCCGGGCGGC

>NZ_LN997842|1|1|392970-393203|CRISPRCasFinder
GTGTGGGGACGTCGACCAGGCGAC	GGATCGGAGTCGGATCGGGTACGCGGACGTCGACGGGGTGA
CGGGGCGGAGTCGGGCCGGGTGGG	CGGAGGTTGGCCGGGTGGCGAGGCGGAGTCGGGTCGG
GTGGGCGGAGGTTGGCCGGGCGGC	AGGCCCGTGTCGGGTTCG
GTCGACGGAGGTTGACCGGGTGGC	GAGGTCGCGTCGGGTTGC
GTGGGCGGAGGTTGGCCGGGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN997842.1\|WP_059246776.1\|394645_396412_+\|NADH-dehydrogenase	unknown	unknown	gnl\|CDD\|223724
NZ_LN997842.1\|WP_059246768.1\|389783_390029_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059246779.1\|399787_400633_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059246780.1\|400657_402283_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|238625
NZ_LN997842.1\|WP_059246771.1\|392169_392364_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059246767.1\|388722_389748_+\|DNA-topoisomerase-IB	unknown	unknown	gnl\|CDD\|226099
NZ_LN997842.1\|WP_059246769.1\|390047_391280_-\|glycosyl-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|185693
NZ_LN997842.1\|WP_059246773.1\|393257_393518_+\|DUF4040-domain-containing-protein	unknown	unknown	gnl\|CDD\|379087
NZ_LN997842.1\|WP_059246772.1\|392360_392813_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237148
NZ_LN997842.1\|WP_059246774.1\|393514_394264_+\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|237140
NZ_LN997842.1\|WP_059246764.1\|385961_386618_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NZ_LN997842.1\|WP_059246770.1\|391380_391950_-\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
NZ_LN997842.1\|WP_059246775.1\|394298_394646_+\|dehydrogenase	unknown	unknown	gnl\|CDD\|223938
NZ_LN997842.1\|WP_079080800.1\|397204_397585_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|273042
NZ_LN997842.1\|WP_059246778.1\|397719_398670_-\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176191
NZ_LN997842.1\|WP_059246766.1\|387890_388694_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|237187
NZ_LN997842.1\|WP_059246763.1\|384572_385604_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187551
NZ_LN997842.1\|WP_059254694.1\|398756_399710_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|181818
NZ_LN997842.1\|WP_059254693.1\|396412_397027_-\|DUF4230-domain-containing-protein	unknown	unknown	gnl\|CDD\|379417
NZ_LN997842.1\|WP_059246765.1\|386647_387715_-\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236135

Protein	Function_ID	Function_description	E-value
NZ_LN997842.1\|WP_059246780.1\|400657_402283_-\|amidohydrolase	gnl\|CDD\|238625	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.	2.94865e-155
NZ_LN997842.1\|WP_059254694.1\|398756_399710_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|181818	PRK09393, ftrA, transcriptional activator FtrA; Provisional.	1.55426e-109
NZ_LN997842.1\|WP_059246765.1\|386647_387715_-\|PHP-domain-containing-protein	gnl\|CDD\|236135	PRK07945, PRK07945, PHP domain-containing protein.	0
NZ_LN997842.1\|WP_059246767.1\|388722_389748_+\|DNA-topoisomerase-IB	gnl\|CDD\|226099	COG3569, COG3569, Topoisomerase IB [DNA replication, recombination, and repair].	1.02616e-59
NZ_LN997842.1\|WP_059246774.1\|393514_394264_+\|sodium:proton-antiporter	gnl\|CDD\|237140	PRK12567, PRK12567, putative monovalent cation/H+ antiporter subunit B; Reviewed.	3.18996e-32
NZ_LN997842.1\|WP_059246773.1\|393257_393518_+\|DUF4040-domain-containing-protein	gnl\|CDD\|379087	pfam13244, DUF4040, Domain of unknown function (DUF4040).	2.99977e-09
NZ_LN997842.1\|WP_059246772.1\|392360_392813_+\|hypothetical-protein	gnl\|CDD\|237148	PRK12599, PRK12599, putative monovalent cation/H+ antiporter subunit F; Reviewed.	1.38988e-07
NZ_LN997842.1\|WP_059246769.1\|390047_391280_-\|glycosyl-hydrolase-family-protein	gnl\|CDD\|185693	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.	1.93803e-97
NZ_LN997842.1\|WP_059246770.1\|391380_391950_-\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	8.00107e-27
NZ_LN997842.1\|WP_059246775.1\|394298_394646_+\|dehydrogenase	gnl\|CDD\|223938	COG1006, MnhC, Multisubunit Na+/H+ antiporter, MnhC subunit [Inorganic ion transport and metabolism].	8.20128e-22
NZ_LN997842.1\|WP_079080800.1\|397204_397585_-\|STAS-domain-containing-protein	gnl\|CDD\|273042	TIGR00377, Anti-sigma_F_factor_antagonist, anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins. [Regulatory functions, Protein interactions].	5.09482e-27
NZ_LN997842.1\|WP_059246778.1\|397719_398670_-\|NADP-dependent-oxidoreductase	gnl\|CDD\|176191	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	3.54724e-125
NZ_LN997842.1\|WP_059246764.1\|385961_386618_-\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	6.55082e-39
NZ_LN997842.1\|WP_059246766.1\|387890_388694_+\|SDR-family-oxidoreductase	gnl\|CDD\|237187	PRK12743, PRK12743, SDR family oxidoreductase.	1.18355e-148
NZ_LN997842.1\|WP_059246763.1\|384572_385604_-\|SDR-family-oxidoreductase	gnl\|CDD\|187551	cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs. Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.06986e-93
NZ_LN997842.1\|WP_059254693.1\|396412_397027_-\|DUF4230-domain-containing-protein	gnl\|CDD\|379417	pfam14014, DUF4230, Protein of unknown function (DUF4230). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 203 and 228 amino acids in length.	9.66988e-42
NZ_LN997842.1\|WP_059246776.1\|394645_396412_+\|NADH-dehydrogenase	gnl\|CDD\|223724	COG0651, HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion / Inorganic ion transport and metabolism].	1.12418e-71

>NZ_LN997842.1|WP_059246772.1|392360_392813_+|hypothetical-protein
MNGWILAATVVLGGGGVAALWGVATGPPARRVIAQNLTTSVVCPALLLLAQGYGRPSYVDLALLLALLGPVGTLVFARLLCEDLAGDRASAWGPTWTAAGLGAAVVIALCVAAGPTRATAKLLLIGALLITGNVIASRALAGGFRGVRGG
>NZ_LN997842.1|WP_059246771.1|392169_392364_+|hypothetical-protein
MTRRTAPRAVLLATGELLAWWAALALLWLVLISTVDALERIVGASCAALGAVLARAGRRAVTWR
>NZ_LN997842.1|WP_059246770.1|391380_391950_-|VanZ-family-protein
MEDRMARTVPRLPELLRTARRRRPAEEVRPRAARHALPLPVRLLAMLAAFAAMVAFAVVLARITLQPSPASVPLTHSNLHPGRSLRAYAEQASLGDAVRQLGGNLLLGVPFGVLVPVLAPRSRGVLRVTALTALVMLMVELVQGALVTGRAFDIDDVLLNTAGALLGWLLLGRRLGRGVHRRVREPSDG
>NZ_LN997842.1|WP_059246769.1|390047_391280_-|glycosyl-hydrolase-family-protein
MASPRLLRRCLLAALSAALVGSVAVGPAQAGTAAPAAAAVTTFSDTFDGPAGAAVDSSKWTLETGDNVNNHERQYYTSGTKNAALDGQGHLVITARKENPAGYQCWYGSCQYTSARLNTAGKFTAQYGHVEARMKIPRGQGMWPAFWMLGTPVNWPDSGEIDVMENVGFEPSTVHGTIHGPGYSGSGGIGAGYTLPNGQAFADAFHTFAVDWAPDSITWSVDGNVYQRRTPADLGGKTWVFNKPFFLILNLAVGGYWPGDPDGSTQFPQQLVVDSVSVTTSDSAAGVPIRGLAGKCVDVAGASSANGTPVQLYDCNGTGAQAWTVGSDGTLRALGKCLDVTGNGTADGSTVQLWDCTGGPNQKWTVTGAHDIVNPQANKCLDVTGNNSANGTRLQIWTCTGGANQKWTVG
>NZ_LN997842.1|WP_059246768.1|389783_390029_+|hypothetical-protein
MTEQAAPHISHPRILVLGVCQGRHGEPPFRIMEIDGQVVGEARTVTDVLETAAAYGIPIHDLDDPDVVRFVGGDKYTWTLH
>NZ_LN997842.1|WP_059246767.1|388722_389748_+|DNA-topoisomerase-IB
MRLRTSSCDDPGYRRHRCGRGFRYTDVDGRPLTDPGQLARIRALTIPPAWRDVWICPWPGGHLQAVGTDDAGRRQYLYHEQFRAEQEKAKHEHVRQVARALPELRAQVALDLAGRGLSRPRVTACAVRLLDLGFFRIGSDRHTRTSETYGLTTMLREHVSCGRGEITFSYPAKGGTETVRALVDEQAHAVARALLRRPRGGDRFLVFRERGSWQDLHGDDLNEALRRLSGTDVTAKDFRTWHATVLAAVAVAVVPRDARATEAARRRQIARAVREVSHYLGNTPAVCRSSYIDPAVFELFERGVTVAPVLTRLGEHGSFGRPATQGAVEAAVLDLLDGAAG
>NZ_LN997842.1|WP_059246766.1|387890_388694_+|SDR-family-oxidoreductase
MSTPAPQRTALITGADSGIGRATAVRLAEAGLDIGITWHTDEKGAEETADEVRRAGRRAAVARLDLTRLPEAADTVDELCAELGRIDVLVNNAGTGTMTPYLDLTLPEVRRVLDVDLVGPFLLGQRAARRMIRQGDGGRIVNVTSVHEHQPRVGAAPYCAAKGGLGLLTQVMALELAEYGITVNAVAPGEIATPMTGQEDTDVHTERRPGVPLGRPGDAREVAAVIAFLASPDASYVTGASWSVDGGMLRMGPQAGSHLTSDDWRRP
>NZ_LN997842.1|WP_059246765.1|386647_387715_-|PHP-domain-containing-protein
MEPVAALDRIAFLLERALAPTYRVRAFRTAARTLAALPADDVAERAAAGTLESLKGVGPKTAQVVREALAGEVPGYLRRLEAEAGAPAGPETAGAGLRALIRGDCHTHSDWSDGGSPIEEMGRAAAELGHEWTALTDHSPRLTVARGLSPARLREQLAVVAELNARWAPFRLLTGIECDILEDGSLDQEPELLERLDVVVVSVHSKLRMDARSMTRRMVAAVRDPHADVLGHCTGRLVTGRGRPESQFDADEVFAACAESGTAVEINSRPERLDPPRRLLRRAVEAGVLFSVDTDAHAPGQLDWQILGCARAEECGVPPERVVTTWSAEELLDWTREGRLPARVAGSGRGTRAGS
>NZ_LN997842.1|WP_059246764.1|385961_386618_-|HAD-family-hydrolase
MERAAVFDVDGTLVDTNHLHVVTWWEAFRQAGHDVPMHAVHRAVGLGSTDLIAHLLGDDRDREQDAALSAAHTALYGQYFDRLPALPGAGELLRRLHGDGWTVVLATSASGAELGALRRAIGADDAIAGTASAEDVREGKPAPEPVEHALELAGVPASRAVFVGDTVWDMRAGSKAGVRCVGLLCGGIPRADLAEAGAEAVYADPADLLARLAGSPLA
>NZ_LN997842.1|WP_059246763.1|384572_385604_-|SDR-family-oxidoreductase
MSSSAGSRVVVTGATGNVGTSVVRLLSEDPEVKSVRGLARRTPQWSPPKTEWAAVDLGSEQANLAERFEGADAVIHLAWAFQPTHDPATTWRTNVLGGIRVFEAVAAARVPVLVHASSVGAYSPGPKDRPVDESWPTHGWPDAAYCREKAYLERTLDVFERDHPEVRVVRMRPAFLFKWESASEQRRIFGGRFLPGPLARPELLPFLPDIPGLRVQALHTDDAAEAYRLAVHSDSARGAFNLAADPPLDAGVLAELLGSRPVRLPRAAVRSAIAAAWGLHLLPASPHLFDAVLRLPLMDCGRARAELGWEPRRTATEVIQEFLEGLQKGGGMETEPMRGRKVG
>NZ_LN997842.1|WP_059246773.1|393257_393518_+|DUF4040-domain-containing-protein
MSDAVIVVVLLLVAASATAAVAQRDPARQALVLSFLGVLLAVLFTVLQAPDVGLSQLAVGSALTPLLIMLSVRKVRRRGRSKEGPR
>NZ_LN997842.1|WP_059246774.1|393514_394264_+|sodium:proton-antiporter
MNRLRLFLLAVGGAGLAALLVAACLDLPDFGGRWHPYGERAVHASLARHTANTIASVNFDQRAYDTLGEMSILFAAVLGCVVLLRQARDEHRAQPEPAEVARPVRRYALLVLPVTLVTGLYVIAHGQLSPGGGFQGGVVAATALHLLYLGADYRALERVRPLGLYETTDSLAVCAYLVLGIAGVLAGTAFLANTLLPYGTFDTLSSGGTVPLLNAAVGMEVASAAVVLLAHFLDQAVEIEERTEEAHGS
>NZ_LN997842.1|WP_059246775.1|394298_394646_+|dehydrogenase
MHVLPYLVAAYVFLTGCYGLATSRNLIHAVGCLAVCQSATYILLLAVGYRDGATAPVFSDLEPGTRPVVDPVVQALTLTDIVVGATVTALLLALVLQIAKRHGTIDPDELRELRG
>NZ_LN997842.1|WP_059246776.1|394645_396412_+|NADH-dehydrogenase
MHHLIPLLVAVPLLGAALLVATGRLLPRIAAEITGFVVSGGTAALAVLLLLDSAPPMVEWVGGWLPVDGESVGILVVGDGPALGMAALASLLTLAALAYSWRYFDEPPSGRTGSFTALMLVFQGAMCGFAVAGDLFNAFVFFELMSVVAYALTGYRIDEAKAVQGALTFGVVNSLGAYALLMGIALLYARTGELAMAKIGRGLDAAAGPGGPDALVLASFVLVLTGLLVKAAAVPFHFWLPDAHAVAPTPVCMLLSGVMVELGAYGVWRVYGTVFAGPGGIPAADLTRALVTLGALTAATGAVMCWYQRHIKRLLAYSTVAHTGLFLVGLGILTPEGDDGVALYLLGHAGVKAALFACAGNLLDRFGSVDEHALHGRARPLRATAVLFAVGALALAGLPPFGTALGKAVTEEAVGGPLTVVYVAASAITAGAVLRVTARVFLGLGPRPEDAEYETSGSDEEPETPGLLRRIPDIMTTVPAVLLAAALAVGVLPGLGALVARSVNEAGSGGAHVSVHWTAHGVLLGVASTALAAALAGLAVTRPRWVAAPDWAAPLRRLQSGHVGDYVAWLLMGATVLGALALPGVLDS
>NZ_LN997842.1|WP_059254693.1|396412_397027_-|DUF4230-domain-containing-protein
MAALVLVLAVLFAGIRLAVLPGIKDLFGTETHDRSGPALLESVRDMSRYEAASGSFQVVVDLDKDAEFLPDAVRGTRTLYVGAGTVDAYVDLGRLGERDVTVDSDRTSATLRLPHARLGRPALDPDRSYAVSKQRGLLDRLGDLFSDNPNSEQAVQRLAVRHIGDAARSSGLTARAESNTTGMLRGLLRSLGFEEVRIVYGASG
>NZ_LN997842.1|WP_079080800.1|397204_397585_-|STAS-domain-containing-protein
MRHEPVPLTRQLGVYDHRGHTVLEFRGEIDIAAAAEIGPFLDRVTGRPGARVVIDLRPVEFFDCSGLRLLYRARVRVLERGGQLHLVCTHPLTLRVFRVTGLARLLPPSPDLDAALARSEAASGSL
>NZ_LN997842.1|WP_059246778.1|397719_398670_-|NADP-dependent-oxidoreductase
MSDVNTMRAISQDALGGPEVLKEVRMERPRPRPNEVLVRVRAAGVNPTDWKHRATGGFLGEPPFVLGWDVSGEVAETGIGVAAFRPGDEVFGMLPYPFGHGSHAEYVTVPARALVPKPASLDHVQAGALPLVSLTAWQALTEHADVQPGQRVLIHAAAGGVGHVAVQIAKARGAYVIGTASAGKHDFLREIGVDEPVDYRSTDVTEAVRDVDVVLDTLGGETSVRSLRVLRPGGVVVSILPVGSDDFYEEAERLGVRAVRMLVDADRAGMRAIAELAESGRLTATIAGTFPLAEAAKAHELGDTGRTTGKLVLLAD
>NZ_LN997842.1|WP_059254694.1|398756_399710_+|helix-turn-helix-domain-containing-protein
MRTRRPERVVVLALDGVYPFELGIPSRIFGAADGHYEVLTCSVDGRPVRTNADFTVGVAHGPEILETADTVVVASMATSHIPTELSDEIAAALARIRPDARIVSICTAAFVLAEAGLLDGRRATTHWQVAELFRRRYPRVDLDPDVLFVADGRILTSAGAASGVDICLHIVRTDHGSELANAVARRCVVPPFRDGGQAQYIEQPVPESGAASTAATRAWALERLDEPLTLADLAGHARMSLRTFARRFNDEVGLSPGRWLIQQRVARARHLLEASDLPVDRIAAEVGFATGASLRQHLNAAIGVSPQAYRRTFQRTR
>NZ_LN997842.1|WP_059246779.1|399787_400633_+|hypothetical-protein
MRRGLVAVAVLTAVAVAGCDDGPRPDLVVEGTPPATPYSGPLAVPTRQLDESTPRAVRLASGAAGRALECDGEIFDGSGPDGWGRSEGGATPEEGLARYFDMVQPEQPDHGYRVERAERDRVLYSYDVDGRTKVAVVVAKDQRDRPGWGPETNASCDPAELPESFTATTDWEIWTDRAGRRVPVTRLHSSTGPEHCGWQSAGFLALGDRTYARDPEGVLERDGLLRAPYRAKVRMPADARDTGYRHRDRRLWLTADRTTAYVRTPAGVEAWPRLTQGAGCA
>NZ_LN997842.1|WP_059246780.1|400657_402283_-|amidohydrolase
MHADLLFTGGPVLTPEGRTATAVAVTGDRITAVGHAEVRELAGPRTEVVDLAGRLLLPGFQDAHVHPVPAGLELSRCDLTGRTTAEATVAAVRAYADAHPEREWILGGGWSMEAFAGGTPTKELLDAVVPDRPVYLPNRDHHGAWVNSRALELAGVGRDTPDPADGRIERDASGEPSGTLQEGAMQLVGRLVPPARPADRLAALLRAQRHLHALGITAWQDALVGDFLGMDDPAEAYRTAAEDGSLTARVVGALWWDRERGAEQIPDLVAKRAAWSRGRFRAGTVKLMLDGVAENHTAALLEPYLDRCGCATANRGTSFLDPARLPAYVTELDALGFQCHFHALGDRAVRDALDAIEAAREANGAGDTRPHLAHLQVVHPDDVPRFARLGATANIQPLWAAHEPQMDELTIPFLGPERAARQYPFGSLLRSGARLAAGSDWPVSSPDPLQGIHVAVNRVEPGGTGPVFLPGERLRLADALTAYTAGSAYVNHLDDTGRVAVGALADLVVLDRDPFTGPPEAIADTRVALTYVGGERVYTAG

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Crispr_ID: NZ_LN997842_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN997842_2

874240-874343

Orphan

Consensus_repeat	Method
CCAGTACTTCTTCAGGCAGCGCTGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN997842_2

>merge|NZ_LN997842|2|874240-874343|CRISPRCasFinder
CCAGTACTTCTTCAGGCAGCGCTGGAAGGCCTTCCAGCTGTTGGTGCCGAGCTTGCCGTCGATGGAGCCCCGGTAGTTCCAGTACTTCTTCAGCCAGCGCTGGA

>NZ_LN997842|2|2|874240-874343|CRISPRCasFinder
CCAGTACTTCTTCAGGCAGCGCTGGA	AGGCCTTCCAGCTGTTGGTGCCGAGCTTGCCGTCGATGGAGCCCCGGTAGTT
CCAGTACTTCTTCAGCCAGCGCTGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN997842.1\|WP_059247190.1\|866638_867952_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274819
NZ_LN997842.1\|WP_059247189.1\|866015_866627_-\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_LN997842.1\|WP_059247195.1\|874704_875307_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059254726.1\|880672_881086_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176863
NZ_LN997842.1\|WP_059247193.1\|872306_874001_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NZ_LN997842.1\|WP_079080826.1\|867948_868836_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|275241
NZ_LN997842.1\|WP_079080825.1\|865674_865989_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|334619
NZ_LN997842.1\|WP_059247196.1\|876359_877094_-\|TIGR03943-family-protein	unknown	unknown	gnl\|CDD\|274870
NZ_LN997842.1\|WP_079080824.1\|863968_865534_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|184957
NZ_LN997842.1\|WP_059254724.1\|869763_870309_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377443
NZ_LN997842.1\|WP_063808496.1\|870606_871059_-\|flavin-reductase	unknown	unknown	gnl\|CDD\|214900
NZ_LN997842.1\|WP_059254725.1\|877090_878020_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223773
NZ_LN997842.1\|WP_059247197.1\|878320_879139_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379138
NZ_LN997842.1\|WP_063808498.1\|871275_872262_+\|AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_LN997842.1\|WP_107118060.1\|882261_882468_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234941
NZ_LN997842.1\|WP_079081272.1\|868832_869705_-\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|239204
NZ_LN997842.1\|WP_059247200.1\|884034_885573_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234721
NZ_LN997842.1\|WP_059247201.1\|885922_887032_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|226614
NZ_LN997842.1\|WP_059247198.1\|879890_880121_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|99777
NZ_LN997842.1\|WP_059247199.1\|882666_883995_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|164795

Protein	Function_ID	Function_description	E-value
NZ_LN997842.1\|WP_059247190.1\|866638_867952_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	1.61941e-147
NZ_LN997842.1\|WP_059247196.1\|876359_877094_-\|TIGR03943-family-protein	gnl\|CDD\|274870	TIGR03943, TIGR03943, TIGR03943 family protein. Members of this occur in gene pairs with members of pfam03773. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region.	3.96216e-50
NZ_LN997842.1\|WP_059254725.1\|877090_878020_-\|hypothetical-protein	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	2.73356e-40
NZ_LN997842.1\|WP_059254726.1\|880672_881086_+\|hypothetical-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	0.00085735
NZ_LN997842.1\|WP_059247193.1\|872306_874001_+\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_LN997842.1\|WP_079080826.1\|867948_868836_-\|amidohydrolase	gnl\|CDD\|275241	TIGR04448, creatininase, creatininase. Members of this family are creatininase (EC 3.5.2.10), an amidohydrolase that interconverts creatinine + H(2)O with creatine. It should not be confused with creatinase (EC 3.5.3.3), which hydrolyzes creatine to sarcosine plus urea. [Central intermediary metabolism, Nitrogen metabolism].	7.69892e-67
NZ_LN997842.1\|WP_079080825.1\|865674_865989_+\|transcriptional-regulator	gnl\|CDD\|334619	pfam01638, HxlR, HxlR-like helix-turn-helix. HxlR, a member of this family, is a DNA-binding protein that acts as a positive regulator of the formaldehyde-inducible hxlAB operon in Bacillus subtilis.	2.30015e-37
NZ_LN997842.1\|WP_059247189.1\|866015_866627_-\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	1.78862e-96
NZ_LN997842.1\|WP_079080824.1\|863968_865534_-\|MFS-transporter	gnl\|CDD\|184957	PRK14995, PRK14995, SmvA family efflux MFS transporter.	5.76763e-94
NZ_LN997842.1\|WP_059254724.1\|869763_870309_-\|hypothetical-protein	gnl\|CDD\|377443	pfam05014, Nuc_deoxyrib_tr, Nucleoside 2-deoxyribosyltransferase. Nucleoside 2-deoxyribosyltransferase EC:2.4.2.6 catalyzes the cleavage of the glycosidic bonds of 2`-deoxyribonucleosides.	0.00383107
NZ_LN997842.1\|WP_063808496.1\|870606_871059_-\|flavin-reductase	gnl\|CDD\|214900	smart00903, Flavin_Reduct, Flavin reductase like domain. This entry represents the FMN-binding domain found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes. This domain is also found in various other oxidoreductase and monooxygenase enzymes... This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.	2.44631e-53
NZ_LN997842.1\|WP_107118060.1\|882261_882468_+\|hypothetical-protein	gnl\|CDD\|234941	PRK01315, PRK01315, putative inner membrane protein translocase component YidC; Provisional.	0.00386552
NZ_LN997842.1\|WP_059247197.1\|878320_879139_+\|hypothetical-protein	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	3.58444e-08
NZ_LN997842.1\|WP_063808498.1\|871275_872262_+\|AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	7.55691e-18
NZ_LN997842.1\|WP_079081272.1\|868832_869705_-\|dihydroorotate-dehydrogenase	gnl\|CDD\|239204	cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.	3.01178e-54
NZ_LN997842.1\|WP_059247200.1\|884034_885573_-\|hypothetical-protein	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	0.00592569
NZ_LN997842.1\|WP_059247201.1\|885922_887032_+\|FUSC-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	3.10391e-07
NZ_LN997842.1\|WP_059247198.1\|879890_880121_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|99777	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.	6.9425e-13
NZ_LN997842.1\|WP_059247199.1\|882666_883995_+\|hypothetical-protein	gnl\|CDD\|164795	PHA00370, III, attachment protein.	7.0302e-06

>NZ_LN997842.1|WP_059247193.1|872306_874001_+|CTP-synthase
MQPAAHLPGAPGTTKHIFVTGGVASSLGKGLTASSLGMLLKARGLRVVMQKLDPYLNVDPGTMNPFQHGEVFVTNDGAETDLDIGHYERFLDRDLDGTANVTTGQVYSTVIAKERRGEYLGDTVQVIPHITNEIKHRIRRMATDEVDVVITEVGGTVGDIESLPFLETVRQVRHEVGRDNVFVVHISLLPYIGPSGELKTKPTQHSVAALRNIGIQPDAIVLRCDREVPTAIKRKISLMCDVDEAAVVACPDARSIYDIPKVVHAEGLDAYVVRKLDLPFRDVDWTTWDDLLDRVHNPEHEVTLALVGKYIDLPDAYLSVTEALRAGGFANRARVKIKWVTSDDCKTPAGAQAQLADVDGICIPGGFGDRGVLGKVGAIRYARENKIPLLGLCLGLQCIVIEAARNLAGIPDANSTEFDPATAHPVISTMAEQLDIVAGEGDMGGTMRLGMYPAKLAEGSIVREVYDGKEYVEERHRHRYEVNNAYRTELEKKAGIVFSGTSPDGKLIEYLEYSRDIHPYLVGTQAHPELRSRPTRPNPLFTGLVRAALARAGAVAGSAPLPVP
>NZ_LN997842.1|WP_063808498.1|871275_872262_+|AsnC-family-transcriptional-regulator
MNDSDILDAVDQRIIAALQINPRAGVAEVGRILGEHERSVARRVQRLLTLEIVHFTAEYERLRGALGHSAWLRLKARPGCLEAVGDALARRVDALNVAAVSGASGLLWCELAVPDRPLLHALAEGAVGLPDAEVLDVCLTLRPFKTAAEWHAPVLTDEEERLLRASLVQPLPALADRYELTPTDERVAGLLRRNARVSLTELARELGFSTATAGRRVASLLERRVLRLRTVVDPALLGRPARILLRLKVRPAGLEKVGAALAAHRDVHSCTAVSGPYGLLAEVCLPHETDLHGFVVDVLGPAEDVLDLETVIVTRSYRPGPGPHTPRR
>NZ_LN997842.1|WP_063808496.1|870606_871059_-|flavin-reductase
MGHFCTGVTVVTGMGAETPMGFTCQAFSSLSLDPPRVVLCVSRASVSWPAISGGGFFCVNVLAQQQRALSDRFARTGGDKFHGVDWDLSPDGAPRLAGASAWIDCRVHTEHDGGDHLVVIGDVRRLAAPADPRPPLLYHRGRYARLDDTP
>NZ_LN997842.1|WP_059254724.1|869763_870309_-|hypothetical-protein
MDAPVPANGVLSGLDVFVGGPIQHAILSTGFVGGLQDAITTAIGTVTEHGATVFSAHVVEKFGEQTAAFTPEQVSVRDFRWMKKCDVFVPVLPLLDDGTLRRTDGTHVELGWATALGRPIVMITKQPFAESASHLLKGLYRVGAVQVIDFDDFTQKPALLVDAVLAATERQREAIGASLVA
>NZ_LN997842.1|WP_079081272.1|868832_869705_-|dihydroorotate-dehydrogenase
MGLPIANPVIVGSGLLTDQERNIRRLIERGAGAVVTKTIHPSPPTGLDERILRLPVGMLNSTTYSKRTVNHWLGVLRSFAEDGLPVIASVHADSPAELAALAKDVEATGCRALELGISCLNEEDGLDDDNPDRVYAYTAETRGRTGLPIAVKLAIGEGLHDRVRAAIAGGADAITVSDTIAGAAVSPATGDLELGGVFGYSGPGIKPLVLAAIWQLRRRGFELPILASGGVGGGRDVADYLAVGANAAQVYTALHTDMYDTLQRILAETRDLVGPGSRTPAEPAPQGATA
>NZ_LN997842.1|WP_079080826.1|867948_868836_-|amidohydrolase
MSGERTAPRRLTDLTSTQVTDAVRGRTVVWPIGAVEQHGPHLPLSVDLLLAEAFADGIARELDAFTLPAQAFGARSLPQSGGGLQFPGTVHVTGGTLIDLLRETLTSLVQLPMARLVVVNGHYENEPFLFEALDQVRQQGLLDSTEVFAFSWWSLVRDTWTDAEIAEFPGWHAEHAGVTETSLMLHLHPDLVTAERPDHDRPPRAGVYLHPVDVEQISNRGILSSTSGSSAALGEKLLRHVLDEAVALVREGEGLLFAQTRPDRRRPTGDRRAATGDHRSRAPERRTAQPGGKHP
>NZ_LN997842.1|WP_059247190.1|866638_867952_-|LLM-class-flavin-dependent-oxidoreductase
MTRKFHLAFIFNFTPDDWQGPFGTGGSPWDGRFHTEVAQALERACFDYVIVEDKLMVPESYGGTSEAALKQAMVVPKHDPVPLAVAMGLATTRLGIVATLSTLAYPPFMTARLSSTMDSMLGGRFGWNIVTSAEDLAAQNFGLDKLPPRDVRYEMADEYVDVVKELFASWDPDAVVLDRENGVYADHTKVRPIHFRGKYFSVRGPLNTVPSPQHRPAFVQAGASPRGRAFAARNADSIIAIASGPQSMKEFRDDVRRRAAENGRDPDSVKVLFCVTPTLGETEQDAREKQARMVSSPQFIQDILAQVSALTEIDFAQFDLDKPLPQKLTTNGEQGTLDKFQQWGSGKTLRELVIDGAGGLVSSVDLVGTPDQVAERMGEVMEEVGGDGFMITTPLLRLNRRYIAEVTDGLVPALQRRGLTRTAYTPGNTLRQNLAEF
>NZ_LN997842.1|WP_059247189.1|866015_866627_-|malonic-semialdehyde-reductase
MTTPTTRPPALDPAAQDLLFRQARTVDRFTDEPVSEETVRFVHELVRHGPTAFNQQPLRVLLLRSAASRKRLAPHLSRGNREKTLRAPLTALLAVDTRFHEKLPELFPAFPEAADLYAGNPALRERSALLNGALQAAYFLIGIRAAGLAAGPMSGFDDAGVNREFFPDGGLSALLVVNIGRAAGAPSRPRGPRLSYEEVCTTL
>NZ_LN997842.1|WP_079080825.1|865674_865989_+|transcriptional-regulator
MEILGGRWKLAILKQLVAGTHRFGELRRALPGVTQRMLTRQLRELEKDGLVSRTVYREVPPRVEYALTDIGHSLDAITDELDKWGHWYREQVRDAVPSGSRTPG
>NZ_LN997842.1|WP_079080824.1|863968_865534_-|MFS-transporter
MSHKEAPAVPRAAGETTEPDEAARIHARRWLVLAVVSGSLLLCGTDLTVLHVAVPRMSRELEPSPAQLLWIVDVYSLTLAALLVTCGTLGDRIGRRRMVLSGFFTFGLASTACAFSATTAQLIAARAALGVGAAMIMASTVAIIRVVFTDDRERAVAIGIWTAAHSVGATIGPLVGGIVTERWGWGAVFLINVPVIVVILAVGAKVIPESRNPLPRRWDVASVALSVTGLAGVVYALKQAGEHAGVDGVILATAAGGALLLFVFVRRQRRIPEPLLDFSLFRERRFTTATLCVIGCFGSYVALLFFLTQWLQQVGGYSPLRAGLALMPLAGANAVGAVTAPWAANRWGNRWALTAALALFAAAMAVIALTGDTGRYGALLVPLLCAGYGAGIVMTLGADSIMSAAQPERSGEAAAIQETSFELGSGLGVAVLGTVLTAAYRTGLPSVPGLGGDERATAEKSYAAVEELAPHLPARTADALLQAGRHAYDRGFTAVTTIAALGLAGTALLAALMLRPRPADE
>NZ_LN997842.1|WP_059247195.1|874704_875307_-|hypothetical-protein
MTRTPPTTVTPVRLWRWRRNPLRRHSDVVEAWIVLAGWVLALVAGVFAGMLAARASDAAFEARRAQLHPVAAVLTADAARTPLAGSGYDDGRVWAVVRWTDADGSVHTDRAKVPPGAPAGTRMTVWTNEADRVVPAPVTGAAADLQSALTGALVAPAAGALVWGVGRLVRGRLIRRRMDEWDAEWRQIGPRWGNLSGGRG
>NZ_LN997842.1|WP_059247196.1|876359_877094_-|TIGR03943-family-protein
MKRPVQTLLLALMGIGLLHVALFTDIYLRYVKAGLRPLLIGSGVVLLLLGLAAAVARDRHPDPEDTGDEHGHDHTGTPRIAWLLCFPALSLLLYAPPALGAYTAARANDRPVAAQQGFAPLPATSPLPLTLTDFTKRVRQDRSRAIAHRTVRLTGFVTPAGEDGGWYLTRIIFSCCAADSQTVKVRMYGAEAPPADTWLAVTGTWHPRGTLGTRTAQAALDVRDVRPVAPPVNAYTDDLPLTPS
>NZ_LN997842.1|WP_059254725.1|877090_878020_-|hypothetical-protein
MTAGAAAVLLLSATPWPHHPAVQAWRTVSLAITVQALPFLLLGTALSGAINAFVPADLFTRVLPKRPVLAVPVAGAAGAVLPGCECASVPVAGSLIRRGVTPAAAFAFLLSAPAINPVVLTATAVAFPGDPAMVAARLLASLATAAVMGWLWLWLGKEEWLRPLLRRRNTGHRHGHSRWTEFRLGFQHDFLHAGGFLVLGAMAAATFNVTVPRSVLDAFSGSPWLSVLFLAALAVLLAVCSEADAFVAASLTGFSPTARLAFLVVGPMVDLKLIALQAGTFGRAFAWRFSTATTVVAVAASVLIGGALL
>NZ_LN997842.1|WP_059247197.1|878320_879139_+|hypothetical-protein
MSSRLSRTARTKAGALLASAAALLSAGLLHPAPALAATTAPSGHTRGHATAAVLDLDGTGRAPVVHGEDRAYDTASIVKIDILAALLLQAQDAGRPLTARERERAEPMIRRSDNAAANALWRQIGRASGLAAANKRLGLTSTTGGPGAKWGLTRTTASDQVRLLRAVFGTGGTVRAGSGGLDARSRAYIRTLMGQVVPEQRWGVSAAGAGGSGQALKNGWLQRATTGRWDVNSVGQVTVRGHRYLVAVLSDGNASMGDGVSLVERTARAAVA
>NZ_LN997842.1|WP_059247198.1|879890_880121_+|LuxR-family-transcriptional-regulator
MSATLAPSPTEAPAPALAPRERETLRHIAAGRTYLQTARHMGLSTHTVDAYLRRIRAKFNITNTAELTRMAIALGL
>NZ_LN997842.1|WP_059254726.1|880672_881086_+|hypothetical-protein
MAEYERSRTMPAQPEHVFDQAANVDQLDAWLPDALHVDVEDPPAVTVHEDRTGEDMPALLRSEPDQMRLEWGTREQGSYAGWLQVAGIGSGASEVTVHLSFFDAGHDPGEQAVNDALDGSLRRLEEQVRMRVDNAGG
>NZ_LN997842.1|WP_107118060.1|882261_882468_+|hypothetical-protein
MIVVPEPGSKRYDTRRARLRKEAVRSGVSDQDANAVADETLQQDPEWQSRGPKTERGRGPKGERPEND
>NZ_LN997842.1|WP_059247199.1|882666_883995_+|hypothetical-protein
MPLSTPGPRALRQTAGALGALALLALGAAPASADDPATGLVLGALAPVDGVKPGAEIQVPATFTNTGGAALGKVWMSYSVTRGLSHTAIPSNCLRYEVSSFDEAPSSSDLVCAFDQQIEPGVLYAPERPATLKALDHALHDELRVSVAAYDPAPTDGAADPVRGTGPAVKLVERPDEKPAAPGSARHDGWDAADVPVTTDNTADFQVTGARLRGRVGDTVDVQLKFTNAGPGWVLRASDGPATHVLVKMPAGTTVTKADGYCEKAGDGGYECGTSQRWVDEGRGETYEFKVRIDKAVAGAEGSVALTDESRPFDADKTNDTAAITLDVTGGSTGGSGSAGGGSASSAGGTGTTGGSGSTAGGSATGGTSGSASAGGATGGADGGSDGGSASAASSAASSASGGNLANTGSGSVLPVAAAAAGAVVVGAGAIVVVRRRAGRQR
>NZ_LN997842.1|WP_059247200.1|884034_885573_-|hypothetical-protein
MPPSPPPMPAGPPPAPPDAWRALATALLNLSGLGLGYALLRRWVLTAACWAATAVLLLVALPADADGIPGAALAGYAVLLLAAAVHGGFAGLRTRPARPHRAPLALLLGVLLLAVPAGGTLWYQDAHDEAVERALLGRLERADDLVAASGRRSFGSAARDYRTALEVYRDIAVHHAGSRAAEKVPDSLRTYYTTVGAAYGHREYCAAVEPLKYLRTVPDTIPKEHLGSLAGWPDDRLATALYECGAGQLATGGADWVTRFGDLLDTFPRSGAAAKVVPAVDAAVRKAEKAVDGDEPCAAVERLRDLDTRIGDLAGAAGDADGRLAKAAGRAGRSGDTGRYACGVDQYKDGDFDAAQKTMEQFAADHENHRNRARAEKIAIAAEVAQTLPAAGKKLPTTASGGSISVTVKNDSPDDITVLYTGPVTGSFTLKGCGGCKAYTLADTVIPGFKPCNDSSKHYPQRTISLPVGTTYFVHKPQGGSTATPASDTARLRSGYVYTECAYSTQRLGSGY
>NZ_LN997842.1|WP_059247201.1|885922_887032_+|FUSC-family-protein
MRGARWSALPARMRRLGRTDGAEAARATVAAGLTWQTCTALLHTPDPYAGAVAALLIVETTVVRTASAALRYGAGCLLGVLVAVPGALYARPGMAGLALVVFASVLLARRGFLGHHGIHVPTTALITFALLRGHHRGELVSHLAEIVLGIGFGLACSALLFPAVRVRSAERALEELRALVARYLDGLADAVVRRERPRDVLGPSWEQDLDTALERARTAVDEAHESMRWNVRPVARRRRWHLDRRVLCTLADVARELAATGRLLDARPGAARGPGPETAFARSYARLLRTTALCAYSCRGGRPHPALPATRRALTRLGSARCDPPAADAETGRLLRHLESALSCLSAPPPAPPVRTHRALRPLRHTPRR

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Crispr_ID: NZ_LN997842_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN997842_3

1891691-1891795

Orphan

Consensus_repeat	Method
GCCGTTGAGGCGGAAGACCGTCGGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN997842_3

>merge|NZ_LN997842|3|1891691-1891795|CRISPRCasFinder
GCCGTTGAGGCGGAAGACCGTCGGCTCGGGACGGGCTGTGCACGGCGGGGCCGGTCGTCAGCCGCCCGAGCAGACGGTGCCGTTGAGGCGGAAGACCGTCGGCTC

>NZ_LN997842|3|3|1891691-1891795|CRISPRCasFinder
GCCGTTGAGGCGGAAGACCGTCGGCTC	GGGACGGGCTGTGCACGGCGGGGCCGGTCGTCAGCCGCCCGAGCAGACGGT
GCCGTTGAGGCGGAAGACCGTCGGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN997842.1\|WP_059247946.1\|1905878_1907009_+\|2-polyprenyl-6-methoxyphenol-hydroxylase	unknown	unknown	gnl\|CDD\|235874
NZ_LN997842.1\|WP_059247929.1\|1879613_1880822_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_LN997842.1\|WP_059247931.1\|1882676_1883690_+\|acetamidase	unknown	unknown	gnl\|CDD\|225279
NZ_LN997842.1\|WP_059247927.1\|1876794_1877961_-\|xylose-isomerase	unknown	unknown	gnl\|CDD\|237170
NZ_LN997842.1\|WP_059247930.1\|1881101_1882586_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_LN997842.1\|WP_079080878.1\|1898861_1899494_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379501
NZ_LN997842.1\|WP_107117970.1\|1898587_1898827_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059247938.1\|1895517_1895742_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059247935.1\|1887852_1889919_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059247933.1\|1884464_1885772_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|225822
NZ_LN997842.1\|WP_059247928.1\|1878116_1879562_+\|xylulokinase	unknown	unknown	gnl\|CDD\|198375
NZ_LN997842.1\|WP_059247934.1\|1885827_1887351_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143434
NZ_LN997842.1\|WP_059247943.1\|1902848_1903766_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_LN997842.1\|WP_059247945.1\|1904897_1905854_+\|cyclase-family-protein	unknown	unknown	gnl\|CDD\|377240
NZ_LN997842.1\|WP_059247944.1\|1903908_1904901_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|376566
NZ_LN997842.1\|WP_059247942.1\|1899742_1902568_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|369272
NZ_LN997842.1\|WP_059247940.1\|1896918_1898523_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_LN997842.1\|WP_059247932.1\|1883753_1884359_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|376556
NZ_LN997842.1\|WP_059247939.1\|1896163_1896922_+\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|235816
NZ_LN997842.1\|WP_059247936.1\|1889915_1891457_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380492

Protein	Function_ID	Function_description	E-value
NZ_LN997842.1\|WP_059247929.1\|1879613_1880822_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	3.66135e-53
NZ_LN997842.1\|WP_059247931.1\|1882676_1883690_+\|acetamidase	gnl\|CDD\|225279	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion].	1.77752e-57
NZ_LN997842.1\|WP_059247927.1\|1876794_1877961_-\|xylose-isomerase	gnl\|CDD\|237170	PRK12677, PRK12677, xylose isomerase; Provisional.	0
NZ_LN997842.1\|WP_059247930.1\|1881101_1882586_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	3.30782e-39
NZ_LN997842.1\|WP_079080878.1\|1898861_1899494_+\|hypothetical-protein	gnl\|CDD\|379501	pfam14200, RicinB_lectin_2, Ricin-type beta-trefoil lectin domain-like.	4.24716e-25
NZ_LN997842.1\|WP_059247946.1\|1905878_1907009_+\|2-polyprenyl-6-methoxyphenol-hydroxylase	gnl\|CDD\|235874	PRK06847, PRK06847, hypothetical protein; Provisional.	7.94943e-176
NZ_LN997842.1\|WP_059247944.1\|1903908_1904901_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|376566	pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family. This family consists of fumarylacetoacetate (FAA) hydrolase, or fumarylacetoacetate hydrolase (FAH) and it also includes HHDD isomerase/OPET decarboxylase from E. coli strain W. FAA is the last enzyme in the tyrosine catabolic pathway, it hydrolyzes fumarylacetoacetate into fumarate and acetoacetate which then join the citric acid cycle. Mutations in FAA cause type I tyrosinemia in humans this is an inherited disorder mainly affecting the liver leading to liver cirrhosis, hepatocellular carcinoma, renal tubular damages and neurologic crises amongst other symptoms. The enzymatic defect causes the toxic accumulation of phenylalanine/tyrosine catabolites. The E. coli W enzyme HHDD isomerase/OPET decarboxylase contains two copies of this domain and functions in fourth and fifth steps of the homoprotocatechuate pathway; here it decarboxylates OPET to HHDD and isomerises this to OHED. The final products of this pathway are pyruvic acid and succinic semialdehyde. This family also includes various hydratases and 4-oxalocrotonate decarboxylases which are involved in the bacterial meta-cleavage pathways for degradation of aromatic compounds. 2-hydroxypentadienoic acid hydratase encoded by mhpD in E. coli is involved in the phenylpropionic acid pathway of E. coli and catalyzes the conversion of 2-hydroxy pentadienoate to 4-hydroxy-2-keto-pentanoate and uses a Mn2+ co-factor. OHED hydratase encoded by hpcG in E. coli is involved in the homoprotocatechuic acid (HPC) catabolism. XylI in P. putida is a 4-Oxalocrotonate decarboxylase.	1.23402e-75
NZ_LN997842.1\|WP_059247933.1\|1884464_1885772_+\|GAF-domain-containing-protein	gnl\|CDD\|225822	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription].	2.73809e-27
NZ_LN997842.1\|WP_059247928.1\|1878116_1879562_+\|xylulokinase	gnl\|CDD\|198375	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases. This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	0
NZ_LN997842.1\|WP_059247934.1\|1885827_1887351_+\|aldehyde-dehydrogenase	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
NZ_LN997842.1\|WP_059247943.1\|1902848_1903766_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.14671e-38
NZ_LN997842.1\|WP_059247945.1\|1904897_1905854_+\|cyclase-family-protein	gnl\|CDD\|377240	pfam04199, Cyclase, Putative cyclase. Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form part of the active site.	8.02542e-16
NZ_LN997842.1\|WP_059247942.1\|1899742_1902568_+\|GAF-domain-containing-protein	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	9.10586e-46
NZ_LN997842.1\|WP_059247940.1\|1896918_1898523_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	9.08571e-42
NZ_LN997842.1\|WP_059247932.1\|1883753_1884359_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|376556	pfam01510, Amidase_2, N-acetylmuramoyl-L-alanine amidase. This family includes zinc amidases that have N-acetylmuramoyl-L-alanine amidase activity EC:3.5.1.28. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala). The structure is known for the bacteriophage T7 structure and shows that two of the conserved histidines are zinc binding.	7.89794e-38
NZ_LN997842.1\|WP_059247939.1\|1896163_1896922_+\|glucose-1-dehydrogenase	gnl\|CDD\|235816	PRK06500, PRK06500, SDR family oxidoreductase.	4.13073e-82
NZ_LN997842.1\|WP_059247936.1\|1889915_1891457_+\|hypothetical-protein	gnl\|CDD\|380492	cd06268, PBP1_ABC_transporter_LIVBP-like, periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.	6.39314e-07

>NZ_LN997842.1|WP_059247936.1|1889915_1891457_+|hypothetical-protein
MKLWPAGPLYQALLVMVAATAVAAGGYFVYRSWFADDPACAPGVSERGPRHECVGVTDGAYAYDPSLKEVTKRIEAENKWVEKRTEGAGTSPATIALMIPMISDNPAEQREYVEQVEGAYLAQYRANHNTNRQPPIRLLLANPGRGYEHWPVVAEQLAQAASDEKQNLRAVAGINISLPETKAAIGHLTKQLHIPVVAGPMTADDIANEEKNPHRYPGLARVAPGNADQADALASYGKDIKPAETMVIEDIREGDNYLESLRKRFEELADGAPNAPETFRSPPDFNDEGNLANDFHQMVPDICTSAAKTIYFAGRPVQLRQFLIELGDRNCNKHYTVITGSHASTLTVDEKFADHWDALTKGAGITLRYAALAHPDAWGDKSTEKTGGSRAALKELTGLLPKVGATPSDLVDGRIIITYDAVGTAVEGIRNDAVGKVTMPTLAEVADNWLRLHGTNRVEGASGWICLDQYGNPHNKAVPIVHLDPRKKTALFDRITWPADRAPDVNCSIPRQG
>NZ_LN997842.1|WP_059247935.1|1887852_1889919_+|hypothetical-protein
MTLYGRSAVLNELVPELVGLKPESHSRLRIPGGSPLLVQCTGGRRTGKTALLERLAERYAQRIPQAYADLGADDFGQPGLAPPDDDGTANASRTTDLLFYLMDRLSQQPREFRGKLAFPRLTQGLLAVTSWQSVQPAELAAARSRLAGLLRESQPDVQERRNRVAGWITQVMEGLGTVPGLGPGLREIVPPLAEIVTTELLGPHANRDGLRWWSERRVSSQGDAHAQLTELAMRFRGDPDDRRLAERHLHAALLEDMADHYTRLRRANRVPRPLLLLDNVHTALGQEVWDTLTRVWHEEAPRTRPGVVATSLAAEPAVPDPESTPSTRSVAGPFWRQESPDVPAGWVLRLPLAQLGLDEVKEMFGADRPEPGVAQVIHRLSAGRAGIAHTLVQAVRAQALRGEPLDVRSLLDVPYGAEPGPSVNERLLRILIPAEVARARLVYYAPALDDSAAHQLSAHYPPGDPGGVPVQEALVQLRDDHWGRCPWPGVDGPFVGDPTLRALLLHHLRIRAQETPSGEQWRNIHLLLRSLYAPDVYGGTAAVHDVRYLHHSLAIGDADTVAQALHRRLAEQDAPSWLTALNLICAAPHPPANLADPPAAPLSCCTADDDPVHQAVRLLLINLWEQSHPLAPPDTEKINSVRLQLLTLAQRSAPAAQRVFFQAYEQWPLLLNRWRQAPDLPTYGEART
>NZ_LN997842.1|WP_059247934.1|1885827_1887351_+|aldehyde-dehydrogenase
MTRYAAPGTEGSIVSYQARYDHFIGGAYVPPARGRYFENPSPVNGQPFTEIARGTAEDVERALDAAHEAAPGWGRTPVAERSDILLKIADRMEAYLEPLAVAESWENGKPVRETLAADIPLAIDHFRYFAGAIRAQEGSLGEIDDDTVAYHFHEPLGVVAQIIPWNFPILMAAWKLAPALAAGNAVVLKPAEQTPASIHYWMSLIADLLPPGVVNIVNGFGVEAGKPLASSPRVAKVAFTGETTTGRLIMQYASENIKPVTLELGGKSPNIFFDDVWAHDDDFRDKALEGFTMFALNQGEVCTCPSRALIQRGHYAEFLEAAVERTRRIRPGHPLDTDTMIGAQASNDQLEKILSYLDIGRQEGAKILTGGERVEYDGELKGGYYVQPTIFEGDNRMRIFQEEIFGPVVSVASFDDFDDAIKIANDTLYGLGAGVWTRDINTAYRAGRAIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRETHKMMLEHYQQTKNLLVSYSPKKLGFF
>NZ_LN997842.1|WP_059247933.1|1884464_1885772_+|GAF-domain-containing-protein
MTDPWVALEPGADPAERVRVLRRAHETFTTAGTVPRPVRSVVAESWRRSARAGVGPDGAASVELTDGDLGAYRAEHPLARVMPLFRELMGTFAADGEHLLAVCDAHGRLLWVEGHAATRRRADRMNFVPGARWSETAVGTNAPGTAVAVDRPVQVFAAEHFIRRVQPWTCAAAPVHDPRTGRVLGAVDITGGDGLAHPHSLGFVRAVARAAEAQLALLTPPGAADQAPLLSALGRDEAELSLDGRRMRLSRRHSEILVLLSRHPEGLSGDELLCGLYADESVTPVTLRAELARLRRLLGPGLLASRPYRLTAAVESDATVVERRLETGGLTAAVEAYSGPLLPGSQAPAIVRLRERLAGALRTALIAHRDPDLLADWAHAPWGEDDIEVWRALAAVRPTAPVRARLAALEAELAVPAGRFPARARGATYLQRPLA
>NZ_LN997842.1|WP_059247932.1|1883753_1884359_+|N-acetylmuramoyl-L-alanine-amidase
MDMDRARPRLSRRRLLKGAALAAVPYALLPEPRAGAQTGFVDYPPAEWRPASSSNYTVADRPGDYAIDRVIIHVTQETYADTLAIFSNPQKKVSAHYLVRSADGHVAQCVREADIAWHAGNWSYNTRSIGIEHEGWVDRPAYFTNALYEESAKLTAAICATYGIPRDREHIIGHYQVPGTDHTDPGPKWDWVRYIRLVNFA
>NZ_LN997842.1|WP_059247931.1|1882676_1883690_+|acetamidase
MTEPRILTVRPEPDQYAWTFGGAAPLARIAPGTVLDLYTEDCFAGRVRSEKDLVSEVCEFPYLNPQTGPFHIEGAEPGDTVAVHFVSIEPARDWAASTTVPLFGALTSTHTTAALQPPLPERVWIWQLDRARRTALFQARDSDFRAELPLDPMHGTVGVAPANLEVRSALVPDAHGGNMDTPEMRAGVTCYLGVNVEGALLSLGDGHARQGEGETCGVAVECAMNTVVVVDLLKGVTTPWPRLESDTHIISTGSARPLEDAFRISQLDLVQWLVRDYGFSELDAYQFATQAVESPLANVCDTNYTCVAKLRKEWLPARETYRAVHARLRETARALRG
>NZ_LN997842.1|WP_059247930.1|1881101_1882586_+|APC-family-permease
MDGEPSGGLRRDAIGLREVLFQSITAMAPAAAVAASIPSGAAFAGGSLPLAVLIALVACLFTASCVAELARELPAAGSVATYAARGLHPAVGFLVGWAYVFVEMLVPPLLLLQLGFTAAGTLHAEWSAYPADLWWPWSLAGAGVIAVAGCLGVRASARLGVVLGVFEVLVLVVFAVLLIGRAGGANTLSVFGTAHTADGYSGAAGVFAGSVYTVLAFAGFEAAAPLAEETRDPRRTMHRAVLGAALGIGLFYVLTTYAMTVYFGPDRFAEFGASGAASWEGVARASFGLFWVLVFLAVVNSTIANANACANVSTRTAFALARIRVLPGLLATLHPRHRSPVAGIAVQTAVAVAAVLGLGLAYGPVTAFLLLATVIVTVVVGVYIIVNLSCAGYFLRSGRAAVKPVRHLLFPVLGSAAFVPALLTAAGLPVFDFVTELTAPVSYAGPVVGAWMAVGAVVLLVLVRRHPERIAETARVHLDAYDPGGGRRSGTVPR
>NZ_LN997842.1|WP_059247929.1|1879613_1880822_+|ROK-family-transcriptional-regulator
MTAPLHEARPPGAGRALPDTQQGMRRRNLARVLHAVSAEGSLSRAAVASRIGLTRAAVSTLVDELIRWGLLEELGPERPGRVGRPGSALAVSGRGPAGIGAEIGVDHLAVCAVDLRGEVRARAVRHGANRGRAAEPVTEELTALIRQVVAEAERAQLWPAGLAVAVPGLVARDGRTVVRAPNLDWHGTDLAPLLPADWPLTVDNEANFGALAELWLGAGTPGDFLHVSAEIGIGAAVVVDGRLLRGTRGFAGELGHVPVRPDGPPCPCGGRGCLEQYAGEDAVLRAAGLQPREDLVGLLAERAEAGDEGVRAALRDAGTALGIALTGAVNLLDPETVVLGGALAGLSPWLLPSLESELTGRTAGPACPVTVSPLGPQGPLLGAAHSVVRAVLDDPATVAERS
>NZ_LN997842.1|WP_059247928.1|1878116_1879562_+|xylulokinase
MSAAEGPLVVGVDTSTQSTKALVVDAATGQVVASGQAPHTVTSGAGRESDPCQWWEALCAALRQCGDAAHEAAAVSIGGQQHGLVTLDEHGEPVRPALLWNDVRSAPQARRLVEELGGPKAWAERTGSVPGASFTVTKWAWLAEHEPDAVRATRAVRLPHDYLTERLTGQGTTDRGDVSGTGWWASGTEAYDEETLAHIGLDPALLPRVVRPGEVAGTVRDSHDLPFSKGTLVAAGTGDNAAAALGLGLRPGTPVLSLGTSGTVYAVSRHRPTDPTGTVAGFADARGDWLPLACTLNCTLAVDRVAALLGLDREAVEPDGSVTLLPYLDGERTPNLPHASGLLHGLRHDTTAGQLLQAAYDGAVHALLGALDLVLDADADRGTPLILIGGGARGTAWQQTVRRLSGRPVQVPEARELVALGAAAQAAGLLTGEDPAAVARRWNTAAGPVLDAVERDTSTLDRISGVLSDAAPLLERDTNTP
>NZ_LN997842.1|WP_059247927.1|1876794_1877961_-|xylose-isomerase
MSYQPTPEDRFTFGLWTVGWQGRDPFGDATRRALDPVETVQRLAELGAHGVTFHDDDLIPFGSSDTERESHIKRFRQALDATGMTVPMATTNLFTHPVFKDGAFTANDRDVRRYALRKTIRNIDLAVELGARTYVAWGGREGAESGAAKDVRAALDRMKEAFDLLGEYVTSQGYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGKLFHIDLNGQSGIKYDQDLRFGAGDLRAAFWLVDLLESAGYEGPRHFDFKPPRTEDLDGVWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAADGLQALLGDRAAFEDFDVEAAAARGMAFERLDQLAMDHLLGARG
>NZ_LN997842.1|WP_059247938.1|1895517_1895742_-|hypothetical-protein
MRKGEQITGTAREKLAREMKEQYEGGRSIRAIAEAYGRSYGFVHRVLTETDVSLRGRGGEHPQRRLGTAAPSGR
>NZ_LN997842.1|WP_059247939.1|1896163_1896922_+|glucose-1-dehydrogenase
MQRFTNKTALITGGTSGIGLATARRLLDEGAYVVITGRDQTRLDAAVAHLDAVDDRVLAHRADAASLSDLDALMRRIETWRGSLDAVFANAGTGIFKPTADITEDDFDRTVDINFKGVFFTVQKALRLMPRGGAVVINASWTLHRGLPVASVYSASKAAVHNLARTMGSDLAARGIRVNSVSPGYIDTAMWREANPHPDAEARNSAEVALGALGHPDEVAAAVAFLASDDAAYITGQDLVVDGGLVGSVPAA
>NZ_LN997842.1|WP_059247940.1|1896918_1898523_+|MFS-transporter
MSTACDAAPRQADRQRAAVPVLVAVLLALLVLPTSMTGSGVALPAIGRESGASLAALQWVVHGYNLTFASFLLACGSLADRWGRRRAFAGGAALFTVASAVSAAADGILLLDFARALAGVGAAALLTSGSSLIGGTFRGKARGRAFGAVGITTGAGLALGAMAAGLVTDTLGWRAFFGLHAALMAVVWCTVPLLPRDGAEEHAVRGRRPAGEDGTEGSRPVRVDWAGTAAFSGGLFLLMLGTVEGPQRGWGSAEVLGLLVGSVVLLAAFALVERQVRHPMLDLRLLRNRQFTALCLIPVVATLSFVILLPLLPNYLMVANGYSSRDAGGVMLLMTLPILVTPLAATRLLRWGLTLRGVFGLSLLCLTVGVGWLAAVLEPGLTPGTLAGPLITLGVGLGLNFGLVDGAVLDVVAPESTGTAAGFLNTLRLGSEALAIAAVSAALVNLVRKPFDARLNEFPSYDGSSGRLANSVNAGDLSGPLSELPASVRPDFTALVTHGLTDAWHTVLWASAVLCAVTSAVICFLLGRSTTGTR
>NZ_LN997842.1|WP_107117970.1|1898587_1898827_+|hypothetical-protein
MAYLPRRGRKEAGVRHHVVLSLVVRQVPDHGCYRAGGAQAPRGRAARPARWDHPRGEVASVPRKCGPAANDRQPVGGPL
>NZ_LN997842.1|WP_079080878.1|1898861_1899494_+|hypothetical-protein
MTGDGSGPGRARTSTPTKGNVFMRFSRALAAAGVTMALSAVAAPGPAAAAPAAAPERPMTGTHLAGTADGAIDARATVFIIRNHSGKCLEIENSSKRNGARAQQWTCNGQAGAKWKLRNLGGNRAEIINVRSGKCLEIENSSKRNGARAQQWTCNGQDGAKWRFVETSGDRLYIVNVRSGKCLEIENSSRRNGARAQQWTCNSQAGSLWS
>NZ_LN997842.1|WP_059247942.1|1899742_1902568_+|GAF-domain-containing-protein
MEVYPTPSGRGHGEGALPDTGVRPEILASWQRSQSLGIDRERAALPIESDLDPDSRLIRAATPVLDHLYERFAGVPVTVALADSRANIVDRWGDPAGLRLMDAASLVPGANVDERFMGTSSVSMVLSTRAPFVVVGHEHFLHDLKELTCMAAPVRDPVGGTVRGAVNLSVPRELANPGMALVLQDATERIEERLLELSTAREIQLMRSFQRARERGGHAELELGSGELSRLGGPAPRLTSQERLILLERAVELISSTGETFAEVPLAGSRTALLRRRELHHGDAEGAAVEVSFEEARGTGLTGRTTATGPDGRRVPLLDRPAEAAEANARGATAEPQAAGPADAWLLLVGEPGVGRLAAEARGRLSLLNEAGVRLGTTLDMRRTAEELAEIAVPRFADLVVVDLMDCVLAGEEPPAGRLRPDVALRRVAARTGEESRDFAIAGADEPVGYPAGTPQARCLETGKPVTDSVMTAALAGHPADRVHPVDLLGEGVHSYLGAPLSARGSVLGLAGFYRRGRTRPYEQDDLTLAGELAARAAISVDNARRYRREHQASLTLQRSLLPRALPRLSAVDLASRYLPADARAGVGGDWFDAIPLSGMRVALVVGDVPGNGLQAAATMGRLRTAVRTLAGLDLLPEEVLAHLDDLVSRAPDDSADDQDPATGTTCLYVIYDPVSCRCTAARAGHPPPAVLKPGGRAELIDLPAGPPLGLGGIQPYESATVDLPADSLLTMYTDGLLKESRGYGDTEAHTGRLLDSLNQAGPALEDICDRVADTLPPGGPHDDVALLLARVHALPEDRVASWEFPSEPSAVARARELTRAQLAAWGMSELDFNTGLVVSELVTNAVRYGGQGPVGLRLLRDDSLICEVSDRSNTSPRIRRAATTEEGGRGLFLVAQFTKSWGARFMPQGKTVWAEQIPQPEQPASEPDEQALLAMFDDAG
>NZ_LN997842.1|WP_059247943.1|1902848_1903766_-|LysR-family-transcriptional-regulator
MNLARLDLNLVVALRALLEERNVTRAGQRVGLSQPAMSAALARLRRHFDDDLLARVGGHYELTALGQVLLDRTATAYDVLERLFSSQADFDPAKENREFRLMASDYAVAVFGTELARVVHEEAPGIRLRFTQTPPTVVDDTATLLSATDGLLMPHGIISDFPATDLYDDRWVFLVARDHPGVGDRLTRRDLARLPWVTYQRTYDAPAVRQLGMLGIEPRAEVSVDSFQLLPLMIAGTRRIALIQARLARLLTPIAAVRVVEPPYEAVPLREAMWWHPVHTHDAAHIWLRETAARVGARLPRTAEE
>NZ_LN997842.1|WP_059247944.1|1903908_1904901_+|fumarylacetoacetate-hydrolase-family-protein
MKPEPASALFAGPFALAALSAPDGPEFPALVTPDGRAVDLRDVFGDDRLTTLDVLDRWETTLPRLRAVAADTGLARAAVTELRVHAPVAPRQVFQSGANYRQHVIDLHVAHRAPGDDRPESERRAEAAEIMDRRAAEDLPYVFIGLPTSIGGPYDDVVLPAWAEQPDWELELAVVIGRPAHRVPVAEAPEYIAGYTIANDLTDRAAVFRRDMPRIGTDWLRSKNAPGFTPLGPWIVPAESIANPDDLRVTLKLNGETMQDESTQDMIFKVARMVSYASQTARLLPGDLVLTGSPAGNGMHWGRLLRDGDVMEGTVTGLGVQRTRCVAEAS
>NZ_LN997842.1|WP_059247945.1|1904897_1905854_+|cyclase-family-protein
MNRLDPEGAIAEAAEAYSNWGRWGADDRIGTLNFLDEGKRREGAALVRRGAAFSLSQAFDMNGPQKGWRRRTNPVHTMLDTGSDAALGVQGFPHGLGGADDVIAMPLQCSTQWDGLGHIFDHGKAWNGRAAERVVTADGDLVTGIEHMAPHVAGRAVLLDVGRVIGVDGELPDGFAITEEHLTATAEAHGVAVGRGDLVLVRTGQLARARREGWGDYAGGPAPGLSFTTAGWLHRTEVAAIATDTWGFEVRPNEFEHAFQPLHQVAIPHIGLLISEMWDLEALAEDCAADGVHDVWLTAAPLPITGAVGSPVSPVAVK
>NZ_LN997842.1|WP_059247946.1|1905878_1907009_+|2-polyprenyl-6-methoxyphenol-hydroxylase
MSTARTVLVIGGGAAGNAVTVLLRRAGVTVDLIEAKDDWNATAGSGITLQGNALRVLRELGVWDRVRESGFGFGSVGITAPDGTVLHIARDLRTGGDDLPATVGMRRPQLQRILMDAVRAGGASVRLGTTAEIVDQDADGVSVRFSDGSEGRYDLVVAADGLSSATRAAVGITDKPEPTGMAIWRVAAPRPAGVDRTDLAYGGPAYIAGYCPTSDTTLYAYVVEAHRDRASIPRETYAEEMRRLASAYGGHWPEITAHITDPAQVNYTWFDQLLVEGSWHRGRVVLVGDAAHCCPPTLAQGAAMSLEDALVLAQLLTASDTWDDALFQAYYERRVARVRPVVEASVQIGRWQLDGVRDADLPGLMGRTMAMLRELP

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Crispr_ID: NZ_LN997842_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN997842_4

2710762-2710875

Orphan

Consensus_repeat	Method
GAAGCCGACCAGCCAGCCGGGCCGTGCC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_LN997842_4

>merge|NZ_LN997842|4|2710762-2710875|CRISPRCasFinder
GAAGCCGACCAGCCAGCCGGGCCGTGCCGAGGTCGAAGGGCCTGAAACCGAACCGCCGACCAGAGCCCGCCGGGGCCGAAGATCCAGAAGCCGACCAGCCAGCCGGGCCGTGCC

>NZ_LN997842|4|4|2710762-2710875|CRISPRCasFinder
GAAGCCGACCAGCCAGCCGGGCCGTGCC	GAGGTCGAAGGGCCTGAAACCGAACCGCCGACCAGAGCCCGCCGGGGCCGAAGATCCA
GAAGCCGACCAGCCAGCCGGGCCGTGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN997842.1\|WP_059248574.1\|2716184_2717588_+\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_LN997842.1\|WP_079080917.1\|2711095_2712115_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_LN997842.1\|WP_059248573.1\|2714565_2716095_+\|peptidase-S8	unknown	unknown	gnl\|CDD\|173799
NZ_LN997842.1\|WP_059248576.1\|2719920_2720154_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059248578.1\|2721131_2722916_+\|glycoside-hydrolase-family-15-protein	unknown	unknown	gnl\|CDD\|225922
NZ_LN997842.1\|WP_059248562.1\|2702603_2702954_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059248567.1\|2707802_2709071_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_LN997842.1\|WP_059248561.1\|2701933_2702626_+\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_LN997842.1\|WP_059248570.1\|2710380_2710599_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059248565.1\|2704831_2706355_+\|TldD/PmbA-family-protein	unknown	unknown	gnl\|CDD\|223389
NZ_LN997842.1\|WP_059248571.1\|2712270_2713926_-\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|271374
NZ_LN997842.1\|WP_059248564.1\|2703885_2704590_-\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|273824
NZ_LN997842.1\|WP_059248572.1\|2713922_2714279_-\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|377315
NZ_LN997842.1\|WP_059248568.1\|2709199_2709481_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_LN997842.1\|WP_059248566.1\|2706351_2707746_+\|peptidase	unknown	unknown	gnl\|CDD\|223389
NZ_LN997842.1\|WP_059248569.1\|2709726_2710143_+\|DUF3099-domain-containing-protein	unknown	unknown	gnl\|CDD\|378630
NZ_LN997842.1\|WP_059254885.1\|2718838_2719822_+\|DEDDh-family-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|180377
NZ_LN997842.1\|WP_059248575.1\|2717647_2718358_-\|VIT-family-protein	unknown	unknown	gnl\|CDD\|153123
NZ_LN997842.1\|WP_059248563.1\|2703112_2703880_-\|enoyl-[acyl-carrier-protein]-reductase-FabI	unknown	unknown	gnl\|CDD\|236124
NZ_LN997842.1\|WP_059248577.1\|2720203_2721001_+\|SURF1-family-protein	unknown	unknown	gnl\|CDD\|119401

Protein	Function_ID	Function_description	E-value
NZ_LN997842.1\|WP_059248574.1\|2716184_2717588_+\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	9.80042e-40
NZ_LN997842.1\|WP_059248573.1\|2714565_2716095_+\|peptidase-S8	gnl\|CDD\|173799	cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	3.04302e-52
NZ_LN997842.1\|WP_059248577.1\|2720203_2721001_+\|SURF1-family-protein	gnl\|CDD\|119401	cd06662, SURF1, SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring complex of the respiratory chain, is an assemblage of nuclear and mitochondrially-encoded subunits. Its assembly is mediated by nuclear encoded assembly factors, one of which is Surf1/Shy1. Mutations in human Surf1 are a major cause of Leigh syndrome, a severe neurodegenerative disorder.	1.98636e-45
NZ_LN997842.1\|WP_059248567.1\|2707802_2709071_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_LN997842.1\|WP_059248561.1\|2701933_2702626_+\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	4.6479e-53
NZ_LN997842.1\|WP_079080917.1\|2711095_2712115_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	0
NZ_LN997842.1\|WP_059248565.1\|2704831_2706355_+\|TldD/PmbA-family-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	6.55907e-100
NZ_LN997842.1\|WP_059248571.1\|2712270_2713926_-\|cation-acetate-symporter	gnl\|CDD\|271374	cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	0
NZ_LN997842.1\|WP_059248564.1\|2703885_2704590_-\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|273824	TIGR01830, 3-oxoacyl-_reductase_FabG, 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. [Fatty acid and phospholipid metabolism, Biosynthesis].	5.49401e-123
NZ_LN997842.1\|WP_059248572.1\|2713922_2714279_-\|DUF485-domain-containing-protein	gnl\|CDD\|377315	pfam04341, DUF485, Protein of unknown function, DUF485. This family includes several putative integral membrane proteins.	9.92792e-34
NZ_LN997842.1\|WP_059248568.1\|2709199_2709481_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	8.25526e-06
NZ_LN997842.1\|WP_059248566.1\|2706351_2707746_+\|peptidase	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	3.60215e-42
NZ_LN997842.1\|WP_059248569.1\|2709726_2710143_+\|DUF3099-domain-containing-protein	gnl\|CDD\|378630	pfam11298, DUF3099, Protein of unknown function (DUF3099). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	4.74096e-20
NZ_LN997842.1\|WP_059254885.1\|2718838_2719822_+\|DEDDh-family-exonuclease	gnl\|CDD\|180377	PRK06063, PRK06063, DEDDh family exonuclease.	9.68831e-172
NZ_LN997842.1\|WP_059248575.1\|2717647_2718358_-\|VIT-family-protein	gnl\|CDD\|153123	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	8.05332e-100
NZ_LN997842.1\|WP_059248563.1\|2703112_2703880_-\|enoyl-[acyl-carrier-protein]-reductase-FabI	gnl\|CDD\|236124	PRK07889, PRK07889, enoyl-[acyl-carrier-protein] reductase FabI.	6.0161e-176
NZ_LN997842.1\|WP_059248578.1\|2721131_2722916_+\|glycoside-hydrolase-family-15-protein	gnl\|CDD\|225922	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism].	4.42678e-133

>NZ_LN997842.1|WP_059248570.1|2710380_2710599_+|hypothetical-protein
MSDETPICSAKGCRATAVWVLAWNNPKIHTPERRKTWLACEEHREHLSQFLGVRGFLKDVVAFEEWRAAEGA
>NZ_LN997842.1|WP_059248569.1|2709726_2710143_+|DUF3099-domain-containing-protein
MRKQHGGSGQVFRITGARTGLAEDVRGRQRRYVISMSIRTVSVILAVALWNVERYVAIVALVLGAALPYIAVVIANAGRERPPSLPSTFVTAPMRPMIAPAPAEDERAEAWQSVRESAPGDGPANPAAGVRGERPGPA
>NZ_LN997842.1|WP_059248568.1|2709199_2709481_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGWLWAIIVGFVLGLIAKAVIPGKQHSPLWLTTICGMLGAIVGNAVARAAGVEATPGIDWSRHAFQLVAAIIIVAAVDALYMATLGKRKHQRA
>NZ_LN997842.1|WP_059248567.1|2707802_2709071_+|tyrosine--tRNA-ligase
MTDIVDELKWRGLIALSTDEDALRKAFADGPVTFYCGFDPTAPSLHLGNLVQILTMRRIQEAGNRPLALVGGATGLIGDPKPTAERTLNAPEVVAGWVERLRAQIEPLLHFDGPNAAVMVNNLDWTQGLSAIEFLRDIGKHFRVNKMIAKEAVSRRLNSDAGISYTEFSYQILQGMDFLELYRRHGCTLQTGGSDQWGNLTSGTDLIHRVEPDAVVHALGTPLITKADGTKFGKTESGTVWLDPEMTTPYAFYQFWVNADDRDVSKFLRIFSFRSREEIEELERQTQERPQARAAQRALAEELTTLVHGAEQTAAVIAASRALFGQGELAELDERTLAAALSEVPHVQVTEPAPVVDLFAEVGLVASKSAARRTVKEGGAYVNNVKVTAEDAVPSAEDLIHGRWLVLRRGKKNLAAVEVTGA
>NZ_LN997842.1|WP_059248566.1|2706351_2707746_+|peptidase
MSARTNQPHEIVEQALALSRADGCVVIADEHSTANLRWAGNALTTNGVTRGRTLTVIATVDGKEGTASGVVSRSAVTAEELEPLVRAAEAAARGAGPAEDAQPLVTGVPESPDFTDAPAETSSAVFADFAPALGEAFARARAGGRELYGFANHELVSTYLGTSTGLRLRHDQPTGTLELNAKSPDRTRSAWAGRSTRDFKDVDPGALDAELAVRLGWAERRLDLPAGRYETLLPPTAVADLLIYQLWSASGRDAAEGRTVFSKPGGGTRVGEKLSELPLTLRSDPNEPGLECPPFLIAHSSGGDQSVFDNGLPAHATEWIGEGVLKHLTTTRHSAGLTGLPVAPVLGNLILDGGDDRSLEEMVAATERGLLLTCLWYIREVDPATLLLTGLTRDGVYLVENGEVTGQVNNFRFNESPVDLLGRATEAGRTEKTLPREWSDWFTRAAMPALRIPDFNMSSVSQGV
>NZ_LN997842.1|WP_059248565.1|2704831_2706355_+|TldD/PmbA-family-protein
MPHSIDEAFTALPLRALADAALARARALGAEHADFRFERVRSAAWRLRDARPAGSSDTTDLGYAVRVVHGGTWGFASGVDLTMDAAARVASQAVAMAKLSAQVIKAAGSDERVELADEPVHADRTWVSSYEIDPFSVPDEEKSALLAEWSSRLLAANGVDHVDASLLTVHENKFYADTAGTVTTQQRVRLHPQLTAVSVDESSGEFDSMRTLAPPAGRGWEYLTGTGWDWDAELARIPELLAEKMRAPSVEPGLYDLVIDPSNLWLTIHESIGHATELDRALGYEAAYAGTSFATFDQLGKLKYGSELMNVTGDRTAEHGLATIGYDDEGVEAQSWDLVKDGTLVGYQLDRRIARLTGFERSNGCAYADSPAHVPVQRMANVSLRPDPAGLSTEDLIGGVDRGIYVVGDRSWSIDMQRYNFQFTGQRFFKIENGRITGQLKDVAYQATTTDFWGSMAAVGGPQTYVLGGAFNCGKAQPGQVAAVSHGCPSALFKGVNILNTTQEAGR
>NZ_LN997842.1|WP_059248564.1|2703885_2704590_-|3-oxoacyl-[acyl-carrier-protein]-reductase
MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPAGFLAVKCDITDPEQVEQAYKEIEDQHGPVEVLIANAGVTKDQLLMRMSEDDFISVIDTNLTGTFRVVKRANRGMLRAKKGRVVLISSVVGLLGSAGQANYAASKAALVGFARSLARELGSRNITFNVVAPGFVDTDMTKVLSDEQRQNIVAQVPLGRYAQPEEIAATVRFLASDDASYITGAVIPVDGGLGMGH
>NZ_LN997842.1|WP_059248563.1|2703112_2703880_-|enoyl-[acyl-carrier-protein]-reductase-FabI
MSGILEGKRILVTGVLMESSIAFHVAKLAQEQGAEIILTAFPRPTLTERIAKKLPKPAKVIELDVTNEEHLARLADVVGEELGGLDGLVHSIGFAPQDALGGNFLNTPFESVATAMHVSAFSLKSLTMACLPLMQNGGSVVGLTFDAQYAWPQYDWMGPAKAALEATNRYMARDLGKQNIRCNLISAGPIGSMAAKSIPGFSELASVWDSRSPLEWDLKDPEPAGRGVVALLSDWFPKTTGEIIHVDGGLHAIGA
>NZ_LN997842.1|WP_059248562.1|2702603_2702954_-|hypothetical-protein
MRLSRSLAPVTVALALVLSLPYDALPHARVSDGKPPAPSRFGASCRTAVQGSHVEAYCHNPYVDTDRVRLHIECDRWWDIDTDSAPVDVEPALTVRLTGRCWKEVRSVWISHQKAR
>NZ_LN997842.1|WP_059248561.1|2701933_2702626_+|FadR-family-transcriptional-regulator
MPLSHPRRSALSEQVIAELRHQITSGEWPVGSRIPTEPELVEQLGVARNTVREAVRALAHNGLLDIRQGSGTYVVATSELAGVMHRRFADADPRHIAELRATLESAAAKLAAERRTEKDLKQLDTLLARREEVWESGDAEAFVTADATFHLAVVAASHNDVMTAMYADLGEVLRDWLRADVGAELTPETHMDHARLVDAIRAGDAEAASAEAGSYPFLCNPGRFTAPSGG
>NZ_LN997842.1|WP_079080917.1|2711095_2712115_-|GTP-3',8-cyclase-MoaA
MGDRQREGAHVLIDTYGRVATDLRVSLTDRCNLRCTYCMPEEGLQWLAKPDLLTDDEIVRLIDIAVRTLGIEEVRFTGGEPLLRPGLVGIVERVAALAPRPQMSLTTNGIGLRRTATALKAAGLDRVNVSLDTLRPDVFKTLTRRDRHKDVLEGLEAAREAGLTPVKVNSVLMPGLNDDEAPDLLAWAVEHDYELRFIEQMPLDAQHGWKREGMVTAGDILASLRTRFELSPEGAAERGSAPAERWLVDGGPHRVGVIASVTRPFCAACDRTRLTADGQIRTCLFATEETDLRAALRSGAPDEEIARIWRLAMWGKKAGAGLDDPSFVQPDRPMSAIGG
>NZ_LN997842.1|WP_059248571.1|2712270_2713926_-|cation-acetate-symporter
MTPVQHTLSVTGRASHTLLAAGEASEHRTLIITLFAVFVAATLVITVWAGRQTKDAADFYAGGRQFTGFQNGLAVSGDYMSAASFLGIAGAIALFGYDGFLYSIGFLVAWLVALLLVAEPLRNSGRYTMGDVLAYRMRQRPVRTAAGTSTIVVSIFYLLAQMAGAGVLVSLLLGITSDGGKIGIVALVGVLMIVYVTIGGMKGTTWVQMVKAVLLIAGALLLTFLVLLKFDFDVSELLGRAADNSGKGSAFLEPGLKYGATGTTKLDFLSLGIALVLGTAGLPHILIRFYTVPTAKAARKSVIWAIGLIGAFYLMTLALGFGAAALIKPGEIIASNKAGNTAAPLLALHLGGVDSNWGAILLATISAVAFATILAVVAGLTLASSSSFAHDIYANVIKRGQATDKQEVSAARWATVGIGAVSIVLGALARDLNVAGLVALAFAVAASANLPTILYSLFWKRFTTTGALWSIYGGLVTAVGLVLFSPVVSGKPTSMFPDVDFHWFPLENPGLISIPVGFLLGVVGTLLSKETPDAGKYAELEVRSLTGTGAH
>NZ_LN997842.1|WP_059248572.1|2713922_2714279_-|DUF485-domain-containing-protein
MATETPPPAKPQASLPSTEEFTEVQQSAEFGELRRAHRSFAFPLTIAFAAWYLLYVLLSNYAGDFMGTKVAGNINVALVLGLAQFVTTFLIAWWYARHAAAKLDPRAEAIKSRMEGGA
>NZ_LN997842.1|WP_059248573.1|2714565_2716095_+|peptidase-S8
MAHLRSRRRLALAVPVVLSLTASLGFLPSVASAAPAAGTVARAADGPNLAYVVNTRTDRRTIESVRREITRNGGTIVAGYDRIGVIVAHSANPDFGARMRAVRGVDSAGATRTAPLSAAGTTDEGAAQVLSRAEQARLTANAAAGEEPLEADQWDLRAIGADRAARINPGSRNVTVGVIDTGVDDTHPDIAPNFSASQSANCVSGKADTTYGAWRPVDADHYHGTHVAGEIAAARNGVGVAGVAPGVKVASITVSQPDEKSLFYPESVVCAFVFAADHGIEITNNSYYVDPWLYNCMDDPDQRAIVDAVNRAQLYAQRKGTLNVASAGNSNHDLDADAIVDDSSPDDSTTPQTRTIDPHECFDIPTQLPGVVTVSAVGVKGAKSYYSSYGRGVVDVAGPGGDRYQIPDTPSKNGRILSTMPNNQYGFLQGTSMASPHVAAVAALLKSARPHATPAQLQALLKAQADNPGCPTEPYDGNGDGVVDATCVGGKRVNGFFGFGVVNALRAVK
>NZ_LN997842.1|WP_059248574.1|2716184_2717588_+|CoA-transferase
MTAIKDAWGALGGRPDLVSRVSAVVCPDVLDARLPVRELARACVGACALAAAELGARRAGLAEVPAVTVDDGAVAAAFHSERLLRVDGRAPVSFAPLSRFWRAAEGWVRTHANYPHHRDRLLGALGLPADASAEAVAGRLAERSALETEEAVYRAGGLAVALRTPAQWQAHPQAAEVAARPLVERARLDAAPARVFAPPAPAAPALLPAAGLRVLDLTRVLAGPVATRTLALLGADVLRVDAPWLPELPDQHADTGFGKRSATLDLAAGRDTFEKLLSTADVVVTGYRPGTLDRFGLAPHALAERRPGLVVAQVSAWGGYGPWGGRRGFDSLVQVATGIAVTEGTAERPGALPAQALDHGTGYLLAAAVLRALTEQSYAGGSRLVRLALARTARWLTHGIRPAPNEGTPAPASAEGTPAPAPGAWLTETDGPLGRLRHVRPPVSFTDGPTDWPRPPAPWGSDPAEWR
>NZ_LN997842.1|WP_059248575.1|2717647_2718358_-|VIT-family-protein
MTEPTHDEAHGGALGSRLNWLRAAVLGANDGIVSTAGLVVGVAGATESRSALLTAGLAGLLAGSMSMAAGEYVSVSTQRDSEMAALALERRELREQPEAELRELTELLAARGLSREVAREAAEQLTARDALKAHARVELGIDPDELTNPWNAAWASFLSFTVGALLPLLAIVLPPPGWRLAVTVGSVLAALVLTGWTSARLGAAAPPRAVVRNVAGGALAMAVTYGAGSLLGAVGV
>NZ_LN997842.1|WP_059254885.1|2718838_2719822_+|DEDDh-family-exonuclease
MLEDRATAVSSPTQWPAAYPKGYAVVDVETTGLARDDRIISAAVYRLDALGEVEDHWYTLVNPERDPGPVWIHGLTSEVLDGAPLFGDIAEEFAARLDGRVLVAHNAVFDWQMIAREYARVRREAPVRQRLCTIALSKELGLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFRPSLRAAAASGVRLPLLECRPLTEWSDRPVPRQATGGYGGYRSSSWRPSRKRPACPYPNPGRYEEGKRLKQGMRVAFSGDTSTERELLEDRAVEAGLHVATSISRLTSLLVTNDPDSGTSKTVKARQYGTPIVDEAAFGQLLGDVEPADA
>NZ_LN997842.1|WP_059248576.1|2719920_2720154_+|hypothetical-protein
MATCEVCGNDYGMTFEVHAQGAVHVFDCFSCAIHRMAPICEHCRVQIIGQGVEVEGHWYCGAHCARQEGRTGIVDRV
>NZ_LN997842.1|WP_059248577.1|2720203_2721001_+|SURF1-family-protein
MHRYRFLLSRQWVILTLVAIALIPTMIELGFWQQHRYEERTARNDLVSAALHAEPVPVERLTSPGHEVTRAEKYRTVTATGTFDPAREVVVRRRTNADDEVGFHVLTPFVLDDGKVLLVNRGWIPANGSQTAFPKIPAPPAGRTTVTGRLMADETTAASGIKNVKGLPDRQIMLINSAEEARRLGAEVLGGYIQQTAPEPKGGSPQQISDPGSEDAPLNYAYMIQWWLFAAAVPVGWWFLVRREVRDREETAAERQPEESAPAAV
>NZ_LN997842.1|WP_059248578.1|2721131_2722916_+|glycoside-hydrolase-family-15-protein
MNARIEDYALIGDKQTAALVGKDGSIDWLCLPRFDSGSCFARLLGDEDHGHWRIAPKGADVCTRRAYRSDTLVLDTEWETADGAVRVTDLMPQRERAPDVVRIVEGVSGRVTVRSTLRLRFDYGSITPWVRRSDGHRVAVAGPDSAWLRAEPDVPTWGEDYGTHAEFTLTEGERVAFVLTWHPSHEKRPPLIDPYEALESSVTDWRRWARRCRYDGPYRDAVVRSLITLKALTYAPTGGIVAAATTSLPEQPGGVRNWDYRYCWLRDSTLTLGALLSMGFQEEAEAWRDWLLRAVAGDPADLQIMYGVAGERRLPETELPWLPGFAGACPVRTGNGAVDQLQLDVYGEVMDTLSLARASGLPTKPHMWALQRSLMGFLETAWRQPDEGLWEVRGGRRHFVHSKVMVWVAADRAVKTLERHPELHGDLEGWRDLRDAVHREVCEKGFDPERNTFTQYYGSRELDAALLLIPRVGFLPPDDPRVVGTVDAIRDDLGHGGFLRRYDTEDSVVDGLPSGEGAFLACSFWLADALYLTGRTKEAHELFDRLVGLCNDVGLLAEEYDPVKGCQLGNFPQAFSHIGLVNTALTLFGGDRAG

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Crispr_ID: NZ_LN997842_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN997842_5

2804516-2804652

Orphan

Consensus_repeat	Method
GCCATCACCCGCCGCGACCGGAACCCACCCCGACCAGCACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN997842_5

>merge|NZ_LN997842|5|2804516-2804652|CRISPRCasFinder
GCCATCACCCGCCGCGACCGGAACCCACCCCGACCAGCACCCGCCTCGGCCGACACCCTCTCCGGCCCACGCCCACCCCGGTGCCGCCCACCTCAGCCATCACCCGCCGCGACCGGAACCCACCCCGACCAGCACCC

>NZ_LN997842|5|5|2804516-2804652|CRISPRCasFinder
GCCATCACCCGCCGCGACCGGAACCCACCCCGACCAGCACCC	GCCTCGGCCGACACCCTCTCCGGCCCACGCCCACCCCGGTGCCGCCCACCTCA
GCCATCACCCGCCGCGACCGGAACCCACCCCGACCAGCACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN997842.1\|WP_059248639.1\|2797376_2798312_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_LN997842.1\|WP_059248648.1\|2805979_2807143_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059248636.1\|2794973_2796128_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_LN997842.1\|WP_059248644.1\|2802685_2802967_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227315
NZ_LN997842.1\|WP_059248653.1\|2811636_2812575_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_LN997842.1\|WP_059248646.1\|2803422_2804010_-\|TIGR03086-family-protein	unknown	unknown	gnl\|CDD\|274424
NZ_LN997842.1\|WP_059248645.1\|2803004_2803310_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225209
NZ_LN997842.1\|WP_059248656.1\|2814463_2815651_+\|stress-induced-protein	unknown	unknown	gnl\|CDD\|225192
NZ_LN997842.1\|WP_059248638.1\|2796495_2797380_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_LN997842.1\|WP_059248643.1\|2801876_2802638_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293802
NZ_LN997842.1\|WP_059248651.1\|2809388_2810159_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_LN997842.1\|WP_059248641.1\|2800190_2801102_-\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
NZ_LN997842.1\|WP_059248642.1\|2801098_2801755_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_LN997842.1\|WP_059248652.1\|2810269_2811640_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_LN997842.1\|WP_059248649.1\|2807139_2808081_-\|5-dehydro-4-deoxyglucarate-dehydratase	unknown	unknown	gnl\|CDD\|235141
NZ_LN997842.1\|WP_059248650.1\|2808304_2809114_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_LN997842.1\|WP_059248655.1\|2813392_2814382_+\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176196
NZ_LN997842.1\|WP_059248640.1\|2798460_2800194_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|235708
NZ_LN997842.1\|WP_059248654.1\|2812571_2813396_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_LN997842.1\|WP_059248647.1\|2804810_2806043_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863

Protein	Function_ID	Function_description	E-value
NZ_LN997842.1\|WP_059248639.1\|2797376_2798312_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	3.55823e-82
NZ_LN997842.1\|WP_059248653.1\|2811636_2812575_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.69482e-73
NZ_LN997842.1\|WP_059248636.1\|2794973_2796128_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	6.29935e-29
NZ_LN997842.1\|WP_059248644.1\|2802685_2802967_-\|hypothetical-protein	gnl\|CDD\|227315	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].	0.00595786
NZ_LN997842.1\|WP_059248646.1\|2803422_2804010_-\|TIGR03086-family-protein	gnl\|CDD\|274424	TIGR03086, TIGR03086, TIGR03086 family protein. This family, like pfam07398 and TIGRFAMs family TIGR030834, belongs to the larger set of probable enzymes defined in family TIGR03083. Members are found primarily in the Actinobacteria (Mycobacterium, Streptomyces, etc.). The family is uncharacterized.	1.6929e-43
NZ_LN997842.1\|WP_059248645.1\|2803004_2803310_-\|hypothetical-protein	gnl\|CDD\|225209	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only].	0.00683746
NZ_LN997842.1\|WP_059248656.1\|2814463_2815651_+\|stress-induced-protein	gnl\|CDD\|225192	COG2310, TerZ, Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 [Signal transduction mechanisms].	1.43197e-48
NZ_LN997842.1\|WP_059248638.1\|2796495_2797380_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.13215e-72
NZ_LN997842.1\|WP_059248643.1\|2801876_2802638_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293802	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme. Only the short form exists in bacteria. Members of this bacterial subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	3.42625e-66
NZ_LN997842.1\|WP_059248651.1\|2809388_2810159_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	4.97256e-73
NZ_LN997842.1\|WP_059248641.1\|2800190_2801102_-\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	5.79491e-73
NZ_LN997842.1\|WP_059248642.1\|2801098_2801755_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	4.53257e-40
NZ_LN997842.1\|WP_059248652.1\|2810269_2811640_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.43021e-65
NZ_LN997842.1\|WP_059248649.1\|2807139_2808081_-\|5-dehydro-4-deoxyglucarate-dehydratase	gnl\|CDD\|235141	PRK03620, PRK03620, 5-dehydro-4-deoxyglucarate dehydratase; Provisional.	9.97011e-158
NZ_LN997842.1\|WP_059248650.1\|2808304_2809114_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	2.98437e-33
NZ_LN997842.1\|WP_059248655.1\|2813392_2814382_+\|alcohol-dehydrogenase	gnl\|CDD\|176196	cd08234, threonine_DH_like, L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.	2.53202e-168
NZ_LN997842.1\|WP_059248640.1\|2798460_2800194_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|235708	PRK06131, PRK06131, dihydroxy-acid dehydratase; Validated.	0
NZ_LN997842.1\|WP_059248654.1\|2812571_2813396_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	7.95849e-58
NZ_LN997842.1\|WP_059248647.1\|2804810_2806043_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.72377e-43

>NZ_LN997842.1|WP_059248646.1|2803422_2804010_-|TIGR03086-family-protein
MTMVDLGPQTTILARLARSVADEQLTAATPCPGLAVRNLLGHLLMLSVAFRDAARKSLGPTTDTSPTAAVPDLGPGWREELPKALDELADAWRDPAAWTGDTRAGGVDLPGAVAGAVVADELVIHGWDLARATGQDYAPDPAALDAAFGFLLAAADDPDRDEGLFGPVVPVPPDASRLDRAVGLSGRDPGWPRRA
>NZ_LN997842.1|WP_059248645.1|2803004_2803310_-|hypothetical-protein
MREHYVWVTTRRLQPGTLEDFERAWRPEPAPQGLHRAYAYWSEDGQEVTGVSFWDSREACDAWRASEQEARRREAMAPYVDEEREGFYRGRELGLPGGAGG
>NZ_LN997842.1|WP_059248644.1|2802685_2802967_-|hypothetical-protein
MSETVVVYELEQPVPARTPAAGPPAAERLPRRVHAAPAAPGRPGAAGPRTLCGKDTFAMAKAPRTPSGRPGEPWYPAGYASLVCPDCDAVMEI
>NZ_LN997842.1|WP_059248643.1|2801876_2802638_-|MBL-fold-metallo-hydrolase
MPLTLTVLGTASPHPGPDRPCSGYLLSGGGAEVWVDAGPGTFAALQRHTDPARLTAIWISHLHADHSADLLSAAYAFAFGGMTPPAPVPVYAPEGCARRLAGFLGRPDVDFLKSVFDFRDLYDGHDVRHWNLRLTARAVAHDTEGYGLRAACQGSVFAYSGDSGPCAALTELAARADLFLCEADIDAHPGSEHSRQVHLTPEDAGRIARDARVRELLVTHVGPTLTRESATARAAAVSGRPTSAAVEGRVHSV
>NZ_LN997842.1|WP_059248642.1|2801098_2801755_-|GntR-family-transcriptional-regulator
MTSVPTPIPSRTQYVLDAIKHRILTGQLTPGQALVETELAAQFGVSKTPVREALKTLAGTGLVVMSQYKGVTVRMVDADMAREVYDVRLLLEPEALRRAVARGAPLDAARSALTRADTATDTAERSLANRDFHRALYLPCGNPLLGRMLDEVRDQAALVSAVAWSADPSWEREAAEHREILRLALEGDADGAANALHAHIASFVRRAFPEPLPEEGQT
>NZ_LN997842.1|WP_059248641.1|2800190_2801102_-|dihydrodipicolinate-synthase-family-protein
MSSVTFERQRAALAGVVAIPVTPFAADGSVDTGTHRALLRRLLDGGITTLTPNGNTGEFYALTPEERRLVTELTVEEAGDRATLLVGVGHDLPTAIASARHARDLGAAMVMVHQPVHPYVSAAGWVDYHRAIAEAVPELGVVPYLRNAQLPGARLAELADHCPNVVGVKYAVPDAARFAAFARDAGLDRFVWVAGLAEPYAPSYFSAGATGFTSGLVNVAPAVSLNMIEALRSGDYPAAMKVWEQIRRFEELRAAHGNANNVTVVKEALAALGLCRRDVRPPSRPLPEDERAEVAAITAGWSL
>NZ_LN997842.1|WP_059248640.1|2798460_2800194_-|dihydroxy-acid-dehydratase
MNAPRKRPEELRSHQWYGTDGLRSFSHRARTRQLGYLPEEHLGKPVVAILNTWSDINPCHVHLRDRAQAVKRGVWQAGGFPLEFPVATLSETFQKPTPMLYRNLLAMETEELLRSYPVDGAVLMGGCDKSTPALLMGAASVDLPTVFVPAGPMLPGHWRGEVLGSGTDMWKYWDDKRAGLIGDCEMAELESGLARSPGHCMTMGTASTLTAAAEALGVTVPGASSIPAVDSGHDRMAARSGMRIVEQVHKGRRLSALLTREAFEDAVTTVLGLGGSTNAVIHLIAMAGRAGVRLTLDDFDRIARTVPVLADVRPGGQRYLMEDFHFAGGLPGFLSRITDLLHLDRPTVSYDTLREQLTGAQVHNDDVIRTRDNPVASEGGVAVLRGNLCPDGAVIKHIAAEPRLLRHTGPAVVFDDYRTMQRTINDPSLGITADSVLVLRNAGPKGGPGMPEYGMLPIPDHLLKQGVRDMVRISDARMSGTSYGACVLHVAPESYIGGPLALVRTGDLITLDVDARSLHLHVDDAELDRRRAAWTAPPARYERGYGALYNEQITQADTGCDFAFLARPGTVPDPYAG
>NZ_LN997842.1|WP_059248639.1|2797376_2798312_-|sugar-ABC-transporter-permease
MAQAAAVAKPPAPPRRRRASATPRRLPYLLIAPAALLMLGFIAYPVLSVFYYSLRNHNPTKPWRNGFAGLDNFTRAFAHDPQFWDTLTFSAQWVVVEVGLQLLFGLALALIVNQTFVGRALGRALVFSPWAVSGVLTSAIWVLLYNSQTGITRYLADAGLGSYGTSWLSDTSTVFPAAIVADLWRGVPFFAILILADLQSVSRDLYEAAEVDGASRLQQFRHITLPHLKDAIVLSTLLRAVWEFNNVDLLYTLTGGGPAGETTTLPLYIANKSVDAHDFGYASALTTVAFVILLFCSIAYLRLSKFGGDSK
>NZ_LN997842.1|WP_059248638.1|2796495_2797380_-|carbohydrate-ABC-transporter-permease
MITEIAPAPERTAAEPARPGRRRRAWDEVPRWQIYLPLTVYLLFTLIPFYWILLFALRPAGSTSLVPWPMTFEHFEKVWTERSFGTYFANSVYVGLATLVLTTVVALAGGYALARFDFRLKRGFMLALLCSQFVPGALLLVPLFQIFAELRMINSLGSVIIAETVFQLPLSMILISGFIRNVPYSLEEAAWVDGCNRLTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSDQGKQTIPVGLNTLMSADSVDLGALAAGGIIAAVPVVIVFAFIQKWLITGFSAGAVKG
>NZ_LN997842.1|WP_059248636.1|2794973_2796128_-|Gfo/Idh/MocA-family-oxidoreductase
MTVPVVLAGARGHGRWHLDNIRRLAATGRVRLAGICELTPLTEAEIPDGLGTPEQSADIGALLDATGARIAVICTPIPTHTDLALTAAARGVHLLLEKPPAPSYAEFRRMADGVERARVACQIGFQSLGSHAVPAIRRLLAEGAIGEVTGVGGAGAWARDEAYYRRAPWAGRRRLNGVDVVDGVLTNPLAHAVATGLALLGATRAEDVTGIETELLRANAIESDDTSCVRVRTPHGPVTVAATLCAEHPGEPYLVVHGSSGRITFWYKQDRVLLQRTGHGPEETEHGRTDLLENLLEHLDGGTELLVPPDGTGAFMRVVEAVRTAPDPAPLPEHAWRRLPAEHRRIVPGIDGLVAAAAGTLSLYSELGAPWAPPASLPNEVTIR
>NZ_LN997842.1|WP_059248647.1|2804810_2806043_+|MFS-transporter
MTTSLTLLRVLRDRDAGLYLTGLVVSGFGTSSLWLASGVWVKELTGSDGLAALCMLAMWAPTLAGPALGTLADRLPRRPLLIALNLGLAALLLTLFAVDSAARLWLLFTVLFLYGTAGVVHDAAESALVSSVVGPDLLGDFNGLRTAVTEGMKLVAPLTGAGLYTVYGGPAVACLDAATFVLAAGLCALLRVREQRPARSGEGWRRQTAQGVRHLWGHPVLRPLVRAGGTTMLLTALASTTVYAVVDRLGHSPAYTGVLYAAQGAGSVAAGLLAGPALRRLGGRRFAAAGIALTGAAVVARAVPWDPVALASAAAGGLGLPCVLIAALTAVQRETPGPLLGRVTATAHTLVFTPNVLGLAAGAGLVELAGPGLLLPLYGLALLLTALPLAQRAASASRTAARSPSDANPA
>NZ_LN997842.1|WP_059248648.1|2805979_2807143_-|hypothetical-protein
MRTSAFVYPWDVTGDPEAPARIAGLGVEQVTLAAAYHSTRALTPRHPRHRIVTAEYAAVLYPPGDRWAGRGLRPYPAGRWAPGDAYGEAAEALAAAGLEVHTWVVLAHNSRLGAEHPDTSVVNAYGDRYPWAPCIAQPATRAYLVDLAAEAAVRPGARGTELESLGWYGLQHLHAHDKTAGVGLGDAGQYLMSLCFCPSCRAGYGAHGLAADALAAAVREVLEPLWRGAADDEGWPTVEKLLGEDTATATRAWRENTARTLQEEAVAAVRAAAPDGFQVLLHADPVPYHCGANAGVDPAHILSVADGVVVPCTGGTALLAPFAGQAREGAVLAANLTVVSGMGGRPGTLAADAARARADGATELRLYHAGLASDGDLAAVREALAAR
>NZ_LN997842.1|WP_059248649.1|2807139_2808081_-|5-dehydro-4-deoxyglucarate-dehydratase
MTPAPLAARLRDPSGPLFFPVTAYGPGGSLDLDVYRTHVRRGVAAGAAAVFAACGTGEFHALLPEEFEACVRVAVEAAEGRVPVVAGAGYGTALAVRYARLAEDAGADGILAMPPYLVLAGQDGLLRHYREIAAATALPVIVYQRDNAVFTPPTVVELARTDGVIGLKDGLGDLDLMQRVVSAVRTEAPGDFLYFNGLPTAEQTQLAYRALGITLYSSAVFCFAPEIALAFHRALRTGDLPAAHRLLDGFYRPFVELRAQGRGYAVSLVKAGVRLRGLDVGEVRPPLHEPAEEHVKQLAQLIERGSALLEEDA
>NZ_LN997842.1|WP_059248650.1|2808304_2809114_+|NAD(P)-dependent-oxidoreductase
MPAPRTILLTGAAGGLGTLMRSLLPEYGYTLRLFDVRPVEDAPDAITADLTDTEALREAVRGVDAVLHLAGISLEAPFEKILRSNIEGTYNLYEAARREGVPRIVFASSNHVVGFTPAPRAGEPPIPIDTPRRPDTFYGLSKSFGEDLAQLYWDRHGLETVSVRIGSCFPEPTSVRMLSVWMSPADGARLFHAALTAEEVGHTVVYGSSANTRLWWDLTTARALGYEPQDDSEPYAGKLIAEQGELDPENPAHARLGGHFVNDPPIWPY
>NZ_LN997842.1|WP_059248651.1|2809388_2810159_+|DeoR/GlpR-transcriptional-regulator
MTPRTAEERQREIVRAARATGSVDVTALAAALGVAKETIRRDLRALEDHGLVRRTHGGAYPVESAGFETTLAFRATSHVPEKRRIAAAAAELLGDAETVFVDEGFTPQLIAEALPGDRPLTVVTASLPVAGALAEAEHVSVLLLGGRVRPGTLATVDHWTTKMLAGFVIDLAYIGANGISREYGLTTPDPAVSEVKAQAVRAARRTVFAGVHTKFGAVSFCRFAEIGALEAIVTSTLLPSAEAHRYSLLGPQVIRV
>NZ_LN997842.1|WP_059248652.1|2810269_2811640_+|sugar-ABC-transporter-substrate-binding-protein
MRTPSRRRPRATLALAAAGTLLAPLLSGCWAGAGGTGSGGDSINVLMVNNPQMTELQKLTAAHFTKDTGIKVNFTVLPENDVRDKISQDFANQAGQYDVATLSNYEIPIYARNGWLHEMDTYVAKDPAYDEQDVLKPMRQSLTGDDGKLYGQPFYGESSFLMYRKDVFAEKGLTMPARPTWQQVADLAAKADGARPGMRGICLRGLPGWGELMAPLTTVVNTFGGTWFDKDWKARLDSPAFTKATKFYVDLVRAHGESGAAQSGFAECLNNMTQGKVAMWYDATSAAGLLEAAESPVKGRLGYAPAPVERTKSSGWLYTWAWGIQQASRNPDKAWKFVSWASGKGYERLVGETSGWSNVPAGKRASTYTNADYRASAAAFQEMTKEAIESARPNDPGVQPRPAPGIQFVGIPEFTDLGTRVSREISAAIAGRQSVDAALRKSQALAEKISEEYEGR
>NZ_LN997842.1|WP_059248653.1|2811636_2812575_+|sugar-ABC-transporter-permease
MTATTTAPLAATPARTVRQPSARLRAWATRAPLLPALVFMIVVTQLPFVATLVISFFDWNALYPKARHFTGLDNYREVLTDADLRHSVWTTVLLTAGVVLASLVLGLVLALLLDRRFRGRGIVRTLLIAPFLVVPVAAALLWKHVLYNPEYGLFNGLLHYVGGPQPDWVSRTPLLAVEASLVWQWTPFMMLILLAGLQSRDQQQIEAARVDGASDWQIFRHLTLPHLRRYLELGALLGSIYIVQNFDAVFTITSGGLGTANLPYTVYQSFYQAHENGLASAAGVLVVIGSIVIATFALRVVSSLFREEVSRA
>NZ_LN997842.1|WP_059248654.1|2812571_2813396_+|carbohydrate-ABC-transporter-permease
MSVLRRGGLGLLAWLAGIVFFLPIAWMALTSFHSEADAATNPPSFTAALTLDGYREFFGSGGGASPWPALINSTVASVASTLLVLLLALPAAYALSIRPVKKWTDVLFFFLSTKMLPAVAGLLPIYLFAKNAQLLDNIWLLVVLYTSMNLPIAVWMMQSFLAEVPVAVIEAARVDGARLPVILARVVAPIALPGIAATALICFIFSWNELLFARVLTGVVAETAPVFLTGFITSQGLFLAKVCAASLVISLPVLAAGFAAQDKLVQGLSLGAVK
>NZ_LN997842.1|WP_059248655.1|2813392_2814382_+|alcohol-dehydrogenase
MKAAVIESVGRAVVTEVPDPTPGPREVVVEVAACGLCGTDLHILQGEFAPKLPIVPGHEFAGEVVGVGTQVTEVAVGDRVAVDPSLYCYECRYCRTGHNNLCERWAAIGVTTAGGAARYALAPVANCVKLPEHVRTEDAALVEPLSCAVRGYDVLRSRLGAHVLIYGSGTMGLMMLELAKRTGAARVDVVDVNPARLETARLLGVSAAAAHADELDRPQGWDVVVDATGNAAAIQDGLGRVAKAGTFLQFGVADYATRVTIDPYRIYNQEITITGSMAVLHSFERAAELFANGVLDPAVFISDRIPLERYPQALEQFAAGVGRKIVVVP
>NZ_LN997842.1|WP_059248656.1|2814463_2815651_+|stress-induced-protein
MTPGSNIPLSAARVTVDVSAPVRLDVSGLLLTGDGKVRSDDDFIFYNQPSGPGVTYRSGGGTAPDAVTVDTAAVPPEIEKIVVTASPDAAGQTFQGIEPTATIRDADGGAVLATFTPPQLGTETALVVVEIYRRGGQWKARAVGQGYANGLAGIATDFGVTVEEPAAAPAAPAPAPVAPPQPATAPAAPPRPSAPPPAPAPGAGKINLDKGRVSLQKNQTVSLVKGGRPLLSQVKMGLGWEPAFRGKDIDLDASVIAYGPQRNHIDSCYFGKLTILKGAVRHSGDNLTGEGGGDDEVITVDLGRLPQEVTGLVFTVNSFSGQKFTEVAKAYCRLLDATTGEELVRFDLTGAEPQTGVMMAKLIRQFSGEWDMTAMGDFVKARTVRNMVEPGARAL

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Crispr_ID: NZ_LN997842_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN997842_6

3321778-3321873

Orphan

Consensus_repeat	Method
CCACCTGGACCTGCGCAACAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN997842_6

>merge|NZ_LN997842|6|3321778-3321873|CRISPRCasFinder
CACCCTCGACCTCGGGCACAACCGGCTGCCGGAACTCCCGCCGGATCTCGGGGAACTGCCCTCGCTCGACCGCTATCTGTACCTGAGCGACAACGC

>NZ_LN997842|6|6|3321778-3321873|CRISPRCasFinder
CACCCTCGACCTCGGGCACAACC	GGCTGCCGGAACTCCCGCCGGATCTCGGGGAACTGCCCTCGCTCGACCG
CTATCTGTACCTGAGCGACAACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN997842.1\|WP_079080944.1\|3312991_3313480_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|366034
NZ_LN997842.1\|WP_079080945.1\|3317858_3318275_+\|DUF190-domain-containing-protein	unknown	unknown	gnl\|CDD\|376875
NZ_LN997842.1\|WP_059249046.1\|3317316_3317919_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_LN997842.1\|WP_059249058.1\|3335140_3336853_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|273787
NZ_LN997842.1\|WP_107118074.1\|3331704_3333360_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173838
NZ_LN997842.1\|WP_059249053.1\|3326985_3328221_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_LN997842.1\|WP_059249051.1\|3325322_3326336_+\|ribonucleoside-diphosphate-reductase	unknown	unknown	gnl\|CDD\|153108
NZ_LN997842.1\|WP_059249052.1\|3326422_3326980_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NZ_LN997842.1\|WP_059249055.1\|3329506_3329782_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|376348
NZ_LN997842.1\|WP_059249043.1\|3314388_3314856_-\|CYTH-domain-containing-protein	unknown	unknown	gnl\|CDD\|143626
NZ_LN997842.1\|WP_059249057.1\|3333386_3335144_-\|fatty-acyl-AMP-ligase	unknown	unknown	gnl\|CDD\|341254
NZ_LN997842.1\|WP_094374136.1\|3318282_3319053_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059249042.1\|3313495_3314392_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NZ_LN997842.1\|WP_059249048.1\|3319086_3319917_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_079081310.1\|3329800_3331381_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173838
NZ_LN997842.1\|WP_094375274.1\|3315149_3315749_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|184971
NZ_LN997842.1\|WP_059249054.1\|3328261_3329455_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_LN997842.1\|WP_059249050.1\|3322953_3325323_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|274170
NZ_LN997842.1\|WP_059249049.1\|3319920_3321318_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_LN997842.1\|WP_059249045.1\|3315833_3317276_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551

Protein	Function_ID	Function_description	E-value
NZ_LN997842.1\|WP_079080944.1\|3312991_3313480_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|366034	pfam00334, NDK, Nucleoside diphosphate kinase.	1.53451e-51
NZ_LN997842.1\|WP_079080945.1\|3317858_3318275_+\|DUF190-domain-containing-protein	gnl\|CDD\|376875	pfam02641, DUF190, Uncharacterized ACR, COG1993.	1.08646e-19
NZ_LN997842.1\|WP_059249046.1\|3317316_3317919_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	4.57306e-33
NZ_LN997842.1\|WP_059249058.1\|3335140_3336853_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|273787	TIGR01746, L-aminoadipate-semialdehyde_dehydrogenase, thioester reductase domain. This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine, as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP\|466833 from M. leprae, GP\|435954 from Anabaena and OMNI\|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI\|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.	1.09435e-87
NZ_LN997842.1\|WP_059249057.1\|3333386_3335144_-\|fatty-acyl-AMP-ligase	gnl\|CDD\|341254	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin.	0
NZ_LN997842.1\|WP_059249053.1\|3326985_3328221_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	1.39277e-97
NZ_LN997842.1\|WP_059249049.1\|3319920_3321318_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.22042e-38
NZ_LN997842.1\|WP_059249055.1\|3329506_3329782_-\|acyl-carrier-protein	gnl\|CDD\|376348	pfam00550, PP-binding, Phosphopantetheine attachment site. A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of the anguibactin system regulator AngR has the attachment serine replaced by an alanine.	3.33823e-13
NZ_LN997842.1\|WP_059249051.1\|3325322_3326336_+\|ribonucleoside-diphosphate-reductase	gnl\|CDD\|153108	cd01049, RNRR2, Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-helical bundle; some have 2 addition beta strands. Yeast is unique in that it assembles both homodimers and heterodimers of RNRR2. The yeast heterodimer, Y2Y4, contains R2 (Y2) and a R2 homolog (Y4) that lacks the diiron center and is proposed to only assist in cofactor assembly, and perhaps stabilize R1 (Y1) in its active conformation.	1.41982e-107
NZ_LN997842.1\|WP_059249043.1\|3314388_3314856_-\|CYTH-domain-containing-protein	gnl\|CDD\|143626	cd07761, CYTH-like_CthTTM-like, Clostridium thermocellum (Cth)TTM and similar proteins, a subgroup of the CYTH-like superfamily. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. Members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily have a unique active site located within an eight-stranded beta barrel.	1.50161e-64
NZ_LN997842.1\|WP_059249042.1\|3313495_3314392_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	1.87664e-65
NZ_LN997842.1\|WP_107118074.1\|3331704_3333360_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173838	cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC).	6.96137e-51
NZ_LN997842.1\|WP_079081310.1\|3329800_3331381_-\|hypothetical-protein	gnl\|CDD\|173838	cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC).	3.6794e-51
NZ_LN997842.1\|WP_094375274.1\|3315149_3315749_+\|NUDIX-domain-containing-protein	gnl\|CDD\|184971	PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional.	1.25262e-41
NZ_LN997842.1\|WP_059249054.1\|3328261_3329455_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.85926e-78
NZ_LN997842.1\|WP_059249050.1\|3322953_3325323_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|274170	TIGR02506, Ribonucleoside-diphosphate_reductase_large_subunit, ribonucleoside-diphosphate reductase, alpha subunit. This model represents the alpha (large) chain of the class I ribonucleotide reductase (RNR). RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Class I RNR's generate the required radical (on tyrosine) via a "non-heme" iron cofactor which resides in the beta (small) subunit. The alpha subunit contains the catalytic and allosteric regulatory sites. The mechanism of this enzyme requires molecular oxygen. E. Coli contains two versions of this enzyme which are regulated independently (NrdAB and NrdEF, where NrdA and NrdE are the large chains). Most organisms contain only one, but the application of the gene symbols NrdA and NrdE are somewhat arbitrary. This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	0
NZ_LN997842.1\|WP_059249052.1\|3326422_3326980_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	2.7969e-32
NZ_LN997842.1\|WP_059249045.1\|3315833_3317276_+\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	3.30377e-33

>NZ_LN997842.1|WP_059249049.1|3319920_3321318_+|MFS-transporter
MPSPEADALESARRADLPTPPAPAGALALLATAQLLIGLDYSIVYVALPVIDTALGFSAESLQWVVSAYAVFFAGLLLVCGRLVDTFGARGVFLGAAGVLAAASLGAGLCAGSAQLIVFRALQGAGAAALAPATLSLLTQIFPPGPRQTRALTVWSTTGAAGLAVGVLGGGVLTQLTSWRWIFLAVAVVAAAMAVAGLRLPRPGRPGAFRADLSLGRALLATAAVLLVVLWLTRVTGGGWGRPAEYLPPAVAAVCAAGFVRLDRRSGNPMVPRALLRRRPFVVACAAAALFMASFGAEFYVVTLLMHDVHHYSALMAGVAFLPLAATAPLGSAVTGRLTRTFGALPTLVAGFAIGAAGVALLLPMTSGGPYALTVLPGLVVSGVGQGIAYTAAYGLGTSVLDEQQGVGSALITTVQYFGGSVGLAVLVSVMGETPSGASARAGIALLAAVALAAVVVLPVAHRKH
>NZ_LN997842.1|WP_059249048.1|3319086_3319917_+|hypothetical-protein
MINPQVPTADPIYARTGDFAVFNQLGLKLAFPNDVSKEDYYAWLDTMHEKVGTMVKGAEIAEKSYARKEPRLNTGVYYDTDDYRLLRAGAVLRTTCNIKTHAFCAFKLSEDEHNVRRDHRYSFDGEDKLTIQQAPTSPEAQAAVKRLLARTDIEHPGIHLREKFGITGDDLSPAVCLRQYRHPFFVWIDKKDALRCSMDRVRVHSMRRPDGEEHEVPFSEIELPVYPHLDEEMANDPRLIQLIEALAESLRSWFGIEPISESKYQRAAQVLGLSTS
>NZ_LN997842.1|WP_094374136.1|3318282_3319053_+|hypothetical-protein
MTSVVAQETPTTAPLSLRQVADTLDRLPVDRSEPTIAANLDLVHQLGQPGPMTGLLREILADDKALAAIAARSYPHTNHFDKIVLVDSGTALGYRLTLHLWNPPYSDAEAEDEQIHDHRFSFWSHVVLGTLTSQNFVRDATGVQFGEYQYIPEKINDVATVGNYYVNVGTSPLLEADRPAVPQGHSYSLDFAQIHRVLLPRTSPTCTLVLRGPRQKNYASVFSNSQKYDPSANEMFSPDQLAEKLRIILGHIAASA
>NZ_LN997842.1|WP_079080945.1|3317858_3318275_+|DUF190-domain-containing-protein
MADSPPQPPGPPSASPAHLVGIPRLRPACRATLTLRGGTLWRHRPLYAELVRRAKEQGLAGAHVLHAIEGFSPGGPVVHHRTFGLRDRLPLCVVIVDDRPAVDRFLGSLDPRMQVDSIVLDRVYQLTPHDGTPRTDKE
>NZ_LN997842.1|WP_059249046.1|3317316_3317919_+|histidine-phosphatase-family-protein
MRICLVRHGQSLWQLAPSRDWDTRLSDLGHRQAAALATWWAEHELLDATTRLDVGVLSASPLKRAQETAGHLADALHLPVTTSPALTEATFHVASELPQWSGPAVPRTPGTLSERYRTFRKQAAEALLELADTAREKDATVLAVTHGGFIKTAMRVISDSDSFTCKLYNCGINMIEWKDGRWRIVHLNLLDHLPPPLRTS
>NZ_LN997842.1|WP_059249045.1|3315833_3317276_+|cation:proton-antiporter
MSLTPSDTAHVLLALVVLATCAHGVGHVFKRLRQPQVIGEIVGGLLLGPTVLGRISPEAQHWLLPPDGPTAAVLGAFYQIGLLLLVWLTGSELRTSDAGSERRTIGSVAVSGLVLPFACGLAVAQVLDPGELSGPTGSPATLALVFGMAIAITSVPVISRIMLDLDVLGTRFSRIVLAVAVVEDVVLYVILAIVLGVAQAETSDPHGLWSLIGTDSLPLAVVYFTAVPLVFLVVTTRWGPRLFAALSRCAFNVLNLQSPLAFRISFVFLLCAGCIGLGIDPIFGALVAGMSTAGASATGASAAGASATGAGASAAAASAVPAGEAATAAGSSHQTLRSVSLGFFVPVYFAIVGVKLDLARHLDLVFFCWFLVFACVVKLVSVWAGAAVAGESRGSAFHLAVAMNARGGPGIVLASTALQAQIINEDFFTALVLLSMATSQIAGVFLGRAVRAGRLPTKAAQPPPESAARHRPPRVQQEQL
>NZ_LN997842.1|WP_094375274.1|3315149_3315749_+|NUDIX-domain-containing-protein
MARDGARDPDVRLRTTETVLDDWFHVRRFHLESPGPDGRARRFTRLSMARGDRAAVLPYCPARGTVVLTSQFRVPAFLHGRPDGRLLEVPGGLLDADDAGTAVRREAEEETGFRIGELREVCVTYLAPQLSSERTHLFVAAYDPGHRVSAGGGVAEEGEDIQVRELPLDEALDEVLSRPAADAKTLLLLLYLRPLMSCA
>NZ_LN997842.1|WP_059249043.1|3314388_3314856_-|CYTH-domain-containing-protein
MHVEIERKFLVDSLDAVNGTDAVPVRQGYLARGEGEEVRVRRQGEEFTLTVKRGSGLTRSECEIPLAPEQFQELWPATEGARVTKSRYAVALPDGRTAHVDVFDGRLLGLATVEVEFPSESEARAFDPPAWFGAEVTEDARYANRALSSADGVPA
>NZ_LN997842.1|WP_059249042.1|3313495_3314392_-|NAD(P)-dependent-oxidoreductase
MTRVGVIGLGTMGHAMAVRLLRRGHHVTGWNRSADALGRFTAAGGTAAATPRAVARCSEVVLVATSDEQALREVTEGDEGVLAGLAGTDAVLVQTSTVAPEAYRRLSAALPPGAGLLDAPVMGSVDAVLAGRLTVFAGGPPELVRRCLPVLDDLGPVCRTGPLGSGSAAKLVANAALFGVLAQLGETLALADGLGLDRDTAFEVLAATPLAAQAERRRPSLEKDEYPTRFSLRLAAKDMGLIREAARRHGVELRLGEATSSWVERALAAGYGEEDYTVLLRGASRAPRDADPRRRDSA
>NZ_LN997842.1|WP_079080944.1|3312991_3313480_+|nucleoside-diphosphate-kinase
MAERTLVLIKPDALLRGLSGKVLARFEEAGLKIVGVKMRWMDGELVRRHYADLEERLGPDIYRRSSAFMRQSPVIALVLQAPGAVAVVRKLIGASCPDQAAPGTIRGDFSHVGNEAGRVSGKGMANIVHASATVAEAKYEVDLWFTAQELFEYRTLAEQLMY
>NZ_LN997842.1|WP_059249050.1|3322953_3325323_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MTLAPSHPVSLTEEHLQRDLEPALLRTLSELTADLPDADPGRVAAAALRGRSARADEAELRELATEAAAGLIAEDPAYSKLAARLLTLTIRDEAASQGVTSFTESVAVGHREGLIAGGTADFVRTHAERLDALAESAVAEGADDRFGYFGLRTLYSRYLLRHPITRKVVETPQHFMLRVASGLAEDRTERAVDQVAALYGLMSRLDYLPSSPTLFNSGTLHPQMSACYLLDSPQDELDSIYDRYHQVARLSKHAGGIGLSYSRIRSRGSYIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADGQWSLFSPADVPELVDLWGEEFDAAYRKAEAAGLAKKTIPARELYGRMMRTLAQTGNGWMTFKDAANRTANQTAEPGNVVHSSNLCTEILEVTNDGETAVCNLGSVNLGAFVQDGGIDWERLDETVRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGVMGLQDVFFKLRLPFDSPEAKALSTRIAERIMLAAYEASADLAERNGPLPAWEQTRAARGVLHPDHYDAEFTWPERWAALRERIAAVGMRNALLLAIAPTSTIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVQDLKDLGVWDARTREALREANGSVQDFLWIPEEIRALYRTAWEIPQRGLIDMAAARTPFLDQGQSLNLFMETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRIARAAARATVPAQQITDPDAIACSLENPESCEACQ
>NZ_LN997842.1|WP_059249051.1|3325322_3326336_+|ribonucleoside-diphosphate-reductase
MTTRPQNLLDPGFELTLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLTPEEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVENIPSIREKAEFCFKWINEVEKIDRLETKADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPDLFDDQLQQQVTDMLREAVEAELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFAPVHGSENPFSFMELQGVQELTNFFERRPSAYQVAVEGTVDLDEDF
>NZ_LN997842.1|WP_059249052.1|3326422_3326980_-|NAD(P)H-dependent-oxidoreductase
MRILGLCGSLRSGSLNAAVLRAAAELTPPPRELAVDPGLDRLPFFNADVEQTALPEVVAELRAAVGAADALLIVTPEYAHGTSGVLKNALEWLVGGGEIAAKPVALASASPAITGGDRARAWLAETLTVMGAQVIPQDLRIPQATLKIADGRVTDEPTREALAALLDDLTHAVAEAREASGTFAS
>NZ_LN997842.1|WP_059249053.1|3326985_3328221_-|cytochrome-P450
MTACPHAAGALFTPAFVADPHPVYAALREEGRAHRVTLPGGVEAWLLTGYEDCRRAFLDNDSYSKDMAATWTAFREQRVPVTGDVVIGMGDSMLVSDPPRHTRLRSLVSKGFTPRRIEALAPSIEATANRLLDDLLHREGEQAGRADLATEFAALLPMEVVRHLLDVPAEDGERLRRAVEAVMSNDEDSRDAAMAAFQEVHDCLRALVARKRTEGGDDLTSALIVARDEDDRLSEDELVSMLALLLSAGHETTVNLLGSSVLALLRHPDQLALLQREPERWPDAVEEVLRWDGPIQNAIWRFTRKPVTIGDVTIPAGEAVALSVAAADRDPDRFPGGDTFDVTRGERAHLAFGHGIHHCLGAPLARLEARIAVPLVFAKLPGLALAGEPAYRPSTVSRALSSLPVTFRNVG
>NZ_LN997842.1|WP_059249054.1|3328261_3329455_-|cytochrome-P450
MTALLPEFPMPREHPLDPPPQYRALSAERPVFQVRTPRGDTAWVVTRHEDVRAVLTHRAFSSDPRTPGFPTYVTGDVPPPAGFFMQADPPDHGRLRRTVTREFLINQMEALRPTMRRILDDLVDRMSADGRREADLVREFALPMAAMTICEILGVPFEDHVLFVTLTDTVLDRTSTPEQAVQAATELMGYFDRLVTAKEQRPSEDLFGRMVARSADGGLHHEELVGMAALLLLAGYDTMAQMIGIGTVTLFEHPDQLAELTQNPGLLPGAVEELLRYLSINHAGLPRAATEDVVVGGQQIRAGDGVLVMLNAANRDETVFENADSFDIHRVNTGKHLAFGHGFHKCVGATLARVELTEVFGGLFRRLPGLRPAKPLHELPFRHDMVLYGVRALPVTW
>NZ_LN997842.1|WP_059249055.1|3329506_3329782_-|acyl-carrier-protein
MSDLTTQTPAPTAAELVDWLRDRVAAQTGRPAEEIATDVPLNDYGLDSVYVFGLCAEIEDRYGIEVEPTVMWDNTSLAPLAEALLPLIAAR
>NZ_LN997842.1|WP_079081310.1|3329800_3331381_-|hypothetical-protein
MLAAGEDLLTGFGLGSHFVPEDLGGRLARLDDLIRVMRAVYRRDPCLGLGHGAGSFMAAVNVWTAGSAAQRQRLARRLLTGGRAACAYHELDHGNDFTRAGLTALPGPDGRLRLDGRKEVVANLRRAETMVLFARTDPAHGSRSHSQLLLDTADLPATAVRHLDRFPTVGMRGVQLGGIEFTDCPVPDDSVVGRPGQGVETALRSFQLTRIALPGMTIGLLDTALRTAVRGARGRTLYGGPAADLPLSRSILTETFADLLLADTFTTVAARAAHTAPAQAGVYASAVKAFVPTVLIRAVQRLSELLGSQFYLRAGEQPLFQKLLRDVQPSAFGHASRISCQSALLPQLPLTARRGWRSATADPLPADTFRPGRPLPPLSFADLTVSAAGRDPLARSLVLGTEAAAPDDPLAESGRAWCARLAALAADASALPPTLIGPDAPPYAFGLTARWTGVLAASACLNTWWSRNGEAADPAVTLALLHRLGTHLDHHRDPLPPHLAEPLHTELLRRFDAGLTFDLDRRPTGA
>NZ_LN997842.1|WP_107118074.1|3331704_3333360_-|acyl-CoA-dehydrogenase
MPGALDTAIDAAAVPGGPFHPATGARLDAREEFPAEACAVLDGCGTARAYVPAELGGASGGLPELVAALRTVARRDVTVAVAHGKTFLGSVPTWVAGTDEQRRTLARRVLAGAVVSWGLTEPGHGSDLLAGELTAEPTADGGWRLDGAKWPINNATRGDLISVLARTAPEGGPRGFSQLLVDKHALAPGTWSPLPKEPTHGIRGADISGIRFTGAKTPADALTGRPGDGLDIVLRSLQLTRTVCTSLSLGAGEHALRLAHAFAAGRAMYGTTLLRLPLARRVLGRAAASLALADAASLVAARAAHHLPGEMSVVSAAVKAGVPEIVQLAVDDLAELLGARGFLTEHHAHGAFQKLERDHRIVAIFDGSTAVNRVSLINQFPVLARLHRKGAYDAEGLAATVTAQPVPPVDAGALRLFSRTGCSVVQALPAAAERLAALAATGALPRRVPELAAALAAEAAAVADAMAAPRPAGRGTPPEAFEAARRYERCFAGAAAAHLLLADPGDQPRAGSLTAALERALELLRPGHEAPEEAYEPMLETLAEPAKELIP
>NZ_LN997842.1|WP_059249057.1|3333386_3335144_-|fatty-acyl-AMP-ligase
MTHPSPLDEPTALHLLRRHAAERPGRAAVTFVHDHDAADGARTLDYAALDAEARRVASWLQERCAPGDRVLLLHPPGLPFVTAFLGCLYAGTVAVPSPMPGQFQYQQRRVTRIALDAGVGVALTDSGQLEEARRWIETENLGFTVAASDTDGFGAADAWRDPGATAGDLVLLQYTSGSTGDPKGVMVDHGNLLHNADSLRRALGLTEDTNFGGWIPLYHDMGLMGQLLPSLFLGSHCALMSPMAFLKRPHQWLSLLDRYDVGYSAAPNFAYELCVRRVTDAQLAGLDLSRWTFAANGSEPIQASTLRDFAERFAPAGFRAEALAPCYGMAEATVFVSGLAGRPPRVEPVDSDALEKHVLQPPLPEGPVRELVGCGNVPDFDVRIVDPADGTVLPDGTTGEIWLRGPSVAAGYWGRPDATEETFGARTADGDGPFLRTGDLGALVDGEIYVTGRSKDLLIVHGRNLYPQDIEHELRRRHPELATLAGTAFTVPVPQEEVVVLHEIRGRFTDEQYAELSRALRTTVYQEFGVRTAGLVLLRPGSVRKTTSGKVQRSEMRRLFLDGALTPLHAHLEPAVRELVGEVPA
>NZ_LN997842.1|WP_059249058.1|3335140_3336853_-|NAD-dependent-epimerase/dehydratase-family-protein
MSTVNASIPPLANDPLAQTAWAAFRTRLRDFAAEQLPEAMVPSRFVVLPELPKLPNGKVDRGRLPAVSDGESAGTAYVAPQTPLEIRLAEIWADLLGVGRVGLKDNFFELGGDSLAAAQMAARLRAATGLQVNLRGLFDHPTLERLARHLDTQDGTAPTADTGRHPRSITGADLAAEAVLPADITPAADALPPAATPYRTVLLTGGTGYTGAFLMRELLDRSDAHLYVLVRADTPGQAADRVRAAMRTYGVWRDGDERRFTGVPGDLARPYFGLDHDTYLRLARDVEMIVHNGAWSSYALPYRRLKPVNVLGTQEVLRLAARHRIKPVHYISSLAVYPGRPGEHRWAEDAATDPEGVVGGYRQTKWVGDRMMAQAHERGLPTCVYRPGQITGAQTTGACAEDTFLNATLKGCVQLGAALEFDVFLEMTPVDFCAAAVAHIALGGQWHGTAFNLPGGHPLAWNRLVELLAECGYPLRRLSYADWYAELTRAVEGGTENELARFLPLFGADQPAEDLGYRGSRPVFDTTHLRAALTGSGIACLPPERELVGRYLDHFEATGFLPARAERTAP

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Crispr_ID: NZ_LN997842_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN997842_7

3322195-3322355

Orphan

Consensus_repeat	Method
CCACCTGGACCTGCGCAACAACC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_LN997842_7

>merge|NZ_LN997842|7|3322195-3322355|CRISPRCasFinder
CCACCTGGACCTGCGCAACAACCAGCTCCGCGAACTGCCCGACGCCGTCGCCGGATTGACCGAGCTGACCCATCTGGACCTGCGCAACAACCGCCTGACCCGCCTGCCGGACGCCCTCGCCACGCTCCCCGCGCTGGAGAAGCTGGACCTGCGCTGGAACG

>NZ_LN997842|7|7|3322195-3322355|CRISPRCasFinder
CCACCTGGACCTGCGCAACAACC	AGCTCCGCGAACTGCCCGACGCCGTCGCCGGATTGACCGAGCTGAC
CCATCTGGACCTGCGCAACAACC	GCCTGACCCGCCTGCCGGACGCCCTCGCCACGCTCCCCGCGCTGGA
GAAGCTGGACCTGCGCTGGAACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN997842.1\|WP_079080944.1\|3312991_3313480_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|366034
NZ_LN997842.1\|WP_079080945.1\|3317858_3318275_+\|DUF190-domain-containing-protein	unknown	unknown	gnl\|CDD\|376875
NZ_LN997842.1\|WP_059249046.1\|3317316_3317919_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_LN997842.1\|WP_059249058.1\|3335140_3336853_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|273787
NZ_LN997842.1\|WP_107118074.1\|3331704_3333360_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173838
NZ_LN997842.1\|WP_059249053.1\|3326985_3328221_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_LN997842.1\|WP_059249051.1\|3325322_3326336_+\|ribonucleoside-diphosphate-reductase	unknown	unknown	gnl\|CDD\|153108
NZ_LN997842.1\|WP_059249052.1\|3326422_3326980_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NZ_LN997842.1\|WP_059249055.1\|3329506_3329782_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|376348
NZ_LN997842.1\|WP_059249043.1\|3314388_3314856_-\|CYTH-domain-containing-protein	unknown	unknown	gnl\|CDD\|143626
NZ_LN997842.1\|WP_059249057.1\|3333386_3335144_-\|fatty-acyl-AMP-ligase	unknown	unknown	gnl\|CDD\|341254
NZ_LN997842.1\|WP_094374136.1\|3318282_3319053_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059249042.1\|3313495_3314392_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NZ_LN997842.1\|WP_059249048.1\|3319086_3319917_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_079081310.1\|3329800_3331381_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173838
NZ_LN997842.1\|WP_094375274.1\|3315149_3315749_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|184971
NZ_LN997842.1\|WP_059249054.1\|3328261_3329455_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_LN997842.1\|WP_059249050.1\|3322953_3325323_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|274170
NZ_LN997842.1\|WP_059249049.1\|3319920_3321318_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_LN997842.1\|WP_059249045.1\|3315833_3317276_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551

Protein	Function_ID	Function_description	E-value
NZ_LN997842.1\|WP_079080944.1\|3312991_3313480_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|366034	pfam00334, NDK, Nucleoside diphosphate kinase.	1.53451e-51
NZ_LN997842.1\|WP_079080945.1\|3317858_3318275_+\|DUF190-domain-containing-protein	gnl\|CDD\|376875	pfam02641, DUF190, Uncharacterized ACR, COG1993.	1.08646e-19
NZ_LN997842.1\|WP_059249046.1\|3317316_3317919_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	4.57306e-33
NZ_LN997842.1\|WP_059249058.1\|3335140_3336853_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|273787	TIGR01746, L-aminoadipate-semialdehyde_dehydrogenase, thioester reductase domain. This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine, as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP\|466833 from M. leprae, GP\|435954 from Anabaena and OMNI\|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI\|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.	1.09435e-87
NZ_LN997842.1\|WP_059249057.1\|3333386_3335144_-\|fatty-acyl-AMP-ligase	gnl\|CDD\|341254	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin.	0
NZ_LN997842.1\|WP_059249053.1\|3326985_3328221_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	1.39277e-97
NZ_LN997842.1\|WP_059249049.1\|3319920_3321318_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.22042e-38
NZ_LN997842.1\|WP_059249055.1\|3329506_3329782_-\|acyl-carrier-protein	gnl\|CDD\|376348	pfam00550, PP-binding, Phosphopantetheine attachment site. A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of the anguibactin system regulator AngR has the attachment serine replaced by an alanine.	3.33823e-13
NZ_LN997842.1\|WP_059249051.1\|3325322_3326336_+\|ribonucleoside-diphosphate-reductase	gnl\|CDD\|153108	cd01049, RNRR2, Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-helical bundle; some have 2 addition beta strands. Yeast is unique in that it assembles both homodimers and heterodimers of RNRR2. The yeast heterodimer, Y2Y4, contains R2 (Y2) and a R2 homolog (Y4) that lacks the diiron center and is proposed to only assist in cofactor assembly, and perhaps stabilize R1 (Y1) in its active conformation.	1.41982e-107
NZ_LN997842.1\|WP_059249043.1\|3314388_3314856_-\|CYTH-domain-containing-protein	gnl\|CDD\|143626	cd07761, CYTH-like_CthTTM-like, Clostridium thermocellum (Cth)TTM and similar proteins, a subgroup of the CYTH-like superfamily. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. Members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily have a unique active site located within an eight-stranded beta barrel.	1.50161e-64
NZ_LN997842.1\|WP_059249042.1\|3313495_3314392_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	1.87664e-65
NZ_LN997842.1\|WP_107118074.1\|3331704_3333360_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173838	cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC).	6.96137e-51
NZ_LN997842.1\|WP_079081310.1\|3329800_3331381_-\|hypothetical-protein	gnl\|CDD\|173838	cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC).	3.6794e-51
NZ_LN997842.1\|WP_094375274.1\|3315149_3315749_+\|NUDIX-domain-containing-protein	gnl\|CDD\|184971	PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional.	1.25262e-41
NZ_LN997842.1\|WP_059249054.1\|3328261_3329455_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.85926e-78
NZ_LN997842.1\|WP_059249050.1\|3322953_3325323_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|274170	TIGR02506, Ribonucleoside-diphosphate_reductase_large_subunit, ribonucleoside-diphosphate reductase, alpha subunit. This model represents the alpha (large) chain of the class I ribonucleotide reductase (RNR). RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Class I RNR's generate the required radical (on tyrosine) via a "non-heme" iron cofactor which resides in the beta (small) subunit. The alpha subunit contains the catalytic and allosteric regulatory sites. The mechanism of this enzyme requires molecular oxygen. E. Coli contains two versions of this enzyme which are regulated independently (NrdAB and NrdEF, where NrdA and NrdE are the large chains). Most organisms contain only one, but the application of the gene symbols NrdA and NrdE are somewhat arbitrary. This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	0
NZ_LN997842.1\|WP_059249052.1\|3326422_3326980_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	2.7969e-32
NZ_LN997842.1\|WP_059249045.1\|3315833_3317276_+\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	3.30377e-33

>NZ_LN997842.1|WP_059249049.1|3319920_3321318_+|MFS-transporter
MPSPEADALESARRADLPTPPAPAGALALLATAQLLIGLDYSIVYVALPVIDTALGFSAESLQWVVSAYAVFFAGLLLVCGRLVDTFGARGVFLGAAGVLAAASLGAGLCAGSAQLIVFRALQGAGAAALAPATLSLLTQIFPPGPRQTRALTVWSTTGAAGLAVGVLGGGVLTQLTSWRWIFLAVAVVAAAMAVAGLRLPRPGRPGAFRADLSLGRALLATAAVLLVVLWLTRVTGGGWGRPAEYLPPAVAAVCAAGFVRLDRRSGNPMVPRALLRRRPFVVACAAAALFMASFGAEFYVVTLLMHDVHHYSALMAGVAFLPLAATAPLGSAVTGRLTRTFGALPTLVAGFAIGAAGVALLLPMTSGGPYALTVLPGLVVSGVGQGIAYTAAYGLGTSVLDEQQGVGSALITTVQYFGGSVGLAVLVSVMGETPSGASARAGIALLAAVALAAVVVLPVAHRKH
>NZ_LN997842.1|WP_059249048.1|3319086_3319917_+|hypothetical-protein
MINPQVPTADPIYARTGDFAVFNQLGLKLAFPNDVSKEDYYAWLDTMHEKVGTMVKGAEIAEKSYARKEPRLNTGVYYDTDDYRLLRAGAVLRTTCNIKTHAFCAFKLSEDEHNVRRDHRYSFDGEDKLTIQQAPTSPEAQAAVKRLLARTDIEHPGIHLREKFGITGDDLSPAVCLRQYRHPFFVWIDKKDALRCSMDRVRVHSMRRPDGEEHEVPFSEIELPVYPHLDEEMANDPRLIQLIEALAESLRSWFGIEPISESKYQRAAQVLGLSTS
>NZ_LN997842.1|WP_094374136.1|3318282_3319053_+|hypothetical-protein
MTSVVAQETPTTAPLSLRQVADTLDRLPVDRSEPTIAANLDLVHQLGQPGPMTGLLREILADDKALAAIAARSYPHTNHFDKIVLVDSGTALGYRLTLHLWNPPYSDAEAEDEQIHDHRFSFWSHVVLGTLTSQNFVRDATGVQFGEYQYIPEKINDVATVGNYYVNVGTSPLLEADRPAVPQGHSYSLDFAQIHRVLLPRTSPTCTLVLRGPRQKNYASVFSNSQKYDPSANEMFSPDQLAEKLRIILGHIAASA
>NZ_LN997842.1|WP_079080945.1|3317858_3318275_+|DUF190-domain-containing-protein
MADSPPQPPGPPSASPAHLVGIPRLRPACRATLTLRGGTLWRHRPLYAELVRRAKEQGLAGAHVLHAIEGFSPGGPVVHHRTFGLRDRLPLCVVIVDDRPAVDRFLGSLDPRMQVDSIVLDRVYQLTPHDGTPRTDKE
>NZ_LN997842.1|WP_059249046.1|3317316_3317919_+|histidine-phosphatase-family-protein
MRICLVRHGQSLWQLAPSRDWDTRLSDLGHRQAAALATWWAEHELLDATTRLDVGVLSASPLKRAQETAGHLADALHLPVTTSPALTEATFHVASELPQWSGPAVPRTPGTLSERYRTFRKQAAEALLELADTAREKDATVLAVTHGGFIKTAMRVISDSDSFTCKLYNCGINMIEWKDGRWRIVHLNLLDHLPPPLRTS
>NZ_LN997842.1|WP_059249045.1|3315833_3317276_+|cation:proton-antiporter
MSLTPSDTAHVLLALVVLATCAHGVGHVFKRLRQPQVIGEIVGGLLLGPTVLGRISPEAQHWLLPPDGPTAAVLGAFYQIGLLLLVWLTGSELRTSDAGSERRTIGSVAVSGLVLPFACGLAVAQVLDPGELSGPTGSPATLALVFGMAIAITSVPVISRIMLDLDVLGTRFSRIVLAVAVVEDVVLYVILAIVLGVAQAETSDPHGLWSLIGTDSLPLAVVYFTAVPLVFLVVTTRWGPRLFAALSRCAFNVLNLQSPLAFRISFVFLLCAGCIGLGIDPIFGALVAGMSTAGASATGASAAGASATGAGASAAAASAVPAGEAATAAGSSHQTLRSVSLGFFVPVYFAIVGVKLDLARHLDLVFFCWFLVFACVVKLVSVWAGAAVAGESRGSAFHLAVAMNARGGPGIVLASTALQAQIINEDFFTALVLLSMATSQIAGVFLGRAVRAGRLPTKAAQPPPESAARHRPPRVQQEQL
>NZ_LN997842.1|WP_094375274.1|3315149_3315749_+|NUDIX-domain-containing-protein
MARDGARDPDVRLRTTETVLDDWFHVRRFHLESPGPDGRARRFTRLSMARGDRAAVLPYCPARGTVVLTSQFRVPAFLHGRPDGRLLEVPGGLLDADDAGTAVRREAEEETGFRIGELREVCVTYLAPQLSSERTHLFVAAYDPGHRVSAGGGVAEEGEDIQVRELPLDEALDEVLSRPAADAKTLLLLLYLRPLMSCA
>NZ_LN997842.1|WP_059249043.1|3314388_3314856_-|CYTH-domain-containing-protein
MHVEIERKFLVDSLDAVNGTDAVPVRQGYLARGEGEEVRVRRQGEEFTLTVKRGSGLTRSECEIPLAPEQFQELWPATEGARVTKSRYAVALPDGRTAHVDVFDGRLLGLATVEVEFPSESEARAFDPPAWFGAEVTEDARYANRALSSADGVPA
>NZ_LN997842.1|WP_059249042.1|3313495_3314392_-|NAD(P)-dependent-oxidoreductase
MTRVGVIGLGTMGHAMAVRLLRRGHHVTGWNRSADALGRFTAAGGTAAATPRAVARCSEVVLVATSDEQALREVTEGDEGVLAGLAGTDAVLVQTSTVAPEAYRRLSAALPPGAGLLDAPVMGSVDAVLAGRLTVFAGGPPELVRRCLPVLDDLGPVCRTGPLGSGSAAKLVANAALFGVLAQLGETLALADGLGLDRDTAFEVLAATPLAAQAERRRPSLEKDEYPTRFSLRLAAKDMGLIREAARRHGVELRLGEATSSWVERALAAGYGEEDYTVLLRGASRAPRDADPRRRDSA
>NZ_LN997842.1|WP_079080944.1|3312991_3313480_+|nucleoside-diphosphate-kinase
MAERTLVLIKPDALLRGLSGKVLARFEEAGLKIVGVKMRWMDGELVRRHYADLEERLGPDIYRRSSAFMRQSPVIALVLQAPGAVAVVRKLIGASCPDQAAPGTIRGDFSHVGNEAGRVSGKGMANIVHASATVAEAKYEVDLWFTAQELFEYRTLAEQLMY
>NZ_LN997842.1|WP_059249050.1|3322953_3325323_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MTLAPSHPVSLTEEHLQRDLEPALLRTLSELTADLPDADPGRVAAAALRGRSARADEAELRELATEAAAGLIAEDPAYSKLAARLLTLTIRDEAASQGVTSFTESVAVGHREGLIAGGTADFVRTHAERLDALAESAVAEGADDRFGYFGLRTLYSRYLLRHPITRKVVETPQHFMLRVASGLAEDRTERAVDQVAALYGLMSRLDYLPSSPTLFNSGTLHPQMSACYLLDSPQDELDSIYDRYHQVARLSKHAGGIGLSYSRIRSRGSYIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADGQWSLFSPADVPELVDLWGEEFDAAYRKAEAAGLAKKTIPARELYGRMMRTLAQTGNGWMTFKDAANRTANQTAEPGNVVHSSNLCTEILEVTNDGETAVCNLGSVNLGAFVQDGGIDWERLDETVRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGVMGLQDVFFKLRLPFDSPEAKALSTRIAERIMLAAYEASADLAERNGPLPAWEQTRAARGVLHPDHYDAEFTWPERWAALRERIAAVGMRNALLLAIAPTSTIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVQDLKDLGVWDARTREALREANGSVQDFLWIPEEIRALYRTAWEIPQRGLIDMAAARTPFLDQGQSLNLFMETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRIARAAARATVPAQQITDPDAIACSLENPESCEACQ
>NZ_LN997842.1|WP_059249051.1|3325322_3326336_+|ribonucleoside-diphosphate-reductase
MTTRPQNLLDPGFELTLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLTPEEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVENIPSIREKAEFCFKWINEVEKIDRLETKADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPDLFDDQLQQQVTDMLREAVEAELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFAPVHGSENPFSFMELQGVQELTNFFERRPSAYQVAVEGTVDLDEDF
>NZ_LN997842.1|WP_059249052.1|3326422_3326980_-|NAD(P)H-dependent-oxidoreductase
MRILGLCGSLRSGSLNAAVLRAAAELTPPPRELAVDPGLDRLPFFNADVEQTALPEVVAELRAAVGAADALLIVTPEYAHGTSGVLKNALEWLVGGGEIAAKPVALASASPAITGGDRARAWLAETLTVMGAQVIPQDLRIPQATLKIADGRVTDEPTREALAALLDDLTHAVAEAREASGTFAS
>NZ_LN997842.1|WP_059249053.1|3326985_3328221_-|cytochrome-P450
MTACPHAAGALFTPAFVADPHPVYAALREEGRAHRVTLPGGVEAWLLTGYEDCRRAFLDNDSYSKDMAATWTAFREQRVPVTGDVVIGMGDSMLVSDPPRHTRLRSLVSKGFTPRRIEALAPSIEATANRLLDDLLHREGEQAGRADLATEFAALLPMEVVRHLLDVPAEDGERLRRAVEAVMSNDEDSRDAAMAAFQEVHDCLRALVARKRTEGGDDLTSALIVARDEDDRLSEDELVSMLALLLSAGHETTVNLLGSSVLALLRHPDQLALLQREPERWPDAVEEVLRWDGPIQNAIWRFTRKPVTIGDVTIPAGEAVALSVAAADRDPDRFPGGDTFDVTRGERAHLAFGHGIHHCLGAPLARLEARIAVPLVFAKLPGLALAGEPAYRPSTVSRALSSLPVTFRNVG
>NZ_LN997842.1|WP_059249054.1|3328261_3329455_-|cytochrome-P450
MTALLPEFPMPREHPLDPPPQYRALSAERPVFQVRTPRGDTAWVVTRHEDVRAVLTHRAFSSDPRTPGFPTYVTGDVPPPAGFFMQADPPDHGRLRRTVTREFLINQMEALRPTMRRILDDLVDRMSADGRREADLVREFALPMAAMTICEILGVPFEDHVLFVTLTDTVLDRTSTPEQAVQAATELMGYFDRLVTAKEQRPSEDLFGRMVARSADGGLHHEELVGMAALLLLAGYDTMAQMIGIGTVTLFEHPDQLAELTQNPGLLPGAVEELLRYLSINHAGLPRAATEDVVVGGQQIRAGDGVLVMLNAANRDETVFENADSFDIHRVNTGKHLAFGHGFHKCVGATLARVELTEVFGGLFRRLPGLRPAKPLHELPFRHDMVLYGVRALPVTW
>NZ_LN997842.1|WP_059249055.1|3329506_3329782_-|acyl-carrier-protein
MSDLTTQTPAPTAAELVDWLRDRVAAQTGRPAEEIATDVPLNDYGLDSVYVFGLCAEIEDRYGIEVEPTVMWDNTSLAPLAEALLPLIAAR
>NZ_LN997842.1|WP_079081310.1|3329800_3331381_-|hypothetical-protein
MLAAGEDLLTGFGLGSHFVPEDLGGRLARLDDLIRVMRAVYRRDPCLGLGHGAGSFMAAVNVWTAGSAAQRQRLARRLLTGGRAACAYHELDHGNDFTRAGLTALPGPDGRLRLDGRKEVVANLRRAETMVLFARTDPAHGSRSHSQLLLDTADLPATAVRHLDRFPTVGMRGVQLGGIEFTDCPVPDDSVVGRPGQGVETALRSFQLTRIALPGMTIGLLDTALRTAVRGARGRTLYGGPAADLPLSRSILTETFADLLLADTFTTVAARAAHTAPAQAGVYASAVKAFVPTVLIRAVQRLSELLGSQFYLRAGEQPLFQKLLRDVQPSAFGHASRISCQSALLPQLPLTARRGWRSATADPLPADTFRPGRPLPPLSFADLTVSAAGRDPLARSLVLGTEAAAPDDPLAESGRAWCARLAALAADASALPPTLIGPDAPPYAFGLTARWTGVLAASACLNTWWSRNGEAADPAVTLALLHRLGTHLDHHRDPLPPHLAEPLHTELLRRFDAGLTFDLDRRPTGA
>NZ_LN997842.1|WP_107118074.1|3331704_3333360_-|acyl-CoA-dehydrogenase
MPGALDTAIDAAAVPGGPFHPATGARLDAREEFPAEACAVLDGCGTARAYVPAELGGASGGLPELVAALRTVARRDVTVAVAHGKTFLGSVPTWVAGTDEQRRTLARRVLAGAVVSWGLTEPGHGSDLLAGELTAEPTADGGWRLDGAKWPINNATRGDLISVLARTAPEGGPRGFSQLLVDKHALAPGTWSPLPKEPTHGIRGADISGIRFTGAKTPADALTGRPGDGLDIVLRSLQLTRTVCTSLSLGAGEHALRLAHAFAAGRAMYGTTLLRLPLARRVLGRAAASLALADAASLVAARAAHHLPGEMSVVSAAVKAGVPEIVQLAVDDLAELLGARGFLTEHHAHGAFQKLERDHRIVAIFDGSTAVNRVSLINQFPVLARLHRKGAYDAEGLAATVTAQPVPPVDAGALRLFSRTGCSVVQALPAAAERLAALAATGALPRRVPELAAALAAEAAAVADAMAAPRPAGRGTPPEAFEAARRYERCFAGAAAAHLLLADPGDQPRAGSLTAALERALELLRPGHEAPEEAYEPMLETLAEPAKELIP
>NZ_LN997842.1|WP_059249057.1|3333386_3335144_-|fatty-acyl-AMP-ligase
MTHPSPLDEPTALHLLRRHAAERPGRAAVTFVHDHDAADGARTLDYAALDAEARRVASWLQERCAPGDRVLLLHPPGLPFVTAFLGCLYAGTVAVPSPMPGQFQYQQRRVTRIALDAGVGVALTDSGQLEEARRWIETENLGFTVAASDTDGFGAADAWRDPGATAGDLVLLQYTSGSTGDPKGVMVDHGNLLHNADSLRRALGLTEDTNFGGWIPLYHDMGLMGQLLPSLFLGSHCALMSPMAFLKRPHQWLSLLDRYDVGYSAAPNFAYELCVRRVTDAQLAGLDLSRWTFAANGSEPIQASTLRDFAERFAPAGFRAEALAPCYGMAEATVFVSGLAGRPPRVEPVDSDALEKHVLQPPLPEGPVRELVGCGNVPDFDVRIVDPADGTVLPDGTTGEIWLRGPSVAAGYWGRPDATEETFGARTADGDGPFLRTGDLGALVDGEIYVTGRSKDLLIVHGRNLYPQDIEHELRRRHPELATLAGTAFTVPVPQEEVVVLHEIRGRFTDEQYAELSRALRTTVYQEFGVRTAGLVLLRPGSVRKTTSGKVQRSEMRRLFLDGALTPLHAHLEPAVRELVGEVPA
>NZ_LN997842.1|WP_059249058.1|3335140_3336853_-|NAD-dependent-epimerase/dehydratase-family-protein
MSTVNASIPPLANDPLAQTAWAAFRTRLRDFAAEQLPEAMVPSRFVVLPELPKLPNGKVDRGRLPAVSDGESAGTAYVAPQTPLEIRLAEIWADLLGVGRVGLKDNFFELGGDSLAAAQMAARLRAATGLQVNLRGLFDHPTLERLARHLDTQDGTAPTADTGRHPRSITGADLAAEAVLPADITPAADALPPAATPYRTVLLTGGTGYTGAFLMRELLDRSDAHLYVLVRADTPGQAADRVRAAMRTYGVWRDGDERRFTGVPGDLARPYFGLDHDTYLRLARDVEMIVHNGAWSSYALPYRRLKPVNVLGTQEVLRLAARHRIKPVHYISSLAVYPGRPGEHRWAEDAATDPEGVVGGYRQTKWVGDRMMAQAHERGLPTCVYRPGQITGAQTTGACAEDTFLNATLKGCVQLGAALEFDVFLEMTPVDFCAAAVAHIALGGQWHGTAFNLPGGHPLAWNRLVELLAECGYPLRRLSYADWYAELTRAVEGGTENELARFLPLFGADQPAEDLGYRGSRPVFDTTHLRAALTGSGIACLPPERELVGRYLDHFEATGFLPARAERTAP

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Crispr_ID: NZ_LN997842_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN997842_8

5339939-5340039

Orphan

Consensus_repeat	Method
TTGCTGTAGCTGCTCTTGCGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN997842_8

>merge|NZ_LN997842|8|5339939-5340039|CRISPRCasFinder
TTGCTGTAGCTGCTCTTGCGCCAATCAGCAGCTTTCAGCAGGTCGTCGGAGACTTCGAGGCAGGCGCCGCCGTCCGTATTGCTGTAGCTGCTCTTGCGCCA

>NZ_LN997842|8|8|5339939-5340039|CRISPRCasFinder
TTGCTGTAGCTGCTCTTGCGCCA	ATCAGCAGCTTTCAGCAGGTCGTCGGAGACTTCGAGGCAGGCGCCGCCGTCCGTA
TTGCTGTAGCTGCTCTTGCGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN997842.1\|WP_059255125.1\|5338922_5339393_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059251265.1\|5340050_5340893_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379262
NZ_LN997842.1\|WP_059251254.1\|5333170_5333950_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_LN997842.1\|WP_059251250.1\|5330838_5331837_-\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|273938
NZ_LN997842.1\|WP_079081066.1\|5341462_5341738_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_094373466.1\|5336609_5337806_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|275041
NZ_LN997842.1\|WP_063808569.1\|5338061_5338910_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379262
NZ_LN997842.1\|WP_004000115.1\|5341838_5342129_-\|DUF1416-domain-containing-protein	unknown	unknown	gnl\|CDD\|377793
NZ_LN997842.1\|WP_059251271.1\|5343435_5344173_-\|DUF2993-domain-containing-protein	unknown	unknown	gnl\|CDD\|378597
NZ_LN997842.1\|WP_059251278.1\|5345082_5345445_-\|sulfur-reduction-protein-DsrE	unknown	unknown	gnl\|CDD\|224955
NZ_LN997842.1\|WP_107118006.1\|5344259_5344568_+\|DUF3099-domain-containing-protein	unknown	unknown	gnl\|CDD\|378630
NZ_LN997842.1\|WP_059251275.1\|5344603_5345074_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059251259.1\|5335338_5336589_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237605
NZ_LN997842.1\|WP_059251269.1\|5342165_5343011_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_LN997842.1\|WP_059251267.1\|5341058_5341466_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059251257.1\|5335080_5335335_+\|molybdopterin-synthase-sulfur-carrier-subunit	unknown	unknown	gnl\|CDD\|340560
NZ_LN997842.1\|WP_079081065.1\|5332040_5333063_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_LN997842.1\|WP_003974792.1\|5345556_5345655_+\|membrane-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059251261.1\|5339421_5339691_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059251255.1\|5334329_5334989_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|224423

Protein	Function_ID	Function_description	E-value
NZ_LN997842.1\|WP_079081065.1\|5332040_5333063_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	4.58276e-97
NZ_LN997842.1\|WP_059251265.1\|5340050_5340893_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|379262	pfam13560, HTH_31, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	1.82916e-09
NZ_LN997842.1\|WP_059251254.1\|5333170_5333950_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.43191e-46
NZ_LN997842.1\|WP_059251250.1\|5330838_5331837_-\|trypsin-like-serine-protease	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	9.10779e-64
NZ_LN997842.1\|WP_094373466.1\|5336609_5337806_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|275041	TIGR04188, conserved_hypothetical_protein, methyltransferase, ATP-grasp peptide maturase system. Members of this protein family are predicted SAM-dependent methyltransferases that regularly occur in the context of a putative peptide modification ATP-grasp enzyme (TIGR04187, related to enzymes of microviridin maturation) and a putative ribosomal peptide modification target (TIGR04186).	2.80985e-75
NZ_LN997842.1\|WP_063808569.1\|5338061_5338910_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|379262	pfam13560, HTH_31, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	9.51597e-09
NZ_LN997842.1\|WP_004000115.1\|5341838_5342129_-\|DUF1416-domain-containing-protein	gnl\|CDD\|377793	pfam07210, DUF1416, Protein of unknown function (DUF1416). This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.	1.79564e-36
NZ_LN997842.1\|WP_059251271.1\|5343435_5344173_-\|DUF2993-domain-containing-protein	gnl\|CDD\|378597	pfam11209, DUF2993, Protein of unknown function (DUF2993). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	1.35104e-20
NZ_LN997842.1\|WP_059251278.1\|5345082_5345445_-\|sulfur-reduction-protein-DsrE	gnl\|CDD\|224955	COG2044, COG2044, Predicted peroxiredoxins [General function prediction only].	4.25291e-16
NZ_LN997842.1\|WP_059251259.1\|5335338_5336589_+\|hypothetical-protein	gnl\|CDD\|237605	PRK14086, dnaA, chromosomal replication initiator protein DnaA.	3.23938e-06
NZ_LN997842.1\|WP_059251269.1\|5342165_5343011_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	2.17313e-102
NZ_LN997842.1\|WP_107118006.1\|5344259_5344568_+\|DUF3099-domain-containing-protein	gnl\|CDD\|378630	pfam11298, DUF3099, Protein of unknown function (DUF3099). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	9.43992e-06
NZ_LN997842.1\|WP_059251257.1\|5335080_5335335_+\|molybdopterin-synthase-sulfur-carrier-subunit	gnl\|CDD\|340560	cd17040, Ubl_MoaD_like, ubiquitin-like (Ubl) domain found in a group of small sulfide carrier proteins. Ubiquitin-like (Ubl) domain found in a group of small sulfide carrier proteins This family includes ThiS, MoaD, CysO, QbsE, and their homologs, which are structurally homologous to ubiquitin (Ub) and may function as the sulfide donor for the biosynthesis of thiamin, molybdopterin, cysteine, thioquinolobactin, and other sulfur-containing natural products. Ub is a protein modifier in eukaryotes that is involved in various cellular processes, including transcriptional regulation, cell cycle control, and DNA repair. Ubiquitination is comprised of a cascade of E1, E2 and E3 enzymes that results in a covalent bond between the C-terminus of Ub and the epsilon-amino group of a substrate lysine. Like Ub, small sulfide carrier proteins in this family are adenylated at a diglycyl C-terminus by specific activating proteins. The adenylated C-terminus is subsequently converted to a thiocarboxylate, serving as the sulfide source. Those activating proteins are diverse and show little sequence similarity. This family also includes the small archaeal modifier protein (SAMP), including SAMP1, SAMP2 and SAMP3, which are Ub-like proteins that function as protein modifiers and are required for the production of sulfur-containing biomolecules in the archaeon Haloferax volcanii. SAMP1 and SAMP2 are involved in sulfur transfer during molybdenum cofactor biosynthesis and tRNA thiolation much like MoaD and Urm1, respectively. They can form covalent conjugates with their protein targets through an isopeptide linkage via their C-terminal diglycine motif in a streamlined archaeal E1-dependent pathway. SAMP2 also forms homo-conjugates through the intermolecular isopeptide bond between the C-terminal Gly and the Lys58 side chain, a feature that likely resembles polyubiquitination. SAMP3 conjugates are dependent on the Ub-activating E1 enzyme homolog of archaea (UbaA) for synthesis and are cleaved by the JAMM/MPN+ domain metalloprotease HvJAMM1.	1.39617e-10
NZ_LN997842.1\|WP_059251255.1\|5334329_5334989_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	6.95138e-14

>NZ_LN997842.1|WP_059251261.1|5339421_5339691_-|hypothetical-protein
MALKFLGIWPNTPDDGSPTIWLEDTTGDLIIQSWKADEATIREAQQVGSVPGHSTDIPEHETVIRLPANMLQFIPRPEGKDNDGGHSGT
>NZ_LN997842.1|WP_059255125.1|5338922_5339393_-|hypothetical-protein
MHLEMRDSYMRDDPEFIRWQQGHRYDPADRDSWWRPWLDVVAETTGRGVVMRRLRVISEPLSDYVRYEYDGTFTNVAAGEDVRWLPRARARDLLLPALDGWVMDEEILILHHFSGEGQWTGPRMEVCHDSALAAQYVRAYEAAWERAIPHTEYQPS
>NZ_LN997842.1|WP_063808569.1|5338061_5338910_-|XRE-family-transcriptional-regulator
MAVSPSSSAQQARQALASRLKDLCRNAGLTGAELAERCGWSRSKSSRIMNARTPPSADDIRAWCRACGAEEQTEDLLASLRTAEGMWVTWRRMERAGLKQAQQARLPLYQRTHRFRSYSSWLVPGMIQTQPYTTAALRAIQRRRGLVDDVADAVAARMERQRVLSGRDRQFAFLVEESVIRSGIGGPEVMSGQLEHLIAVASRPNVSLGVVPMRPDRERWPVEGFWIYDSTQVNVELVSGYLTITQPSEVAMYADTFAELSQLAVYGAKARALINDAMERLR
>NZ_LN997842.1|WP_094373466.1|5336609_5337806_-|methyltransferase-domain-containing-protein
MISDALRTDRPGRTALGRVLLESGVLSSDWAPTFAAVDRATFLPELMWPYDMTARASVAVDRREDPDGWYAAVDSDVPIVTQWDDGAHRGPGPGRLATSSSSMPSVVYALLRDLDLAEGMRVLDVGTGTGETAGALAHRLGSGNVTTVEVDGTVSAAARERLCGLGLYPEVVVGDGFEGHLGSAPYDRILATVGIRRVPSAWIRQLRPGGVILAPWGTSFGNGDAMVRLEVEGEAAVGSFTRCVEFMKLRAQRGPAVDHGGYLAAGPLEDAERSATPLTEEEIVTGPFTDLPFVLGLRVPHCRQAVADRREGARPVWFYGLTDRSWACVMFRGGERHASVWQSGPRRLWDEVADAYRWWQERGSPDVTRFGLTVDADGRQHAWLDDPANERWPVQHDA
>NZ_LN997842.1|WP_059251259.1|5335338_5336589_+|hypothetical-protein
MTNQPYQGGPHEGYDPYQQQWPTHEAQYPQPGHDPELTQQWQGQTWETQTHAPVQAAETAYLPRQDQQPAYPHQYQQPHHQDPHQDPQQYGQPHAGPYTDAHAGPYADAHAGPYTDAHAGVYAPEPAPAPAAYEPTPAPPAEPSAGPSAEAEPEYGPATLAGNARITDAQRARLEGRSPIIEPGMQPALLTAVLGLLLAAAAPIASYALVVPLVVLQAVTAAGWFRLNGMWPARQGIALAFAGALTADVAVLAAGRDHALVAILGPLGLWVLLSLVLQLRSHASPDERMYGLMATVVSAALAVLATGYLAAGADAVSVGAAAAAVAVLARALPLPTPASVVVALLAAAGAGIAAGGMTDLGSKGAFLGAAAGACALIGHRVASYDYPSRFVHFTAGVALPLSAAAPAVWVLGRALG
>NZ_LN997842.1|WP_059251257.1|5335080_5335335_+|molybdopterin-synthase-sulfur-carrier-subunit
MPQVTVRYWAAAKAAAQVAEEPYEADTLADALAAVRARHPGELTRVLQRCSFLVDGDPVGTRAHETVRLAEGGTVEVLPPFAGG
>NZ_LN997842.1|WP_059251255.1|5334329_5334989_+|alpha/beta-fold-hydrolase
MFVIAHGFTGDVDRPHLRRVADVLRGYGAVVTFSFRGHGRSGGRSTVGDKEVLDLAAAVEWARGLGHPRVATVGFSMGGSVVLRHAALYGGTDAVVSVSAPARWYYRGTAPMRRLHWLVTRPEGRLVGRYGLRTRIHHRDWDPVPLSPVQSVPRIAPTPLLIVHGDRDGYFPLDHPRMLAEAAGDHGELWVEPGMGHAEHAADDALMARIGAWVVRAAG
>NZ_LN997842.1|WP_059251254.1|5333170_5333950_-|response-regulator-transcription-factor
MSSLLLLTNALQPSTEVLPALGLLLHNVRVAPAEGPALVDTPGADVILVDGRRDLPQVRSLCQLLRSTGPGCPLLLVVTEGGLAAVTADWGIDDVLLDTAGPAEVEARLRLAMGRQQIVNDDSPMEIRNGDLSVDEATYSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYDYFGGTRTVDVHVRRLRAKLGPEHESLIGTVRNVGYRFVTPEKTDRSAEEAKAKAGRAKAEDADAPAVLDGTEVHAEA
>NZ_LN997842.1|WP_079081065.1|5332040_5333063_-|LacI-family-transcriptional-regulator
MAKVTRDDVARLAGTSTAVVSYVINNGPRPVAPATRERVLAAIKELGYRPDRVAQAMASRRTDLIGLIIPDARQPFFGEMAHAVEQAASERGKMVLVGNTDYIGEREVHYLRAFLGMRVSGLILVSHALNDLAAAEIDAWDARVVLLHERPEAIDDVAVVTDDLGGAQLAVRHLLEHGYEYVACMGGTAETPAVGDPVSDHVEGWKRAMAEAGLPTAGRLFEAPYNRYDAYRVALDVLSGPDRPPAIFCSTDDQAIGLLRAARELRIDVPGQLAVAGFDDIKEAALADPPLTTVASDRSAMARAAVDLVLDDGLRIAGSRRERLKTFPSRLVVRTSCGCV
>NZ_LN997842.1|WP_059251250.1|5330838_5331837_-|trypsin-like-serine-protease
MTESQGTYEQPYSSSAPSAAPVDPAWPPPPPYEPAAPGAGPARKRTRGPMALLAAVAIVAAAIGGGTAYAFQELTGKGTAAVAGSSTTVVPSSKKGDVAAIAAAVSPSVVEIRATLAGGSSTGSGVIITSDGEIVTNNHVVSGATSIKVRTSDGKSYTAEVVGTDSSKDLALIKLNGASGLKPAALGDSSGVQVGDTVVAIGSPEGLTGTVTSGIVSALNRDVTVSTDENQGQGQGGDGQWPFQFGGREFNGDTGSSTTTYKAIQTDASLNPGNSGGALIDANGRVIGINSAMYAGAQASSSSDAGSIGLGFAIPIDTVKSDLAKLRAGSRS
>NZ_LN997842.1|WP_059251265.1|5340050_5340893_-|XRE-family-transcriptional-regulator
MPQRLVITGRSQEPRGRFAQELRRLRIERGLSLRELAKAVGWDASLFSKMENGQTLGGPEVVQALDQFYGTPGLLVTLWELAVADPTQFKEQYRRYMVLESEALSLWHYGATTIHGLLQTAGYAREALAAGGIEGEKLEQQVEARLGRQQLLEGGNAPPFRTILSEAALRTSLRETQAWREQLEYLLEAAERPNITLQVIPFGMGLHGLVNTEVTYLRLPGGRTVAHTENDIHGELVEEDGRVERLQRTYDAVRDLALPPAESRKFVLRMLEEVPCEPST
>NZ_LN997842.1|WP_059251267.1|5341058_5341466_+|hypothetical-protein
MTAESTSESHEPGRLLYDPATDQVGEYRDRAGPYVMLRPVGGGVEWQADPAAVRPATDRERLGAGVRAANHRTRSLPSLPPPLDEASRPPRPVPGCAACLALAERREAARAAYDRSAETDANVLLRQHRRKEHRA
>NZ_LN997842.1|WP_079081066.1|5341462_5341738_+|hypothetical-protein
MTAAENGAPREEAGPWPAYALPPFHPGYHPGARGAPEASVPAPAPPRRTAQPRRRLRRRSADGAAVSGLLAALCVAALLAAVGLAAVRTRC
>NZ_LN997842.1|WP_004000115.1|5341838_5342129_-|DUF1416-domain-containing-protein
MCGAKAGGPDASTIKPGETTIQGQVTRDGEPVTGYVRLLDSTGEFTAEVPTSATGQFRFYAAEGTWTVRALVPGATADRTVVVAEKGALAEVAIAV
>NZ_LN997842.1|WP_059251269.1|5342165_5343011_-|sulfurtransferase
MSRSDVLVDADWLQEHLDDPTIAIVEVDEDTSAYEKNHIKNAIRIDWTKDLQDPVRRDFIDQEGFEKLLSEKGIANDHTVVLYGGNNNWFASYAYWYFKLYGHENVKLLDGGRKKWELDARELVPGDEVPERAKTDYKAKPQDTSIRAFRDDVVAAIGSQNLVDVRSPDEFSGKLLAPAHLPQEQSQRPGHVPTARNIPWSKNANDDGTFKSDEELKALYAEENVDLAKDTIAYCRIGERSALTWFVLHELLGVENVKNYDGSWTEYGSLVGVPIELGANK
>NZ_LN997842.1|WP_059251271.1|5343435_5344173_-|DUF2993-domain-containing-protein
MRALRILLIIAVILGGLFVIVDRVAVHFAEGEAADKLKATENLASTPDVNIKGFPFLTQVAGGSLDDVEVSIEDYEAATGKAGRTIRIDDLKADMKGVEFSGDYSSATAATATGTATVSYAELLKTAKSEPTEVAPGVTARVVGLSDGGNGKIKVAVEGTVSSLGLKQTVSVLSSVSVVNNKVEVHADSLPKLGAAAIAEDRVREITDFQQAIDQLPGGIKLDKVQAAPDGVEISVKGTDVKLAG
>NZ_LN997842.1|WP_107118006.1|5344259_5344568_+|DUF3099-domain-containing-protein
MWISCDRARRSYPVSMYARRRHVYFAMMGTCIGLFVLAWGVVRLWSVPAAVGLCVVAMVIPPVAAMIANRRGPEDRWWDDPSGDAQSDEWWDELDGKKRPRP
>NZ_LN997842.1|WP_059251275.1|5344603_5345074_+|hypothetical-protein
MDTAELQQRLDEIADRAVVHHGYTTYMRDYEVIVHMTADPRTGVPPAHLRYLFRHCVRARCETTVLPDTWRVSLDDRLLDLDTADGLDGYVWGVGCHSVWETGLLPESAEARRWAQVLGTDVHEVRIETDAHDLTLLFSELEVSEVPTGYAPFVAD
>NZ_LN997842.1|WP_059251278.1|5345082_5345445_-|sulfur-reduction-protein-DsrE
MAKKLVIKVTAGADAPERCSQAFTVAAVAVASGVEVSLWLTGESSWFALPGRAAEFELPHAAPLPDLLDSVLAAGRVTLCTQCAARREITEKDVVEGVRIAGAQVFVQEALAEDTQALVY
>NZ_LN997842.1|WP_003974792.1|5345556_5345655_+|membrane-protein
MEIFFEALLVLVCVGVLAFAGLTVKKLYQGQR

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Crispr_ID: NZ_LN997842_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN997842_9

5487643-5487736

Orphan

Consensus_repeat	Method
CGGGGTGAAGCGGGGCGCACGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN997842_9

>merge|NZ_LN997842|9|5487643-5487736|CRISPRCasFinder
CGGGGTGAAGCGGGGCGCACGCTCGGGGTGAGACGCGACAGGCCCTCGGGCCGAAGCGGGGGCGCACGCTCGGGGTGAAGCGGGGCGCGCGCTC

>NZ_LN997842|9|9|5487643-5487736|CRISPRCasFinder
CGGGGTGAAGCGGGGCGCACGCTC	GGGGTGAGACGCGACAGGCCCTCGGGCCGAAGCGGGGGCGCACGCT
CGGGGTGAAGCGGGGCGCGCGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN997842.1\|WP_059251483.1\|5477350_5478871_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225443
NZ_LN997842.1\|WP_059251493.1\|5487856_5489467_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|312032
NZ_LN997842.1\|WP_059251497.1\|5491145_5491349_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|378935
NZ_LN997842.1\|WP_094373442.1\|5495777_5497853_-\|sporulation-protein-SsgA	unknown	unknown	gnl\|CDD\|224588
NZ_LN997842.1\|WP_059251502.1\|5495115_5495610_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059251487.1\|5479842_5482677_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
NZ_LN997842.1\|WP_059251475.1\|5472800_5473142_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|273042
NZ_LN997842.1\|WP_059251477.1\|5473338_5473773_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379279
NZ_LN997842.1\|WP_059251473.1\|5468923_5469274_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059251495.1\|5489696_5491082_-\|integrase	unknown	unknown	gnl\|CDD\|271189
NZ_LN997842.1\|WP_079081081.1\|5494172_5494574_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|100107
NZ_LN997842.1\|WP_059251479.1\|5474059_5476465_+\|sodium-translocating-pyrophosphatase	unknown	unknown	gnl\|CDD\|234827
NZ_LN997842.1\|WP_059251489.1\|5483018_5486369_+\|dTMP-kinase	unknown	unknown	gnl\|CDD\|234814
NZ_LN997842.1\|WP_059255145.1\|5491858_5493334_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059251471.1\|5468700_5468901_+\|DUF4244-domain-containing-protein	unknown	unknown	gnl\|CDD\|379429
NZ_LN997842.1\|WP_059251481.1\|5476677_5477289_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059251505.1\|5497864_5498401_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059251499.1\|5493336_5494176_-\|DNA-primase	unknown	unknown	gnl\|CDD\|214927
NZ_LN997842.1\|WP_059255146.1\|5494657_5494918_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_079081342.1\|5469438_5469990_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274799

Protein	Function_ID	Function_description	E-value
NZ_LN997842.1\|WP_059251483.1\|5477350_5478871_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225443	COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis].	5.66949e-18
NZ_LN997842.1\|WP_059251493.1\|5487856_5489467_+\|alpha/beta-hydrolase	gnl\|CDD\|312032	pfam08386, Abhydrolase_4, TAP-like protein. This is a family of putative bacterial peptidases and hydrolases that bear similarity to a tripeptidyl aminopeptidase isolated from Streptomyces lividans. A member of this family is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterized from Propionibacterium freudenreichii.	7.32616e-35
NZ_LN997842.1\|WP_059251497.1\|5491145_5491349_-\|DNA-binding-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	3.19215e-12
NZ_LN997842.1\|WP_094373442.1\|5495777_5497853_-\|sporulation-protein-SsgA	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	0.000133622
NZ_LN997842.1\|WP_059251487.1\|5479842_5482677_+\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NZ_LN997842.1\|WP_059251475.1\|5472800_5473142_+\|STAS-domain-containing-protein	gnl\|CDD\|273042	TIGR00377, Anti-sigma_F_factor_antagonist, anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins. [Regulatory functions, Protein interactions].	2.26749e-33
NZ_LN997842.1\|WP_059251477.1\|5473338_5473773_+\|ATP-binding-protein	gnl\|CDD\|379279	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain.	7.98934e-28
NZ_LN997842.1\|WP_059251495.1\|5489696_5491082_-\|integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.29966e-17
NZ_LN997842.1\|WP_079081081.1\|5494172_5494574_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|100107	cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).	0.00525281
NZ_LN997842.1\|WP_059251479.1\|5474059_5476465_+\|sodium-translocating-pyrophosphatase	gnl\|CDD\|234827	PRK00733, hppA, membrane-bound proton-translocating pyrophosphatase; Validated.	0
NZ_LN997842.1\|WP_059251489.1\|5483018_5486369_+\|dTMP-kinase	gnl\|CDD\|234814	PRK00698, tmk, thymidylate kinase; Validated.	1.15179e-82
NZ_LN997842.1\|WP_059251499.1\|5493336_5494176_-\|DNA-primase	gnl\|CDD\|214927	smart00943, Prim-Pol, Bifunctional DNA primase/polymerase, N-terminal. Members of this family adopt a structure consisting of a core of antiparallel beta sheets. They are found in various bacterial hypothetical proteins, and have been shown to harbour both primase and polymerase activities.	1.31183e-15
NZ_LN997842.1\|WP_059251471.1\|5468700_5468901_+\|DUF4244-domain-containing-protein	gnl\|CDD\|379429	pfam14029, DUF4244, Protein of unknown function (DUF4244). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 66 and 95 amino acids in length. There is a conserved EYA sequence motif.	2.82136e-15
NZ_LN997842.1\|WP_079081342.1\|5469438_5469990_+\|hypothetical-protein	gnl\|CDD\|274799	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein. Members of this small, highly hydrophobic protein family occur in a pilus/secretion-like region that usually is next to an uncharacterized DEAH-box helicase, in Actinobacteria. Members show sequence similarity to the TadE-like family described by pfam07811. The function is unknown. [Unknown function, General].	1.49087e-13

>NZ_LN997842.1|WP_059251489.1|5483018_5486369_+|dTMP-kinase
MTRAEQPTAHPTAPDDALVADSRERAVRSLLRRPQLRRLWSAQLVSGVGDTLSLLVLVLLVLQAAIAEGAFGGGYRGVAFAVATVFAARILAALLFGAVLLGPLTSLTAQEGPLDRRWTMVGADGVRAALLIIAPLWIDWTPDNALAVLLVTAFVTGVAERLWTVCRESAAPALLPAPPPEGATVRPLPDHLDALRRLSLRTTFLAVPLAAATLLVAALLNNLLGTGMDWFDQHQAALGSYVAAGLFAASLSVLTSLALPDTRTPRPRSPLEGLRRPRTGTGVDKGRTGAIPLLVPACAGVAGAVAAAVAVCVLHAKDLGGGPVLYGLLVLGLTGGVAVGIRTAPALLPSLSRRRLLALAIAVTGIALLAAGLVPDVTTVLLIVTLAGTGAGVAANTGHTLLDQETEDFRRARTTEHLHAVVRVFIALGALIAPLVAALIGPHRLENGKFVFAHGGAAFTLMLVGALLLPVAALVLAKVDDRSGVPLRQDLKDALLGGDDPVTAPAARGFFIALEGGDGAGKSTQAEALAEWIRAKGHEVVLTREPGATPVGKRLRSILLDVSSAGLSHRAEALLYAADRAEHVDTVVRPALERGAVVISDRYIDSSVAYQGAGRDLSPTEIARINRWATNGLVPHLTVLLDVSPETARERFTEAPDRLESEPAEFHARVRAGFLTLAASDPGRYLVVDAGQEPEAVTTVIRHRLDIVLPLSEAEIKAQEEARRKAEEEARRKAEEEAARKAEEERLERERQEQLAKLRAEEEERKRRELEEAQRREAERQAEEARQRAEEARRRAEEERQRLLAEEKARAEEEARRRAEEERRRKQAEEEARLRAEEEARQARLRAEEEARRLEAQRKAEEALLRAEEARRQAAEAAAAADAAARRPSTPLPAAPGVTPDAATVPTPVVSPKADPRGTDARGTDTRGTDEATTVLRPVREERGGSAGSARDAHSDSEVTAELPQPPAPSRPAEETAVLPRVAPGAADETAVLPPVPAEETAELPSVAPGAADETAVLPPVRSDDPADRVPPGFFRDERPAAGPDGSEARTREMPQIEADGTPRSRPRPDWAEETPLDDLPTLADELLGSYDEGEYGDQGDSEERRGRGRGRGRRG
>NZ_LN997842.1|WP_059251487.1|5479842_5482677_+|type-I-DNA-topoisomerase
MSPTSETAQGGRRLVIVESPAKAKTIKGYLGPGYTVEASVGHIRDLPNGAAEVPEKYTGEVRRLGVDVEHEFQPIYVINADKKAQVKKLKDLLKDSDELFLATDEDREGEAIAWHLQEVLKPKIPVKRMVFHEITKDAIREAVANPRQLNQKLVDAQETRRILDRLYGYEVSPVLWKKVMPRLSAGRVQSVATRLVVERERERIAFRSAEYWDLTGTFATGRAGDSSDPSSLVARLQTVDGRRIAQGRDFDSVGQLKSANILHLDEATARALAAALENTRFSVRSVESKPYRRSPYAPFRTTTLQQEASRKLGFGAKATMQIAQKLYENGYITYMRTDSTTLSDTAIAAARAQVTQLYGAEYLPATPRVYAAKVKNAQEAHEAIRPSGDRFRTPAETGLTGDQFKLYELIWKRTVASQMKDATGNSVTVKIGGTAADGRDVEFSASGKTITFHGFLKAYVEGADDPNAELDDRERRLPQVAEGDALSAEEITADGHATKPPARYTEASLVKELEEREIGRPSTYASIIGTILDRGYVFKKGTALVPSFLSFAVVNLLEKHFGRLVDYDFTAKMEDDLDRIAAGEAQAVPWLKRFYFGEGHDGVGSAAEAGNGDGDHLGGLKELVTDLGAIDAREVSSFPVGNGIVLRVGRYGPYIERGEKDTEQHQRADIPDDLAPDELSVELAEELLAKPSGDFELGTDPATGHTIVAKDGRYGPYVTEVLPEGTPKTGKNAVKPRTASLFKSMSLDTVTLEDALRLMSLPRVVGTDADGVEITAQNGRYGPYLKKGTDSRSLQSEDQIFTITLEEAQAIYAQPKQRGRAAAKPPLKELGADPVSGKPVVVKDGRFGPYVTDGETNATLRSGDSVETITPERGFELLAEKRAKGPAKKTAKKAAAKKTAPAKKTAAKKTAAKKTTAAAKKTTAKKTTAKKATASKATASDTED
>NZ_LN997842.1|WP_059251483.1|5477350_5478871_+|class-I-SAM-dependent-methyltransferase
MTDSGLAPLPASDRPDIAARLRDALLAASFTADGLLDLLGAAAYAALARSETVPALRVTRGDSPLETLVRLFLLQQPVPHARVAAVLPVEEALEAGWLTRVGGDEVAATVDVRPYGGPGGEDWFIVSDLGCAVGGAGGIGQRAEGVVLGVGGASTTLAGITVRTPVAAALDLGTGSGIQALHAAQHATRVTATDLNPRALHITALTLALSGAPAADLREGSLFEPVRNDETFDLIVSNPPFVISPRARLTYRDGGMGGDDLCRSLVQQAGERLNEGGFAQFLANWQHVAGEDWQDRLRSWVPRGCDAWIVQREVQDITQYAELWLRDSGDHRGDPAEYQARYDAWLDEFEARKVKAVGFGWITLRRTGSAEPVVTVEEWPHPVEQPLGEAIRAHFDRLDYLRTHDDAALLDSHFKLAAEVVQEQVGLPGAEDPEHVVLRQHRGMRRATKVDTVGAGFAGVCDGTLSAGRILDAIAQLVGEDPVLLRDRTPAQIRLLVEQGFLEPVR
>NZ_LN997842.1|WP_059251481.1|5476677_5477289_+|hypothetical-protein
MNKKLAAALSGGAVLVVAVSGCSGSGEEGPDPKLVSWAKTVCDAVPAPNAKIRSANAAIAAIATDSNLPPKSAQKTYAEAFQDMADGYKTLANALDTAGAPPGVEGGAKLQRDAAKNLSGLATSYAELKKKVDGLDTKDQGKFARGLKEVASQSKEIGKQSDSGTQALKRLEQEDVKKAMAKQPSCKVAASASASAPAPATAG
>NZ_LN997842.1|WP_059251479.1|5474059_5476465_+|sodium-translocating-pyrophosphatase
MAGLSTPHQLGHPSSLAAAVLTDDNRIIVAVIAAVALAALVVAGILVRQVLAAGEGTDSMKRIAEAVQEGAKAYLARQLRTLGVFAVVVFFLLMLLPADDWNQRAGRSVFFLIGAAFSAATGYIGMWLAVRSNVRVAAAAREATPAEGEPEKDLTTVSHTAMKIAFRTGGVVGMFTVGLGLLGASCVVLVYAADAPKVLEGFGLGAALIAMFMRVGGGIFTKAADVGADLVGKVEQGIPEDDPRNAATIADNVGDNVGDCAGMAADLFESYAVTLVAALILGKAAFGDSGLAFPLLVPAIGVITAMIGIFAVAPRRADRSGMTAINRGFFISAVISLALVAVAVFLYLPSKYADLDGVTDAAIRAKDGDPRILALVAVAIGILLAAVIQQLTGYFTETNRRPVRDIGKTSLTGPATVVLSGISVGLESAVYTALLIGLSVYGAFLLGGTSIMLALFAVALAGTGLLTTVGVIVAMDTFGPVSDNAQGIAEMSGDVEGAGAQVLTNLDAVGNTTKAITKGIAIATAVLAASALFGSYRDAITTNVQDVGAKLTGPGSPLSLSLDISQPNNLVGLIAGAAVVFLFSGLAINAVSRSAGSVVFEVRRQFREKPGIMDFSEKPEYGKVVDICTKDALRELATPGLLAVMAPIFIGFTLGVGALGSYLAGAIGAGTLMAVFLANSGGAWDNAKKLVEDGHHGGKGSEAHAATVIGDTVGDPFKDTAGPAINPLLKVMNLVSLLIAPAVIKFSYGDDKNLGVRIGIAVLALLVIVVAVYISKRRGIAVGDDESTERVANSPDAAVVS
>NZ_LN997842.1|WP_059251477.1|5473338_5473773_+|ATP-binding-protein
MATVELRFSALPEHVRTARLVAAAVARRAGVDEAVLDEVRLAVGEACSRAVGLHQISGVTAPVKVALIEEEKQFSIEVGDEAPHAAPGGDAAGAGQDGDAEVEEDEMGLAVISGLVDDVEVTTGQNGGLIRMTWPTAPPATALA
>NZ_LN997842.1|WP_059251475.1|5472800_5473142_+|STAS-domain-containing-protein
MDLSLSTRTVGDRTVVEVGGEIDVYTAPKLREQLVELVNDGNFHLVVNMEGVDFLDSTGLGVLVGGLKRVRAHEGSLRLVCNQERILKIFRITGLTKVFPIHTSVEEAVAATD
>NZ_LN997842.1|WP_079081342.1|5469438_5469990_+|hypothetical-protein
MGRRPDADRGSATVWSLGAIAVLCVVFGAVLALGQAVVVRHRAAGGADLAALAAADHWSEGGAAACARAERLAAAQGVRLVRCAIVGDTSDVTAAAGRGPFAAEVRARAGPPGPVAPAAPDGAGSVPPAVAPGRAGNALPAAPGAPDAPLPPAAPDSAGAVSVAAPDGADALVPGRAGRWRGR
>NZ_LN997842.1|WP_059251473.1|5468923_5469274_+|hypothetical-protein
MTAEAAVVLSVLVAFTMALVWGLLLVAAQIECVDAARAGARAAARQDPADAVVTVTREAAPPGARVTVAREGDRVRVTVVAEPPLLSGLPFEVREEAVALAEETVGQAPGAGEGEP
>NZ_LN997842.1|WP_059251471.1|5468700_5468901_+|DUF4244-domain-containing-protein
MFSKLRKAAVRLRGACRQDAGMVTSEYAMGIIAAVAFAVVLYKVVSSGQVQAELGAIVKRALSARM
>NZ_LN997842.1|WP_059251493.1|5487856_5489467_+|alpha/beta-hydrolase
MHTRPTPRPRRHRRTRARSVIRTTAGFLAAAALLVSACSAGNSTTSAGGAVEAALAELPRSTPSALTSYYGQRLRWRDCGAPGFQCATMKAPLDYDDPAAGDVRLAVARKKATGKGKPLGSLMVNPGGPGGSAVGYLQQYAGVGYPERVRARYDMVAMDPRGVARSEPVECLSGRQMDAYTQTDQTPDDEKERDALVAADRKFAEGCGTRSARLLRHVSTVEAARDMDILRAVLGDRKLTYVGASYGTFLGATYAGLFPRRVGRMVLDGAMDPSLDARRLNLDQTAGFETAFQAFAKDCVRHADCPLGGRGTTPARVGDRLQAFFRKVDAHPVPTGDADGRKLGEALATTGVIASMYDEGAWGQLRRALTSAMKKNDGAGLLSLADSYYERDASGRYSNLMMANAAVNCLDLPPAFTGPEDVQKALPAFEKASPVFGPALAWATLNCTYWPVRATGEPHRIEAKGAAPIVVVGTVRDPATPYRWAKSLAAQLSSARLLTYDGDGHTAYGRGSGCIDSAIDTYLLRGTPPPPGKRCS
>NZ_LN997842.1|WP_059251495.1|5489696_5491082_-|integrase
MSPRKANMESSIYLGNDGRWHGRVTMGLKDDGSPDRRHRSGRTETEVRRKVRELEALRDKGRAPQAGRKPTVEQWMTTYLTDIASLKLKPRSLDDYWSKTRNHIIPGIGQHRLDKLQPEHLERMYRTLLDAGHADSHVLKVHRILSRALKIAHRRRLVGENVATLVDPPTVDETEANPFTVEEAKAFLEAASKRPTFMRWVVGVGMGFRQGEALGFRWKYVDLDAELFHPQWQLQRLTWKHGCADPHACGGRLHRFARCPPNCRTHKNYKRGCPKPCTKNCTKHASACPERKGGGLVFTRPKTKKSRNSVPIPPPFIPYLWEHRAQQEALRAEAGDAWQEHDVVFSRPDGRPIDPRDDWEEFKELLAEAGIEDRRQHDGSRHTAGTILNELGVDLPTIMEVLRHSQIAQTRRYVKGRSHLAKAAMRRMGDTLLPGQKSGTETKTETTDSRAARARRRRRVR
>NZ_LN997842.1|WP_059251497.1|5491145_5491349_-|DNA-binding-protein
MSTVTAAPVDRLLYTPEQAAEALSIGRSTLYELMADGVVKYIKLGRCRRIRRADLEAYVANLVPLPN
>NZ_LN997842.1|WP_059255145.1|5491858_5493334_-|hypothetical-protein
MSDDEKNPAREVITDYAQQHFRYFRTADGTVYAQRNGHPVARPIRSQGTTGSHRQELMVGLYRDGIGVFNGTALKEALDLIEALALTEDVQTVHIRVAPGFDGATWLDLGRSDGQSVRIHPTGWDIAVPDPREVCWRRTQLTGELPIPAKETDGKGIDLLLRLTNFASADSECLAIAWLIGCLGPSVPVPAPFLTGPQGAGKSTAGRMLMRIIEGMSSDLRRAPKDEENLIAAVAAGWITALDNLSHMSPDLSDAMCCIVTGAENVKRALFTDGDVHRSRYRRPLLLTGIDVGVIRPDLAERLLPLRLERPKVRRTEAELWAEYAEVLPVILGSLLDLTVKVRAAQADIPTDLRMADFAHLCAQLDAATGLGALAAYRASLDDLNDDVIEGDLLAQTVLKYAAGLDTGAEQRMTSAEWLHCLTGLYSGEECRPLPKGWPTTGKVLSDRLKRLQPTLGARGVLIDWGRTRTARYIEMARPPAAPPHEQEPAF
>NZ_LN997842.1|WP_059251499.1|5493336_5494176_-|DNA-primase
MISTLVSTALRLAALGLPVLPLRKGKIPVGNCPDCKNSACGDRPHMKAAGTCRCPAPCHGWAAATTDPHVLTSPLWATAWQQAVAVAYHPAGAGLTVVDLDDESAITWARQTLPPTRTVTTTRGEHWIYQGTTRSVNAVREGVDIKSAMAYARYLGPGTGATAPLPDAVRALTVEKPPTVRPAPHLTVPVPAGDGQCPHRTPAYLERGIRMAEQRITEARSQVHATVYRTFLAVLSTHGRCGCLTDSHVERLFTAAQAKGESPRHCTDAWANARTRLGL
>NZ_LN997842.1|WP_079081081.1|5494172_5494574_-|class-I-SAM-dependent-methyltransferase
MTQPTLIRRVALTRPLRVLDAYCCIGGATAGYRLAFPGCHITGVDIQDQPDYCGDAFHQGDAIDFIRAHGHEYDLVHGSWPCERYATVTRWRGDPDAMGCTWMTNLEARKAVPPAYTHWIATQFLALEGRAAA
>NZ_LN997842.1|WP_059255146.1|5494657_5494918_-|hypothetical-protein
MPRLRFRIKTWPRRALILTDTPRPNCPKCEGDGGIGYDYGDPETGEYAGTDWEPCTCWHENRRWALLPLPRRPWRTPPGYSNEPPF
>NZ_LN997842.1|WP_059251502.1|5495115_5495610_-|hypothetical-protein
MPHPEQPSALPALTDTEAAAEARRIIADAYRPTPEMPIAYRDDTPLPTYGSTPPVVQPGTPPMSQRAVDAGRLMLTGGLATVPPGLVAIGLLIASEHADPTVIGMVCAAPAAVAVPVLAIARLLRRASGVVPDVHHHHYTGPVRQEHTTTHTRGLIARTHNDHR
>NZ_LN997842.1|WP_094373442.1|5495777_5497853_-|sporulation-protein-SsgA
MARNNSRRARHDFPDDGMLAFAGPGLLSGEGGGGSVRGYLLHRVKPHLPPWLAVGATGVAGALGHWRWADSAAAGVGLTLSSVLLTGATWWAGKATSQQRRLHSAITVAAGSAWLTAACLAGPTAGPLDDLFLMGGPVVALSWNVRMVLRRNDADPQGDGADKGLLEKVGLARAMLGTAKVEPNRVTAPVALAAGEQTNDDMAKSLGRIASALDLPTSAVRYNPDPDSSRRGELVIVPEDMLGDVVEWEGPSNLGGSIAEPLVIGRYDDGSPLQMWLPGDPEAGRNSTHVLVAGMSGSGKGDAALNLLTEILSRRDVIVWFSDPKAFQDFAPLRPGLDWAVEGGSPTEVMVAAVQAAIPARTRWLGAHGYRQWVPEAAEQQTSREHTCRPDGRPCGCPGMPFLVAWWEEAANTLRNMGDDAFTGITQEARSAGMAAFVSLQRPSYDQMSTSTRASLPSVIALGCDPRDEGFVLSDDVLAAGARPGAWGNRRPGYCYVVSPGIPEDRYASPGRTFRFTHRAVEVMELLAQWAQRNGATTDPVTAGAVSAVAGTAYTGRAQPGDEQPAPLRAVQEDEPMDNSGLLVDPEDAGIDPEADLPGSEQGDDTPIFGQETGRKPTPEEARQLFARALEEFESNGQMIVGPKDFMDWCERNNLSRPWVSARLKEAAENGRLEPTNTTGRWRIVPTLAAA
>NZ_LN997842.1|WP_059251505.1|5497864_5498401_-|hypothetical-protein
MASPTRNSSATDKGNKFTNAGAAAGGFIGGLGSSIAPPINITINRTQNNSAGSGGGRRPHAEALLPAPDFSSPAMVRQYCNTLRAAAVTLSIEVAMGAEIMKGVLAAVPDPEGRAFGSRIRAQKVARKMQRAADALRDAAKNAAACHSTFQQEYEEEINRVRHRARRPQQPVMNWAQQ

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Crispr_ID: NZ_LN997842_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN997842_10

5726642-5726739

Orphan

Consensus_repeat	Method
CCGTACATGTTCACGTTGTCGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN997842_10

>merge|NZ_LN997842|10|5726642-5726739|CRISPRCasFinder
CCGTACATGTTCACGTTGTCGCCGTAGTAGTAGGTGTTGCCGGTCATCGCGTGATCCCCACGTTTCCGTTGCCTCCGTACATGTTGACGTTGTCGCCG

>NZ_LN997842|10|10|5726642-5726739|CRISPRCasFinder
CCGTACATGTTCACGTTGTCGCCG	TAGTAGTAGGTGTTGCCGGTCATCGCGTGATCCCCACGTTTCCGTTGCCT
CCGTACATGTTGACGTTGTCGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN997842.1\|WP_059251860.1\|5735122_5735737_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_LN997842.1\|WP_059251845.1\|5728559_5730011_+\|menaquinone-biosynthesis-decarboxylase	unknown	unknown	gnl\|CDD\|163413
NZ_LN997842.1\|WP_059251820.1\|5715715_5716420_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_LN997842.1\|WP_059251852.1\|5732202_5733366_+\|aminofutalosine-synthase-MqnE	unknown	unknown	gnl\|CDD\|213851
NZ_LN997842.1\|WP_059251832.1\|5722727_5724275_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380492
NZ_LN997842.1\|WP_059251858.1\|5734746_5735055_+\|DUF4229-domain-containing-protein	unknown	unknown	gnl\|CDD\|379415
NZ_LN997842.1\|WP_059251824.1\|5717993_5718548_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_LN997842.1\|WP_059251836.1\|5724758_5726165_-\|acyltransferase-papA2	unknown	unknown	gnl\|CDD\|380462
NZ_LN997842.1\|WP_059251842.1\|5727758_5728250_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059251851.1\|5731708_5732164_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|214628
NZ_LN997842.1\|WP_059251849.1\|5730983_5731646_+\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|223241
NZ_LN997842.1\|WP_059251818.1\|5714399_5715719_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|234607
NZ_LN997842.1\|WP_059251828.1\|5719326_5721027_+\|cytochrome-c-biogenesis-protein-ResB	unknown	unknown	gnl\|CDD\|377471
NZ_LN997842.1\|WP_059251830.1\|5721023_5722136_+\|c-type-cytochrome-biogenesis-protein-CcsB	unknown	unknown	gnl\|CDD\|274447
NZ_LN997842.1\|WP_107118014.1\|5722278_5722731_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176908
NZ_LN997842.1\|WP_059251856.1\|5734140_5734665_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_LN997842.1\|WP_059251847.1\|5730007_5730904_+\|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|183814
NZ_LN997842.1\|WP_059251822.1\|5716575_5717859_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|200598
NZ_LN997842.1\|WP_059251826.1\|5718549_5719323_+\|cytochrome-C-biogenesis-protein-CcdA	unknown	unknown	gnl\|CDD\|280792
NZ_LN997842.1\|WP_059251854.1\|5733464_5734124_+\|DNA-polymerase	unknown	unknown	gnl\|CDD\|274850

Protein	Function_ID	Function_description	E-value
NZ_LN997842.1\|WP_059251860.1\|5735122_5735737_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.9344e-13
NZ_LN997842.1\|WP_059251845.1\|5728559_5730011_+\|menaquinone-biosynthesis-decarboxylase	gnl\|CDD\|163413	TIGR03701, mena_SCO4490, menaquinone biosynthesis decarboxylase, SCO4490 family. Members of this protein family are putative decarboxylases involved in a late stage of the alternative pathway for menaquinone, via futalosine, as in Streptomyces coelicolor and Helicobacter pylori. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	0
NZ_LN997842.1\|WP_059251820.1\|5715715_5716420_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.50765e-41
NZ_LN997842.1\|WP_059251852.1\|5732202_5733366_+\|aminofutalosine-synthase-MqnE	gnl\|CDD\|213851	TIGR03700, mena_SCO4494, putative menaquinone biosynthesis radical SAM enzyme, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	0
NZ_LN997842.1\|WP_059251832.1\|5722727_5724275_-\|hypothetical-protein	gnl\|CDD\|380492	cd06268, PBP1_ABC_transporter_LIVBP-like, periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.	3.24009e-06
NZ_LN997842.1\|WP_059251858.1\|5734746_5735055_+\|DUF4229-domain-containing-protein	gnl\|CDD\|379415	pfam14012, DUF4229, Protein of unknown function (DUF4229). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 95 and 122 amino acids in length.	1.394e-14
NZ_LN997842.1\|WP_059251856.1\|5734140_5734665_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.48302e-10
NZ_LN997842.1\|WP_059251836.1\|5724758_5726165_-\|acyltransferase-papA2	gnl\|CDD\|380462	cd19539, SgcC5_NRPS-like, SgcC5 is a non-ribosomal peptide synthetase (NRPS) condensation enzyme with ester- and amide- bond forming activity and similar C-domains of modular NRPSs. SgcC5 is a free-standing NRPS condensation enzyme (rather than a modular NRPS), which catalyzes the condensation between the SgcC2-tethered (S)-3-chloro-5-hydroxy-beta-tyrosine and (R)-1phenyl-1,2-ethanediol, forming an ester bond, during the synthesis of the chromoprotein enediyne antitumor antibiotic C-1027. It has some acceptor substrate promiscuity as it has been shown to also catalyze the formation of an amide bond between SgcC2-tethered (S)-3-chloro-5-hydroxy-beta-tyrosine and a mimic of the enediyne core acceptor substrate having an amine at its C-2 position. This subfamily also includes similar C-domains of modular NRPSs such as Penicillium chrysogenum N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase PCBAB. Condensation (C) domains of NRPSs normally catalyze peptide bond formation within (usually) large multi-modular enzymatic complexes. NRPS can use a large variety of acyl monomers (approximately 500 different possible monomer substrates as opposed to the 20 standard amino acids in ribosomal protein synthesis) to construct bioactive secondary metabolites of 2 to 18 units long (with various activities such as antibiotic, antifungal, antitumor and immunosuppression). There are various subtypes of C-domains such as the LCL-type which catalyzes peptide bond formation between two L-amino acids, the DCL-type which links an L-amino acid to the D-amino acid at the end of a growing peptide, starter C-domains which acylate the first amino acid with a beta-hydroxy carboxylic acid, and heterocyclization (Cyc) domains which catalyze both peptide bond formation and cyclization of Cys, Ser, or Thr residues. Typically, an NRPS module consists of an adenylation domain, a peptidyl carrier protein (PCP) domain (also known as thiolation (T) domain) and a C-domain. NRPS modules may also include specialized domains such as the terminal-module thioesterase (Te) domain that releases the product via hydrolysis or macrocyclization and any of various C-domain family members such as the epimerization (E) domain, the ester-bond forming C-domain, dual E/C (epimerization and condensation) domains, and the X-domain. C-domains typically have a conserved HHxxxD motif at the active site; mutations in this motif can abolish or diminish condensation activity.	4.97914e-21
NZ_LN997842.1\|WP_059251824.1\|5717993_5718548_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	2.12904e-44
NZ_LN997842.1\|WP_059251851.1\|5731708_5732164_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|214628	smart00344, HTH_ASNC, helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli).	6.54312e-37
NZ_LN997842.1\|WP_059251849.1\|5730983_5731646_+\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|223241	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism].	4.06931e-65
NZ_LN997842.1\|WP_059251818.1\|5714399_5715719_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NZ_LN997842.1\|WP_059251828.1\|5719326_5721027_+\|cytochrome-c-biogenesis-protein-ResB	gnl\|CDD\|377471	pfam05140, ResB, ResB-like family. This family includes both ResB and cytochrome c biogenesis proteins. Mutations in ResB indicate that they are essential for growth. ResB is predicted to be a transmembrane protein.	0
NZ_LN997842.1\|WP_059251830.1\|5721023_5722136_+\|c-type-cytochrome-biogenesis-protein-CcsB	gnl\|CDD\|274447	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair].	2.89233e-97
NZ_LN997842.1\|WP_107118014.1\|5722278_5722731_+\|hypothetical-protein	gnl\|CDD\|176908	cd08899, SRPBCC_CalC_Aha1-like_6, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	2.09184e-11
NZ_LN997842.1\|WP_059251847.1\|5730007_5730904_+\|4-hydroxybenzoate-octaprenyltransferase	gnl\|CDD\|183814	PRK12888, ubiA, 4-hydroxybenzoate octaprenyltransferase.	9.35936e-177
NZ_LN997842.1\|WP_059251822.1\|5716575_5717859_+\|hypothetical-protein	gnl\|CDD\|200598	cd10976, CE4_CDA_like_3, Putative catalytic domain of uncharacterized bacterial hypothetical proteins similar to insect chitin deacetylase-like proteins. The family includes many uncharacterized bacterial hypothetical proteins that show high sequence similarity to insect chitin deacetylase-like proteins. Chitin deacetylases (CDAs, EC 3.5.1.41) are secreted metalloproteins belonging to a family of extracellular chitin-modifying enzymes that catalyze the N-deacetylation of chitin, a beta-1,4-linked N-acetylglucosamine polymer, to form chitosan, a polymer of beta-(1,4)-linked d-glucosamine residues.	1.44252e-109
NZ_LN997842.1\|WP_059251826.1\|5718549_5719323_+\|cytochrome-C-biogenesis-protein-CcdA	gnl\|CDD\|280792	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region. This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.	4.41176e-43
NZ_LN997842.1\|WP_059251854.1\|5733464_5734124_+\|DNA-polymerase	gnl\|CDD\|274850	TIGR03914, SPO1_DNA_polymerase-related_protein, uracil-DNA glycosylase family domain. This model represents a clade within the uracil-DNA glycosylase superfamily. Among characterized proteins, it most closely resembles the Thermus thermophilus uracil-DNA glycosylase TTUDGA, which acts uracil (deamidated cytosine) in both single-stranded DNA and U/G pairs of double-stranded DNA. This domain may occur either as a stand-alone protein or as the C-terminal domain of a fusion with another domain that always pairs with a particular radical-SAM family protein.	6.03074e-82

>NZ_LN997842.1|WP_059251836.1|5724758_5726165_-|acyltransferase-papA2
MRITDIQRCEVRPGRLVEWTLSPATVAAATALPEDSRPPAYIQESHIRTAKCVRETGLFVPTWLGTAFDLPGPVDLDALERALHAWTLRHETLRSGFRWKGEELCRFTLDAADVSLHREEAGHFPDAAGLVRHLQDRFDTVADALRWPNLIYTAVVRDDGASVYMAFDHSNVDAYSLHRIPAEIQELYAAGPAGTEPGGPAPAASYIDFCEIERAGADGIDGRHAIVDRWREFIRRCDGTLPAFPVDLGLTPGGPLPRQQMLCEPLADADAAAAFEAYCRPYGGSLVGVLAATGLIVHELGGQPVYRTVVPFHTRVKSRWTDSVGWYVGGAPIEVPVGRTRGFPEALRAVRAELQANRSLARMPLARVLRLLGSDFRPTSPDLHSIVSYVDARAFPGAERWSGLKAYGLMRVSYGDQVCVWVNRLPEGLWLASRYPDTDIAAKTMRLYVERLRDRVASVADGSLPAVS
>NZ_LN997842.1|WP_059251832.1|5722727_5724275_-|hypothetical-protein
MARRGVGTWIREGVWEIPLRRYTALVLAAVLVAGLAVAVRAVLRDDPSCGPGVARPEGGDECVGVATGPYDFGQSRLRDVVRAIGRENDRLKPGGFVTVALLLPYTTASSTSLNDIRHQLMGAYLAQYQANHEANGQRPQIRLVLANPGATGAHWRPAVEQLAAMTTSADRLRAVVGVGQSTEPNKQAVKELTRQGIPVVGSTITADDLANGQRGRDPYPGLARVAPTNTDEARALASFAKVSAGRALLVYDKPGDPYTRTLQESFAALIKGSPYEPQPFTPPADRTEEGSTANTFRQITHLVCDTSRETDTILFAGRHTQLRQFINALGGRGCQDRRFTLLTGDEASYLTHEKDLDRGALRRNLAVRYTSLAHPDAWTKARERTGGSVADFAALRRLLADAARAPMGPIGPAALDDGQLIIGYDALRLAVHGIREAVPAGRSVPALTDVGLQWPQVKGSLRVAGASGWICLDVHGNPYDKAVPIVELTPQGGSRFVRIAWPEGKPPGKECLPPS
>NZ_LN997842.1|WP_107118014.1|5722278_5722731_+|hypothetical-protein
MSGSIAQGTSQTHGNTHILHFVVRLPRRMEDVWPALSTPDGLASWFTPADLLEGRLGGAVTLRGLGSGQVTAWDVDRVAEYTIEGAGRIRFHLERGGEDGSVLRFTHEFQGEEETEQNWRGRFERLIEIARSSHDLPGQPPAEPLPGQFT
>NZ_LN997842.1|WP_059251830.1|5721023_5722136_+|c-type-cytochrome-biogenesis-protein-CcsB
MTLAAATNEHLASISNTLIYSSMAVYTLAFFAYIAEWLFGSRSKVGRTAAALTADRGRTAGAPAVTVQRAGGTAVLERPKVVVRSASGARDVPDGPGAHGGDAQGDLYGRIAISLTALAFLVELGGVVARAASVERAPWGNMYEFNITFSTVAVGVYLALLALKKNVRWLGLFLITTVLLDLGLAVTVLYTASDQLVPALHSYWLYIHVSTAIFCGAVFYVGAVATILYLFKDAYENKLQAGGKPGSFATSVLERLPASASLDKFAYRVNAAVFPLWTFTIIAGAIWAGDAWGRYWNWDPKETWSFITWIAYACYLHARATAGWKGRKAAYLALIAFGCWLFNYYGVNIFVSGKHSYADVGLGVLRSTGF
>NZ_LN997842.1|WP_059251828.1|5719326_5721027_+|cytochrome-c-biogenesis-protein-ResB
MSKTDTDTGRDREDLGAAGSQLSTAPQEEQTSLPGLGVIGWARWFWRQLTSMRVALLLLLLLSLGAIPGSLIPQTGADPTKVEDFRAAHKTLAPVYDQLGLFHVYSSVWFSAIYILLFVSLIGCIVPRTWQFVGQLRGRPPAAPKRLTRLPAYTTWRTQADPEQVREAALALLKKHRFRAHVAGDAVAAEKGYLRELGNLVFHIALIVLLVAFASGQLYKSEGNVLMVEGDGFSNTLPMYDDFKSGSLFQTDDLVPFSFDLKDFKGTYEASGPNRGTPRTYEAKIRYSVGAYGKEKATTVKVNKPLEIDGSKVYLVSHGYAPVVTVRDGKGKVVFHAPVALLPLDGNVSSQGVVKVMDGYRDAKGKKEQLGFQAFFVPTFDAQSGTMLSQFPALLNPLLAVNAYHGDLGVNSGIPQSVYQLDKKHMKAFKDGKGQLLKKLLKPGDTLTLPNGAGSITFEKDIKEWAGFQIVQEPGGGWALGGAVAAILGLAASLFIQRRRVWVRAVRGADGVTVVEMAGLGRSESAKVPQELGDLAGNLYDQAPGAPDPDDDASESPVVPAEGAEK
>NZ_LN997842.1|WP_059251826.1|5718549_5719323_+|cytochrome-C-biogenesis-protein-CcdA
MSTLLTLAAETGRNSTVLNGALLVALPVAVLGGLVSFFSPCVLPLVPGYLSYVTGVAGTDLAEARRGRMATGAALFVLGFTAVFVSGGALFGFFGSTLQEYKDTLSKVLGVLMILMGVFFMGLMPWLTQREFRFHKRPATGLVGAPLLGALFGIGWTPCIGPTLASVVALSSQQASAGRGAVLTVAYCLGLGVPFVLTAIAFRKALGAFGWVKRHYVWVMRIGGTMMIVTGALLLTGAWDRLVQEMQTWSDGFTVGI
>NZ_LN997842.1|WP_059251824.1|5717993_5718548_+|TlpA-family-protein-disulfide-reductase
MAAVAALTLSACGKGGISGGGGDTNFVTGSNGIDTVPAGKRATAPDLSGKTIDGKTLDVADYKGKVVVINVWGSWCGPCRSEAQYFAKVSKEYQDKGVQFVGINTRDNSTTPAVAFEKEHGVEYPSLYDPTGKLMLRFKKGTLNPQLIPSTLIIDRHGKVAARALEALDDTTLLKMLKPVLAEK
>NZ_LN997842.1|WP_059251822.1|5716575_5717859_+|hypothetical-protein
MRTFSRTLSRRGVLGLGAGAAAAASLAGCGGSTSSDGAGRPDGSRTQQGSKGETRPARPIGDGSTSFTGKQPHQPAEPEPLEPGQTPPQFVIFSWDGAGEVGNGLFPRFLDLAKEHGASMTFFLSGLYLLPESKKRLYEPPNNPRGASDIGYLTDDHIKATLKNVRRAWLEGHEIGTHFNGHFCAGSGTVGNWTPQQWDSEIRQAKAFVKEWRTNTGWTDLPSLPFDYDKELVGGRTPCLLGQNNLLPTAKKLGWRYDASSPGGRQTWPDKKLGIWDLPLQQIPFPGRSFEVLSMDYNMLANQSVNSTKAPAHNYPGWRKQSAQAYIAGFKRAFETNRAPFFIGNHFEQWNGGIYMDAVEEAFQHIAREKEKGADVRLVSFRQFVDWMDVQKPEVLAKLRTLGVGQQPTGGWKEFLRDTKSASSNAA
>NZ_LN997842.1|WP_059251820.1|5715715_5716420_+|histidine-phosphatase-family-protein
MSTSPENKDITVVHVMRHGEVENPDGILYGRLPGYHLSELGRQMAERVAEHLAGRDVTYVCASPLERAQETATPIAKAHGLDLDTDARLIEADNVFQGKTFGVGDGALQRPGNWKHLVNPFRPSWGEPYVDQVVRMMGALNAAKDRARGHEAVLVSHQLPIWIVRSYVERRRLWHDPRKRQCTLASLTTFTYQGDRIVSVGYSEPAIDLVPVHLRAGAKPQKGKGTAQGKAFGA
>NZ_LN997842.1|WP_059251818.1|5714399_5715719_+|glutamate-1-semialdehyde-2,1-aminomutase
MSETPYPYDAPVSQALFDRASVVTPGGVNSPVRAFRAVGGTPRFMVSGKGAYLTDADGREYVDLVCSWGPMILGHSHPEVIAAVQEAVARGTSFGTPGEGEVALAEEIVARVEPVEQVRLVSSGTEATMSAIRLARGFTRRSKVIKFAGCYHGHVDSLLAAAGSGVATFALPDTPGVTGAQAGDTIVLPYNDLEAVQEAFHRHPGEIACVITEASPGNMGVVPPDPGFNQGLKDACRKNGALFISDEVMTGFRTSRAGWYGVEGVKPDLMTFGKVMGGGFPAAAFGGRADVMAHLAPAGPVYQAGTLSGNPVATAAGLAQLRLLDDAAYDTVDAVSAQIQGLVTEALSKEGVAHRLQTASNMFSVFFTDRQVRDYEDAKRQESYRFTAFFHSMLANGVYLPPSSFESWFVSTAHDERAIQKIADALPAAARAAAEATAE
>NZ_LN997842.1|WP_059251842.1|5727758_5728250_+|hypothetical-protein
MTLLFKTTGGSSTEVAAKYVEKSEPISVTGLLLSVLRRDDGLVEVRLRPDSGSVTPNRALLREPARTGAGAGPAPDVPLSEMGEFVMGTGRFEARGSRGETLVMRAPCSDGGPAAHLRVVLRPHPGPEAAGGPVPGALPGQGDQLGSRGPGDRAPAPGGRLPP
>NZ_LN997842.1|WP_059251845.1|5728559_5730011_+|menaquinone-biosynthesis-decarboxylase
MAYDDLRSLLRALEREGDLKRIKAEVDPYLEVGEIVDRVQKSGGPALLFENVRGSDMPLAMNVYGTDRRLLKALGLKSYGEISEKIGGLLRPELPHGFVGVREAFGKLGAMAHVPPKKVKDAPVQEVVLQGDDVDLDRLPALFTWPKDGGSFFNLGLTHTKDPETGVRNLGLYRLQRHDQRTIGMHWQIHKDSRNHYQVAARRGERLPVAIAFGCPPAVTYASTAPLPGDIDEYLFAGFLAGKRIEMVDCKTVPLQVPAHAEVVLEGWLEPGEMLPEGPFGDHTGFYTPQEPFPALRIDCVTMRRRPLLQSIVVGRPPTEDGPLGRATERFFLPLLKIIVPDIVDYHLPESGGFHNCAIVSIDKKYPKHAQKVMHAIWGAHMMSLTKLIVVVDADCDVHDLHEVAWRALGNTDYARDLTVVEGPVDHLDHASYQQFWGGKAGIDATKKWPEEGYTRDGGWPDMVESDPETAAKVDRRWKEYGL
>NZ_LN997842.1|WP_059251847.1|5730007_5730904_+|4-hydroxybenzoate-octaprenyltransferase
MTTAAISQPGRTRAFLRLVMIEHSVFALPFAYIAALTAMYEADRNIHWGRLLLVTVCMVGLRTFAMAVNRIIDREIDARNPRTAHRELVTGAMSVRHAWTGALIALVVFLGAAALLNPLCLALAPVAVIPMVVYPYGKRFTNFPQAILGLAQAMGPVGGWLAISGEWSWTAVILGLAVGIWIGGFDLIYACQDVETDREIGVMSVPARFGIPAAIWGARACHTITTALFVWYALATGAGAFFWLGLLIVAAAFLYEHHIVRPHDLSRLNRAFFSVNGFIGIALFVCALLDLLVRGLTV
>NZ_LN997842.1|WP_059251849.1|5730983_5731646_+|UbiX-family-flavin-prenyltransferase
MPWIVGVSGASGTPYAAAVLRALLGAGEAVDLVVSRASRLTLLDETGISFRDAHWQDDLREWLARGADGKPGTFDVDVSGVRYWSAGDLAAGPSSGSYPAKGMLIVPASTACVAGVALGLSKDLLQRTASVTLKERRTLVVAVRETPLNGQTLRHLVALDDAGASVVPASPAFYAGATHIQDLVDFVAGRVLDAAGVAHGLYRRWRGELGGGSADDRQDK
>NZ_LN997842.1|WP_059251851.1|5731708_5732164_+|Lrp/AsnC-family-transcriptional-regulator
MDAVDRQLIQALRENGRASYAELGRLVGLSGPSVTDRINRLEAAGVITGYRATVNAASLGLGVTALIGISLSDAADHEDVAQRLRDLPEIEDCWFIAGDDSYMLKVRATDVDGLERIIRRLSGTKGVSRTRTTIVLSTKWENRVGELPEEV
>NZ_LN997842.1|WP_059251852.1|5732202_5733366_+|aminofutalosine-synthase-MqnE
MDVGLKRELEEKVRSGERLTREDGIALYESDDLAWLGGLAHEVRTRKNGDVVHFNVNRHLNMTNVCTASCAYCSFQRKPGEKDAYTMRIEEAVKLAKAMESENLTELHIVNGLHPNLPWRYYPRSLRELKKALPNVSLKAFTATEIHHFETISGLSASEILDELIDAGLESLTGGGAEIFDWEVRRHIVDHRTHWEDWSRIHRLAHEKGLKTPCTMLYGHIEEPRHRVDHVLRLRELQDETNGFQVFIPLRYQHDFVDMKDGKVRNTLQARTQMATGAEALKTFAVSRLLFDNVPHVKVFWVMHGVQTAQLALQHGADDMDGSVVEYKITHDADNFGTPNKLTREDLLELIRDAGFRPVERNTRYEIIREYEGPDPARRDAPQPMRV
>NZ_LN997842.1|WP_059251854.1|5733464_5734124_+|DNA-polymerase
MVSTRAPEDAYTAEPFVPEGADLAALRSAAAGCRGCPLHRAATRTVFGAGNADARVMLVGEQPGDQEDRQGRPFVGPAGKLLDRALAEAGVDPAEAYVTNAVKHFKFTQAEPRKRRIHKAPSLREMTACGPWLAAELALVEPELIVILGATAGKALLGSSFRVGEVRGTVLEREIHGRPERLVPTVHPSSVLRARDDEDRKAAYEGLVADLRVAARALG
>NZ_LN997842.1|WP_059251856.1|5734140_5734665_+|GNAT-family-N-acetyltransferase
MPLTFTLDPAITPALRDGILDLWTDVSNAGGAVGFVAPVTREEIRPELVRHFVQMAEGRTRLLVGRDEAGEIAAAAFLTRNTHRLMTHWVWLYTVMVHPRHQGQGYGRDLLAAAADAARQMAGVEAIRLTCRGGLGLERFYASCGYKEVGRIPDAIRVAPGDDRDDVIMLLPLA
>NZ_LN997842.1|WP_059251858.1|5734746_5735055_+|DUF4229-domain-containing-protein
MLRYTLMRLGIFAGCLVVVWGAVYSGIFPRGFGDSNGLWVLLLSLVLSAPISWVALRKERDRASVQIVTKVDRMKANLEANRSQEDVADDRSRARGGAAASN
>NZ_LN997842.1|WP_059251860.1|5735122_5735737_+|TetR/AcrR-family-transcriptional-regulator
MREQQMLDAAVRIFGQRGYMAASMDEIAELAGVSKPLVYLYLNSKEDLFTACIRREAAALTEAVRAGVRPGLPADRQLWDGLRAFFAHTAEHPDAWSVLHLQARTHGEPFAGEVAAMRAEIVAFVTRLVAVAAREAHRDPDLPEHEVAGLSEALVGAAESLAAWANTTPGATARQAATTLMNFAWSGLGNLMRGQVWTPPMDEA

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Crispr_ID: NZ_LN997842_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN997842_11

5862433-5862527

Orphan

Consensus_repeat	Method
CAAGAGCAGCTACAGCAGCAGCAACGAACCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN997842_11

>merge|NZ_LN997842|11|5862433-5862527|CRISPRCasFinder
CAAGAGCAGCTACAGCAGCAGCAACGAACCCGGCGACTGCCTCGAACTGGCTCTTGCCTGGTACAAGAGCAGCTACAGCAGCAGCAGCGAACCCG

>NZ_LN997842|11|11|5862433-5862527|CRISPRCasFinder
CAAGAGCAGCTACAGCAGCAGCAACGAACCCG	GCGACTGCCTCGAACTGGCTCTTGCCTGGTA
CAAGAGCAGCTACAGCAGCAGCAGCGAACCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN997842.1\|WP_107118017.1\|5860934_5861414_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|340413
NZ_LN997842.1\|WP_059252070.1\|5869914_5870196_+\|30S-ribosomal-protein-S19	unknown	unknown	gnl\|CDD\|178985
NZ_LN997842.1\|WP_059252064.1\|5865477_5866539_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_003948652.1\|5850929_5851301_+\|30S-ribosomal-protein-S12	unknown	unknown	gnl\|CDD\|235355
NZ_LN997842.1\|WP_014674371.1\|5868607_5869027_+\|50S-ribosomal-protein-L23	unknown	unknown	gnl\|CDD\|235586
NZ_LN997842.1\|WP_059252056.1\|5861564_5862410_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379262
NZ_LN997842.1\|WP_003948644.1\|5866979_5867288_+\|30S-ribosomal-protein-S10	unknown	unknown	gnl\|CDD\|179076
NZ_LN997842.1\|WP_030601203.1\|5869065_5869902_+\|50S-ribosomal-protein-L2	unknown	unknown	gnl\|CDD\|236488
NZ_LN997842.1\|WP_059252062.1\|5863205_5865440_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059252051.1\|5859883_5860735_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379352
NZ_LN997842.1\|WP_059252049.1\|5859240_5859831_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_LN997842.1\|WP_003998848.1\|5851303_5851774_+\|30S-ribosomal-protein-S7	unknown	unknown	gnl\|CDD\|235398
NZ_LN997842.1\|WP_059252047.1\|5855384_5856092_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_028420772.1\|5870239_5870587_+\|50S-ribosomal-protein-L22	unknown	unknown	gnl\|CDD\|234793
NZ_LN997842.1\|WP_059252068.1\|5867957_5868608_+\|50S-ribosomal-protein-L4	unknown	unknown	gnl\|CDD\|235404
NZ_LN997842.1\|WP_030778468.1\|5854095_5855289_+\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|234596
NZ_LN997842.1\|WP_059252066.1\|5867304_5867949_+\|50S-ribosomal-protein-L3	unknown	unknown	gnl\|CDD\|234564
NZ_LN997842.1\|WP_059252045.1\|5851813_5853940_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
NZ_LN997842.1\|WP_107118093.1\|5856316_5859250_+\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|379757
NZ_LN997842.1\|WP_059252060.1\|5862785_5863145_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LN997842.1\|WP_107118017.1\|5860934_5861414_-\|ATP-binding-protein	gnl\|CDD\|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	1.50374e-15
NZ_LN997842.1\|WP_003948652.1\|5850929_5851301_+\|30S-ribosomal-protein-S12	gnl\|CDD\|235355	PRK05163, rpsL, 30S ribosomal protein S12; Validated.	6.66377e-87
NZ_LN997842.1\|WP_014674371.1\|5868607_5869027_+\|50S-ribosomal-protein-L23	gnl\|CDD\|235586	PRK05738, rplW, 50S ribosomal protein L23; Reviewed.	2.2065e-44
NZ_LN997842.1\|WP_059252056.1\|5861564_5862410_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|379262	pfam13560, HTH_31, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	9.13637e-07
NZ_LN997842.1\|WP_003948644.1\|5866979_5867288_+\|30S-ribosomal-protein-S10	gnl\|CDD\|179076	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed.	1.10432e-69
NZ_LN997842.1\|WP_030601203.1\|5869065_5869902_+\|50S-ribosomal-protein-L2	gnl\|CDD\|236488	PRK09374, rplB, 50S ribosomal protein L2; Validated.	0
NZ_LN997842.1\|WP_059252051.1\|5859883_5860735_-\|hypothetical-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	0.00120725
NZ_LN997842.1\|WP_059252049.1\|5859240_5859831_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.1829e-11
NZ_LN997842.1\|WP_003998848.1\|5851303_5851774_+\|30S-ribosomal-protein-S7	gnl\|CDD\|235398	PRK05302, PRK05302, 30S ribosomal protein S7; Validated.	7.35584e-104
NZ_LN997842.1\|WP_059252070.1\|5869914_5870196_+\|30S-ribosomal-protein-S19	gnl\|CDD\|178985	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed.	5.61688e-62
NZ_LN997842.1\|WP_028420772.1\|5870239_5870587_+\|50S-ribosomal-protein-L22	gnl\|CDD\|234793	PRK00565, rplV, 50S ribosomal protein L22; Reviewed.	9.98179e-65
NZ_LN997842.1\|WP_059252068.1\|5867957_5868608_+\|50S-ribosomal-protein-L4	gnl\|CDD\|235404	PRK05319, rplD, 50S ribosomal protein L4; Provisional.	1.41152e-107
NZ_LN997842.1\|WP_059252066.1\|5867304_5867949_+\|50S-ribosomal-protein-L3	gnl\|CDD\|234564	PRK00001, rplC, 50S ribosomal protein L3; Validated.	1.9372e-128
NZ_LN997842.1\|WP_059252045.1\|5851813_5853940_+\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
NZ_LN997842.1\|WP_107118093.1\|5856316_5859250_+\|glycosyl-hydrolase	gnl\|CDD\|379757	pfam15979, Glyco_hydro_115, Glycosyl hydrolase family 115. Glyco_hydro_115 is a family of glycoside hydrolases likely to have the activity of xylan a-1,2-glucuronidase, EC:3.2.1.131, or a-(4-O-methyl)-glucuronidase EC:3.2.1.-.	0
NZ_LN997842.1\|WP_030778468.1\|5854095_5855289_+\|elongation-factor-Tu	gnl\|CDD\|234596	PRK00049, PRK00049, elongation factor Tu; Reviewed.	0

>NZ_LN997842.1|WP_059252056.1|5861564_5862410_+|XRE-family-transcriptional-regulator
MSEGVDEAGWDVEPGDEMEPVVQAVGRLLKVCREAAGVSVPEFGEAMGYGEDMIRKIERGARIPRPEFLDRADTFLKAQGHLRAFMEDMRKARYPKKVRELAEMEGRAVEMLAYGNHNIHGLLQTPEYARAMYAMRQPALTEDVVERETAARMARKAVFEREPAPTLSFVQEQVTLERPYGGKMVLRRQLEHLLEVSQLRNVTLQVMPTDREEHAGAAGLIEMLKFADGTAIGRSDGAFNGRPVSNPKDLRILDLRYGMIRAQALTPRESQTFIEQALERL
>NZ_LN997842.1|WP_107118017.1|5860934_5861414_-|ATP-binding-protein
MAAPENQLGSPISNFSVRLSPTPRGARLARLLTEQQLRTWGLPWEKATQIVAELAANAATHGRVPGRDFQLLLYVVGETLRIEVTDTRGDRLPRLTCAAEDGESGRGLVLVAALADRWGVAEGRHPRKTVWAEVTVPAPEPGGPCSGATGGLSQGRKQG
>NZ_LN997842.1|WP_059252051.1|5859883_5860735_-|hypothetical-protein
MDTQNPSVPSHARSRIGGNNYPNRGRHTGGLVHDHTRHTARFTVIGNHLTQHADLSLLAIGLACHIQSLPPGARVDIKTLAARFPEGATRIAAALRELETHGYLRRERARVPGGRIVTRTISCNQPGRRREASGPTPAPRRKQTRRTALPAVPKPVYPSPALLQTATEVLAGLRRRDPRLLLSATDTEHLAPGVAAWLERDLPPTAVREALTTGLPREPLARPAALLAHRLTTGLPPLPPYRAPEPPPAARHPLQTCDGCDRAFRAPHPGHCRDCRTDLQEAA
>NZ_LN997842.1|WP_059252049.1|5859240_5859831_-|Uma2-family-endonuclease
MTIAADNSRQGASHLYRTMRDVVQSMGDAVPGKFEITKEGIVHDMMSPGGPHEVTAAHLSRRLEKVMPDELLAHTGTPDVEDEPENILRHPDVIVIAWADLGVEGSADPRTVFAAIEIVSRSNPENDWVGKVRDYPLMGIPVYAVFDPRTGTGAVFTDIHPTPDGPRYATRKDFVYGEDVTIADWTISTEGLPLYG
>NZ_LN997842.1|WP_107118093.1|5856316_5859250_+|glycosyl-hydrolase
MTEPGGYISFSGGAFSLVGAPVVVSPEDHPGVVRVAGDLRDDLARVTGVRPGGTIARFPVLLGTIGRSPLIDGLIRSGKLDVSGVRGRWETSLQTVVDHPMPGVERAFVVAGSDPRGTIFGAYDVSYGIGVSPWYWWDDVPPARRDQVWVKRGRFTQGTPVVKYRGVFINDENPALGTWAPAYFGPGKAPGHPGGFTADFYARVFEVLLRLKGNYLWPAVWGRAFAEDDPENHRRAAEYGIVMGTSHEAPMMRGIEEWNRHAGSGTDPYGGTGVWSYRRNADAIRAYWRAGIQRMVDQGFEGVVTLGMRGNGDTSLPDGDGIELMQQIIADQRRIIEEVTGKPAAETPQVWTLYKEVQRYWDRGLRAPDDVTVVLTDDNWGNIRKHPDGPRSGGYGLYYHFDYVGAGRNYKWVDTANLSNVWEQLHQAHAYGNHGLWVANVGDLKGNEVPTEFFLNYAWNPDALPLERLGAWEERYARQNFGEAQAKEIASLLATYGRLQARRKPELLNRRITLAGDRVVYDDRQTPYYFAHRELERVTEEWRALGRRAERVERRLPAELRDAWFELAGYQMTATANLYALREAEFTNLLYAAQGRAATNDRAARAEAGLDRDLALADRFNSRVANGKWRGFQTQPHIDYGDVERYGPDAGWQQPEKDNVALPDVLFPAVRRIEVPQAAELGVSVDGAEDAGEWWPGGASGEAVLPPFSPYQTRPRQYVEIFNRGRTPFPYEVSVSAPWLRVDRPRGRVEQQVRLEVEVDWSRLRADRAEATLTVRGAGASVVVRCVAERPSGVKARGFVEAGGYVAIDAGHYDRAVGQWRRIDGIGRTGAGMTPWPVTSPSRTPGGSSPRLEYEVTLLSAPGEVTVWAYLSPRNPALPGVSGLRYGISLDDGPIQTVDITAGADDGALNTVWARNTSDNVNRTATRHTVTSPGVHRLRFWMVDPTVVVQRLLIDTGGLPELYLGPEESRRAGDGHP
>NZ_LN997842.1|WP_059252047.1|5855384_5856092_+|hypothetical-protein
MSIREGRLRAAVPWLAAAAVVLYGGWSMLPRGGPEETGPARAVGLPGGGLSAGDHCGEKGYHHFPLPAAATSPAPRPADPRAPGPRLALGSYGYEKLSARTPGRFTVSLLFAPGPKGAPKPSRTLGGEGVAVEIEGPHGLVAGAHGLPVTWASPARPDDADQTPLDPGGGAAAEVSVPLAALCPGHDPETVMERLLAPIDSSNTITGQPAYTLTVSLRGPDGDLLSAGNLVPLDP
>NZ_LN997842.1|WP_030778468.1|5854095_5855289_+|elongation-factor-Tu
MAKAKFERTKPHVNIGTIGHIDHGKTTLTAAITKVLHDAYPDLNEATPFDNIDKAPEERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTKEHVLLARQVGVPYIVVALNKADMVDDEEILELVELEVRELLSEYEFPGDDVPVVKVSALKALEGEQEWVDSVLNLMKAVDESIPQPERDVDKPFLMPIEDVFTITGRGTVVTGRIERGVLKVNENVDIIGIKPEKTSTTVTGIEMFRKLLDEGQAGENVGLLLRGIKREDVERGQVIIKPGSVTPHTEFEAQAYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEMVMPGDNTEMKVELIQPVAMEEGLKFAIREGGRTVGAGQVTKIVK
>NZ_LN997842.1|WP_059252045.1|5851813_5853940_+|elongation-factor-G
MATTSLDLAKVRNIGIMAHIDAGKTTTTERILFYTGVSYKIGEVHDGAATMDWMEQEQERGITITSAATTCHWPLENVDHTINIIDTPGHVDFTVEVERSLRVLDGAVTVFDGVAGVEPQSETVWRQADRYGVPRICFVNKLDRTGAEFHRCVDMISDRLGAQPIVMQLPIGAEADFKGVVDLVRMKALVWSAEATKGEMYDIVDIPDTHTEAAEEWRGKLLEAVAENDEEIMELYLEGEEPSEEQLYAAIRRITIASGKGTGTTVTPVFCGTAFKNKGVQPLLDAVVRYLPSPVDIEAIEGHAVNDPEEVVRRKPSDEEPLSALAFKIMSDPHLGKLTFVRVYSGRLESGTQVLNSVKGKKERIGKIYRMHANKREEIESVGAGDIVAVMGLKQTTTGETLSDDKNPVILESMDFPAPVIQVAIEPKSKGDQEKLGVAIQRLAEEDPSFQVHSDEETGQTIIGGMGELHLEVLVDRMRREFKVEANVGKPQVAYRETIRKAVERVDYTHKKQTGGTGQFAKVQIGIEPLEGGDTSYEFVNKVTGGRIPKEYIPSVDAGAQEAMQFGILAGYEMTGVRVILHDGAYHEVDSSELAFKIAGSQAFKEAARKASPVLLEPMMAVEVTTPEDYMGEVIGDINSRRGQIQAMEERAGARVVKGLVPLSEMFGYVGDLRSKTSGRASYSMQFDSYAEVPRNVAEEIIAKAKGE
>NZ_LN997842.1|WP_003998848.1|5851303_5851774_+|30S-ribosomal-protein-S7
MPRKGPAPKRPVIIDPVYGSPLVTSLINKVLLNGKRSTAERIVYGAMEGLREKTGNDPVITLKRALENIKPTLEVKSRRVGGATYQVPVEVKPGRANTLALRWLVGYSRARREKTMTERLLNELLDASNGLGAAVKKREDTHKMAESNKAFAHYRW
>NZ_LN997842.1|WP_003948652.1|5850929_5851301_+|30S-ribosomal-protein-S12
MPTIQQLVRKGRQDKVEKNKTPALEGSPQRRGVCTRVFTTTPKKPNSALRKVARVRLTSGIEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIIRGSLDTQGVKNRKQARSRYGAKKEK
>NZ_LN997842.1|WP_059252060.1|5862785_5863145_+|hypothetical-protein
MVAGSAPGEQTGLASSPAEKRAAANAIHDHIAPDTTKAGQAADEQTNAVVKAFDAKDGHGWLTSAAVSKAHETWGEQVQGLHRRLMREMSALRGTNTVLTGTDVGVASGVRASSPLDAL
>NZ_LN997842.1|WP_059252062.1|5863205_5865440_+|hypothetical-protein
MPTYHEILTTDLSTLTAAAEHWDDVAEDLHKQETAYRRDVHGISMGPSWQGLYTTVADEHFAVTLKEFQKAQTEAKAIAALFRDAHTQFVDLRKKLESARQDAVAAKMKVSDQGVVSYDTGKLTDGDRQALAHDPDYQESVRKAVASWQARIDQCVKDVEDADKGVEIAFQAVVTDSDIGDGTIGGFNGRAQGDIEKYEAHEAEDIAERVSAGEASQHDYRELQRLLHGNSGDKAFSQTLLDGLGARGTLQLSNSLDSLAHYDDKQHGSRYLDIQKGLATTLATATKDPHSDFYQGFRADLRKAGTEQFKVDGLSSVPDEKVRGYQSLVTLMQHGHGYDGQFLKDTADDIRHAEESYTPRGGNPTESLWGLRDRFSGEDRGWFANDPLDGVLGIMSHDPEVSTEYLDPARNDNLRYLLHGRNWDTVVDHYATPPGGTTVGIPVLAEDGDVRKGFGAALEAATTGEAPGGYHAAGPHTEPQARILQHTINTLYTDKHAQELPKGLVTPMAHILTSYTPDTHETYAESSSKYDIDWDSEGSVWSDKDGAHLAVGHQRLAAVMRGVANDPEAFGHLYGAEQQYTHHVLETIPADAGDKTIRDRIVESSRAMGAYDGIRSDIIYDERFEKTQWAADFNHGIGTALGTALLFNPVKDLSPVGDLTNKAIDVWAYESNKEHTAEANLAATEQNAKTYDAGQHDVEKLVRAWADSRGHGIDSDWTKYYVHAGQNDYEHGRDRTLSTLRADR
>NZ_LN997842.1|WP_059252064.1|5865477_5866539_+|hypothetical-protein
MQKKSGLRGVHAGWYAGVAVLVVGLVAAVLYGSGAYDSWRDGRSLDEACDGTLAQGGLASALGSSDLRAEQGDGGALAECTVKTSPGTGRAVQITLRWSTTAAPAGTLARYDSGYDGVRAQAAPLGNGWPGVVRHDGTWQIMVALDCLNQKDKALVAYGDLYGAADGTALTGLGRVTTETARAAAGKYGCRARAGKPLTQVSTARLGTPGTAKPAGRAQGSCVALRDTSVARSGTPEIMEYPADPDAPQTTCYLVTGAKKPGYGLYAYYGAAAKDFESTGYGGPDHDSVLATAPCPRSTHEAVFALYRLHDRDTDSYPVPHYSASFARLALKAFAEHEAEQRGCGAVRIMSRP
>NZ_LN997842.1|WP_003948644.1|5866979_5867288_+|30S-ribosomal-protein-S10
MAGQKIRIRLKAYDHEVIDSSAKKIVETVTRTGASVAGPVPLPTEKNVYCVIKSPHKYKDSREHFEMRTHKRLIDILDPTPKTVDSLMRLDLPAGVDIEIKL
>NZ_LN997842.1|WP_059252066.1|5867304_5867949_+|50S-ribosomal-protein-L3
MAKQIKGILGEKLGMTQVWDENNRVVPVTVVKAGPNVVTQVRTNDVDGYESVQIAFGEIDPRKVNKPLKGHFAKADVTPRRHLVEIRTADASEYTLGQEITAAVFEAGVKVDVTGKSKGKGFAGVMKRHNFRGLGAGHGTQRKHRSPGSIGGCATPGRVFKGLRMAGRMGNERVTTQNLTVHAVDAEKGLLLIKGAVPGPNGGLVLVRTAAKGA
>NZ_LN997842.1|WP_059252068.1|5867957_5868608_+|50S-ribosomal-protein-L4
MSTVDILSPAGEKAGSVELPAEIFDAKVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGGGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALTDRARHNRIHVVSGVVEGAISTKAAKSLFGKISERKNLLLVAERSDEAAWLSARNLPQVHILEPGQLNTYDVLVSDDVVFTQAAFESFVSGPKAADTEGSEA
>NZ_LN997842.1|WP_014674371.1|5868607_5869027_+|50S-ribosomal-protein-L23
MAIRHPAIASKAAKAAKAARVAKARRHAAEGKNTVETPLSKSYTDPRDVLLKPVVSEKSYALLDENKYTFVVDPRANKTQIKEAVQAVFDVKVTGVNTINRQGKRKRTRTGFGQRAATKRAIVTLAEGDRIDIFGGPTA
>NZ_LN997842.1|WP_030601203.1|5869065_5869902_+|50S-ribosomal-protein-L2
MGIRKYKPTTPGRRGASVADFVEVTRSTPEKSLVRPLHSKGGRNNAGRVTVRHQGGGHKRAYRVIDFRRHDKDGVPAKVAHIEYDPNRTARIALLHYADGEKRYILAPRNLQQGDTVENGPGADIKPGNNLALRNIPVGTTIHAIELRPGGGAKFARSAGASVQLLAKEGAYAHLRMPSGEIRLVDVRCRATVGEVGNAEQSNINWGKAGRKRWLGVRPTVRGVVMNPVDHPHGGGEGRTSGGRHPVSPWGKKEGRTRSPKKASNKYIVRRRKTNKKR
>NZ_LN997842.1|WP_059252070.1|5869914_5870196_+|30S-ribosomal-protein-S19
MPRSLKKGPFVDDHLMKKVDAQNDAGTKNVIKTWSRRSMIVPAMLGHTIAVHNGKTHIPVFVTESMVGHKLGEFSPTRTFRGHVKEDRKSKRR
>NZ_LN997842.1|WP_028420772.1|5870239_5870587_+|50S-ribosomal-protein-L22
MEARAQARYIRVTPMKARRVVDLIRGMDATEAQAVLRFAPQAASVPVGKVLDSAIANAAHNYDHTDVDSLYISEAYVDEGPTLKRFRPRAQGRAYRIRKRTSHITVVVSSKEGTR

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Crispr_ID: NZ_LN997842_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN997842_12

5888027-5888165

Orphan

Consensus_repeat	Method
ACGCGGCGGAGCCGCATGTCGGTACGGCCCCGCGCCCCTAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN997842_12

>merge|NZ_LN997842|12|5888027-5888165|CRISPRCasFinder
ACGCGGCGGAGCCGCATGTCGGTACGGCCCCGCGCCCCTAGGTCGGCTGGGGGATTGGGCGTTGTGGGCCGCGGGTCCGTCGTGGCGTGTCGCGCGGACGCGGCGGAGCCGCATGTCGGTACGGCCCCGTGCCCCTAGG

>NZ_LN997842|12|12|5888027-5888165|CRISPRCasFinder
ACGCGGCGGAGCCGCATGTCGGTACGGCCCCGCGCCCCTAGG	TCGGCTGGGGGATTGGGCGTTGTGGGCCGCGGGTCCGTCGTGGCGTGTCGCGCGG
ACGCGGCGGAGCCGCATGTCGGTACGGCCCCGTGCCCCTAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN997842.1\|WP_086697143.1\|5889122_5890112_-\|type-I-pantothenate-kinase	unknown	unknown	gnl\|CDD\|235466
NZ_LN997842.1\|WP_059252097.1\|5896140_5897304_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
NZ_LN997842.1\|WP_059252081.1\|5883464_5884319_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_LN997842.1\|WP_003998809.1\|5880316_5880430_+\|50S-ribosomal-protein-L36	unknown	unknown	gnl\|CDD\|179039
NZ_LN997842.1\|WP_059252095.1\|5893321_5894077_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059255183.1\|5894087_5894459_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234610
NZ_LN997842.1\|WP_059252091.1\|5892187_5892385_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_003998795.1\|5885950_5886463_+\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_LN997842.1\|WP_059252098.1\|5897474_5898734_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_LN997842.1\|WP_059252089.1\|5890274_5892122_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_LN997842.1\|WP_003966937.1\|5881622_5882645_+\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359
NZ_LN997842.1\|WP_003998796.1\|5885464_5885908_+\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_LN997842.1\|WP_059252079.1\|5882825_5883326_+\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
NZ_LN997842.1\|WP_059252093.1\|5892489_5893272_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_LN997842.1\|WP_059252083.1\|5884320_5885196_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059252100.1\|5898699_5899212_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|376771
NZ_LN997842.1\|WP_030641206.1\|5880622_5881003_+\|30S-ribosomal-protein-S13	unknown	unknown	gnl\|CDD\|235358
NZ_LN997842.1\|WP_059252085.1\|5886606_5887965_+\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237672
NZ_LN997842.1\|WP_003956432.1\|5881068_5881473_+\|30S-ribosomal-protein-S11	unknown	unknown	gnl\|CDD\|180007
NZ_LN997842.1\|WP_107118018.1\|5894510_5895944_+\|NAD(P)H-hydrate-dehydratase	unknown	unknown	gnl\|CDD\|238576

Protein	Function_ID	Function_description	E-value
NZ_LN997842.1\|WP_086697143.1\|5889122_5890112_-\|type-I-pantothenate-kinase	gnl\|CDD\|235466	PRK05439, PRK05439, pantothenate kinase; Provisional.	0
NZ_LN997842.1\|WP_059252097.1\|5896140_5897304_+\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	2.20148e-157
NZ_LN997842.1\|WP_059252081.1\|5883464_5884319_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	1.27398e-108
NZ_LN997842.1\|WP_003998809.1\|5880316_5880430_+\|50S-ribosomal-protein-L36	gnl\|CDD\|179039	PRK00465, rpmJ, 50S ribosomal protein L36; Reviewed.	9.12326e-13
NZ_LN997842.1\|WP_059252100.1\|5898699_5899212_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|376771	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE. This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).	4.02682e-47
NZ_LN997842.1\|WP_059255183.1\|5894087_5894459_+\|holo-ACP-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	1.27467e-46
NZ_LN997842.1\|WP_003998795.1\|5885950_5886463_+\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	6.97848e-73
NZ_LN997842.1\|WP_059252098.1\|5897474_5898734_+\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.63223e-29
NZ_LN997842.1\|WP_059252089.1\|5890274_5892122_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_LN997842.1\|WP_003966937.1\|5881622_5882645_+\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	0
NZ_LN997842.1\|WP_003998796.1\|5885464_5885908_+\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	1.16505e-100
NZ_LN997842.1\|WP_059252079.1\|5882825_5883326_+\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	3.29599e-65
NZ_LN997842.1\|WP_059252093.1\|5892489_5893272_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	8.9128e-75
NZ_LN997842.1\|WP_030641206.1\|5880622_5881003_+\|30S-ribosomal-protein-S13	gnl\|CDD\|235358	PRK05179, rpsM, 30S ribosomal protein S13; Validated.	1.29623e-75
NZ_LN997842.1\|WP_059252085.1\|5886606_5887965_+\|phosphoglucosamine-mutase	gnl\|CDD\|237672	PRK14318, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_LN997842.1\|WP_003956432.1\|5881068_5881473_+\|30S-ribosomal-protein-S11	gnl\|CDD\|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	6.79398e-88
NZ_LN997842.1\|WP_107118018.1\|5894510_5895944_+\|NAD(P)H-hydrate-dehydratase	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	1.08011e-61

>NZ_LN997842.1|WP_059252085.1|5886606_5887965_+|phosphoglucosamine-mutase
MGRLFGTDGVRGVANADLTAEMALGLSVAAAHVLAEAGTFEGHKPKAVVGRDPRASGEFLEAAVVAGLASAGVDVLRVGVLPTPAVAHLTGALGADLGVMLSASHNAMPDNGIKFFARGGHKLADELEDKIEAVYESHRHGEPWERPTGAGVGRVRSYDEGFEQYVAHLLSVLPNRLDGLKIVLDEAHGAASGVSPEAFARAGAKIVTIGAEPDGLNINDGCGSTHLDKLKAAVVEHGADLGIAHDGDADRCLAVDHTGEEVDGDQILSVLALAMRERSALRADTVVATVMSNLGFKLAMERAGIRLVQTAVGDRYVLEEMKEHGYALGGEQSGHVIILDHATTGDGTLTGLLLAARVAETGRTLRELASVMERLPQVLINVPDVDKSRVKTSADVAAAVAEAERELGSTGRVLLRPSGTEPLVRVMVEAADIEQARAVAGRLADAVKSALG
>NZ_LN997842.1|WP_003998795.1|5885950_5886463_+|30S-ribosomal-protein-S9
MAETTAEQPLEELDIDSYTTESEVPVEGEYTSESLASRFGEPQPAAGLGRRKNAIARVRIVPGTGKWKINGRTLEDYFPNKVHQQEVNEPFKVLELEGRYDVIARIAGGGVSGQAGALRLGVARALNEADVDNNRGPLKKAGFLRRDDRAVERKKAGLKKARKAPQYSKR
>NZ_LN997842.1|WP_003998796.1|5885464_5885908_+|50S-ribosomal-protein-L13
MRTYSPKPGDVTRQWHVIDAQDVVLGRLATTAATLLRGKHKPIYAPHVDAGDFVIIINADKVHLSGNKRTQKMAYRHSGYPGGLRSVRYDELLDKNPEKAIEKAVKGMLPKNSLGRQMLSKLKVYKGDQHPHGAQQPQPYEITQVAQ
>NZ_LN997842.1|WP_059252083.1|5884320_5885196_-|hypothetical-protein
MSYGQGGPQSQWDPWKPQSQQPWNSGSDDGTPDWAALAEASESRNKRRKLLFIAGGALATIAIGTAVAMAVVSANGGDPEAGPSNLPASASLPGSATATPSFAPTSAPPPLDPKDFISSAKKDTAPLSPDTLFPDKQLPVDGTVYKKGPTADTTSCATAAGGTLPKILTANGCTRLMRTTYTDGGIAVTVGVAVFDTAAQATKAKAQTDDRSIVRSLFGKGVKPFCDGAFCRSTRNAYGRYAYFTISGFTSGKDVTTKDTKVFRAGNDLAQFAANQIHRRGQTQASAAANQ
>NZ_LN997842.1|WP_059252081.1|5883464_5884319_+|tRNA-pseudouridine(38-40)-synthase-TruA
MSDEVAPGHVRLRLDLSYDGTGFHGWAKQAGGRRTVQGEIEDALRTVTRSRETYELTVAGRTDAGVHARGQVAHVDLPEGVWREHHEKLLKRLAGRLPKDVRVWALREAPSGFNARFSAVWRRYAYRVTDNPGGVDPLLRGHVLWHDWPLDVDAMNEAARALLGEHDFAAYCKKREGATTIRTLQELSLVRGDDGIITATVRADAFCHNMVRSLIGALLFVGDGHRGPEWPGKVLAAGVRDSAVHVVRPHGLTLEEVGYPADELLAARNKEARNKRSLPSAGCC
>NZ_LN997842.1|WP_059252079.1|5882825_5883326_+|50S-ribosomal-protein-L17
MPKPTKGARLGGSAAHEKLLLANLAKSLFEHGRITTTEAKARRLRPYAERLITKAKKGDLHNRRQVLQVITDKSIVHTLFTEIGPRYENRPGGYTRITKIGNRRGDNAPMAVIELVEALTVQQKAVGEAEAATKRAVKEADEAKVEETKVEETEAAEAPAEESKDA
>NZ_LN997842.1|WP_003966937.1|5881622_5882645_+|DNA-directed-RNA-polymerase-subunit-alpha
MLIAQRPSLTEEVVDEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTDLILNIKQLVVSSEHDEPVVMYLRKQGPGLVTAADIAPPAGVEVHNPDLVLATLNGKGKLEMELTVERGRGYVSAVQNKQVGQEIGRIPVDSIYSPVLKVTYKVEATRVEQRTDFDKLIVDVETKQAMRPRDAMASAGKTLVELFGLARELNIDAEGIDMGPSPTDAALAADLALPIEELELTVRSYNCLKREGIHSVGELVARSEADLLDIRNFGAKSIDEVKAKLAGMGLALKDSPPGFDPTAAADAFGADDDADAGFVETEQY
>NZ_LN997842.1|WP_003956432.1|5881068_5881473_+|30S-ribosomal-protein-S11
MPPKGRQGAAKKVRRKEKKNVAHGHAHIKSTFNNTIVSITDPSGNVISWASAGHVGFKGSRKSTPFAAQMAAESAARRAQEHGMRKVDVFVKGPGSGRETAIRSLQATGLEVGSIQDVTPTPHNGCRPPKRRRV
>NZ_LN997842.1|WP_030641206.1|5880622_5881003_+|30S-ribosomal-protein-S13
MARVSGVDIPRDKRVEIALTYVFGIGRTLSKETLAATGVDPNTRVRDLTEEQLVAIREYVDNNIKTEGDLRREIQADIRRKVEIGTYQGLRHRRGLPVRGQRTSTNARTRKGPRRAIAGKKKPGKK
>NZ_LN997842.1|WP_003998809.1|5880316_5880430_+|50S-ribosomal-protein-L36
MKVKPSVKKICDKCRVIRRHGRVMVICENPRHKQRQG
>NZ_LN997842.1|WP_086697143.1|5889122_5890112_-|type-I-pantothenate-kinase
MISPVSSMPRSAHRHRPEATPYVDLTRAEWSALRDKTPLPLTAEEVEKLRGLGDVIDLDEVRDIYLPLSRLLNLYVGATDGLRGALNTFLGEQGSQSGTPFVIGVAGSVAVGKSTVARLLQALLSRWPEHPRVELVTTDGFLLPTRELEARGLMSRKGFPESYDRRALTRFVADIKAGKGEVTAPVYSHLIYDIVPGEKLTVRRPDILIVEGLNVLQPALPGKDGRTRVGLADYFDFSVYVDASAEDIERWYLNRFKKLRQTAFQNPSSYFRKYTQVSEEEALDYARTLWRTINKPNLVENIAPTRGRATLILRKGPDHKVQRLRLRKL
>NZ_LN997842.1|WP_059252089.1|5890274_5892122_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYVGSQSALDVVMAGLKRLEYRGYDSAGVAVLADGGLAAAKKAGKLVNLEKELVDRPLPTGSTGIGHTRWATHGGPTDANAHPHLDNAGRVAVVHNGIIENFAVLRAELAERGHELNSETDTEVVAHLLAEEFSSCADLAEAMRLVCRRLEGAFTLVAVHADEPDVVVGARRNSPLVVGVGEGEAFLASDVAAFIAHTRSAIELGQDQVVELRRDGVTVTGFDGRPAEVRSYHVDWDASAAEKGGYDYFMLKEIAEQPKAVADTLLGRIDPSGSLTLDEVRISPSELREIDKVVIVACGTAFHAGLIAKYAIEHWTRIPCEVELASEFRYRDPILDGRSLVIAISQSGETMDTLMALRHAREQGSKVLAICNTNGSTIPRESDAVLYTHAGPEVAVASTKAFLTQLVACYLVALYLGQVRGTKWGDEIQAVIKDLSRISEEVERVLETMEPVRALARTLAAKNTVLFLGRHVGYPVALEGALKLKELAYMHAEGFAAGELKHGPIALIEEDVPVVVVVPSPRGRSVLHDKIVSNIQEIRARGARTIVIAEEGDEAVVPYADHLIRIPATPTLLQPLVATVPLQVFACELATARGNEVDQPRNLAKSVTVE
>NZ_LN997842.1|WP_059252091.1|5892187_5892385_-|hypothetical-protein
MTSKSLGIALTTAVGIWGKGRKGTICNDGKAYKGGSYKVCGKKSDLWYYGGEKKTGWVPKTCVNW
>NZ_LN997842.1|WP_059252093.1|5892489_5893272_-|SDR-family-oxidoreductase
MTSSSAYLSDLFSLDGRTALVTGGSSGIGRAIAGALARAGARVVVVARRPEELAATAAELTDDGCRAAWVSGDLASRDGVRAAAEEAAAVFGEPDILVNSAGINLRPPLGELGEDVWDTTMAVNLEAPFLLGQRFGPGMAERGFGRIIHITSQQAHRAFVQSGAYGVSKGALESLARSQAEAWSPYGVTCNTLVPGFVMTPLNTRLSADPERVAALAARTMIGRNGLAEDFAGAAVFLASRASAYITGQSIPVDGGFSVH
>NZ_LN997842.1|WP_059252095.1|5893321_5894077_+|hypothetical-protein
MTDSPAPEAPYGSAADVPALLDRFAADPPGVWAELMDRLCPMLDTAFPESFAALPRLARIAAARPPAERRWVLAAAGPIVRCARWSAAGAAVRETHAAAIAELARLTDECLRSPLGMAEYAGLLQDALAFEGVAVWDECLERLAEGEYEVACPYCGVNLFLVIGDDGFFSCADDYALGEAERTPLRPADAALPAGPGARLHARALADGQPAFAERLLYLFGQGACTHCGTEFAVADRVADVVSPDPGTPGS
>NZ_LN997842.1|WP_059255183.1|5894087_5894459_+|holo-ACP-synthase
MSIIGVGIDVAEIDRFRASLERTPGLADRLFVTRELLLPSGERRGIASLAARFAAKEALAKALGAPPGLHWTDAEVYVEDTGQPRLRVKGTVAARAAELGVRAWHVSLSHDAGVASAVVVAEG
>NZ_LN997842.1|WP_107118018.1|5894510_5895944_+|NAD(P)H-hydrate-dehydratase
MRTAYSVETVRAAERVLMARLPEGALMQRAAAGLAAACAELLGRVYGSRVVLLVGSGDNGGDALYAGARLARRGAGVTAVLLSPERAHGAGLAALRRAGGTVTAPDGAEEPILRADLVVDGIVGIGGKGGLRPDAERLAGVVARSRAAVVAVDLPSGVDADTGEVRAPALRADLTVTFGAYKPGLLIDPAREYAGVVRLVDIGLAPPPADAELEALQHADVARLLPLPSAESDKYRRGVVGIAAGSARYPGAAVLAVSGALRGGAGAVRYVGPAGEAVLARFPETLVSDAGPAKAGRVQAWVVGPGAGDDAATVAEVLAADVPVLLDADGLRLAERDAVRRRTAPTLMTPHAGEAAALLGVRREEVEEARLAAVRELAAVYRATVLLKGSTTLVAGTGGGPVRVNATGTPWLATAGSGDVLSGLAGSLLAAGLGAVDAGSVAAYLHGLAGRFAADGAPMGAHDVASRIPEAWRDVMG
>NZ_LN997842.1|WP_059252097.1|5896140_5897304_+|alanine-racemase
MSETAAVPTAALRARAEIDLGALRANVRALRARAQGAAVMAVVKSDAYGHGAVPCAREALAAGASWLGTATAEEALALRAAGLPGRILCWLWVPGGPWRQAIEADIDVSLSGMWALREVARAARAAGRPARVQLKADTGLGRNGCQPGADWAELVAAALRAEAEGLVRVTGLWSHFACADEPGHPSIAAQLATFREMTAYAEEQGVRPEVRHIANSPATLTLPETHFDLVRTGIAMYGVSPSPELGTPAGFGLRPVMTLRAALALVKRAPGGHGVSYGHHYVTPGETTLGLVPVGYADGIPRHASGTGPVLVDGKWRTVAGRVAMDQFVVDLGGDEPPVGSEAVLFGPGDRGEPTAEDWAQACGTIAYEIVTRIGTRVPRVYVNGSA
>NZ_LN997842.1|WP_059252098.1|5897474_5898734_+|alpha/beta-hydrolase
MSESSAEAVADIVASAAAASAAGAAGSWRRATGIAGAAIGVLAAGAAAGVAIERMTVGRAVRRKARLALDAAGPYGTLRGTPGKAYADDGTELYYEVDEAEPDHGPDVSPRRRRLFGRKAPAPVTVVFCHGYCLSQDSWHFQRAALRGVVRTVHWDQRSHGRSGRGAAQVRDREPVTIDQLGRDLKAVLDAAVPDGPVVLVGHSMGGMTVMALAAQYPELIRDRVVATALVGTSSGRLGEVNFGLPVAGVNVVRRILPGVLKALGQQAELVEKGRRATAELFAGIIKRYSFAGRDVDPAVERFAERMIESTPIDVVAEFYPAFTDHDKTDALACFRDMPVLVLAGVQDLVTPSEHSEAIADLLPDAELVLVPDAGHLVMLEHPEVVTDRLADLLTRAGAVPAGATVSGYGSTSSTAQPR
>NZ_LN997842.1|WP_059252100.1|5898699_5899212_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MEAPAAPHNPAETQLTVTSPEQMRELGRRLAKLLRAGDLVMLTGELGAGKTTLTRGLGEGLGVRGAVTSPTFVIARVHPSLGDGPPLVHVDAYRLSGGLDEMEDLDLDVSLPDSVIVVEWGEGKVEELTEDRLQVVIHRAVGDTTDEVRHVTVTGLGERWAEAGLETLAG

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Crispr_ID: NZ_LN997842_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN997842_13

6344920-6345803

Orphan

Consensus_repeat	Method
GCGGCNGCNGCGGTCTTNCGGGTNCGGCG	CRT

12 spacers

The CRISPR arrays of NZ_LN997842_13

>merge|NZ_LN997842|13|6344920-6345803|CRT
ACGGCGGCCGTGGCCTTACGGGCCCGGCGCGGCTTGGGCGTCACCTCGGCGCTGTCACCGGCCGCCTCGGCGGCGGACGCCGCGGTCTTGCGGGTCCGGCGCCGCGGCTTGACCTCCGGCTCCTCGGTGGCCTGCGCCGGAATCTCCGGAGCAGCCGCCTCGGCGACGGCCTTACGGGTCCGCCGTGCCTTCGGAGCGGCGACGGCTTCCCCGTCGACGGCGTCCACGGCGGCGGTCGCGGCCTTCCGGGTGCGGCGCGGCTTGGCCTCGGCCTCGGGGGCTTCCGGCGCGGCTGCGGCGGTCTTGCGGGTGCGGCGGGGCTTGGTCTCCGTGCCTTCCGCGGTGTCCACGGCGGCCTCGGCGGCTGCTGCGGTCTTGCGGGTCCGGCGCGGCTTGGCCTTGGCCTCGGCCTCGGGGGCTTCCGGCGCGGCTGCGGCGGTCTTGCGGGTGCGGCGGGGCTTGGTCTCCGTGCCTTCCGCGGTGTCCACGGCGGCCTCAGCGGCTGCGGCGGTCTTGCGGGTGCGGCGCGGCTTGGCCTCGGCCTGGGGCTCCGCTTCGGTCGCTTCCGGTGCGGCAGCCGTGGTCTTGCGGGTCCGGCGCGGCTTGGCCTCGGCCTCGGCCTCGGGGGCTTCCGGCGCGGCTGCGGCGGTCTTGCGGGTGCGGCGCGGCTTGGCCTCGGCCTGGGGCTCCGCTTCGGTCGCTTCCGGTGCGGCAGCCGTGGTCTTGCGGGTGCGGCGGGGCTTGGTCTCCGTGCCTTCCGCGGTGTCCACGGCGGCCTCGGCGGCTGCTGCGGTCTTGCGGGTGCGGCGCGGCTTCGCCTCGGCCTCGGCCTCCGCCTCGGCGGCACCGGACGGGGCCGGCTCGGCCGTCTTCCGGGTGCGGCG

>NZ_LN997842|13|1|6344920-6345803|CRT
ACGGCGGCCGTGGCCTTACGGGCCCGGCG	CGGCTTGGGCGTCACCTCGGCGCTGTCACCGGCCGCCTCGGCG
GCGGACGCCGCGGTCTTGCGGGTCCGGCG	CCGCGGCTTGACCTCCGGCTCCTCGGTGGCCTGCGCCGGAATCTCCGGAGCAGCC
GCCTCGGCGACGGCCTTACGGGTCCGCCG	TGCCTTCGGAGCGGCGACGGCTTCCCCGTCGACGGCGTCCACG
GCGGCGGTCGCGGCCTTCCGGGTGCGGCG	CGGCTTGGCCTCGGCCTCGGGGGCTTCCGGC
GCGGCTGCGGCGGTCTTGCGGGTGCGGCG	GGGCTTGGTCTCCGTGCCTTCCGCGGTGTCCACGGCGGCCTCG
GCGGCTGCTGCGGTCTTGCGGGTCCGGCG	CGGCTTGGCCTTGGCCTCGGCCTCGGGGGCTTCCGGC
GCGGCTGCGGCGGTCTTGCGGGTGCGGCG	GGGCTTGGTCTCCGTGCCTTCCGCGGTGTCCACGGCGGCCTCA
GCGGCTGCGGCGGTCTTGCGGGTGCGGCG	CGGCTTGGCCTCGGCCTGGGGCTCCGCTTCGGTCGCTTCCGGT
GCGGCAGCCGTGGTCTTGCGGGTCCGGCG	CGGCTTGGCCTCGGCCTCGGCCTCGGGGGCTTCCGGC
GCGGCTGCGGCGGTCTTGCGGGTGCGGCG	CGGCTTGGCCTCGGCCTGGGGCTCCGCTTCGGTCGCTTCCGGT
GCGGCAGCCGTGGTCTTGCGGGTGCGGCG	GGGCTTGGTCTCCGTGCCTTCCGCGGTGTCCACGGCGGCCTCG
GCGGCTGCTGCGGTCTTGCGGGTGCGGCG	CGGCTTCGCCTCGGCCTCGGCCTCCGCCTCGGCGGCACCGGACGGG
GCCGGCTCGGCCGTCTTCCGGGTGCGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN997842.1\|WP_059252469.1\|6355749_6356820_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_LN997842.1\|WP_086698343.1\|6342800_6343706_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|224349
NZ_LN997842.1\|WP_059252458.1\|6339933_6340575_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059252455.1\|6336276_6337401_-\|magnesium-and-cobalt-transport-protein-CorA	unknown	unknown	gnl\|CDD\|213364
NZ_LN997842.1\|WP_059255221.1\|6352651_6353683_+\|DUF3152-domain-containing-protein	unknown	unknown	gnl\|CDD\|371483
NZ_LN997842.1\|WP_059252456.1\|6337859_6338444_+\|suppressor-of-fused-domain-protein	unknown	unknown	gnl\|CDD\|377450
NZ_LN997842.1\|WP_055706876.1\|6349400_6349628_-\|DUF3107-domain-containing-protein	unknown	unknown	gnl\|CDD\|378634
NZ_LN997842.1\|WP_094373214.1\|6343719_6344598_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_LN997842.1\|WP_059252470.1\|6356816_6357815_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_LN997842.1\|WP_059252465.1\|6349762_6350404_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_LN997842.1\|WP_059252459.1\|6340813_6341671_+\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223686
NZ_LN997842.1\|WP_059252466.1\|6350608_6350842_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059252468.1\|6354026_6355745_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173871
NZ_LN997842.1\|WP_059252464.1\|6348935_6349205_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059252454.1\|6335727_6336243_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059252453.1\|6334843_6335578_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059252460.1\|6341753_6342359_+\|MarC-family-protein	unknown	unknown	gnl\|CDD\|225006
NZ_LN997842.1\|WP_059252457.1\|6338496_6339729_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341027
NZ_LN997842.1\|WP_079081136.1\|6348052_6348808_+\|tRNA-2-methylthio-N6-isopentenyl-adenosine(37)-hydroxylase-MiaE-like-protein	unknown	unknown	gnl\|CDD\|205967
NZ_LN997842.1\|WP_059252467.1\|6351041_6352040_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669

Protein	Function_ID	Function_description	E-value
NZ_LN997842.1\|WP_059252469.1\|6355749_6356820_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.03713e-75
NZ_LN997842.1\|WP_086698343.1\|6342800_6343706_+\|NYN-domain-containing-protein	gnl\|CDD\|224349	COG1432, COG1432, Uncharacterized conserved protein [Function unknown].	2.12983e-06
NZ_LN997842.1\|WP_059252455.1\|6336276_6337401_-\|magnesium-and-cobalt-transport-protein-CorA	gnl\|CDD\|213364	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily. This bacterial subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Mg2+ transporter Mycobacterium tuberculosis CorA (which also transports Co2+). Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	2.01291e-170
NZ_LN997842.1\|WP_059252456.1\|6337859_6338444_+\|suppressor-of-fused-domain-protein	gnl\|CDD\|377450	pfam05076, SUFU, Suppressor of fused protein (SUFU). SUFU, encoding the human orthologue of Drosophila suppressor of fused, appears to have a conserved role in the repression of Hedgehog signaling. SUFU exerts its repressor role by physically interacting with GLI proteins in both the cytoplasm and the nucleus. SUFU has been found to be a tumor-suppressor gene that predisposes individuals to medulloblastoma by modulating the SHH signaling pathway. Genomic contextual analysis of bacterial SUFU versions revealed that they are immunity proteins against diverse nuclease toxins in polymorphic toxin systems.	6.86994e-32
NZ_LN997842.1\|WP_055706876.1\|6349400_6349628_-\|DUF3107-domain-containing-protein	gnl\|CDD\|378634	pfam11305, DUF3107, Protein of unknown function (DUF3107). Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.	1.09573e-34
NZ_LN997842.1\|WP_094373214.1\|6343719_6344598_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	8.82962e-14
NZ_LN997842.1\|WP_059252470.1\|6356816_6357815_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.12429e-93
NZ_LN997842.1\|WP_059252465.1\|6349762_6350404_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.8697e-16
NZ_LN997842.1\|WP_059252459.1\|6340813_6341671_+\|PHP-domain-containing-protein	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	1.10762e-49
NZ_LN997842.1\|WP_059255221.1\|6352651_6353683_+\|DUF3152-domain-containing-protein	gnl\|CDD\|371483	pfam11350, DUF3152, Protein of unknown function (DUF3152). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	5.02002e-74
NZ_LN997842.1\|WP_059252468.1\|6354026_6355745_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173871	cd08506, PBP2_clavulanate_OppA2, The substrate-binding domain of an oligopeptide binding protein (OppA2) from the biosynthesis pathway of the beta-lactamase inhibitor clavulanic acid contains the type 2 periplasmic binding fold. Clavulanic acid (CA), a clinically important beta-lactamase inhibitor, is one of a family of clavams produced as secondary metabolites by fermentation of Streptomyces clavuligeru. The biosynthesis of CA proceeds via multiple steps from the precursors, glyceraldehyde-3-phosphate and arginine. CA possesses a characteristic (3R,5R) stereochemistry essential for reaction with penicillin-binding proteins and beta-lactamases. Two genes (oppA1 and oppA2) in the clavulanic acid gene cluster encode oligopeptide-binding proteins that are required for CA biosynthesis. OppA1/2 is involved in the binding and transport of peptides across the cell membrane of Streptomyces clavuligerus. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_LN997842.1\|WP_059252460.1\|6341753_6342359_+\|MarC-family-protein	gnl\|CDD\|225006	COG2095, MarC, Multiple antibiotic transporter [Intracellular trafficking and secretion].	1.28092e-40
NZ_LN997842.1\|WP_059252457.1\|6338496_6339729_-\|MFS-transporter	gnl\|CDD\|341027	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily. This family is composed of Bacillus subtilis multidrug efflux protein YfmO, bacillibactin exporter YmfD/YmfE, uncharacterized MFS-type transporter YvmA, and similar proteins. YfmO acts to efflux copper or a copper complex, and could contribute to copper resistance. YmfD/YmfE is involved in secretion of bacillibactin. The YfmO-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.74194e-89
NZ_LN997842.1\|WP_079081136.1\|6348052_6348808_+\|tRNA-2-methylthio-N6-isopentenyl-adenosine(37)-hydroxylase-MiaE-like-protein	gnl\|CDD\|205967	pfam13794, MiaE_2, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like.	2.6772e-94
NZ_LN997842.1\|WP_059252467.1\|6351041_6352040_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.49185e-27

>NZ_LN997842.1|WP_094373214.1|6343719_6344598_-|alpha/beta-hydrolase
MSRPATFVPPPGARAYPLRTARGEFAVVDAPAAVGVEPRGVALLLPGFTGSKEDFNPLHVPLAERGYRTVAVDGRGQFESDGPATDESAYAQEELARDVLAQAEALGGPVHLLGHSLGGQIARAAVLLDHTPFVSFTLMASGPAQISTSQQERVKLLRDALAVLGMAEVWEAMRAMEPPEETETPALDPGLDERDDLRRRWLGTKPAQLIATGRQLCTEPDRVAELASVPLPFHVLSGARDDTWPLPLLDDMAVRLKARRTVIEGAEHSPNTDRPLETARALADFWDGTARS
>NZ_LN997842.1|WP_086698343.1|6342800_6343706_+|NYN-domain-containing-protein
MEAMNDDLAALGARIDRTNELLERMLAEVAKTPSTHAIFVDAGYLYAAAGRLIAGTEDRRAFDVDAEGLIDALIDKARTIFADSRLLRVYWYDGARRRIHTAEQQSIAELPDVKVRLGNLNANNQQKGVDSLIRSDLESLARHRAISDAALLGGDEDLVSAVEAAQGYGARVHLWGIEAPEGRNQAEPLLWEVDSQRTFDLEFFKPYVSRRTAAAYDAAAGTRPTREDVRFVGAQIAARWLASRGREALVELFPGHPYLPGSVDQDLLVEAEALLQYSLRGQADLRRALRDGFWEHLQAQF
>NZ_LN997842.1|WP_059252460.1|6341753_6342359_+|MarC-family-protein
MFDIAVFGSLFLTLFVIMDPPGITPIFLALTAGRPAKVQRRMAFQAVCVAGGVIAVFGVLGHQILDYLHVSVPALMIAGGLLLLLIALDLLTGKTDEPKQTKDVNVALVPLGMPLLAGPGAIVSVILAVQKADSVSMQLSVWSAILAIHVVLWLVMRYSLLIIRVIKDGGVVLVTRLAGMMLSAIAVQQIINGVTQVIRGS
>NZ_LN997842.1|WP_059252459.1|6340813_6341671_+|PHP-domain-containing-protein
MRIDLHCHSTASDGTDTPAELVRKAAAAGLDVVALTDHDTTRGYGEAIAALPEGLTLVTGAELSCRLDGVSMHMLAYLFDPAEPALLAERELVRDDRVPRAKGMIAKLNALGVPVTWEQVERIAAGGSVGRPHVASALVELGVVPTVSDAFTEEWLADGGRAFVEKHETDPFEAIRLVKAAGGVCVFAHPAAAKRGRTVPEFRIAELAEAGLDGIEVDHMDHDADARDRLRGLAKELGLLVTGSSDYHGSRKTVALGAYTTDPEVYGEITRRATGAFPVPGTGGA
>NZ_LN997842.1|WP_059252458.1|6339933_6340575_+|hypothetical-protein
MRGEPSCPRCGGRVRAPGLFVDAWQCDVHGTVYPLQPVIPPSVEALNVVVHRTQVPVWMPWPLPVGWLFTGVAYAGDDRSGGRATAVACSGPGPLGGPGELILIAEELGVGLGARYAGIDGPDPGPYMNVEKPPQAKVLAAGRPTPLWHVFRTPDDRAVFAGEALGMWLWAVMWPEQAGLLMYDELVLTDLRDAGAEIDLVPCGALSPRLLRP
>NZ_LN997842.1|WP_059252457.1|6338496_6339729_-|MFS-transporter
MDPFDAGAGGLLRQPKAVWATAGASVVAFMGIGLVDPILPSIAQGLHATASQVSLLFTSYFLITAVAMLLTGFVSSRIGGRKTLLLGLAFVVVFAGLAGTSDTVGQLVGFRAGWGLGNALFVSTALAVIVGAAAGGSAAAILLYESALGLGMACGPLLGAVLGNVSWRYPFFGTATLMAIGFLCITAFLKEQPRPARKTSVLDPLKALGHGGLASAAVSAFFYNYTFFTVLAFTPFVLDMTPYRSGAVFFAWGVLLAVFSVIVAPRMQARFGSLKVLGGSLVLLAADVLVLGYGGHTAAIVCTILSGAFIGVNNTVYTELALGVSDAPRPVASAGYNFVRWFAAAAAPYFAPKIEEWTDVHIPFVVAAVTAVLGAVVVVVRRKALTHEAEELEPKHAAEDGVGVFADRPN
>NZ_LN997842.1|WP_059252456.1|6337859_6338444_+|suppressor-of-fused-domain-protein
MADVLPLVEARLTTALGEPDARAAVTFLGTDRIEVLRFQEGDVVRYATLGMSRHPMTDPTAMLADPVKGPRAELVLSVRAGVADTDKVLRPLAVLAASPQVEGLVVTPGASLDVGGPLWPGAPFTSVLVGEPGGLVEDLELDAPMDPVRFLPLLPMTPNEAAWKRVHGAQALQERWLANGTDLRDPARRSVPLD
>NZ_LN997842.1|WP_059252455.1|6336276_6337401_-|magnesium-and-cobalt-transport-protein-CorA
MSMIRDLRAVVRPSSRVSLRKDTSPSYDTTRAPGTSSAVVDCAVYRDGARVESAGPLSPQEAMRLVRRDGGFVWIGLHEPTEAEFAGIASEFGLHPLAVEDAVQAHQRPKLERYDDSLFTVFKTIHYVEHDRLTATSEVVETGEVMCFTGRDFFITVRHGGQGSLRALRHRLQDDPELLAKGPSAVLHAIADHVVDGYIAVAHAVQDDIDEVETEVFSPGRKGGVSRGVDSARIYQLKREVLEFKRAVAPLLRPMQLLSERPMRLIDPDIQKYFRDVADHLARVQEQVLGFDELLNSILQANLAQASVAQNEDMRKITSWAAIIAVPTMVCGVYGMNFDHMPELHWKYGYPVIMGVTVMLCLGIHRTLKRNGWL
>NZ_LN997842.1|WP_059252454.1|6335727_6336243_-|hypothetical-protein
MTSELLDRALIEEASKKSGLIWVRGAGAPAARALWHVWHEGAVCVVGDGPGEQPLTGLADGGSAEVSVRSKDKGGRLVTFAVTVSELASGSEEWAAAVAELKGKRLNAPDGERMPDRWARECRVLRLVPTGSVAPLPAGSLAESPVPTPATTRGPVPASLHKLLLKGRKKK
>NZ_LN997842.1|WP_059252453.1|6334843_6335578_+|hypothetical-protein
MPQGRTRRTALVTATCALAVTGAMVLSGCGGDDPDAGTNGVGKLPAAKIQAKTRAAADAASAVRLSGTVVTSGRTYRLDMQLKDDGGTGSVTSQGETFKLLRVGRELYLKAGADFWNHADGSDGATGKLDGKYVKVPQGDPSYKKFSGFTDKDVLLEGLLTLHGTLATDGHHTDQSGTRTIRVTGDDGSGGTLDVSLQGTPYPLRLVRAGHAGTLRFSDWGKDFTVEEPAKSETVDYGKQLPTS
>NZ_LN997842.1|WP_079081136.1|6348052_6348808_+|tRNA-2-methylthio-N6-isopentenyl-adenosine(37)-hydroxylase-MiaE-like-protein
MRLMTSSDKPENASAEPAEPTGVAAQDWAQASADPQYRAAVVDLLGALAYGELAAFERLAEDAKLAPTLADKAELAKMASAEFHHFERLRDRLTEIGEEPTAAMDPFVAALDGFHKQTAPSDWLEGLVKAYVGDSIASDFYREVAARLDSDTRELVLAVLDDTGHADFAVEKVRAAIDADPRVGGRLALWARRLMGEALSQSQRVVADRDALSTMLVGGVADGFDLAEVGKMFSRITEAHTKRMAALGLAA
>NZ_LN997842.1|WP_059252464.1|6348935_6349205_-|hypothetical-protein
MILEALGSAVLGLLLAWAATVGLGHRLPARPLVYCTGVAGALFGDFVTHTALGPGTALLSLLGAAAISVASLSLLLRPTGRLRRRSATA
>NZ_LN997842.1|WP_055706876.1|6349400_6349628_-|DUF3107-domain-containing-protein
MEVKIGVQHAPREIVLESGQSVEEVERVVAEALAGKTGLLSLQDEKGRKVLVPTDRLAYVDIGEPTVRKVGFGAL
>NZ_LN997842.1|WP_059252465.1|6349762_6350404_-|TetR/AcrR-family-transcriptional-regulator
MTAIEQTEAARPRGTRLPRRARRNQLLGAAQEVFVAQGYHAAAMDDIAERAGVSKPVLYQHFPGKLDLYLALLDQHCESLIQSVRSALASTTDNKQRVRATMDAYFAYVEDDGGAFRLVFESDLTNEPAVRERVDKVTNECAEAICDVIAEDTGLSRAESMLLASGLGGLAQVVARSWLHSDRSVPRDQAVQLLTSLAWRGIAGFPLHGTEHH
>NZ_LN997842.1|WP_059252466.1|6350608_6350842_-|hypothetical-protein
MAYDPIEPDAIEDIEDLEADAVQERDVEAPEVDAAEQHADIAPDRDDPLTGMDPDRANVADLVEQARVVALDEDDYR
>NZ_LN997842.1|WP_059252467.1|6351041_6352040_+|alpha/beta-hydrolase
MSSTESPSVPAASVLPRVAPVRVGEGERLRSVGLPGVTLSVRSRRPAREGLPPALYVHGLGGSSQNWSSLMAELDGVVDSEAVDLPGFGDSPPPDDGDYSVTGHARAVIRYLDAAGRGPVHLFGNSLGGAVTTRVAAVRPDLVRTLTLVSPALPELRVQRTAVPTGLLAVPGIAALFTRLTKEWTAEQRVRGVMALCYGDPARVSPEAFRHAVEELERRLRLPYFWDAMARSARGIVNAYTLGGQHGLWRQAERVLAPTLLIYGGRDQLVGFRMAAKAARAFRDSRLLTLPDAGHVAMMEYPDVVAGAFRDLLAQAANGSGEGAGAVVDARS
>NZ_LN997842.1|WP_059255221.1|6352651_6353683_+|DUF3152-domain-containing-protein
MLPRQRQAEPGAPGPAGGRRRRGPRQEYLDAFDGAAAGTQGIRGAKGGKSAQDTQDAQDTSDSGAAASGAGVPAQRGGSKGWAYTGIAAAAVTTVLAVVVAGQVTHGQEGDARSRSAAGRAPDARAPGDASGAPAPATVPSAAPLTYDQKMGKKYPLGATLTGPGTFDAVPGFDKAPGTGQKYRYRVDVEQGLGLDGALFAEAVQKTLNDKRSWAHGGARTFERVSSGKPDFVITLASPGTTAKWCAKSGLDTTEDNVSCDSAATERVMINAYRWAQGSTTYGDRIHAYRQMLINHEVGHRLGNGHVTCQKDGEPAPVMQQQTKFLDHDGIHCLPNPWPYPAS
>NZ_LN997842.1|WP_059252468.1|6354026_6355745_+|ABC-transporter-substrate-binding-protein
MRQPSVIARRVAAASVSLVVAAGAAACGPEDSDAKGSGGDSAPHKGGTLTVLNSQPQTDFDPARLYTSGGGNVPSLVFRTLTTRNRESGEAGAKVVPDLATDTGRPNKDATVWTYTLKKGLKYEDGTPITSADIKYGIERSFAPELSGGAPYLRDWLVGAADYQGPYKDKKGLSAIETPDSRTIVFHLNKPEGEFPYLATQTQFTPVPKSKDTGTKYEAHPVSSGPYKVVKNENDGEHLVLERNPHWSAATDAERKAYPDTIDVRSGLDSSVINQRLSASQGADAAAVTTDTNLGPAELAKVTGDKKLAARVGTGHFGYTNYLAFNPKVKPFDNPKVRQAVAYAIDRSSVVNAAGGSALAEPATTFLPNQKSFGHTPYDPFPAGASGNPAKAKELLAQAGYKNGLSITLTHSNEKDFETSPEIATAVQDALKKAGITVKLQGLEDNDYRDKIHSVQDEPGLFLAHWGADWPSGGPFLAPIFDGRQIVKDGANFNTGQLNDKSVNDEIDAINKLTDLDAAAQRWGALDKKIGDKALVVPLFHPVYKRLYGSAVKNVVISDWTGVLDVSRVAVK
>NZ_LN997842.1|WP_059252469.1|6355749_6356820_+|ABC-transporter-permease
MSEALAAVGTAGTDPSVPAVSGARQFWRRLRAQRAALGAAAVVALLVLVALAAPLLTALEGQDPTTYHPALVDSARGGVPIGSFGGIGADHWLGVEPQTGRDMFARLVYGARVSLGVALAATMIQVAIGVAAGVAAALGNRWVDQLLSRATDVIVSMPLMIMALALLAIVPSSFPRPVLVTLVIGLIGWGTIAKIVRAQTLSLKGLDYVSAARLSGWGTWRVARRELLPGLAAPVITYAALLVPTNISVEAALSFLGVGVKPPTPSWGQMLTAADVWYQAAPQYLLLPAGALFVTVLALTVLGDGVRTALDPRAASRLRVGTGRKEAAAQKGAAQDTAAQGSAAQESAATGKEASA
>NZ_LN997842.1|WP_059252470.1|6356816_6357815_+|ABC-transporter-permease
MSGFGGFLLRRAAGTVVTLLAISVIVYVVFYVTPGNVAQITCGPRCSPEQVHQVAEQLKLGDPLYVRYWHFLQGLFVGQDFSTGTSVEHCAAPCLGQSYQTGQQVLDIILAKLPVSVSLVLGAMVLWLLLGIGTGVLSAWRRGRLSERVLTAVTLAGTATPVFVIGLVLMIVVCGELQLLPFPQYVNFSDDPEQWAWNLLLPWLSLALIEAASFARLTRAAMLETLAEDHIRTFRAYGVAERSVVGRHALRGALAPVIALNANNVGSAIGGAVLTETLFGLPGIGQELVHAVKVVDLPVVVGMVLVTGFFVVLANAVADVLYAVADRRVVLA

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Crispr_ID: NZ_LN997842_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN997842_14

6806985-6807128

Orphan

Consensus_repeat	Method
GCCCCCGTTGTGTAGCGGCCTAGCACGCTGCCCTCTCAAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN997842_14

>merge|NZ_LN997842|14|6806985-6807128|CRISPRCasFinder
GCCCCCGTTGTGTAGCGGCCTAGCACGCTGCCCTCTCAAGGCAGTAGCGCCGGTTCGAATCCGGTCGGGGGTACTGATCTCGATCTTGTCGGGATCGCTAGGGCCCCCGTTGTGTAGCGGCCTAGCACGCCGCCCTCTCAAGGC

>NZ_LN997842|14|13|6806985-6807128|CRISPRCasFinder
GCCCCCGTTGTGTAGCGGCCTAGCACGCTGCCCTCTCAAGGC	AGTAGCGCCGGTTCGAATCCGGTCGGGGGTACTGATCTCGATCTTGTCGGGATCGCTAGG
GCCCCCGTTGTGTAGCGGCCTAGCACGCCGCCCTCTCAAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN997842.1\|WP_059252802.1\|6814169_6814940_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_LN997842.1\|WP_059252796.1\|6809720_6811145_+\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NZ_LN997842.1\|WP_059252798.1\|6812008_6812239_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_086011581.1\|6798074_6798497_-\|roadblock/LC7-domain-containing-protein	unknown	unknown	gnl\|CDD\|367422
NZ_LN997842.1\|WP_059252789.1\|6797008_6797584_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|225138
NZ_LN997842.1\|WP_059252801.1\|6813377_6814016_-\|2-phospho-L-lactate-guanylyltransferase	unknown	unknown	gnl\|CDD\|274643
NZ_LN997842.1\|WP_059252790.1\|6802824_6803019_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059252800.1\|6813115_6813319_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_107118031.1\|6793371_6796686_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|377989
NZ_LN997842.1\|WP_086697943.1\|6806069_6806801_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
NZ_LN997842.1\|WP_059252791.1\|6803219_6804005_+\|FAA-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_LN997842.1\|WP_059252797.1\|6811150_6811744_+\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NZ_LN997842.1\|WP_023546516.1\|6808796_6809513_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_LN997842.1\|WP_059252799.1\|6812375_6813044_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259858
NZ_LN997842.1\|WP_059252793.1\|6805543_6805828_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059252795.1\|6808131_6808629_+\|DUF4188-domain-containing-protein	unknown	unknown	gnl\|CDD\|316352
NZ_LN997842.1\|WP_009190816.1\|6797564_6797963_-\|DUF742-domain-containing-protein	unknown	unknown	gnl\|CDD\|283084
NZ_LN997842.1\|WP_059252794.1\|6807405_6808050_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133407
NZ_LN997842.1\|WP_079081157.1\|6803997_6805479_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_LN997842.1\|WP_107118032.1\|6798497_6802253_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|377989

Protein	Function_ID	Function_description	E-value
NZ_LN997842.1\|WP_059252802.1\|6814169_6814940_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	6.60017e-46
NZ_LN997842.1\|WP_059252796.1\|6809720_6811145_+\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_LN997842.1\|WP_086011581.1\|6798074_6798497_-\|roadblock/LC7-domain-containing-protein	gnl\|CDD\|367422	pfam03259, Robl_LC7, Roadblock/LC7 domain. This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.	3.73498e-23
NZ_LN997842.1\|WP_059252789.1\|6797008_6797584_-\|ATP-binding-protein	gnl\|CDD\|225138	COG2229, COG2229, Predicted GTPase [General function prediction only].	1.34117e-45
NZ_LN997842.1\|WP_059252801.1\|6813377_6814016_-\|2-phospho-L-lactate-guanylyltransferase	gnl\|CDD\|274643	TIGR03552, F420_cofC, 2-phospho-L-lactate guanylyltransferase. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	8.45175e-46
NZ_LN997842.1\|WP_107118031.1\|6793371_6796686_-\|HAMP-domain-containing-protein	gnl\|CDD\|377989	pfam08376, NIT, Nitrate and nitrite sensing. The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.	8.35805e-25
NZ_LN997842.1\|WP_086697943.1\|6806069_6806801_+\|HAD-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	1.96057e-38
NZ_LN997842.1\|WP_059252791.1\|6803219_6804005_+\|FAA-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	3.67787e-102
NZ_LN997842.1\|WP_059252797.1\|6811150_6811744_+\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	4.55736e-128
NZ_LN997842.1\|WP_023546516.1\|6808796_6809513_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	7.76445e-46
NZ_LN997842.1\|WP_059252799.1\|6812375_6813044_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259858	cd13836, IHF_B, Beta subunit of integration host factor (IHFB). This subfamily consists of the beta subunit of integration host factor (IHF) and IHF-like domains. IHF is a nucleoid-associated protein (NAP) that binds and sharply bends many DNA targets in a sequence specific manner. It is a heterodimeric protein composed of two highly homologous subunits IHFA (IHF-alpha) and IHFB (IHF-beta). It is known to act as a transcription factor at many gene regulatory regions in E. coli. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups). IHF is also involved in formation as well as maintenance of bacterial biofilms since it is found in complex with extracellular DNA (eDNA) within the extracellular polymeric substances (EPS) matrix of many biofilms.	5.9765e-22
NZ_LN997842.1\|WP_059252795.1\|6808131_6808629_+\|DUF4188-domain-containing-protein	gnl\|CDD\|316352	pfam13826, DUF4188, Domain of unknown function (DUF4188).	1.59364e-45
NZ_LN997842.1\|WP_009190816.1\|6797564_6797963_-\|DUF742-domain-containing-protein	gnl\|CDD\|283084	pfam05331, DUF742, Protein of unknown function (DUF742). This family consists of several uncharacterized Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.	1.92012e-38
NZ_LN997842.1\|WP_059252794.1\|6807405_6808050_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133407	cd04780, HTH_MerR-like_sg5, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 5), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	1.77649e-30
NZ_LN997842.1\|WP_079081157.1\|6803997_6805479_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_LN997842.1\|WP_107118032.1\|6798497_6802253_-\|HAMP-domain-containing-protein	gnl\|CDD\|377989	pfam08376, NIT, Nitrate and nitrite sensing. The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.	3.78097e-37

>NZ_LN997842.1|WP_086697943.1|6806069_6806801_+|HAD-family-hydrolase
MTIRAVVWDVDDTLFDYTTADRAGMGAHLVAEGLLARYGSAEEALVRWREITDRQWARYAAGETTFQDQRRDRVRLFLDEELSDAEADAWFQRYVGHYEAAWSLFPDVLPALEALAATHRHAVLSNSSITVQEHKLRTLGLLDRFESVLCAAELGVSKPEAGAFLASCAALGLPPHEVAYVGDHPEIDGRGAAEAGLLSVWIDRGAAYARAAGEVVAHRIATLAELPALVRADTRFGAPSTFG
>NZ_LN997842.1|WP_059252793.1|6805543_6805828_-|hypothetical-protein
MNQYRVQFTVEARPTCDALPAERRAQVDRAVRVLARDPFRKTSTAQLGPDEHLRRAYVGPGVKLEYMAVGAVMVVVGLEIFDERAYLVDEADAQ
>NZ_LN997842.1|WP_079081157.1|6803997_6805479_+|glutamate--tRNA-ligase
MASAPGSVRVRFCPSPTGNPHVGLVRTALFNWAFARHHGGTLVFRIEDTDAARDSEESYTQLLDAMRWLGFDWDEGPEVGGPHAPYRQSQRMDIYRDVAQKLLDGGYAYHCYCSQEELDTRREAARAAGRPSGYDGHCRELTAGQVEEYQAQGRTPIVRFRMPDETITFTDLVRGELTFTPENVPDYGIVRANGAPLYTLVNPVDDALMEITHVLRGEDLLSSTPRQIALYKALIELGVARRIPEFGHLPYVMGEGNKKLSKRDPQSSLNLYREQGFLPEGLLNYLSLLGWSLSADKDIFTIEEMVAAFDISDVNPNPARFDLKKCEAINGDHIRLLDVKEFTERCRPWLKAPFAPWAPEDFDEARWQAIAPHAQTRLKVLSEITDNVDFLFLPEPVFDEASWTKAMKEGSDALLRTAREKLESADWTSAESLKEAVLAAGEAHGLKLGKAQAPVRVAVTGRTVGLPLFESMEILGKEKTLARIDAALAKLTA
>NZ_LN997842.1|WP_059252791.1|6803219_6804005_+|FAA-hydrolase-family-protein
MRIARFSIDGNVAFGAVEGDKQDELVLDIIKGIPFADYELSGTKVPLGKVRLLPPVLPNKVVAFGRNYREHAQELGNAVPEAPFAFFKPSTSVIGPGDDIQYPSFTEELHHEAELAVVIGRMCREVPRERVKDVVFGYTCANDITARDVQRREKQWARAKGFDSACPLGPWVETDLSVDAANDLTIQLTVNGEQRQLGRTSEMIHPIEDLIVNISEAMTLLPGDVILTGTPAGVGPLHVGDEVAVTIEGIGTLTNKVVKRG
>NZ_LN997842.1|WP_059252790.1|6802824_6803019_+|hypothetical-protein
MKTTMMFRTIANPRRTTLAHLKDAGELHTPELPEHSVDLPAQTANPRRTVLVDVPAGSGAAAGE
>NZ_LN997842.1|WP_107118032.1|6798497_6802253_-|HAMP-domain-containing-protein
MQGRFKRDGSASAEPEPHGGTDRGSSPPHAQNPGQTPTGDGSGRPGASASSAAPKAAPTSNVVPTVKPAQAPSYAGSRLALRNWRISTRLVSLLALPVVAATSLGALRINENMNDIQQLDNMKLLTDMTKQATELAAALQEERDQSAGPLAHGGLKANDYQIKGYQQKTDRARENFLDASEQIDAASKDGNLQGVRDALVGLANQLDDLAKIRKSAYTSKKNATQTVESYHRLITQLIGLSQDMAEASSNPEMISRTRALAAFSTAKEYASVQRAMIASALPATTDIKGDLSENDRLYGQSAYESEGSELAIFRKIYASQNAEELLKPIDEGNATIEAADTYAKRSFESPDGLQQLPARSYKDWVDDSSTKIEQMKKIEHTLLEEMEQKARELKSATQRDAIISGALILIVLGVSLVGAFVVARSMIRSLRRLQETATKVAQDRLPELVKQLSESDPQDVDTSVESVGVHSRDEIGQVAAAFDDVHREAVRLAAEQALLRGNVNAMFTNLSRRSQGLIQRQLSLISELESREADPDQLSSLFKLDHLATRMRRNGENLLVLAGEEPGRRWTRPVPLVDVLRAAASEVEQYERIELAAVPTTEVAGRVVNDLVHLLAELLENATSFSSPQTKVKVTGHALPDGRVLIEIHDTGIGLSPEDLAAINERLASPPTVDVSVSRRMGLFVVGRLSQRHGIRIQLRPSDSGGTTALVMLPVDVAQGNKKPAPGKPGAPMTSGGPAAAQAAAGAAAARRQTGAKGGGLGAAPAGGGLLGGGPAPRGQVGSAQGPRAALPGAGQGGRPGAPGGARGPQGGPGGPQQNRPAPAGFGGQTPGAPQGLQAAAPGGPQQDAFGGRAPKRSGAPSDQGRQPQLPPRGGPRAELPGGDPQSRTPDWNDGRPPLSRASLDTPRGHDEQDPAQTAHMPRVDDRQGPGSTAEIPRIDAQGPAATGEFPRAELNGASHTGQFARPDDSRQTGQFAQPDQAQQDSGSFVRPDVFGTPAPGLTDNGGRHTGQFPAQQSPQSPQAYDGVYDGGSTGQHALPGRQDPGHTGQFERSQPAGRADFGTPRPPAPQQRPARQEPGSRGAAQRPDAGRGPGDNWALPPASGPGDGRTPLYDTLETNWFHGGQQQDNAPAQQQQQQQQPQAPAPQRSASDTGSWRTSPNDELVRQAERVRQPAAGGVTTSGLPRRVPRANLVPGTAQQQQHQSGPQVSRAPDDVRGRLTNLRRGIAQGRQAGSGQTGSFPSPTHQQER
>NZ_LN997842.1|WP_086011581.1|6798074_6798497_-|roadblock/LC7-domain-containing-protein
MSPMSQAAQNLNWLITNFVDNTPGVSHTVVVSADGLLLAMSEGFPRDRADQLAAVASGLTSLTAGASRIFEGGTVAQTVVEMERGFLFLMSISDGSSLAVLAHPEADIGLVGYEMALLVDRAGAVLTPDLRAELQGSLLH
>NZ_LN997842.1|WP_009190816.1|6797564_6797963_-|DUF742-domain-containing-protein
MTPPTAHHDPYAEPYGDEGDQPLVRPYAMTGGRTRPRYQLAIEALISTTADPAALMGLLPEHQRICHLCREVKSVAEVSALLAMPLGVARILVADLAEAGLVAIHQPGGDENNGGAPDVTLLERVLSGLRKL
>NZ_LN997842.1|WP_059252789.1|6797008_6797584_-|ATP-binding-protein
MDFASSDAGRATTSAKIVVAGGFGVGKTTFVGAVSEINPLRTEAVMTSASAGIDDLTHTGDKTTTTVAMDFGRITLDQDLILYLFGTPGQDRFWFMWDDLVRGAIGAVVLVDTRRLADCFPAVDYFENSGLPFVIALNGFDGQQPYSPDEVREALQIGPDTPIITTDARHRADAKSALITLVEHALMARLK
>NZ_LN997842.1|WP_107118031.1|6793371_6796686_-|HAMP-domain-containing-protein
MVDGEPGSERLRHDEGADRREVVGRVRRSKNGPEPSARGNFTPPPRAAAPTPVPGAEPAATPAPSGGRLSPRNWRVPTRLNAILLIPVAVGLVMGGFQVKSSIDTWQEARDAENTARLVRAALTYADALENERDITAAPLLLKKKDATGKTTVDEARKATDQAAAAFEEATKSMPSEPGLERRLKLFHEVEPKLTQLRQVAYTAKTTGVQTEEGYVDISHPLMEFANELGLGTGNITSYGRTVYAISLTKAALSLERSIGTHLLVKPGPDAPNLATQRVSLSSYAYLERIAREEYIGGGTEADAQKLTDAENKIKTDAAALAQKAKASDPKYVAPPSDPSKMVAAVATMKDTSTLTRDQLAAAGVTADNWWAVNTLKYKAYRQIESDMADKAVNEASTIADDAKTSAFITGAVVVIALLAAFLLAGMVARQMSRSMRQLRNAAFGIAEQRLPMLVDQLSRTDPGRVDTRVAPIPITTKDEIGEVARAFDQVHREAVRLASEQALLRGNINAIFTNLSRRNQSLIEGQLTLITDLENNEADPDQLENLFKLDHLATRMRRNGENLLVLAGEEPGRRWDQPVPLIDVLRAASSEVEQYERIELSGVPEAEIHGRAVTDLVHLLAELLENATTFSSPQTKVRVTATRLPDGRVMIEIHDKGIGLTAEDFADINHKLANPPTVDAAISQRMGLFVVGRLSDRHGIRVQLRPSGEQAGTTSLVMLPDAITHGGGGEAPLDREEFTVSQIIPEQQFQGEDFGQQQPLRTAAELGFDDSRYTEVPDDIRGLDPVGRSLMREERRAALEAQTHGQQPAEQHQESAEAPTGYTDPFSGQHPTYQEQPQQAYDEQPRQAYEAPAYEEQQQHTSYEQQYEQSYDEQYYAPNGEQPQHDGYASGGGYPEPASGYAEPAQTPSYQDDWPQQDGYRNGYPAQYAPETESSQAADASERNRVGFDRPGTASPAAHELTDAGLPRRGSTASGSQGAGSANGTARAQQEAPAPAPGDAPGASGESSWRSANDERWQQAAQLRKPKAGGVTASGLPRRVPKANLVEGSAETTPQGGPQVSRAPEDVRGRLSNLRRGVQRGRSAGSETNGQGFGPDSTYNQER
>NZ_LN997842.1|WP_059252794.1|6807405_6808050_-|MerR-family-transcriptional-regulator
MRLAELSRRSGVATATIKYYLREGLLPPGRQINTTTAEYDEEHLRRLRLVRAMIQVGRVPVATVREVLRHVDDDSLGLTVRLGAALWALPQVPEPEEDDAFVRAAHREAEELLDLLGWSNAKLLTTISPAYRSLVVAVAAFRRLGYDWETELLASYARLMHETAKLDLDFVETHPSEAEKVETAVLGTVLTEPILRALRRLAQEEESARRYGFE
>NZ_LN997842.1|WP_059252795.1|6808131_6808629_+|DUF4188-domain-containing-protein
MVSRTTADARGDVVVLLIGMRINRFWAVHVWLPVMLAMFRMLRELEKDPGRGLRAKVMLSASPRTYYVVQYWESKEKLYAYATAPEAFHHKAWARLNRKERTGKLRGEVGIWHEAYVVPEGSYEAIYGDMPATGLAAAYGQVPLEKRGRYAKDRFAHRSGEGARA
>NZ_LN997842.1|WP_023546516.1|6808796_6809513_-|IclR-family-transcriptional-regulator
MDNSSGVGVLDKAALVLSALESGPATLAGLVGATGLARPTAHRLAVALEHHRMVARDMQGRFILGPRLAELAAAAGEDRLLATAGPVLTHLRDVTGESAQLYRRQGDMRICVAAAERLSGLRDTVPVGSTLTMKAGSSAQILLAWEEPERLHRGLQGARFTATALSGVRRRGWAQSIGEREPGVASVSAPVRGPSNRVVAAVSVSGPIERLTRHPGRMHAQAVIDAAARLSEALRRSG
>NZ_LN997842.1|WP_059252796.1|6809720_6811145_+|3-isopropylmalate-dehydratase-large-subunit
MGRTLAEKVWDDHVVRRAEGEPDLLYIDLHLLHEVTSPQAFDGLRKSGRKVRRLDLTIATEDHNTPTLDIDKPIADPVSRAQLETLRRNCAEFGVRLHPLGDVEQGVVHVVGPQLGLTQPGTTVVCGDSHTSTHGAFGALAFGIGTSQVEHVLATQTLPMARPKTMAITVEGELPEGVTAKDLILAIIAKIGTGGGQGYILEYRGSAIEKLSMEARMTICNMSIEAGARAGMIAPDETTFAYLKGRPHAPEGADWDAAVAYWKTLRTDDDAVFDAEVVIDAAELSPFVTWGTNPGQGAPLSANVPDPASYEDASERLAAEKALEYMGLAAGQPLRSINVDTVFVGSCTNGRIEDLRAAADILRGRKVADGVRMLVVPGSARVGLQAVSEGLDVVFKEAGAEWRHAGCSMCLGMNPDQLAPGERSASTSNRNFEGRQGKGGRTHLVSPQVAAATAVLGHLASPADLTDVPAPAGV
>NZ_LN997842.1|WP_059252797.1|6811150_6811744_+|3-isopropylmalate-dehydratase-small-subunit
MEAFTTHTGRAVPLRRSNVDTDQIIPAHWLKKVTRDGFEDGLFEAWRKDPEFVLNRPERQGATVLVAGPDFGTGSSREHAVWALQNYGFKAVISSRFADIFRGNSLKNGLLTVVLEQKIVDALWELTEQDPTAEVTVDLEAREVRAGGITASFELDENSRWRLLNGLDDISITLRNEADIAAYEGKRPAYKPRTLQV
>NZ_LN997842.1|WP_059252798.1|6812008_6812239_+|hypothetical-protein
MEHDGQLQLYTAVANQLKEAHARVRALQVPEGVRMALTRKLLVITAAAKHDLADAARRLDRFTADLDAGRIPEGDR
>NZ_LN997842.1|WP_059252799.1|6812375_6813044_+|HU-family-DNA-binding-protein
MNKAQLVEAIADKLGGRQQAADAVDHVLDAIVRAVVAGERVSVTGFGSFEKVDRPARYARNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPRGGEVSVKKAPKGSLTGGAAATVKKAAAKKTTKAAAKKAATTKKAAPAKKTTAAAKKTTAKKAPAAKKTTTAAAAKTTTAKKTTAKKTTAAAKKAPAKKVTAKKAPAKKSTARKTTAKKTTARKATS
>NZ_LN997842.1|WP_059252800.1|6813115_6813319_-|hypothetical-protein
MQATAYTYDPETRSGQVLLDDGTPVPFDAAAFDAGGLLLLRPGQRVRIETEGAGDAVRITLVTLQTL
>NZ_LN997842.1|WP_059252801.1|6813377_6814016_-|2-phospho-L-lactate-guanylyltransferase
MQWTLVIPLKPLTRAKSRLADTADEGVRPGLALAFAQDTVGAALACPAVSGVAVVTDDETAGRELAALGARIVPDTPRSGLNAALAHGAAVVRSLRPGTPVAALNADLPALRSPELSRVLAAAAEFPRAFLADAAGRGTTLLAAGADRELQPAFGIDSRARHRASGATELLLTGVDSVRQDVDTGDDLRAALALGVGRHTAAVSAGLLIPGS
>NZ_LN997842.1|WP_059252802.1|6814169_6814940_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MSRRRIGFWYRFAAVICKPPLVVLIKRDWRGMEHIPAEGGFITAVNHNSHLDPFAYAHYQYNTGRVPRFLAKSGLFKKGFVGAAMRGTGQIPVYRESTDALSAFRAAIDAVERGECVAFYPEGTLTRDPNGWPMTGKTGAARVALQTKCPVIPVAQWGANELLPPYAKKPNLFPRKTHRVLAGPPVDLSRFYDKEMTPEVLKEATEVIMAAITRQLEEIRGEKAPETPYDPRRERIEQRRRTQAQTQGRQVEGQSK

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Crispr_ID: NZ_LN997842_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN997842_15

6841574-6841680

Orphan

Consensus_repeat	Method
CGTCGCGGAGGGCTTGGCCGGTACGGCGGGCTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN997842_15

>merge|NZ_LN997842|15|6841574-6841680|CRISPRCasFinder
CGGCGCGGAAGGCTCCGCCGTCGCGGAGGGCTTGGCCGGTACGGCGGGCTTGGTCGTCGTGGAGGGCTTGGCCGGTACGGCGGGCTTGGTCGTCGTGGAGGGCTTGG

>NZ_LN997842|15|14|6841574-6841680|CRISPRCasFinder
CGGCGCGGAAGGCTCCGCCGTCGCGGAGGGCTTGG	CCGGTACGGCGGGCTTGGTCGTCGTGGAGGGCTTGGC
CGGTACGGCGGGCTTGGTCGTCGTGGAGGGCTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN997842.1\|WP_079081159.1\|6835600_6836110_+\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
NZ_LN997842.1\|WP_059252830.1\|6854564_6855221_-\|bifunctional-DNA-primase/polymerase	unknown	unknown	gnl\|CDD\|214927
NZ_LN997842.1\|WP_059252820.1\|6839128_6839989_+\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|234899
NZ_LN997842.1\|WP_059252824.1\|6843751_6847501_+\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
NZ_LN997842.1\|WP_059252828.1\|6851655_6853104_-\|cytosine-permease	unknown	unknown	gnl\|CDD\|251109
NZ_LN997842.1\|WP_059252831.1\|6855677_6857156_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059252823.1\|6842605_6842887_+\|acylphosphatase	unknown	unknown	gnl\|CDD\|237712
NZ_LN997842.1\|WP_059252818.1\|6837380_6838025_+\|DUF177-domain-containing-protein	unknown	unknown	gnl\|CDD\|376863
NZ_LN997842.1\|WP_003951102.1\|6838027_6838201_+\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|237038
NZ_LN997842.1\|WP_059252826.1\|6849288_6850602_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274573
NZ_LN997842.1\|WP_059252814.1\|6832603_6834877_+\|ATP-dependent-DNA-helicase-RecG	unknown	unknown	gnl\|CDD\|236794
NZ_LN997842.1\|WP_059252817.1\|6836167_6837250_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349951
NZ_LN997842.1\|WP_059252815.1\|6835016_6835604_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|367574
NZ_LN997842.1\|WP_059252825.1\|6847713_6849132_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340917
NZ_LN997842.1\|WP_059252829.1\|6853274_6854477_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_LN997842.1\|WP_059252822.1\|6840519_6841104_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NZ_LN997842.1\|WP_059252827.1\|6850629_6851601_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|366009
NZ_LN997842.1\|WP_059252819.1\|6838220_6839027_+\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_LN997842.1\|WP_023546484.1\|6843266_6843470_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059252821.1\|6839961_6840357_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647

Protein	Function_ID	Function_description	E-value
NZ_LN997842.1\|WP_079081159.1\|6835600_6836110_+\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	1.88862e-102
NZ_LN997842.1\|WP_059252830.1\|6854564_6855221_-\|bifunctional-DNA-primase/polymerase	gnl\|CDD\|214927	smart00943, Prim-Pol, Bifunctional DNA primase/polymerase, N-terminal. Members of this family adopt a structure consisting of a core of antiparallel beta sheets. They are found in various bacterial hypothetical proteins, and have been shown to harbour both primase and polymerase activities.	9.87927e-18
NZ_LN997842.1\|WP_059252820.1\|6839128_6839989_+\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	1.92873e-144
NZ_LN997842.1\|WP_059252824.1\|6843751_6847501_+\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NZ_LN997842.1\|WP_059252828.1\|6851655_6853104_-\|cytosine-permease	gnl\|CDD\|251109	pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, thiamine, allantoin.	1.22528e-90
NZ_LN997842.1\|WP_059252823.1\|6842605_6842887_+\|acylphosphatase	gnl\|CDD\|237712	PRK14422, PRK14422, acylphosphatase; Provisional.	1.51391e-52
NZ_LN997842.1\|WP_059252818.1\|6837380_6838025_+\|DUF177-domain-containing-protein	gnl\|CDD\|376863	pfam02620, DUF177, Uncharacterized ACR, COG1399. This family is nearly universally conserved in bacteria and plants except the Chlorophyceae algae. Thus far, mutantional analysis in bacteria have not established a function. In contrast, mutants have embryo lethal phenotypes in maize and Arabidopsis. In maize, the mutant embryos arrest at an early transition stage.It has been suggested that family members specifically affect 23S rRNA accumulation in plastids as well as bacteria.	9.90834e-31
NZ_LN997842.1\|WP_003951102.1\|6838027_6838201_+\|50S-ribosomal-protein-L32	gnl\|CDD\|237038	PRK12286, rpmF, 50S ribosomal protein L32; Reviewed.	1.03885e-25
NZ_LN997842.1\|WP_059252826.1\|6849288_6850602_+\|hypothetical-protein	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	5.13061e-49
NZ_LN997842.1\|WP_059252814.1\|6832603_6834877_+\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_LN997842.1\|WP_059252817.1\|6836167_6837250_+\|hypothetical-protein	gnl\|CDD\|349951	cd06503, ATP-synt_Fo_b, F-type ATP synthase, membrane subunit b. Membrane subunit b is a component of the Fo complex of FoF1-ATP synthase. The F-type ATP synthases (FoF1-ATPase) consist of two structural domains: the F1 (assembly factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha (or A), beta (B), gamma (C), delta (D) and epsilon (E) subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons through the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Candidatus Methanoperedens.	2.77869e-08
NZ_LN997842.1\|WP_059252815.1\|6835016_6835604_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|367574	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95.	2.63065e-69
NZ_LN997842.1\|WP_059252825.1\|6847713_6849132_+\|MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.74421e-154
NZ_LN997842.1\|WP_059252829.1\|6853274_6854477_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	3.91054e-166
NZ_LN997842.1\|WP_059252822.1\|6840519_6841104_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	1.55497e-31
NZ_LN997842.1\|WP_059252827.1\|6850629_6851601_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|366009	pfam00296, Bac_luciferase, Luciferase-like monooxygenase.	3.84456e-34
NZ_LN997842.1\|WP_059252819.1\|6838220_6839027_+\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	7.8046e-119
NZ_LN997842.1\|WP_059252821.1\|6839961_6840357_-\|transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	4.34118e-38

>NZ_LN997842.1|WP_059252822.1|6840519_6841104_+|flavodoxin-family-protein
MTTPVVSVAYHSGYGHTAVLAEAVRAGALDAGAEVHLIKVDEITDEQWETLDRSDAIVFGSPTYMGTASGAFHVFAEATSRRWFGQDWKDKLAAGFTNSASKSGDKLHTLQFFQTLAAQHGMHWVNLGLLPGWNSSTASENDLNRLGFFAGAAAQSNNDQGPEGVHKADVATAEHLGRRVAQTARTFARGRTAA
>NZ_LN997842.1|WP_059252821.1|6839961_6840357_-|transcriptional-regulator
MTVTAQDHDDLAYNVFAKACPSRATLEHVTGRWGGLTLGALYEGSLRFNELRRRVDGVSEKMLSQTLHALERDGLVHREAQPTNPPRVDYELTPLGRQVAERLLALIHCVEGAMDDVLAARARYDETRGAL
>NZ_LN997842.1|WP_059252820.1|6839128_6839989_+|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVEVVRRGLERWVAHRTVAETEVLHPRAVRRHVAGADDFAHRLKGHHIGTARRRGKYLWLPLEEANQSVLAHLGMSGQLLVQPHDAPDEKHLRIRIRFADGLGTELRFVDQRTFGGLSVHDNTPDGLPDVIAHIARDPLDPLFDDEAFHLALRRKRTTIKRALLDQSLISGVGNIYADEALWRARIHYERPTARFTRPVTAELLGHVRDVMNAALAVGGTSFDSLYVNVNGESGYFDRSLDAYGREGLPCKRCGTPMRRRPWMNRSSYFCPKCQRAPRVSS
>NZ_LN997842.1|WP_059252819.1|6838220_6839027_+|ribonuclease-III
MSTPKKNSADNQASSHTLLEGRLGYQVESALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAIEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRSIRAAADERAKVAKEPVRETADEAVRGGDTSSATA
>NZ_LN997842.1|WP_003951102.1|6838027_6838201_+|50S-ribosomal-protein-L32
MAVPKRKMSRSNTRHRRSQWKAAVPTLVACERCHEPKQQHIACPSCGTYNKRQVLEV
>NZ_LN997842.1|WP_059252818.1|6837380_6838025_+|DUF177-domain-containing-protein
MASNARLDHRNPLVFDTHELGRRPGALQRLTRTIDAPRDLGIQGVIGVPEGAPVELELRLESVMEGVLVTGTARATAEGECVRCLEPVELELEADFQELFSYPDADDRGRVIAEPGDDAEDDEDRFFLEDGLFDLEPLLRDAVVLALPMQPVCQEDCPGLCSECGARLADDPDHHHDAVDIRWAALQGLAGSMTDGEKDEMSGAEAGVDEKQEK
>NZ_LN997842.1|WP_059252817.1|6836167_6837250_+|hypothetical-protein
MDVQKKLDEIVSAVSSARAMPMSASCVINRAELLAMLEEVRQALPGSLAQAQELIGDREQMVEQARLEAERIIENAHAERGSLISDTEIARRSRAEADRILAEARKEAEEIRAEADDYVDSKLANFEVVLTKTLGSVGRGREKLLGTGPGLDENGYEDEDAPERSQDPETLRHNADAYVDAKLGAFEAVLAKTLEAVGRGRQKLHGRIATDDLGALADDTTTFQHSSDADYLADLAALADSDRADRRQPERPEPPQPSYAPQPAYGYPQQQDPYAGFPQQPQYAPQQDPYGYQQADPYAYQGYDAPQQGYDAQQPHEPQQPPQQPQPQGRQDYALDETSLFDTSMISAEQLRAYEQGRGL
>NZ_LN997842.1|WP_079081159.1|6835600_6836110_+|pantetheine-phosphate-adenylyltransferase
MTGPESEGSQVRRAVCPGSFDPITNGHLDIIARASRLYDEVYVAVMINKSKKGLFDIEERIELIREVTSEYANVRVESFHGLLVDYCKQRDIPAIVKGLRAVSDFDYELQMAQMNNGLTGVETLFVPTNPTYSFLSSSLVKEVAAWGGDVSHLVPAQVLQALNQRLAKG
>NZ_LN997842.1|WP_059252815.1|6835016_6835604_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MTRVIAGAAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGPLDGERVLDLYAGSGAVGLEALSRGAGHTLLVEADARAARVVRENVRNLGLPGAEVRAGKAEQIIRTAPPAEPYDLVFLDPPYAVTDDDLREILLTLHSEGWLAEQALVTVERSTRGGEFHWPDGFEAIRSRRYGEGTFWYGRAASTCEDAR
>NZ_LN997842.1|WP_059252814.1|6832603_6834877_+|ATP-dependent-DNA-helicase-RecG
MDLVPALEEPLKQPLKSVLGPATAKVMAEHLGLRTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFASAKAPRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHKELLPGTRAMFAGKVSVFNRRLQLAHPAYELLRGDSEEAVETWAGALIPIYPATAKLESWKIGKAVQTVLPTAQEALDPLPPALREGRGLLPLPEALLKIHRPHTKADIADARARLKWDEAFVLQVALARRRHADTLLPAVPRVPGPDGILAAFDDRLPFTLTEGQQKVSREIFADLATAHPMHRLLQGEVGSGKTMVALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSVTEMMGELASWGLWREAPPQKGGGGRREGGMLGGAEHATKVVLLTGSMGMAARRQALLDLATGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADKPHFLARAWERVREEVAAGHQAYVVCPRIGDEEDDPKKAGKKKDPEGEADKRPPLAVLEVADQLSRGPLQGLKVEVLHGRMHPDDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPEASPARQRLAAVASTLDGFELSRIDLEQRREGDVLGQAQSGARSSLRVLAVIEDEEVIAEARQEAAAVVAADPELERLPGLRTALDALLDEEREQYLEKG
>NZ_LN997842.1|WP_059252823.1|6842605_6842887_+|acylphosphatase
MSEDVRLVAWVRGHVQGVGFRWFTRAKALEIGGLSGFALNLADGRVQVVAEGPREGCEGLLDWLQGSDTPGRVDGVTEIWDTPRGGYDGFAIR
>NZ_LN997842.1|WP_023546484.1|6843266_6843470_+|hypothetical-protein
MAKALLGYVGGSDPRLLAEMRRLQQRVQDLESELVRIQAENDALTAAASQDRIMESIDAHQAEPALT
>NZ_LN997842.1|WP_059252824.1|6843751_6847501_+|chromosome-segregation-protein-SMC
MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGKMEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRTMFRNGGSEYQINGDTCRLLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHRKRKEKALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLVRLREALRAEIADEAALKERKETAEQELKKALHREALLEDKVRRLTPRLQRAQQTWYELSQLAERVRGTVSLADARVKSATSAPPEERRGRDPEELEREAARIREQEAELEAALEAAQRALDDTVAHRAELERELAVEERRLKDLARAIADRREGLARLSGQVNAARSRAASAQAEIDRLATARDEAQERAVRAQEEYEALQAEVDGLDAGDADLAERHEAAKRQLAEAESALTAAREAATAAERRRAATQARHEALALGLRRKDGTGILLGARDRLTGILGPAAELLTIRPGYEIPLAAAFGAAADAIAVTTPAAAAEAIKLLRKQDGGRAALLLADAPDTERPSRHAGDAAPDHDGAEPRRGAGNGAPGHDAPAPGHDGVAPRGGAGNGAPGHDAPADDRRPGITAPAARLPGTALHAADLVRGPAALLPAVRRLLAGIVVVETLDDAEALVYARPELTAVTAEGDLLGAHFAHGGSAGAPSLLEVQASVDEAAAELADLEVRCAELAEAQHAAAEQRRQAAALVEELGERRRAADREKSAVAQQLGRLAGQARGAAGEAERSAAAAARAQEALEKAVQEAEELAERLAVAEEMPVEEEPDTSVRDRLAADGANARQTEMEARLQVRTHEERVKGLAGRADSLDRAARAEREARARAEQRRARLRHEAAVAEAVASGARQLLAHVEVSLARAEQERSAAEAAKARGEQELAAARTAGRELKAELDKLTDSVHRGEVLGAEKRLRIEQLETRALEELGVEPEGLVAEYGPHQPVPPSPPADGEQLPEDPAHPRNQPRPFVRAEQEKRLKAAERAYQQLGKVNPLALEEFAALEERHKFLSEQLEDLKKTRADLLQVVKEVDERVEQVFTEAYRDTAREFEGVFGRLFPGGEGRLVLTDPDNMLTTGVDVEARPPGKKVKRLSLLSGGERSLTAVALLVSIFKARPSPFYVMDEVEAALDDTNLQRLIRIMQELQETSQLIVITHQKRTMEVADALYGVSMQGDGVSKVISQRLR
>NZ_LN997842.1|WP_059252825.1|6847713_6849132_+|MFS-transporter
MTSTAQAPQSGARTAQPDHLGHVIFIAAAAAMGGFLFGYDSSVINGAVEAIRDRYDIGSAALAQVIAVALIGCAIGAATAGRIADRIGRIRCMQIAAVLFTISAVGSALPFALWDLAFWRVVGGFAIGMASVIGPAYIAEVAPPAYRGRLGSFQQAAIVVGIAVSQLVNWGLLNAAGGDQRGKLMGLEAWQVMLGVMVVPAVLYGLLSFAIPESPRFLLSVGKRDRAREILAEVEGKDIDLDARVAEIEQAMNSEHKSSFKDLLGGSFFFKPIVWIGIGLSVFQQFVGINVAFYYSSTLWQSVGVDPTDSFFYSFTTSIINIVGTVIAMIFVDRVGRRPLALIGSIGMAVGLALEAWAFSYDLVGGKLPSTQGWVALIAAHLFVLFFALSWGVVVWVMLGEMFPNRIRAAALGVAAAAQWIANWAITASFPSLADWNLSGTYVIYTVFAALSIPFVLKFVKETKGKSLEEMG
>NZ_LN997842.1|WP_059252826.1|6849288_6850602_+|hypothetical-protein
MHSVIKKTLLVPGLVLALAASSAACGGNEDGGGAATGPDGTAASRSPSSRGLGNIVVGGKAVTGSEPSGVDKVPYRRTSTDGALYAPVTGYRSMMYGRHGLEAVYDDVLTAGVKSGGASGNVVTTIDPKAQKAAFDALGDRRGAAVALDARTGRLLALVSTPSYDPATFSGATPDDATAWKALTADERDPLLNRALRLAPGPGATFHVVVAAAALEHGLYASVDDSTRTPLNYVVPGTDAAVAGDSPRCENASIRTALRYSCDNVFARLAVDAGQSALRSTAEKLGYNQELTIPLRATESTYPTKPLTAAQLARTGTGGGGVVATPLETARITAALADGGRLVTPRLVERVEKADGSTQRQADSGGSGRAVSRRTAEQLRSALPAVASRDGDRRGSWFTTYARQGDGRLVSVAVHVSGGDGGQEAGRIAGKILAALA
>NZ_LN997842.1|WP_059252827.1|6850629_6851601_-|LLM-class-flavin-dependent-oxidoreductase
MPVTVVRFNLVAPGASPAALSARYRAALEMAAYADGHGITTVQTEEHHGAENNWLPSPFAFAGAVFGATRRIAVTVSAVIGPLHDPLRLAEDIAVLDLLSGGRLVTVAGIGYRPEEYDLFGVDWRRRGRIQDELLETLLKAWSGEEFVHRGRRVRLTPRPYTDPHPLLLVGGSSRAAARRAARLGLPFFPSAHLPELEAYYKEKLTEYGTEGWTMMPAAETPLLHLAEDPDRAWAEYGGHFLHEARTYASWQSDGIRSAVRSAATSVAELRAEGVYRVLTPEQCVAQGLDSLVLHPLVGGMPVEEGWRSLRLFAERVVPALGG
>NZ_LN997842.1|WP_059252828.1|6851655_6853104_-|cytosine-permease
MSKTVETEGALETRGIEQVPDHERTAKARELFPTWVGANISVLLLTMGASLVVAYHLNIWQALVVAVAAPVVSYGLVGLIGIAGKRGGAPGMALSRAVFGQRGNLLPGSLIWIARWGWETINAVTGAYAMLTILDILFGIKANSVLDMVTLLAFVVATFAISGLGITAVQKCNTYATYLFGVFSVLVLGYLVANTDWSKVMDHSAGSTAAVITGIGMIAAGGVSWIPSAPDFTRYLPRTASSKAIVGTAVGGAGVVVLPMVLMGAVMAVSTPDLASASDPVSFLGEILPTWIAVPYLFIALIGMLLINSMSMYSAGFTAQTLGITVPRHWAVSVNAVISLLFGGVLMLVATSFMGSFIAFLSLLAVAFSAWVGVFGADMLSRTEYDGRAMADTTRTSAYWYKGGFSPAAVAAWAVGLVSGLMFTTSDWFTGPLATNNVIGEYGLGWVATIVISGVLYLVLPKPAAGRPVTGVPAEESETLAV
>NZ_LN997842.1|WP_059252829.1|6853274_6854477_+|signal-recognition-particle-docking-protein-FtsY
METIILAVVIAVVVLGALGGLIVGSRRRKPLPPPPPKTPDITAPPAEPHVGDEAETPRDEPRRTIEEVDLPGGPAPVVVEEPPVVEAPEIEIPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQELVERLRERVRVLGTRTPEELRGLLREELLKLIGTDVDRTVKTEPEDRKPGIVMVVGVNGTGKTTTTGKLARVLVADGRTVVLGAADTFRAAAADQLQTWGERVGAYTVRGPEAGDPASVAFDAVKEGKEMGVDVVLIDTAGRLHTKTGLMDELGKVKRVVEKHAPLDEVLLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGADDLAPFEPEAFVDALIGD
>NZ_LN997842.1|WP_059252830.1|6854564_6855221_-|bifunctional-DNA-primase/polymerase
MGFTIGGIREIRSGTRRRGRAAECTAVAEFTGLWGWDVVPGARAAGDVCSCGRADCAAPGAHPLEFAPPVPAGATLDEVNKAWSEFPGASVMLPVGQAFDAIEVSEPAGRRALVRLERMGLPVGPVTATPDGRAHFFVAPGAAADLPRLLYRMGWDDPAALDLRGLGPGTYLTAPPSDRGGLGPARWLRPPALDSATRPPAARLLLGTLAYVAHRSRA
>NZ_LN997842.1|WP_059252831.1|6855677_6857156_+|hypothetical-protein
MGGNGGSGTHADKRPNELLGSWFVRSGWSKGELARQVNHRARQLGANHISTDTSRVRRWLDGENPREPIPRILSELFSERFGCVVSIEDLGLRTARQSPAASGVDLPWTGPQTVALLGEFSRSDLMLARRGFLGTSLALSAGPSLIEPMQRWLVPAPASPVPPEPQPALDPRRPGRLSRPELDLLESTTRMFRQWDAQCGGGLRRKAVVGQLHEVTDLLQEPQTEATTRKLFQVAAELAELAGWMSYDVGLQPTAQKYFVLALHAAKEAGDKPLGSYILSSMSRQMIHLGRPEDALELIHLAQYGSRDCASPRTQSMLYAMEARAYANMGQPGKTKRAVRMAEDTFAEADEWDEPDPDWIRFFSEAELYGENSHSYRDLAYVAGRSPTYASLAEPLMRRAVELFAKDSEHQRSYALNLIGMSTVHLLQREPEQSTTYATKAMEIAKKVRSERVNTRIRKTVDTAVRDYGDLAAVVDLSDQLAVDLPEAAEAV

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Crispr_ID: NZ_LN997842_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN997842_16

7311188-7311288

Orphan

Consensus_repeat	Method
AGGGGCGCGGGGAACGGCGCGAGCAACCACGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN997842_16

>merge|NZ_LN997842|16|7311188-7311288|CRISPRCasFinder
AGGGGCGCGGGGAACGGCGCGAGCAACCACGACGGACCCGCACCGGCCCACGGTCCGCAGCGCCCCGCCAGGGGCGCGGGGAACGGCGCGAGCGACCACGA

>NZ_LN997842|16|15|7311188-7311288|CRISPRCasFinder
AGGGGCGCGGGGAACGGCGCGAGCAACCACGA	CGGACCCGCACCGGCCCACGGTCCGCAGCGCCCCGCC
AGGGGCGCGGGGAACGGCGCGAGCGACCACGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN997842.1\|WP_059253149.1\|7311887_7313081_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226984
NZ_LN997842.1\|WP_059253147.1\|7310773_7311163_+\|cell-division-protein-SepF	unknown	unknown	gnl\|CDD\|377370
NZ_LN997842.1\|WP_059253129.1\|7297753_7299073_-\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
NZ_LN997842.1\|WP_059253136.1\|7304631_7305255_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227169
NZ_LN997842.1\|WP_059255294.1\|7313679_7314096_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059253127.1\|7296697_7297654_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_LN997842.1\|WP_059253131.1\|7299342_7301799_+\|glycoside-hydrolase-family-2-protein	unknown	unknown	gnl\|CDD\|225789
NZ_LN997842.1\|WP_059255295.1\|7317912_7318854_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059253139.1\|7305335_7306340_-\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	unknown	unknown	gnl\|CDD\|236515
NZ_LN997842.1\|WP_059253160.1\|7316794_7317751_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_LN997842.1\|WP_059253155.1\|7314717_7315641_+\|LLM-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274648
NZ_LN997842.1\|WP_059253135.1\|7302894_7304247_-\|mannan-endo-1,4-beta-mannosidase	unknown	unknown	gnl\|CDD\|365907
NZ_LN997842.1\|WP_059253141.1\|7306345_7308520_-\|methylmalonyl-CoA-mutase	unknown	unknown	gnl\|CDD\|236508
NZ_LN997842.1\|WP_059253153.1\|7314316_7314541_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059253158.1\|7316258_7316687_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059253157.1\|7315771_7316299_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059253143.1\|7308519_7310325_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239649
NZ_LN997842.1\|WP_059253162.1\|7318981_7320445_+\|3'-terminal-RNA-ribose-2'-O-methyltransferase-Hen1	unknown	unknown	gnl\|CDD\|274962
NZ_LN997842.1\|WP_059253133.1\|7301795_7302836_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_LN997842.1\|WP_059253151.1\|7313077_7313443_+\|nucleotide-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|212144

Protein	Function_ID	Function_description	E-value
NZ_LN997842.1\|WP_059253149.1\|7311887_7313081_+\|hypothetical-protein	gnl\|CDD\|226984	COG4637, COG4637, Predicted ATPase [General function prediction only].	0.00467982
NZ_LN997842.1\|WP_059253147.1\|7310773_7311163_+\|cell-division-protein-SepF	gnl\|CDD\|377370	pfam04472, SepF, Cell division protein SepF. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This family also includes archaeal related proteins of unknown function.	2.35143e-22
NZ_LN997842.1\|WP_059253129.1\|7297753_7299073_-\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	5.69315e-25
NZ_LN997842.1\|WP_059253136.1\|7304631_7305255_-\|hypothetical-protein	gnl\|CDD\|227169	COG4832, COG4832, Uncharacterized conserved protein [Function unknown].	6.80481e-59
NZ_LN997842.1\|WP_059253127.1\|7296697_7297654_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	8.16551e-77
NZ_LN997842.1\|WP_059253131.1\|7299342_7301799_+\|glycoside-hydrolase-family-2-protein	gnl\|CDD\|225789	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].	4.12809e-76
NZ_LN997842.1\|WP_059253139.1\|7305335_7306340_-\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	gnl\|CDD\|236515	PRK09435, PRK09435, methylmalonyl Co-A mutase-associated GTPase MeaB.	0
NZ_LN997842.1\|WP_059253155.1\|7314717_7315641_+\|LLM-class-F420-dependent-oxidoreductase	gnl\|CDD\|274648	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis. [Unknown function, Enzymes of unknown specificity].	1.15864e-113
NZ_LN997842.1\|WP_059253135.1\|7302894_7304247_-\|mannan-endo-1,4-beta-mannosidase	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	8.45546e-33
NZ_LN997842.1\|WP_059253141.1\|7306345_7308520_-\|methylmalonyl-CoA-mutase	gnl\|CDD\|236508	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed.	0
NZ_LN997842.1\|WP_059253160.1\|7316794_7317751_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	2.08515e-56
NZ_LN997842.1\|WP_059253143.1\|7308519_7310325_-\|hypothetical-protein	gnl\|CDD\|239649	cd03677, MM_CoA_mutase_beta, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, Beta subunit-like subfamily; contains bacterial proteins similar to the beta subunit of MCMs from Propionbacterium shermanni and Streptomyces cinnamonensis, which are alpha/beta heterodimers. For P. shermanni MCM, it is known that only the alpha subunit binds coenzyme B12 and substrates. The role of the beta subunit is unclear. MCM catalyzes the isomerization of methylmalonyl-CoA to succinyl-CoA. The reaction proceeds via radical intermediates beginning with a substrate-induced homolytic cleavage of the Co-C bond of coenzyme B12 to produce cob(II)alamin and the deoxyadenosyl radical. MCM plays an important role in the conversion of propionyl-CoA to succinyl-CoA during the degradation of propionate for the Krebs cycle. Methylobacterium extorquens MCM participates in the glyoxylate regeneration pathway. In M. extorquens, MCM forms a complex with MeaB; MeaB may protect MCM from irreversible inactivation. In some bacteria, MCM is involved in the reverse metabolic reaction, the rearrangement of succinyl-CoA to methylmalonyl-CoA. Examples include P. shermanni MCM during propionic acid fermentation and Streptomyces MCM in polyketide biosynthesis.	0
NZ_LN997842.1\|WP_059253162.1\|7318981_7320445_+\|3'-terminal-RNA-ribose-2'-O-methyltransferase-Hen1	gnl\|CDD\|274962	TIGR04074, Methyltransferase_type_12, 3' terminal RNA ribose 2'-O-methyltransferase Hen1. Members of this protein family are bacterial Hen1, a 3' terminal RNA ribose 2'-O-methyltransferase that acts in bacterial RNA repair. All members of the seed alignment belong to a cassette with the RNA repair enzyme polynucleotide kinase-phosphatase (Pnkp). Chemically similar Hen1 in eukaryotes acts instead on small regulatory RNAs. [Transcription, RNA processing, Protein synthesis, tRNA and rRNA base modification].	0
NZ_LN997842.1\|WP_059253133.1\|7301795_7302836_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.91641e-71
NZ_LN997842.1\|WP_059253151.1\|7313077_7313443_+\|nucleotide-pyrophosphohydrolase	gnl\|CDD\|212144	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in mouse RS21-C6 protein and its homologs. RS21-C6 proteins, highly expressed in all vertebrate genomes and green plants, act as house-cleaning enzymes, removing 5-methyl dCTP (m5dCTP) in order to prevent gene silencing. They show significant sequence similarity to the dimeric 2-deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTP pyrophosphatase or dUTPase) and NTP-PPase MazG proteins. However, unlike typical tandem-domain MazG proteins, RS21-C6 contains a single MazG-like domain and functions as a tetramer (a dimer of dimers) with a typical four-helical bundle. Divalent ions, such as Mg2+, are required for its pyrophosphatase activity. This family also includes a pyrophosphatase from Archaeoglobus fulgidus (Af1178). Although its biological role remains unclear, Af1178 shows significant sequence similarity to the mouse RS21-C6 protein.	4.29743e-41

>NZ_LN997842.1|WP_059253147.1|7310773_7311163_+|cell-division-protein-SepF
MSRYDVTDEQWEGLAQVVPLRGRDAWPSAVNHRSLPDAETETRRRFVVLRVNVFADAREVAETLMAGVPVLLDLSGAEGDVAKRVLDFSTGVVFGLGSGMHRVDRNVFLLTPPGTEVSGLMEGAGLSGG
>NZ_LN997842.1|WP_059253143.1|7308519_7310325_-|hypothetical-protein
MTVLPDDGLSLAAEFPDATHEQWQRLVEGVLRKSGKEFSGAAAEDALSTTLEDGLRTRPLYTARDSAPDPGLPGFAPFVRGSRPEGTSPSGWDVRQRHTALTDGAVLADLENGGTSLWLVLGEGGIPVAELDRALDGVYLDLAPVVLDAGRDTEQAAEALLRRYAEQGVAAEAVRGNLGGDPLGYEARTGTPLGFAPYAALAERCAEGYPGLRALTVDALPYHEAGGSAAQELGASLATGVAYLRELTEAGLGVEQAAAQLEFRYAATADQFLTIAKLRAARRLWARVAEVCGAPGAGAQVQHVVTSPVMMTRRDPWVNMLRTTVATLAAGVGGADSVTVLPFDHALGLPDAFARRIARNTSTILIEESHLARVIDPAGGSWYVERLTAELAEAAWQFFRSIERDGGQPAVLRSGRLRTDLATTWAERSKRLAKRREPITGVSEFPLLAEKPVERAPAPEPPSGGLPRVRRDEAYEELRARSDAHLAATGARPRIYLATLGSPAEYTARATFAANLFQAGGIEPVTEGSFEDSGATEAVLCSSDALYAEQAERTAAALRAAGARHVFLAGRGEHSGIDSYVFAGCDAVDVLSATLDRMGVS
>NZ_LN997842.1|WP_059253141.1|7306345_7308520_-|methylmalonyl-CoA-mutase
MGIPDFSGIELGTPVADATDAEWRAALKQATGGTEPLWETPEGIGVKPLYTGRDLEGLDFLGTYPGIAPYLRGPYPTMYVNQPWTIRQYAGFSTAEESNAFYRRNLAAGQKGLSVAFDLPTHRGYDSDHPRVTGDVGMAGVAIDSIYDMRQLFDGIPLDRMTVSMTMNGAVLPVLALYIVAAEEQGVPPEKLAGTIQNDILKEFMVRNTYIYPPKPSMRIISDIFAYTSQRMPRYNSISISGYHIQEAGATADLELAYTLADGVEYIRAGREAGLDVDAFAPRLSFFWAIGMNFFMEVAKLRAARLLWAKLVAQFDPKNTKSLSLRTHSQTSGWSLTAQDVFNNVTRTCVEAMAATQGHTQSLHTNALDEALALPTDFSARIARNTQLLIQQESGTTRVIDPWGGSAYVERLTYDLARKAWAHIQEVEQAGGMAQAIDAGIPKLRVEEAAARTQARIDSGRQPVIGVNKYRVDSDEAIEVLKVDNSAVRAQQIEKLRRLRAERDETACRDALDALTRAADGDGNLLELAVRAARAKATVGEISDALEKVYGRHASQIRTISGVYRNEAGQSPSVDRTRALVDAFEEAEGRRPRILVAKMGQDGHDRGQKVIATAFADLGFDVDVGPLFQTPEEVARQAVEADVHVVGVSSLAAGHLTLVPALREKLAEEGREDIMIVVGGVIPPQDVPTLLEMGATAVFPPGTVIPDAARDLVKQLSADLGHEL
>NZ_LN997842.1|WP_059253139.1|7305335_7306340_-|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB
MAAIDLDTYVKGVLDGKRALVARAITLVESTRPQHRSLAQQLLTELLPHSGRARRIGISGVPGVGKSTFIDAFGTMLTSLGHRVAVLAVDPSSTRTGGSILGDKTRMERLAVDPAAFVRPSPSAGTLGGVAKATRESMVVMEAAGYDVILVETVGVGQSETTVAEMVDSFLLLTLARTGDQLQGIKKGVLELADVIAVNKADGPHERDARAAARELAGALRLMHGKDAFWTPPVLHCSARESTGLDTVWERLEQHRTLLDTTGRLAAKRRDQQVGWTWAMVRDELLGRLHADPAVRATAPDLERQVREGRLTATLAAERILAAFEGRTTSSADG
>NZ_LN997842.1|WP_059253136.1|7304631_7305255_-|hypothetical-protein
MQSYDIKRERRDLYSAARGRFEIVDVPRMGFLMADGRGNPNASADYRAVVEALYTTAYAVRAIAKDRLDRAHTVGPLEGLWSADDLSVFQTRARDEWVWTLMIVQPGWVTAAMADEAMDRVQRTKDLAAGHRVRFDHYTEGRCVQTLHVGPYDEEAPTIARLHDEFLPAEKLVPRGHHHEIYLSDARRTAPARLRTILRQPVGPAHG
>NZ_LN997842.1|WP_059253135.1|7302894_7304247_-|mannan-endo-1,4-beta-mannosidase
MRKRLATAAGALLALAAAVLAAPSPAQAGTAAGTQAAPGFHVDAGRLVDAGGRDFVLRGVNHAHAWYPTRTAQALKDIKALGANSVRVVLATGDRWAKNDTADVAAVVSQCKQNRLVCVLEAHDTTGYGEQDGAVPLSRAVDYWISVEDAVKGQEKYVILNIGNEPYGNGSSGATPWTADTKNAIGRMRAAGFEHTLMVDAPNWGQDWSFTMRDHAAEVFAADPAKNTVFSVHMYGVFNTAAKVKDYLNRFTSQRLPLVVGEFGHLHSDGDPDEDAVMSAARQLGVGYLGWSWSGNGGGVEYLDMATGFDAARLSAWGRRIFSGADGIQQTAKEAGVFSDGGPAAGNCEVGYRLSDWGNWFNADVTIRNTGPTAVKGWQLTFSFPGGQQLHQTWNAKAVQQGSEVRAVNESWTETIPAGGTVSFGFNGSSTGTNGVPAAFALNGGTCAKS
>NZ_LN997842.1|WP_059253133.1|7301795_7302836_+|LacI-family-transcriptional-regulator
MSGSAERVTIKDVAARAGVSKGAVSLAFNHKPGVSEATRERIFAAARELGWAPSATARSLSSQRVDIVGLALRRPARLLGLEPFYMDFISGIESVLVERSCSLLLRLVRDLDEEITLYKEWWRGRMIAGAILVDFHEDDPRVPSLRGLGMPAVAVAHPSLTGPFPAVWTDDASAVAEAVRYLAALGHRSIARVGGPAELGHSAIRARAFAATTRELGLGEARQIATGFDEKEGARATRTLLLAAERPTAIVYDNDIMAVAGAGVAAEMGFTVPYDLSLLAWDDSQLCRITHPTMSAMSHDVHHFGAEVARVLFDVIGGARTAGLQVPTPSLTPRGSTAPAPGTHSP
>NZ_LN997842.1|WP_059253131.1|7299342_7301799_+|glycoside-hydrolase-family-2-protein
MKDVTQLTEGWSLRHGEESLEATVPGCVHTDLLTAGVIPDPFLGRNETDVAWVGRRAWTYVRDLGHDSAHERTDLVFDGLDTAAYITLGGRPVGRTRNMHRRYRFDVTGRTGRLEIRFASAYDEAAAVRAVTGERPNVYPEPSQYIRKMACNFGWDWGPTLVTAGIWRPVRLEHWSTARIAHVRPLVTVAEGTGRVEVRLAIERTAQGRGRTLRAEARVAGARAEAELDGDEAVLRLEVPDARLWWPRGYGEQPLYDLRLTLSDEEGGPLDTWHRRIGFRTVELDRSADEHGTGFTLVVNGVRIFARGVNWIPDDAFPSRVTPERYRTRLTRAAEANVDLVRVWGGGIYEDDAFYDACDELGLMVWQDFLFACAAYPEEQPLRGEIEAEARDNVVRLMPHPSLVLWNGNNENLWGFRDWEWEAPLAGDSWGEGYYLGLLPRIVAELDPTRPYTAGSPWSGSWDHHPNDPAHGTHHSWEVWNRQDYAEYRASVPRFVAEFGWQAPPALATLRRALPGERLAPDSPGMLHHQKAEDGNGKLDRGVARHFPLPEDDFDRWHYLTQLVQARAVAAGIEHWRSHWPVCAGTVVWQLNDCWPVTSWAAIDGDGRLKPLYHELRRVYADRLLTLQPGAGGLVLAAVNQSAEPWRTTVTLRRTGADGTTVGEAALDVTADPRAVARIAVPEGLVPDERSAKEFLVADAWEPARPAGAGSGGGAGSGGGLRALHFPVPDKDFAYPCPRFDVTLEPVPGPGDRVDIVVSARTLVRDLLLQPDRLGPAAACDSGPQTLLPGERTRIRVHGCGTLTADAARAALFCVEPA
>NZ_LN997842.1|WP_059253129.1|7297753_7299073_-|carbohydrate-ABC-transporter-substrate-binding-protein
MGKKKALTGALLAAAIMTVAGCSGRSTASGETAKAPADPADASGTIKVLTHRTDLVQNGTMAEYAAEFNKTYPDVKVTFEALTDYEGEVKIRMNTDDYGDVLMIPAAVAKNDYPKFFAPLGNAGELGGRYRFSDKAEVGGKVYGISTFGTANGFLYNKAVWKKAGITKWPATPEEFVGDLKAIRSRTDAVPYYTNFKDGWPLTAWSNNIGSVTCDAKANDKLAGPVSPWKRGGELHTIDSLLHDIVKEGLSEKDPNTTNWEASKDMIAKGEVATMQLGSWAITQMRDAARKNGADPEDIGFMPFPAQKDGTYCAVLASDYQQAVNIHSGHKTAARAWIDWFAEKSGFSVKEGAVPALKSAPLPSTLKDFVDNDVTFVERSEAKTGQVNAIDNAAEIGLNKPDYRQKLVDTARGAQRGSLDDFFADLDKRWNEAAGTAGS
>NZ_LN997842.1|WP_059253127.1|7296697_7297654_-|sugar-ABC-transporter-permease
MTETTHTAPAKVPRATAPPPATGRRSSPPRGGPLRRLTPWLFLAVPLALLVTLTYVPVGNMIYYSLTDWDGVSPDRNFTGLDNYEQIFTRPELFRVFFVSLYYLAASAVQIAIALYFATVLSFDLRFRNLFKGILFFPYLINGVAIGFVFLYFFQDGGTLDSVLSWFGAGSDHAWLGDPTSANVSLAGVSVWRFTGLNFVLFLGAIQSVPAELYEAAQLDGATRWQQFRHIIAPSIRPVVSLSVILAISGSLAVFEIPYIMTAGATGTTTFVIQTVKLAFQFNKTGLASAAAVVLLLIILLITWIQRRLVPDEKVDLV
>NZ_LN997842.1|WP_059253149.1|7311887_7313081_+|hypothetical-protein
MAVPSVSAEPPAAHASATVPAQSRAPLDIRARITELRLSAFAGHRRAGFPLGPVTVFAGPSGSGKTTALAAFEALARLGGGAPLVEAFPDPVACVPERARPDAERRRGFRIGCTADGAEGPVRLDLAVQAEPDLRIVGERLTARGVVLLETALRDPGRRTVQAAWHTAGTAPVTRAPLPDDRLGTALLPLRVAGKTDGQRRVLAAAEQMVVALRSVFPCDPRPEYMRVPVPTGSGRLLPGCDNLADVLWRTRAECGRRHGQLVEALRGGCAGRVADLVAEPLADGTVRALLDRGDGFRTELARLGDGELRYVALTLVLLTGPGVLEVDAPGEVPDALRTLTVLADGFDRGLDPRQRRELLRTAARMGERGHIRCVAAVQDASWAAGAPGVTVVHLNP
>NZ_LN997842.1|WP_059253151.1|7313077_7313443_+|nucleotide-pyrophosphohydrolase
MTEHPDLARLQRRLAEFAAARNWQPYHTPKNLVAALSVEASELVEIFQWLTPEESARVMDDPGTAHRVTDEVADVLAYLLQLCEVLGVDPLAALAAKIERNERRFPVPGAEERAGEQQADS
>NZ_LN997842.1|WP_059255294.1|7313679_7314096_+|hypothetical-protein
MAEVWQAQALAQAIGSRLAVSGPPELRGEALGLTELAGRGCGVLDPPELDPGDLRAAQLTELDDARETLLCLGGLLGEVGIALVGMASAAADETTYWQCMEAIDAADESRDRVLEMLRKLAAREEVLPEDAQDSPSGV
>NZ_LN997842.1|WP_059253153.1|7314316_7314541_-|hypothetical-protein
MAAVARHRAGPAGPGAEEAVMSEESVPPQGGAAGRPKGLLEQMEELMAALNADLSALADLQASAPARGTADEAD
>NZ_LN997842.1|WP_059253155.1|7314717_7315641_+|LLM-class-F420-dependent-oxidoreductase
MDLRIFTEPQQGATYDTLLTVAKATEDLGFDAFFRSDHYLRMGNVDGLPGPTDAWITLAGLARETKRIRLGTLMTAGTFRLPGVLAIQVAQVDQMSGGRVELGLGAGWFEEEHKAYGIPFPKEKFARLEEQLAIVTGLWATEVGKTFDFHGAYYDLTDSPALPKPAQKKVPVLIGGHGATRTPRLAARYADEFNIPFASIEDSARQFGRVREAAVAAGRAADELTYSNALVVCVGRDDQEVARRAAAIGRQVDELKANGLAGSPAEVVDKIGRYAEIGSQRIYLQLLDLDDLDHLELISSQVQAQLS
>NZ_LN997842.1|WP_059253157.1|7315771_7316299_+|hypothetical-protein
MDDDSPLGLLFGLLLFPALLAVPAWLIALIVKLGSVAMPGRRPDWRLDLMRWSAWMAGWAALVLYLLGAGAVAISVHESSSGADSTPAHECRDDFPPGVLVGQSGSFLPLRFDCVLADGSTRPSSPGYFWINLLVLALGLAAVALGVLARTWADRRPEPRVPVTDPGSGDGPRPV
>NZ_LN997842.1|WP_059253158.1|7316258_7316687_-|hypothetical-protein
MRRTARTGSGGRAGVLAAVAPLAASCGTGRRCPPVPAPAAARDAGRRTGKAASPGPLPALGRTARRGGPRGHGHPGVLVRLGEDAYDVGLTGARAPGDRGTGPQRPADAFPTWWDGAGGDTGAAWNLLVLTRGGGRLLTRGP
>NZ_LN997842.1|WP_059253160.1|7316794_7317751_-|D-alanyl-D-alanine-carboxypeptidase
MTDDQGFRVRRRAAVAVAAGAVLGAGILATAPAQAATATPAASAPRSAAAAPGVSAQGAYAMNAATGKQLFGKAVDGRLRTGSTTKIMTALVVLSQRNVDLDKKVRIKKAYTDYVIDPTTHVQRYSSANLILGDSMKVRDLLYGLLLPSGCDAAYALADTYGSGSTTAQRTKSFIGKMNSKARELGLRNTHFDSFDGVSNGKNYSSPRDLTKLAGAALKNKTFKKVVGTKVYDDMQSYRPGGGTHAMQPWKNSNKLLGSYRGAFGVKTGSGPEAKFCLVFAATRGSRTVVGTVLADTSADQRFKDAAKILDHGFAQRG
>NZ_LN997842.1|WP_059255295.1|7317912_7318854_+|hypothetical-protein
MRKLLPLALTGLLAVSACQFVGDDDSDDEARRLNTMKSFPLNAYIPDATSPDGKAVGTAQWILAKQCMVRLGFTGFKTLDIRTVDGTYPVRQGTLASSSKVGDDSPYGVDDPDLAAEHGYHNRQRDEPGTQPMEWPADQYAALTGTFESGDSRRAHGHPIPKKGCMGEAVRKIYGPEPKPVKVGGVQLSGYYSLAAQYWYQAHKAARKDPAWKKADRAWSDCMKDEGFRYPDPDEASTDSAWFRGDKPSQKEKKTAAADARCKLDTGYIQAVHAVESRAQKKAIAAHKKELDEQRAGAERAMANARKIVDDRS
>NZ_LN997842.1|WP_059253162.1|7318981_7320445_+|3'-terminal-RNA-ribose-2'-O-methyltransferase-Hen1
MFVTISTTGTAGSPATDLGYLLHKHPDKAQAFSTSYGTAHVFYPEADAERCTAALLLEIDTVALVRRGKGKGRGGAPDAALAQYVNDRPYAASSLLAVALSSVFSSALRGVCTARPERAAAPLPLRVEVPALPARGGPDLVRRLFEPLGWTVTADPVPLDTAFPEWGDSRYVRLLLESDRLTLAEALRHLYVLLPVLDDAKHYWVAADEVDKLLRAGEGWLPEHPEQKLITSRYLARRWSLTRQAMERLELVRLAEADDSDVADIDNAVADETETEEKPTPLAVQRRDAIIEALRAAGAARVLDLGCGEGQLVQALLKDARFTEILGVDVSMRALTIAARRLKLDRMGERQAARVRLVQGSLAYTDNRLKGYDAAVLSEVIEHLDLPRLPALEYAVFGHARPRTVVVTTPNVEYNVRWEALPAGHVRHGDHRFEWTREEFRGWAEAVAERHGYEVAFAPVGPDDPEVGPPTQMATFTIRTEKEAKAA

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Crispr_ID: NZ_LN997842_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN997842_17

7372680-7372771

Orphan

Consensus_repeat	Method
GCGCCCAGGCGGTGATCGACTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN997842_17

>merge|NZ_LN997842|17|7372680-7372771|CRISPRCasFinder
GCGCCCAGGCGGTGATCGACTGGTTCACCGGCACCTTCGTGCCCTTCTTCACGACGACCATCCCGAACGCCGCCCAGGCGGTGATCGACTGG

>NZ_LN997842|17|16|7372680-7372771|CRISPRCasFinder
GCGCCCAGGCGGTGATCGACTGG	TTCACCGGCACCTTCGTGCCCTTCTTCACGACGACCATCCCGAACG
CCGCCCAGGCGGTGATCGACTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN997842.1\|WP_059253327.1\|7381415_7382030_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059253298.1\|7366064_7367087_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340831
NZ_LN997842.1\|WP_059253323.1\|7380371_7380692_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059253318.1\|7379026_7379944_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|376556
NZ_LN997842.1\|WP_059253310.1\|7374355_7376590_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059253321.1\|7379968_7380334_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059253292.1\|7363660_7364434_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059253329.1\|7382169_7382448_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059253300.1\|7367513_7367876_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059253325.1\|7380872_7381190_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059253312.1\|7376593_7377682_+\|DUF5047-domain-containing-protein	unknown	unknown	gnl\|CDD\|293075
NZ_LN997842.1\|WP_059253301.1\|7367884_7368214_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059253299.1\|7367096_7367513_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059253316.1\|7378349_7378961_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059253306.1\|7369829_7370180_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059253315.1\|7377678_7378338_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059253302.1\|7368206_7368605_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059253304.1\|7368680_7369268_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059255298.1\|7369482_7369770_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059253296.1\|7365105_7366065_+\|phage-major-capsid-protein	unknown	unknown	gnl\|CDD\|377449

Protein	Function_ID	Function_description	E-value
NZ_LN997842.1\|WP_059253312.1\|7376593_7377682_+\|DUF5047-domain-containing-protein	gnl\|CDD\|293075	pfam16466, DUF5047, Domain of unknown function (DUF5047). This family consists of N-terminal of several uncharacterized proteins and peptidases around 360 residues in length and is mainly found in various Streptomyces species. The function of this family is unknown.	4.51305e-37
NZ_LN997842.1\|WP_059253318.1\|7379026_7379944_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|376556	pfam01510, Amidase_2, N-acetylmuramoyl-L-alanine amidase. This family includes zinc amidases that have N-acetylmuramoyl-L-alanine amidase activity EC:3.5.1.28. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala). The structure is known for the bacteriophage T7 structure and shows that two of the conserved histidines are zinc binding.	3.04028e-17
NZ_LN997842.1\|WP_059253296.1\|7365105_7366065_+\|phage-major-capsid-protein	gnl\|CDD\|377449	pfam05065, Phage_capsid, Phage capsid family. Family of bacteriophage hypothetical proteins and capsid proteins.	5.33818e-12
NZ_LN997842.1\|WP_059253298.1\|7366064_7367087_+\|glycosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	6.37976e-29

>NZ_LN997842.1|WP_059253306.1|7369829_7370180_+|hypothetical-protein
MSWRRLRVLIQHLPPESATWTALRNATPEDLLAEQAVSGEPEKGQWSHLEQLVAIVADRLARVEYVLICANTEKKSKRPDPPEPIRRPGTRPRKKKARLTEQSADRLFELLQGGAA
>NZ_LN997842.1|WP_059255298.1|7369482_7369770_+|hypothetical-protein
MEAEGHYVTAELCGEEVQVVPATVWRSSWQRMLQQGNLDGFAEKVLHPDDFELYLELDPTIADFLDFAQAAAAAAGESLGNSSGPAPSSRRTRRR
>NZ_LN997842.1|WP_059253304.1|7368680_7369268_+|hypothetical-protein
MVSITRAADLLEVGANGGGWVAPLGTTSPGDPAIQPAAPWAPLGAISDDGLVQGFDEDSQSFTPWGLTAPIRTAITSSLRTFGLTVWETGRTTVQSLQYRVDAADLAPTSGLTAFAETASPSPDRRAFWFVVLDGDTFQRGFYVPEGEITERSDVTHKQDEIAGFEWTITAYPDSAGNTVYHFDRVPETEAYTGS
>NZ_LN997842.1|WP_059253302.1|7368206_7368605_+|hypothetical-protein
MADVGSVDVELELMIALRGFLGDTVVVRDELDNNLLNELPTVQVQVVGGGDDGIRLDRPFVDIDIYDATRADAIALAAAIRGWILTQLRGSVTERAVFGRTGTISRPAVRPYENTALRRVGATYEIYCHPVS
>NZ_LN997842.1|WP_059253301.1|7367884_7368214_+|hypothetical-protein
MAARFKMKRKGVGQMLRMPGMRAEMLRRAEVIKSVAVAISPVYEKGSTAGQYKASWETASTARGGRNRDRAVAYVRNTSYYARWVEYGTEKVPAHHVLLRAAQVGGANG
>NZ_LN997842.1|WP_059253300.1|7367513_7367876_+|hypothetical-protein
MPAPYPFGETVRILRAGPSPGRDPRGQPLPGPDESFDVPGCVVTPREQTPTVGGSEQQARDTVIIGWTVYAPAGTDIRTTDKARIRGVVCEITGEPGDWGRNPFTGLRGVVQFAADRVTG
>NZ_LN997842.1|WP_059253299.1|7367096_7367513_+|hypothetical-protein
MAFVPPTAEQLGLYLGMSEVDGDRADLLIEQAVALCETVVKPLPDQATAVVLSAAGRAYVNPQQVSYETIGPMSVQRPQGSGGLYLTRSDKAALKSAAGRGGAFTVDPTPATADPSPTYPVDDDYGPPLKWEPGWGWV
>NZ_LN997842.1|WP_059253298.1|7366064_7367087_+|glycosyltransferase
MGAVPASAPGGTALRIVARVHAMPPEHNAGAEHMLVSMLRPLVERGHDVSVWLSRYGKASKVYEYRGIRVVPLEARLDFPTTVRKADVLISHLECVPSTSSLARGYGKPVVVVCHNTHRPTFRDMAAGGTALAVYNSQWMRREAELFFAEYPKAVRPAGELIVRPPVFASEYATRPGKAITLVNCNPEKGGKALDALARRMPEQQFLAVKGAYGEQILPDLPNVEVVDHVRGEDMREQVYARTKVLLMPSSYESWGRAGVEALASGIPVVAHPTPGLCESLGEAGVFVDRNDVPGYEAVLRKLLTPAEYRLASKRAKARSAELDPTAELAAWCNAVEALT
>NZ_LN997842.1|WP_059253296.1|7365105_7366065_+|phage-major-capsid-protein
MATNPVKLSTIDPVFLPETLVGPIFEKSVEGSAVMSLARRVPLSMTANTAVPVPLDVPMADWVNEGGRKPLSSGGVEVKQMSGKKIAVLIPVSMEVASSNAAGLWTQLQRDLPTAFARAFDMATIHGKNMKGGTGPFADYLAATSKAVSLGTTAQNQGGIWGDFVAGMEEIIDDDWDYTGTVADNRLKPKLLAATSTTGEPLFVATRQPGAGTGAALQGELIGEPIAYSRSVSGKLRRQSTSVDSGLRAIGGDFSQAAYGVGMEISIRLSREATYIDEDGGVHSAFQENLVLLLAEAYYGFVLGDAEAFVKFTGTPSGS
>NZ_LN997842.1|WP_059253292.1|7363660_7364434_+|hypothetical-protein
MATAVSDSGDAAARYRAAQIGLTRLLVRDVRGLRRLILPSRLRESIPDWLTAMTAVIEQYARTSSHLAAEFYDAQREAAGVPGVFTVPVAEPPPQEQTEASLRWATKDLWPREPGEATPAQLQPLSVRLDAAEVKAEQAAQKLVADTGRGTVQEAVRQDRQATAWARSAALGACAFCKLLAARGAVYKEDTADFRAHDGCHCGVVPVFKGQRFELSPHAREWERIYREYAQGHSGGQLRLFRRALAEHDSHPLPGSN
>NZ_LN997842.1|WP_059253310.1|7374355_7376590_+|hypothetical-protein
MAIPGNFLSEATSSMDPVVTGWTPQLNCTISKGSGGRVGDGCLAVRSTAAGEMQARIVGSVLVTAGTLYYAFADASGATVPERIGIRWLNKAGTVLGTTWSLTTMTASATWHRISVAGQAPVGTTRAQVILSSTPAAGGVYSYYENVYFGLPIRSYGNLFPFSVESTEIDATGWSAEVNATISRQVPVTTWSADWYYAGGHTLAMTVAAAGNASVATVDRPTVTPGTEYLAYAYLQPPVLSAQAWLELRFYDSAGNQVGSQRAYLAPVSTGMHRQLLSATAPSNAVTCGIAAGLDGASAGQVLRLETVVVKVAPEIMAGTVIPYANGSFEQDSGGWVTAAGAATLARSTPWGVGGYYGSYGLAISSATASSSTIRSPQFTVPDAPGLNWRAAVVAKSAAGAWSTVTVKIHWYDGVGGDHGASTGTVYALPAGSWYQLITDAVAPAGTVQAAVEVVASASATSSVMYVDAVALWQVLPQTAVQAVDADGYIKLTLRELPVGDLITVYRVGADSSRTLVRGEDGLINQNTILSDAMVIEDHEAPLNTAVSYYIELYSTAGALASTRASTAVMLTLTDTNTSWLKDPGNPQRNVLVMVAKAPDWQRPIEQASFVVRGRRNKVVLSGRRQGLEGDLAIWTRSEEERKALHLLLDSGNTLLWQAAPGMGVDDMYVHVAQITESRVGGAAQEPWRAWTLPLVEADMPVTTGVNGARGRTWQDILTEFATWQDVLDTYATWEDVLLDRRKG
>NZ_LN997842.1|WP_059253312.1|7376593_7377682_+|DUF5047-domain-containing-protein
MYPVSDRFLARLAESHHVATEVQLLLTDGRVVDLEHTGGSVTVDRSQAIRRTCTVTVADPSLIPRTPSDQLATYGARLLVSRGVDYGDGSSELVPLGVFRLDSVDGDVNDGPVTLHGKGLEAVVADDKLTAPYKATGTVVGAVTALIQRSIPTADIVSLITDTPIGSRTFDVEADPWAGAQEIAAAAGAEVYANADGTFVISTLPDLTTATPVWAVEATEGGVYIAGSRAMSSDGVYNGVLARGENTADNAPPVSYLATDSDPNSPTYWGGPFGRRPLFYSSSTLTTVNACAAAANLKLAAAKAPNASGDFSSLPNPALEPGDVIRVTHPDGTRELHQVASFSVPLEGGDFPIATISAKEDA
>NZ_LN997842.1|WP_059253315.1|7377678_7378338_+|hypothetical-protein
MTKSSLSVHRDLKWALRQAAQRAGERAPSVRGSDWRLATVTAVNADGTIVADGITARRMEAYRNAAVGDVAVLDQSSSGNWIAHGRLATAAALGPVPYTPTVTGGGSVTWSTRVGQYMRLDRLVFVSVRLVVNAAGSGSANVQIDMPSAVDGTLTDQHLTARFTENRVGYAIKFQGSSSTTLDRLRMQDQGTTNQVVNVTGADLTAGRIIGIEGFYFEA
>NZ_LN997842.1|WP_059253316.1|7378349_7378961_+|hypothetical-protein
MPVPDDYGQGINIASLTDAPDAEKLAKEIANALAKRGVMSFASASARGATIPAPTEGMLTWIRDADRLDLYDGGAWVTVSVGNRAWTTIALSSGWAQNGNSQGTFQYRIVNFAGEDTIMFRGGISRSSYPSSMPSSFTLNASSLPASARPSTLRTIVVPCSDVNSDRITLKLDITPSGDLNLFGTSSTAKPPWVGFNGCFASL
>NZ_LN997842.1|WP_059253318.1|7379026_7379944_+|N-acetylmuramoyl-L-alanine-amidase
MAPPMTASQFLAALKAEGLRVVEVGDWRNHNRNHKGPWGPVHGVMIHHTVTRGTQHTVEICRDGHTALPGPLCHGVIAKDGTVYLVGYGRANHAGLGDPDVLRAVINETALPADNEASTDGNRHFYGFECENLGDGKDPWPEEQIKAIVKAVTALCRHHGWSARSTIRHLGWQPGKVDPRGPGMQWDDILADVSARLGTKPPTKPAPTPTKPVVDLSKLVAAAKADPAASGTPVTYSGVRTVEAALVDAGYLAKAYSDGHYGTATVQAYAKWQRHLGYTGADADGIPGRTSLTRLGDKYGFDVVA
>NZ_LN997842.1|WP_059253321.1|7379968_7380334_+|hypothetical-protein
MKIFGREPAAWAALASITLQAIGAFVADFDAETQAWVNAVVLAVLGLIVAVMVHDGIIAAITGLAQAVLTLAAGLGLDWSAEKQALILSLITAVAQFAVRQVVTAPVPPQPAVARSGPRSA
>NZ_LN997842.1|WP_059253323.1|7380371_7380692_+|hypothetical-protein
MSEVFGITASDAGLGALLTLVVLLILTGRLVPRRTHEDALADRDNWRAAYLESEAARKVEHEHVAELLEMAKIGGHILTALPHPGHADEEEVSGVDQMDQASRARP
>NZ_LN997842.1|WP_059253325.1|7380872_7381190_+|hypothetical-protein
MSVDMWVNVSASVLATLACAVFVATYHVKAAWWRSEVGRNLVGFAAAVGALCLYTVLVTVWPTGCVAVVLRALRTLVLLAVGLLMVQRTRLLLRAQRESRDRTGV
>NZ_LN997842.1|WP_059253327.1|7381415_7382030_-|hypothetical-protein
MRARAAAATAALLLAALTACGGGDDDSSKPAAAPKSSAGEASPSSTPEQEHSLGDPARTTGDGGTGVLQITPDTIVFTRMASGETAKNGVFAVVTMKDKAMTAVAADEVPPITGGGWKWMAPDGEMIGFDSGNSSSVTMDKYDNADPVQPGGYQWRAQVFDLTPAQAKGGTLIYIDGEEKAFRWKMPAADSGPSVAEVKKQLAS
>NZ_LN997842.1|WP_059253329.1|7382169_7382448_-|hypothetical-protein
MTSYTGKATLLAEDGRKFDADAALTKDQSGNWRGTLAFHNATLVRQLINITDGHILVDGSPGEFIRPNTSDWTANTAGPFTMHILGSGPAPF

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Crispr_ID: NZ_LN997842_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN997842_18

7954831-7954938

Orphan

Consensus_repeat	Method
CAGTCCGCCGACCCGCCCGCTCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN997842_18

>merge|NZ_LN997842|18|7954831-7954938|CRISPRCasFinder
CAGTCCGCCGACCCGCCCGCTCCGTCCGCCCCTGTCGGCGATGGCGTGCTGGGCGCCGCGACTCCGCTCGACCCCTGGGCCGGTCAGCCCGCCGACCCGCCCGCTCCG

>NZ_LN997842|18|17|7954831-7954938|CRISPRCasFinder
CAGTCCGCCGACCCGCCCGCTCCG	TCCGCCCCTGTCGGCGATGGCGTGCTGGGCGCCGCGACTCCGCTCGACCCCTGGGCCGGT
CAGCCCGCCGACCCGCCCGCTCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN997842.1\|WP_059254103.1\|7949598_7952139_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616
NZ_LN997842.1\|WP_059254124.1\|7965520_7965880_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059254120.1\|7963358_7964879_+\|nitrate-reductase	unknown	unknown	gnl\|CDD\|271378
NZ_LN997842.1\|WP_059255349.1\|7947825_7949595_+\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|366419
NZ_LN997842.1\|WP_059254101.1\|7946947_7947691_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059254119.1\|7962225_7963245_+\|TIGR03842-family-LLM-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|163554
NZ_LN997842.1\|WP_059254099.1\|7945274_7946840_-\|CocE/NonD-family-hydrolase	unknown	unknown	gnl\|CDD\|334820
NZ_LN997842.1\|WP_059254097.1\|7944346_7945225_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_LN997842.1\|WP_059254122.1\|7964870_7965524_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997842.1\|WP_059254096.1\|7943705_7944350_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_LN997842.1\|WP_059254126.1\|7966025_7969700_+\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|378942
NZ_LN997842.1\|WP_059254092.1\|7942009_7942753_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_LN997842.1\|WP_059254113.1\|7958145_7959717_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377939
NZ_LN997842.1\|WP_059254105.1\|7952342_7953113_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|238519
NZ_LN997842.1\|WP_059254110.1\|7956844_7958128_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|99735
NZ_LN997842.1\|WP_059254109.1\|7956005_7956848_+\|acyltransferase	unknown	unknown	gnl\|CDD\|143592
NZ_LN997842.1\|WP_059254117.1\|7960819_7962214_+\|dihydropyrimidinase	unknown	unknown	gnl\|CDD\|236240
NZ_LN997842.1\|WP_059254094.1\|7942770_7943694_+\|glutamate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270408
NZ_LN997842.1\|WP_059255350.1\|7953175_7953427_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_LN997842.1\|WP_059254115.1\|7959872_7960715_+\|acyltransferase	unknown	unknown	gnl\|CDD\|143592

Protein	Function_ID	Function_description	E-value
NZ_LN997842.1\|WP_059254103.1\|7949598_7952139_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0
NZ_LN997842.1\|WP_059254126.1\|7966025_7969700_+\|CHAT-domain-containing-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	3.83421e-22
NZ_LN997842.1\|WP_059254120.1\|7963358_7964879_+\|nitrate-reductase	gnl\|CDD\|271378	cd11485, SLC-NCS1sbd_YbbW-like, uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily, YbbW-like; solute-binding domain. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. This subfamily includes the putative allantoin transporter Escherichia coli YbbW (also known as GlxB2). NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	0
NZ_LN997842.1\|WP_059255349.1\|7947825_7949595_+\|gamma-glutamyltransferase	gnl\|CDD\|366419	pfam01019, G_glu_transpept, Gamma-glutamyltranspeptidase.	0
NZ_LN997842.1\|WP_059254119.1\|7962225_7963245_+\|TIGR03842-family-LLM-class-F420-dependent-oxidoreductase	gnl\|CDD\|163554	TIGR03842, F420_CPS_4043, F420-dependent oxidoreductase, CPS_4043 family. This model represents a family of putative F420-dependent oxidoreductases, fairly closely related to 5,10-methylenetetrahydromethanopterin reductase (mer, TIGR03555), both within the bacterial luciferase-like monoxygenase (LLM) family. A fairly deep split (to about 40 % sequence identity) in the present family separates a strictly Actinobacterial clade from an alpha/beta/gamma-proteobacterial clade, in which the member is often the only apparent F420-dependent LLM family member. The specific function, and whether Actinobacterial and Proteobacterial clades differ in function, are unknown. [Unknown function, Enzymes of unknown specificity].	0
NZ_LN997842.1\|WP_059254099.1\|7945274_7946840_-\|CocE/NonD-family-hydrolase	gnl\|CDD\|334820	pfam02129, Peptidase_S15, X-Pro dipeptidyl-peptidase (S15 family).	7.80839e-35
NZ_LN997842.1\|WP_059254097.1\|7944346_7945225_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	6.13111e-56
NZ_LN997842.1\|WP_059254092.1\|7942009_7942753_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.79322e-154
NZ_LN997842.1\|WP_059254096.1\|7943705_7944350_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.07606e-53
NZ_LN997842.1\|WP_059254110.1\|7956844_7958128_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|99735	cd00610, OAT_like, Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.	1.54328e-129
NZ_LN997842.1\|WP_059254113.1\|7958145_7959717_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|377939	pfam07905, PucR, Purine catabolism regulatory protein-like family. The bacterial proteins found in this family are similar to the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR). PucR is thought to be a transcriptional activator involved in the induction of the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression. The other members of this family are also annotated as being putative regulatory proteins.	3.05273e-33
NZ_LN997842.1\|WP_059254105.1\|7952342_7953113_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|238519	cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.	3.48084e-120
NZ_LN997842.1\|WP_059254115.1\|7959872_7960715_+\|acyltransferase	gnl\|CDD\|143592	cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Beta-ASs from this subgroup are found in various oligomeric states, dimer (human), hexamer (calf liver), decamer (Arabidopsis and Zea mays), and in the case of Drosophila melanogaster beta-AS, as a homooctamer assembled as a left-handed helical turn, with the possibility of higher order oligomers formed by adding dimers at either end. Rat beta-AS changes its oligomeric state (hexamer, trimer, dodecamer) in response to allosteric effectors. Eukaryotic Saccharomyces kluyveri beta-AS belongs to a different superfamily.	3.25717e-174
NZ_LN997842.1\|WP_059254109.1\|7956005_7956848_+\|acyltransferase	gnl\|CDD\|143592	cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Beta-ASs from this subgroup are found in various oligomeric states, dimer (human), hexamer (calf liver), decamer (Arabidopsis and Zea mays), and in the case of Drosophila melanogaster beta-AS, as a homooctamer assembled as a left-handed helical turn, with the possibility of higher order oligomers formed by adding dimers at either end. Rat beta-AS changes its oligomeric state (hexamer, trimer, dodecamer) in response to allosteric effectors. Eukaryotic Saccharomyces kluyveri beta-AS belongs to a different superfamily.	1.18376e-150
NZ_LN997842.1\|WP_059254117.1\|7960819_7962214_+\|dihydropyrimidinase	gnl\|CDD\|236240	PRK08323, PRK08323, phenylhydantoinase; Validated.	0
NZ_LN997842.1\|WP_059254094.1\|7942770_7943694_+\|glutamate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270408	cd13690, PBP2_GluB, Substrate binding domain of ABC glutamate transporter; the type 2 periplasmic binding protein fold. This group includes periplasmic glutamate-binding domain GluB from Corynebacterium efficiens and its related proteins. The GluB domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.15424e-91
NZ_LN997842.1\|WP_059255350.1\|7953175_7953427_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	3.3389e-07

>NZ_LN997842.1|WP_059255350.1|7953175_7953427_+|XRE-family-transcriptional-regulator
MVRTPLTPEERERGERLGLLLRAARGDRSMAEVAAEAGVSAETLRKIETGRAPTPAFFTVAALAGVLGLSMDELVARCALVAV
>NZ_LN997842.1|WP_059254105.1|7952342_7953113_-|type-I-methionyl-aminopeptidase
MVELKTDTSIDAMHAAGRIVGRALTAVREAARVGVSLLELDEVAREVLREAGATSPFLGYRPSFAPTPFPAVICASVNDAIVHGIPTGYRLRDGDLLSVDCGAELDGWAGDSAISFTVGRPRPADLRLIETAERALAAGIEAAVAGNRIGDIAHAVGRVCRTAGYGIPQGFGGHGVGRRMHEDPEVPNEGRPGRGLPLRPGMVLAIEPMLIAGGKDGYHEAADGWTLRTNDGSRAAHVEHTVAVTESGPRILTARP
>NZ_LN997842.1|WP_059254103.1|7949598_7952139_-|ATP-dependent-Clp-protease-ATP-binding-subunit
MTNGYPPDPFGEFLARFFGGAVGGADRPRHIDIGRLLSQPARELVRGAAQYAAEHGSRDLDTQHLLRAAVSTEPTRSLLSRAGADPDSLAHEIDDRAGPVQHPPGEAPPPTSLSLTPAVKRALLDAHDMARASGAGYIGPEHVLSALAANPDSAAGHILNAARFSAGGLPPEAPEAPQPRPERQRPTGTPTLDKYGRDLTELAREGRIDPVIGRDTEIEQTIEVLSRRGKNNPVLIGDAGVGKTAIVEGLAQRIADGDVPDVLAGRRVVALDLTGVVAGTRYRGDFEERLNNIVEEIRAHSDRLIVFIDELHTVVGAGSGGEGGALDAGNILKPALARGELHIVGATTLEEFRRIEKDAALARRFQPVLVPEPTAEDTIEILRGLRDRYEAHHQVRYTDEALVAAVELSDRYLTDRRLPDKAIDLIDQAGARVRLGARTKGTDVRAMERETEQLVRDKDQAVADEDYEQAKQLRDRITELKQRIAEASGGDKADEGQDLAVTAEAIAEVVSRQTGIPVSRLTQEEKERLLGLEEHLHQRVVGQEEAVSVVSEAVLRSRAGLASPHRPIGSFLFLGPTGVGKTELARALAEALFGSEDRMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEVVRRHPYSLLLLDEVEKAHPDVFNILLQVLDDGRLTDSQGRTVDFTNTVIVMTSNLGSEVITRRGAGIGFGPGGAEADEEARREQVLRPLREHFRPEFLNRIDEIVVFRQLTGDQLRRITELLLQTTRRLVEGQGVSVEFTGAAVDWLAERGYEPEYGARPLRRTIQREVDNQLSRLLLNGTISEGSRVTVDVADGRLDFRAAQAQPPAPEL
>NZ_LN997842.1|WP_059255349.1|7947825_7949595_+|gamma-glutamyltransferase
MAVSAVVVSVGAAAPPTATTKATAAKVPVAVGYGGAVASVDADASAAGIEVLKNGGNAVDAAVATAAALGVTEPYSSGIGGGGYFVYYDARTRTVHTIDGRETAPLSADADLFTENGKPLPFADAVTSGLSVGTPGTPATWQKALDEWGSKGLRTLLRPAERLARDGFTVDETFRAQTAANETRFRYFPDTVKLFLPGGKLPVVGSTLKNPELARTYAELGRKGVGALYRGDIADDIVETVEHPPVDPASGWKARPGKLAEKDLAGYRVELQAPTRTSYRGLNVYSIAPSSSGGTTVGEALNILENTNLSKASEVRYLHRYIEASRIAFADRGRWVGDPAFESVPTRQLLSQRFADSRACLIKDDAVLGSPLAPGDPRHPVPCGRGGKAAPTTYEGENTTHLTVADKWGNVVAYTLTIEQTGGSGITVPGRGFLLNNELTDFSFAPANPAVHDPNLPGPGKRPRSSISPTIVLDRHGKPVVALGSPGGATIVTTVLQTLTGFLDRHLPLVDAIAAPRASQRNAAQTELEPALYDGDLRKRLEAIGHRFKLNPEIGAATGVQRLPGGKWLAAAEKVRRGGGSAMVVNPAP
>NZ_LN997842.1|WP_059254101.1|7946947_7947691_-|hypothetical-protein
MNDDLRNIVLGVIAAGISAALGWVARTYLWRRGLRRRQAFFGLPDHSESLLVVNRKAGGPELTVMRYDMFALLELAALIKDCNARVQIVAHDATQQGFGERTEFCVGGPYSNLRMAAHLSSLLPGVRMNVEAESGPELGALRIDAEEYRMERGRSEYVLLARLTADGREDVRPVFLFCGQRAITNQAATRYLARHHERLARKYGGGSFVLLLKVVNSQAYGPDVVELVADVTREARTPLPEPAVTTE
>NZ_LN997842.1|WP_059254099.1|7945274_7946840_-|CocE/NonD-family-hydrolase
MGQGRTALRTSAAAAVSAALLAGTVVGMAPAAQAAPAVRFVDIAGDGGTVLKANVLTPQGADGKRAYPLIVLPTSWGLPQVEYLAQAQRLADAGYVVLTYNVRGFWQSGGRIEVAGPPDIADASRVIDWALAHTPADPEHIGMAGVSYGAGISLLTAAHDKRVKAVAALSGWADLIDSIYSGRTQHLQAAAVLDGAATLTGRESPELRQIFDNLYSSNLTKEQEMIDWGRKRSATTYVDQLNKNGAAVMLANAWGDTVFPVNQYASFYEKLTVPKRLQLRPGDHATPELTGLFGLPNDVWTDTRRWFDHYLRGADNGVEREQPVRLKSRNAGGYEGYPDWKSVTATRKKIALAGSTTIRANVDSGADGGIVFLSSILDQVAQLPPVASLPLLPRRWAAVWQSERYGSAQRVRGTTTLHTTLTPTAESGTLVAHLYDVGPLGFGKLVTHAPYTWHGRTPGAPFAVDLELFSTAYDVPAGHRLALVVDTVDPLYAEHNPSGAQLTFSSPVDDPSYVSVPLGEQ
>NZ_LN997842.1|WP_059254097.1|7944346_7945225_+|amino-acid-ABC-transporter-permease
MTEATALYDLPGPRTRRRHALYGALSTVVILALLAWILYLLFDTGQFTSTKWMPFAYQGIQELLLRGLGNTLKAFAVAAVLSLALGGLLATGRLSDHRPVRWLATLVVEFFRAMPVLVMIFFIFVALRVQPLPALVAGLTLYNGSVLAEVFRSGVNAVERGQREAAFALGMRKTQVMAHVLVPQAVRAMLPAIISQLVVALKDTSLGFLITYEEFLHAGKLIASDLDYDLPFIPVVMVISPIYIGMCMLLSWFADWVSRRERRSPKTKGVAVATPGPGALLPGGVPPTAPRP
>NZ_LN997842.1|WP_059254096.1|7943705_7944350_+|amino-acid-ABC-transporter-permease
MNVLTDNFSTYGAGFLGTLELTVYASLLALALGFLMASFRVAPVGSLRVFGTAWVTVLRNTPLTLLFFAVLLGLPRFGLVLPFQVFAVLALGCYTSAFVCEALRSGINTVPKGQGEAARSLGMSFGQTLSLVVLPQAFRSVIPPVGSTLIALAKNSAIAGAFSVTELLGTYKTLNELGYNIIWTFVWIAAGYLVITLAISALFHALERTWGVPR
>NZ_LN997842.1|WP_059254094.1|7942770_7943694_+|glutamate-ABC-transporter-substrate-binding-protein
MFRTTRAPRALCAVLAGLLAGLATACGKEGSPPSKGPAAERLPHYQVAEGFRLPASRTWTRAKKRGHFVVGVKEDQPYLGEKDPATGTYSGFDIEIAKMMSASLGLPPKTIRFRTIASANRETALQNGQIDYYVGTYTINANRKKLVGFAGPYYLAGQSLLVRTDEHDIHGPQDLAGKRVCSAAGSTPYQRIKADYPKAVLVAYDTYSVCVDNLLTYQVEAVTTDDAILIGYAAKAPGELKVVGKPFSEEPYGIGVPHGDNALRFALDDALAAREKNGDWKKAYDATLGLSGVPAPQPPAIDRYPAS
>NZ_LN997842.1|WP_059254092.1|7942009_7942753_+|amino-acid-ABC-transporter-ATP-binding-protein
MAVDPLIELRNVNKYYGELHVLRDIDLTVGKGEVVVVIGPSGSGKSTLCRTINRLETIESGTITLDGQPLPAEGKALARLRAEVGMVFQSFNLFAHRTVLQNVSLAQVKVRKRKRDDADRRSRELLDRVGLLDQADKYPAQLSGGQQQRVAIARALAMEPKAMLFDEPTSALDPEMINEVLEVMRQLARDGMTMVVVTHEMGFARASANRVVFMADGRIVEDRSPDEFFTAPSSDRAKDFLSKILKH
>NZ_LN997842.1|WP_059254109.1|7956005_7956848_+|acyltransferase
MANVVRAALVQATWTGDTESMVAKHEEHAREAARRGAAVIGFQEVFNTPYFCQVQEPEHYRWAEPVPDGPTVRRMRELARETGMVIVVPVFEVEQSGFYYNTAAVIDADGSYLGKYRKHHIPQVRGFWEKYYFKPGNLGWPVFDTAVGKVGVYICYDRHFPEGWRQLGLNGAQLVYNPSATHRGLSAHLWRLEQPAAAVANEYFVAAINRVGQEEYGDNDFYGTSYFVDPRGQFVGAVASDTSEELLVRDLDFDLIEEVRQQWAFYRDRRPDAYEGLVQP
>NZ_LN997842.1|WP_059254110.1|7956844_7958128_+|aspartate-aminotransferase-family-protein
MNDLYARHRRVLPDWLALYYDDPIEISHGEGRYVWDSAGRRYLDFFGGILTTLTAHALPEVTKAVSEQAARIIHSSTLYLNRPMVELAERVAQVSGIPDARVFFTTSGTEANDTALLLATTYRRSNTLLAMRNSYHGRSFSAIGITGNRAWSPTSLSPLQTLYVHGGVRTRGPFAHLDDRAFIDACVADLKDLLGHTRPPAALIAEPVQGVGGFTSPPDGLYAAFRQVLRDHGILWIADEVQTGWGRTGDHFWGWQAHARSGPPDIVTFAKGIGNGMSVGGVIARAEIMNCLDAQSISTFGGTQVTMAAALANLAYLLEHDLQGNARRVGGLLIERLRAVGAQLPGVREVRGRGLMIGVELVRPGTDEADPQALAAVLEAAREGGLLIGKGGGHDTSALRITPPLSLTVAEAEEGAALLEHALRSTY
>NZ_LN997842.1|WP_059254113.1|7958145_7959717_+|PucR-family-transcriptional-regulator
MTSTSEDRHGPAPEPALSVRQVLTLERVLAGEPEVVAGRAQLDRPVRWVHVAEAADVGVMLSGGEMVLTTGVLLAGDEARQAEYIRSLHRAEAAAVVLGLGRAFPAPPEVMRRAAERCGLPMVVLHRPFPFAELTEEVQSRLVRRKYAAISLSETVRTALTGLITAGAPLQRLLDEIARHSGCPVVVTNLAHRVLGTAGERSAVDDVLRDWERIARQAGAGTGDGWIRAELGGRGERWGRLLLCGYRGDPATGRLLADRAAEALVLHRMLGGGCAHSWEEQSAQSLLTDLVSGVVPARQLLPRARAAGLPVNRRTFVPLVVRGPGPDRLDRVLRLLGLPGLAAELADGTATVLLSLAHDQDAGALTAHFATRLRAESEAVVAAADPRTAWEEVPAGLREARHVADAVAGSSAALDLPAVVRLKDVHLRGLIRLLRDDPQVQSFAERELDGLLCAAEPELLNVLRTYLATGRNKSRTAQLHHVSRPALYRRLEAIQARLGVDLDDFEQAASVHIALLAHDAQLG
>NZ_LN997842.1|WP_059254115.1|7959872_7960715_+|acyltransferase
MSRVIRAALFQTAWTGDKESMIQVHEQAARDAAAQGAHVLCFQELFYGPYFCQVQDKAFYEYAERIPEGPTVRRFQALARELGIVLVLPMYEEEQPGVLYNTAAVIDADGSYLGKYRKTHIPQVQGFWEKFYFRPGNSGWPVFDTAAGRIGVYICYDRHFPEGWRALGLAGAEIVFNPSATSRGLSRYLWQLEQPAAAVANEYFVGAINRVGVEDLGDNDFYGTTYFVDPEARFVGEVASDKETELVVRDLDLAALREVRDRWQFYRDRAPGTYGPLTEL
>NZ_LN997842.1|WP_059254117.1|7960819_7962214_+|dihydropyrimidinase
MTRRTAICGGLVITASDEIHADVLIEDTRIAALAVPGTHSWSADRTIDATGKYVIPGGVDAHTHMELPFGGTFASDTFETGTRAAAWGGTTTIVDFAVQSVGHTLREGLDAWHAKAEGNCAIDYAFHMIVSDVNQETLKEMDLLVEEGVTSFKQFMAYPGVFYSDDGQILRAMQRSADNGGLIMMHAENGIAIDVLVEQALARGETDPRYHGEVRKALLEAEATHRAIRLAQVAGAPLYVVHVSAMEAVAELARARDEGLHVFGETCPQYLFLSTDNLAEPGFEGAKYVCSTPLRPREHQAHLWKGLRTNDLQVVSTDHCPFCFTGQKELGRGDFSRIPNGLPGVENRMDLLHQAVVDGHISRRRWIEIACATPARMFGMYPKKGTIAPGADADVVLYDPHAEQVLSAETHHMNVDYSAYEGRRVTGRVETVLSRGELVIDRREYTGRAGHGAYIPRSTCQYLH
>NZ_LN997842.1|WP_059254119.1|7962225_7963245_+|TIGR03842-family-LLM-class-F420-dependent-oxidoreductase
MDFGLVLQTDPPASRVVSLMKRAERNGFRYGWTFDSAVLWQEPFVIYSQILANTQKLKVGPMVTNPGTRTWEVTASTFATLNDMFGNRTVCGIGRGDSAMRVAGRKPNTLARISEAMKVIRALGRGEEADLGGTKIRFPWIREGAEVPVWMAAYGPKALKMTGEEADGFILQLADLYLTAYMVKAVKDAAVAAGRDPSEVTICVAAPAYVTEDDSPEALAHARDQCRWFGGMVGNHVADLVARYGEHSAQVPQELTDYIKARQGYDYAHHGRSGNPDTQFVPDEIVDRFCVIGPAEKHIEKLTALRALGVDQFAVYDMHDAQEATIEAYGSRVIPAVNS
>NZ_LN997842.1|WP_059254120.1|7963358_7964879_+|nitrate-reductase
MTETAPPAVPISGQVTLPDGRVELAPGTPPPSGPYANEDLLPVPAAGRTWTTYNFSALWVGMAHNTASWTLASGLIAVGMDWKQAVFTIALANLVVLVPMLLTGHAGPKYGIPFPVFARASFGVRGANLPAVVRALVACGWFGIQTWIGGEAIYFLAGKLIGDGWSDASHIGGYAWTMWLSFAIFWAIQVAIICRGMETIRRFENWAAPFVLVGAFVMLWWMSGKAGGVGPLFDQPSRLGWGGDFWKLFWPSLMGMIGFWSTLSLNIPDFTRYGRSQRAQTWGQALGLPTTMTLFAFLSVLVTSGSQAVYGQPVWDPVQLAAKTDNVVGLLYALVTVLVATLSVNIAANLVSPAFDFSNVAPRKVSFRAGALITAVLAVLIFPWKLYSDPQGYIFTWLGLVGGLLGTVAGILVADYWLLRRTRLDLTDLYRSGGRYWYAGGWNWRAVAAFLAGGVLAVGGADFDPLVDGRPIPALAPLADYGWAVGLCTSLLLYVGLTLARRPASR
>NZ_LN997842.1|WP_059254122.1|7964870_7965524_-|hypothetical-protein
MTPHWQVRPGPPGTPADRQAARQTRELLAGELSRAREAALAWRNGLAALFAGLLGFGLVKGRTDVGKLASPYDALVGGALLLCLLCGTLGALLLLRAAHGAPTGVRLPTGVPAPAAALHLGDHMETRRTVRALTRGVALTIACGALLVTAVALTWYGPEKAGPRILVRTPSGVVCGTPVRTGDGRLLLRTDAGEVAVRLARAEAFAAVEACPASPSP
>NZ_LN997842.1|WP_059254124.1|7965520_7965880_-|hypothetical-protein
MLEALARPRARRGTVTNSGPGPGTSVPYLETTHDDYAVRYTTGLRVEAADAGVVVLYGRCPRCGCAFTYTHTDRVFRAPRRTPRPAHVPVLCACEAGHPGRPADETGCGAYWNVLVERG
>NZ_LN997842.1|WP_059254126.1|7966025_7969700_+|CHAT-domain-containing-protein
MSEAGTVPVADRAAAALARTDGFSVPVEPEAYTGVRGRELDALTGELEALLAELTDTEGGAATAAAVAARLGRCRAVRFLLEGRQADRERALALLLEARGSDLLGEEEREAAYRSLVALVGSRMVRLSREVLGGAEDQWTADRLVTLAALGTPLTQGGEGVVEDSALLVRLLLEREHPQMTPRLRDNLTLYGEMSEAMLAGDTGRFVRGGRHVLANLADEALPTPLGTLLALLLGHMERTLTDSARWPDRGHDTPAEAADEATEVRNTMAQFLAMAEVMSPGTVGPGNVSALLAELSGDGAATGAEGRAPLPSRMVAALVHVALAVRTGDMEGFRQALRLMHEAAADGELDSRTHGEWLRTVVPGVLLGAALTGGSLQDEDMAREVFEALRWDDDPMSVDAANLRVCGQAARLMARLTSALDRRDVEGVEDVIDALCELELDETYAGAEEWTGALTAFVLGAAYLGRVVHAPAGDGRTSDLRAAVHHLHRAVETSVDMPAMRDLLDITWAPLITLTAIAESDPGRIAEGVRRARAALERTGFSAEFRPRARGGIAIALDTLHQLTGETAALDEAIAELTRALTELPDGAPGGAGLTWDLAALRAKRAALRTDAPEADDDLRAAVDLARASLRLSADDVLLQQGVHRGLRIARAAADRGRKAAFWALRAGRTEDAIGCLEAGRSLVLGAAAVSAGVADRLAALGENDLAERWREAAAGSAGERGDDRSLLELTADAGADAPADPRHRTPLELLAAPGSGAPALPGDLRRRSLEVLRGQGGDDVQPVLATVGDLRAGLRATGADALLYLVPGVADPDGAVLVVTADGPVTALPLPGLAPDGRAPVAAYLAAGADRQRLEAADDGTGNPRERERAVRRWQRALDDLCGWAGEVLGPVLGHLGLWDRALAEAGLTGAARVPDAVRLVIVPCGDLGVVPWQAAVLEPPGGYGVPRAVRACEIAVLTHAAAGREFLRAAARRRMAPADRPALVFHGLDDLAWAEEEIDTLAAVHYREAVVHRPDENPATPETVLGLLGGRAAAPASLVHLACHGLAGPDPTESVLHLAPPDGEPSGPGGELTLSALLETPAEGDAFRAAGPLVVCGGCETDLTTRDHDEALTLTSVLVHRLAADAIGSRWQVDDMRSEILMLVLHDALGRGLAPPDALRAAQRWMLTPPDRRPPVRALKGISAAWRLTEDLRDRPDTWAGFVHQGNPAPAPARRQEGEDA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LN997842_15	15.1\|6841609\|37\|NZ_LN997842\|CRISPRCasFinder	6841609-6841645	37	NZ_LN997842.1	6841645-6841681	0	1.0

1. spacer 15.1|6841609|37|NZ_LN997842|CRISPRCasFinder matches to position: 6841645-6841681, mismatch: 0, identity: 1.0

ccggtacggcgggcttggtcgtcgtggagggcttggc	CRISPR spacer
ccggtacggcgggcttggtcgtcgtggagggcttggc	Protospacer
*************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NC_016972	Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG2, complete sequence	46023-46053	5	0.839
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	47721-47751	6	0.806
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	JN699011	Mycobacterium phage Stinger, complete genome	10230-10260	6	0.806
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NC_042034	Mycobacterium phage ChrisnMich, complete sequence	10685-10715	6	0.806
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NC_011044	Mycobacterium phage Nigel, complete genome	10594-10624	6	0.806
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	KF493881	Mycobacterium phage JAMaL, complete genome	11950-11980	6	0.806
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NC_048759	Serratia phage MTx, partial genome	2984-3014	6	0.806
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_LR594670	Variovorax sp. SRS16 plasmid 5	821-851	7	0.774
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP043477	Xanthomonas hyacinthi strain CFBP 1156 plasmid unnamed, complete sequence	37833-37863	7	0.774
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_LR594674	Variovorax sp. PBL-E5 plasmid 4	34205-34235	7	0.774
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1348949-1348979	7	0.774
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_LR594665	Variovorax sp. RA8 plasmid 4	821-851	7	0.774
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NC_008195	Mycobacterium phage Cooper, complete genome	10767-10797	7	0.774
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NC_005793	Achromobacter denitrificans plasmid pEST4011, complete sequence	3429-3459	7	0.774
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NC_019378	Burkholderia cepacia plasmid pIJB1, complete sequence	49166-49196	7	0.774
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NC_025029	Uncultured bacterium pAKD4 plasmid pAKD4, complete sequence	44204-44234	7	0.774
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NC_031059	Rhodovulum phage vB_RhkS_P1, complete genome	24023-24053	7	0.774
NZ_LN997842_13	13.9\|6345519\|37\|NZ_LN997842\|CRT	6345519-6345555	37	NZ_CP010860	Marinovum algicola DG 898 plasmid pMaD5, complete sequence	85558-85594	7	0.811
NZ_LN997842_11	11.1\|5862465\|31\|NZ_LN997842\|CRISPRCasFinder	5862465-5862495	31	NZ_CP033582	Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence	124475-124505	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	1598485-1598515	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	1538690-1538720	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	1143697-1143727	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	1523621-1523651	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	1571005-1571035	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	170090-170120	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	235212-235242	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	154866-154896	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	1466784-1466814	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	694902-694932	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	59613-59643	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	1581764-1581794	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	153465-153495	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	156240-156270	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	221002-221032	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP045095	Streptomyces sp. GY16 plasmid unnamed1, complete sequence	9116-9146	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	1403493-1403523	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	1519989-1520019	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	1069604-1069634	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	1108290-1108320	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	363233-363263	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	150829-150859	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	153465-153495	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1035679-1035709	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	579821-579851	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	140572-140602	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NC_005838	Thermus thermophilus HB27 plasmid pTT27, complete sequence	96897-96927	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NC_009453	Arthrobacter sp. Rue61a plasmid pAL1, complete sequence	37108-37138	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	MK059749	Mycobacterium phage CRB2, complete genome	69236-69266	8	0.742
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	MN693131	Marine virus AFVG_25M472, complete genome	10546-10576	8	0.742
NZ_LN997842_13	13.9\|6345519\|37\|NZ_LN997842\|CRT	6345519-6345555	37	JN699011	Mycobacterium phage Stinger, complete genome	10230-10266	8	0.784
NZ_LN997842_13	13.9\|6345519\|37\|NZ_LN997842\|CRT	6345519-6345555	37	NC_011044	Mycobacterium phage Nigel, complete genome	10594-10630	8	0.784
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	JN699011	Mycobacterium phage Stinger, complete genome	10263-10293	9	0.71
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	NC_011044	Mycobacterium phage Nigel, complete genome	10627-10657	9	0.71
NZ_LN997842_13	13.4\|6345177\|31\|NZ_LN997842\|CRT	6345177-6345207	31	MN617843	Mycobacterium phage Quesadilla, complete genome	68176-68206	9	0.71
NZ_LN997842_13	13.9\|6345519\|37\|NZ_LN997842\|CRT	6345519-6345555	37	NC_042034	Mycobacterium phage ChrisnMich, complete sequence	10685-10721	9	0.757
NZ_LN997842_13	13.9\|6345519\|37\|NZ_LN997842\|CRT	6345519-6345555	37	KF493881	Mycobacterium phage JAMaL, complete genome	11950-11986	9	0.757
NZ_LN997842_13	13.9\|6345519\|37\|NZ_LN997842\|CRT	6345519-6345555	37	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	47721-47757	9	0.757
NZ_LN997842_13	13.9\|6345519\|37\|NZ_LN997842\|CRT	6345519-6345555	37	NZ_CP012185	Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence	158658-158694	9	0.757
NZ_LN997842_13	13.9\|6345519\|37\|NZ_LN997842\|CRT	6345519-6345555	37	NZ_CP012182	Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence	82013-82049	9	0.757
NZ_LN997842_13	13.9\|6345519\|37\|NZ_LN997842\|CRT	6345519-6345555	37	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	141449-141485	10	0.73

1. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NC_016972 (Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG2, complete sequence) position: , mismatch: 5, identity: 0.839

--cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ggcggc--gacctcggcctcggcggcttccggg	Protospacer
  ****  *.************ *********

2. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 6, identity: 0.806

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ccgggcggcctcggcctcgagggcttccagc	Protospacer
* *  .*************.********.**

3. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to JN699011 (Mycobacterium phage Stinger, complete genome) position: , mismatch: 6, identity: 0.806

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcgtcggccggggcctcgggggcttccggc	Protospacer
*   *.****  *******************

4. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NC_042034 (Mycobacterium phage ChrisnMich, complete sequence) position: , mismatch: 6, identity: 0.806

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcgtcggccggggcctcgggggcttccggc	Protospacer
*   *.****  *******************

5. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NC_011044 (Mycobacterium phage Nigel, complete genome) position: , mismatch: 6, identity: 0.806

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcgtcggccggggcctcgggggcttccggc	Protospacer
*   *.****  *******************

6. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to KF493881 (Mycobacterium phage JAMaL, complete genome) position: , mismatch: 6, identity: 0.806

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcgtcggccggggcctcgggggcttccggc	Protospacer
*   *.****  *******************

7. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NC_048759 (Serratia phage MTx, partial genome) position: , mismatch: 6, identity: 0.806

cggcttggc---ctcggcctcgggggcttccggc	CRISPR spacer
---cttaaccggctcggcctccggggcttccggc	Protospacer
   ***..*   ********* ************

8. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_LR594670 (Variovorax sp. SRS16 plasmid 5) position: , mismatch: 7, identity: 0.774

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
cggcttcgcctcggcctcgggagcggccttt	Protospacer
****** **************.**  **  .

9. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP043477 (Xanthomonas hyacinthi strain CFBP 1156 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
cggcttcgcctcggcctcgggagcggccttt	Protospacer
****** **************.**  **  .

10. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_LR594674 (Variovorax sp. PBL-E5 plasmid 4) position: , mismatch: 7, identity: 0.774

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
cggcttcgcctcggcctcgggagcggccttt	Protospacer
****** **************.**  **  .

11. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.774

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
cttggtggcctcggccttgggggcctccgcc	Protospacer
*    ************.******.**** *

12. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_LR594665 (Variovorax sp. RA8 plasmid 4) position: , mismatch: 7, identity: 0.774

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
cggcttcgcctcggcctcgggagcggccttt	Protospacer
****** **************.**  **  .

13. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NC_008195 (Mycobacterium phage Cooper, complete genome) position: , mismatch: 7, identity: 0.774

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcgtcagccggggcctcgggggcttccggc	Protospacer
*   *..***  *******************

14. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NC_005793 (Achromobacter denitrificans plasmid pEST4011, complete sequence) position: , mismatch: 7, identity: 0.774

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
cggcttcgcctcggcctcgggagcggccttt	Protospacer
****** **************.**  **  .

15. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NC_019378 (Burkholderia cepacia plasmid pIJB1, complete sequence) position: , mismatch: 7, identity: 0.774

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
cggcttcgcctcggcctcgggagcggccttt	Protospacer
****** **************.**  **  .

16. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NC_025029 (Uncultured bacterium pAKD4 plasmid pAKD4, complete sequence) position: , mismatch: 7, identity: 0.774

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
cggcttcgcctcggcctcgggagcggccttt	Protospacer
****** **************.**  **  .

17. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NC_031059 (Rhodovulum phage vB_RhkS_P1, complete genome) position: , mismatch: 7, identity: 0.774

cggcttggcctcggcctcgggggcttccggc--	CRISPR spacer
cggcttggccccggcctcggcgg--tgaagccg	Protospacer
**********.********* **  *  .**

18. spacer 13.9|6345519|37|NZ_LN997842|CRT matches to NZ_CP010860 (Marinovum algicola DG 898 plasmid pMaD5, complete sequence) position: , mismatch: 7, identity: 0.811

cggcttggcctcggcctcggcctcgggggcttccggc---	CRISPR spacer
cgcctcggcctcggcctcggcctc---ggcttgcgccgcg	Protospacer
** **.******************   ***** ** *

19. spacer 11.1|5862465|31|NZ_LN997842|CRISPRCasFinder matches to NZ_CP033582 (Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence) position: , mismatch: 8, identity: 0.742

gcgactgcctcgaactggctcttgcctggta	CRISPR spacer
ctgactacctcgaactggctcatgccgagag	Protospacer
 .****.************** **** .* .

20. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

21. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

22. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

23. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

24. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

25. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

26. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

27. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

28. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

29. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

30. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

31. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

32. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

33. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

34. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

35. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP045095 (Streptomyces sp. GY16 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
cggctcggcctcggtctcgggggcgaggacc	Protospacer
*****.********.*********    . *

36. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

37. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

38. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

39. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

40. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

41. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

42. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ctcctcggcctcggtctcgggggcttcttcg	Protospacer
*  **.********.************.

43. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
ggcgggggccgcggccttgggggcttccgcc	Protospacer
 *    **** ******.*********** *

44. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
gcgctcggcctcggcctcgcgggctacgcgg	Protospacer
  ***.************* ***** *  *

45. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NC_006462 (Thermus thermophilus HB8 plasmid pTT27, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
caggccagcctgggcctcgggcgcttccggg	Protospacer
*.* ...**** ********* ********

46. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NC_005838 (Thermus thermophilus HB27 plasmid pTT27, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
caggccagcctgggcctcgggcgcttccggg	Protospacer
*.* ...**** ********* ********

47. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NC_009453 (Arthrobacter sp. Rue61a plasmid pAL1, complete sequence) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
cggcttggcctcggccccggaggacaccccg	Protospacer
****************.***.** . **

48. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to MK059749 (Mycobacterium phage CRB2, complete genome) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
cgcctcggcctcggcctcgggggtggcccag	Protospacer
** **.*****************.  ** .

49. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to MN693131 (Marine virus AFVG_25M472, complete genome) position: , mismatch: 8, identity: 0.742

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
aaccttggcctcggtctcggcggcttttgtc	Protospacer
 . ***********.***** *****..* *

50. spacer 13.9|6345519|37|NZ_LN997842|CRT matches to JN699011 (Mycobacterium phage Stinger, complete genome) position: , mismatch: 8, identity: 0.784

cggcttggcctcggcctcggcctcgggggcttccggc	CRISPR spacer
cggtgcctcgtcggccggggcctcgggggcttccggc	Protospacer
***. .  * ******  *******************

51. spacer 13.9|6345519|37|NZ_LN997842|CRT matches to NC_011044 (Mycobacterium phage Nigel, complete genome) position: , mismatch: 8, identity: 0.784

cggcttggcctcggcctcggcctcgggggcttccggc	CRISPR spacer
cggtgcctcgtcggccggggcctcgggggcttccggc	Protospacer
***. .  * ******  *******************

52. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to JN699011 (Mycobacterium phage Stinger, complete genome) position: , mismatch: 9, identity: 0.71

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
accaccggcatcgccctcgggggcttccggt	Protospacer
    ..*** *** ****************.

53. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to NC_011044 (Mycobacterium phage Nigel, complete genome) position: , mismatch: 9, identity: 0.71

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
gccaccggcatcgccctcgggggcttccggt	Protospacer
    ..*** *** ****************.

54. spacer 13.4|6345177|31|NZ_LN997842|CRT matches to MN617843 (Mycobacterium phage Quesadilla, complete genome) position: , mismatch: 9, identity: 0.71

cggcttggcctcggcctcgggggcttccggc	CRISPR spacer
cgcctcggcctcggcctcgggggtggcgaag	Protospacer
** **.*****************.  * ..

55. spacer 13.9|6345519|37|NZ_LN997842|CRT matches to NC_042034 (Mycobacterium phage ChrisnMich, complete sequence) position: , mismatch: 9, identity: 0.757

cggcttggcctcggcctcggcctcgggggcttccggc	CRISPR spacer
gggtgcctcgtcggccggggcctcgggggcttccggc	Protospacer
 **. .  * ******  *******************

56. spacer 13.9|6345519|37|NZ_LN997842|CRT matches to KF493881 (Mycobacterium phage JAMaL, complete genome) position: , mismatch: 9, identity: 0.757

cggcttggcctcggcctcggcctcgggggcttccggc	CRISPR spacer
ctcatcctcgtcggccggggcctcgggggcttccggc	Protospacer
*   *.  * ******  *******************

57. spacer 13.9|6345519|37|NZ_LN997842|CRT matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 9, identity: 0.757

cggcttggcct---cggcctcggcctcgggggcttccggc	CRISPR spacer
---ctcgagccgggcggcctcggcctcgagggcttccagc	Protospacer
   **.*. *.   **************.********.**

58. spacer 13.9|6345519|37|NZ_LN997842|CRT matches to NZ_CP012185 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence) position: , mismatch: 9, identity: 0.757

cggcttggcctcggcctcggcctcgggggct--tccggc	CRISPR spacer
cgcctcggcctcggcctcggcctcggaaaccgaaccg--	Protospacer
** **.********************...*.   ***

59. spacer 13.9|6345519|37|NZ_LN997842|CRT matches to NZ_CP012182 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence) position: , mismatch: 9, identity: 0.757

cggcttggcctcggcctcggcctcgggggct--tccggc	CRISPR spacer
cgcctcggcctcggcctcggcctcggaaaccgaaccg--	Protospacer
** **.********************...*.   ***

60. spacer 13.9|6345519|37|NZ_LN997842|CRT matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 10, identity: 0.73

cggct--tggcctcggcctcggcctcgggggcttccggc	CRISPR spacer
--gccgatggcctcggcctcggcctcggcagctacgtcg	Protospacer
  **.  ********************* .*** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4552138 : 4614059

Bacillus_phage(28.57%)

tail,plate,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059250138.1\|4552138_4553365_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.0e-61	34.4
WP_059250139.1\|4553415_4554381_+	nucleoside hydrolase	NA	NA	NA	NA
WP_059250140.1\|4554703_4555555_+	isocitrate lyase/PEP mutase family protein	NA	NA	NA	NA
WP_059250141.1\|4555659_4556751_+	bile acid:sodium symporter	NA	NA	NA	NA
WP_059250142.1\|4556638_4557757_-	HoxN/HupN/NixA family nickel/cobalt transporter	NA	NA	NA	NA
WP_059250143.1\|4558049_4558400_+	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA
WP_059250144.1\|4558480_4560139_+	glycoside hydrolase family 13 protein	NA	NA	NA	NA
WP_059250145.1\|4560135_4560888_-	DUF4142 domain-containing protein	NA	NA	NA	NA
WP_059250146.1\|4561144_4563436_+	hypothetical protein	NA	NA	NA	NA
WP_059250147.1\|4563740_4564415_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_059250148.1\|4564539_4565487_+	aquaporin family protein	NA	NA	NA	NA
WP_079081326.1\|4565498_4566506_-	hypothetical protein	NA	NA	NA	NA
WP_059250150.1\|4567142_4572314_+	GTP-binding protein	NA	NA	NA	NA
WP_059250151.1\|4572315_4572639_+	hypothetical protein	NA	NA	NA	NA
WP_059255053.1\|4572635_4573268_+	hypothetical protein	NA	NA	NA	NA
WP_079081004.1\|4573280_4573571_-	hypothetical protein	NA	NA	NA	NA
WP_059250153.1\|4573953_4574472_-	SigE family RNA polymerase sigma factor	NA	NA	NA	NA
WP_059250154.1\|4574618_4575638_+	hypothetical protein	NA	NA	NA	NA
WP_059250155.1\|4575736_4577044_+	hypothetical protein	NA	NA	NA	NA
WP_059250156.1\|4577187_4577976_+	hypothetical protein	NA	NA	NA	NA
WP_059250157.1\|4578028_4578403_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_059250158.1\|4578515_4578938_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_030736617.1\|4579214_4579418_-	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	3.6e-16	59.7
WP_059250159.1\|4579648_4579987_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_059250160.1\|4580303_4580735_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_059250161.1\|4580934_4582113_+	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_059250162.1\|4582199_4583141_+	STAS domain-containing protein	NA	NA	NA	NA
WP_059250163.1\|4583137_4583563_+	STAS domain-containing protein	NA	NA	NA	NA
WP_059250164.1\|4583562_4584006_+	anti-sigma regulatory factor	NA	NA	NA	NA
WP_059250165.1\|4584199_4586107_+	GAF domain-containing protein	NA	NA	NA	NA
WP_059250166.1\|4586084_4587272_+	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_059255054.1\|4587310_4587790_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_059250167.1\|4587998_4588844_-	RNA polymerase sigma factor SigF	A0A0A0RV91	Bacillus_phage	4.0e-24	33.6
WP_059250168.1\|4589187_4589772_+	photosystem reaction center subunit H	NA	NA	NA	NA
WP_059250169.1\|4589768_4590197_+	PRC-barrel domain containing protein	NA	NA	NA	NA
WP_059250170.1\|4590373_4591681_-	hypothetical protein	NA	NA	NA	NA
WP_079081006.1\|4591882_4592611_+	response regulator transcription factor	NA	NA	NA	NA
WP_107117997.1\|4592823_4596027_+	hypothetical protein	NA	NA	NA	NA
WP_059250172.1\|4596023_4596731_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_059250173.1\|4596727_4596943_+	hypothetical protein	NA	NA	NA	NA
WP_107118083.1\|4597340_4599407_+	ATP-binding protein	A0A0R6PCP6	Moraxella_phage	2.6e-21	32.2
WP_059250175.1\|4599421_4599892_-	hypothetical protein	NA	NA	NA	NA
WP_059250176.1\|4599915_4601427_-	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_059250177.1\|4601675_4603241_+\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	8.3e-68	34.0
WP_059250178.1\|4603295_4603736_+\|tail	phage tail protein	NA	NA	NA	NA
WP_059250179.1\|4603732_4604227_+	hypothetical protein	NA	NA	NA	NA
WP_059250180.1\|4604386_4607584_+	hypothetical protein	NA	NA	NA	NA
WP_059250181.1\|4607640_4608066_+\|tail	phage tail protein	A0A059XEM3	uncultured_phage	4.6e-05	28.3
WP_059250182.1\|4608142_4608865_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_059250183.1\|4608861_4610682_+	type IV secretion protein Rhs	NA	NA	NA	NA
WP_059250184.1\|4610760_4611078_+	hypothetical protein	NA	NA	NA	NA
WP_059250185.1\|4611077_4611500_+\|plate	baseplate protein	A0A1D8KT65	Synechococcus_phage	9.9e-08	33.3
WP_059250186.1\|4611499_4613461_+\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_059250187.1\|4613495_4614059_+\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_2

5011202 : 5048763

Streptomyces_phage(61.11%)

portal,protease,capsid,terminase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059255095.1\|5011202_5011682_+\|terminase	phage terminase small subunit P27 family	A0A1B3B1V2	Gordonia_phage	2.5e-39	55.6
WP_079081039.1\|5011653_5013444_+\|terminase	terminase large subunit	A0A1B3B1U6	Gordonia_phage	1.5e-209	61.7
WP_059250774.1\|5013468_5013690_+	hypothetical protein	NA	NA	NA	NA
WP_059250776.1\|5013689_5015642_+\|portal	phage portal protein	A0A222ZFM5	Arthrobacter_phage	8.6e-123	41.0
WP_107118088.1\|5015655_5016555_+\|head,protease	HK97 family phage prohead protease	A0A222ZEN8	Arthrobacter_phage	1.5e-45	49.1
WP_059250780.1\|5016561_5017896_+\|capsid	phage major capsid protein	M4WNS1	Mycobacterium_phage	1.3e-77	41.3
WP_059250782.1\|5017910_5018123_+	hypothetical protein	NA	NA	NA	NA
WP_059250784.1\|5018203_5018668_+	hypothetical protein	NA	NA	NA	NA
WP_059250786.1\|5018657_5019221_+	hypothetical protein	NA	NA	NA	NA
WP_059250788.1\|5019220_5019589_+	hypothetical protein	A0A2P1JSY3	Streptomyces_phage	4.3e-15	40.8
WP_059250790.1\|5019604_5019883_+	hypothetical protein	A0A2H4P9V4	Gordonia_phage	4.8e-11	50.6
WP_059250792.1\|5019879_5020296_+	hypothetical protein	NA	NA	NA	NA
WP_059250794.1\|5020352_5021123_+	Ig domain-containing protein	A0A2H4PA05	Gordonia_phage	4.0e-23	36.7
WP_059250796.1\|5021208_5021565_+	hypothetical protein	NA	NA	NA	NA
WP_059250797.1\|5021570_5021945_+	hypothetical protein	Q6VY44	Streptomyces_phage	7.1e-26	55.0
WP_059250799.1\|5022055_5022367_+	hypothetical protein	NA	NA	NA	NA
WP_107118089.1\|5022606_5026686_+	replication protein	Q6VY42	Streptomyces_phage	7.2e-172	47.2
WP_059250804.1\|5026703_5027582_+	hypothetical protein	A0A0K1Y5X3	Streptomyces_phage	2.2e-62	50.9
WP_059250806.1\|5027578_5028733_+	hypothetical protein	A0A0K1Y599	Streptomyces_phage	9.0e-112	56.4
WP_059250808.1\|5028732_5029668_+	hypothetical protein	A0A0K1Y5A0	Streptomyces_phage	1.3e-97	60.0
WP_059250810.1\|5029683_5030319_+	hypothetical protein	A0A0K1Y5B7	Streptomyces_phage	1.8e-45	44.8
WP_059250812.1\|5030336_5032868_+	hypothetical protein	A0A0K1Y5U2	Streptomyces_phage	9.9e-71	37.1
WP_059250814.1\|5032931_5033369_+	hypothetical protein	NA	NA	NA	NA
WP_079081041.1\|5033365_5034325_+	hypothetical protein	NA	NA	NA	NA
WP_059250818.1\|5034321_5034675_+	hypothetical protein	NA	NA	NA	NA
WP_059250821.1\|5034687_5034957_+	hypothetical protein	NA	NA	NA	NA
WP_059250822.1\|5035035_5035368_+	hypothetical protein	A0A0K1Y5A5	Streptomyces_phage	1.4e-12	69.5
WP_079081042.1\|5035364_5036063_+	hypothetical protein	A0A0M4QTS6	Streptomyces_phage	4.7e-31	80.9
WP_059250824.1\|5036151_5036625_-	hypothetical protein	NA	NA	NA	NA
WP_079081043.1\|5036641_5037898_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_059255097.1\|5038183_5038771_+	hypothetical protein	NA	NA	NA	NA
WP_059250826.1\|5038760_5039198_+	hypothetical protein	NA	NA	NA	NA
WP_059250829.1\|5039200_5039395_+	hypothetical protein	NA	NA	NA	NA
WP_059250831.1\|5039657_5040413_+	hypothetical protein	NA	NA	NA	NA
WP_059250833.1\|5040409_5040826_+	hypothetical protein	NA	NA	NA	NA
WP_059250836.1\|5040815_5041043_+	hypothetical protein	NA	NA	NA	NA
WP_079081336.1\|5041704_5041989_+	hypothetical protein	NA	NA	NA	NA
WP_059255098.1\|5041985_5042390_-	hypothetical protein	NA	NA	NA	NA
WP_059250840.1\|5042558_5042963_+	hypothetical protein	NA	NA	NA	NA
WP_059250842.1\|5043305_5044268_-	hypothetical protein	NA	NA	NA	NA
WP_059250844.1\|5044424_5044640_+	hypothetical protein	NA	NA	NA	NA
WP_059250846.1\|5044670_5044928_-	XRE family transcriptional regulator	A0A142K654	Streptomyces_phage	8.6e-07	42.3
WP_059250848.1\|5045524_5047153_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_059250850.1\|5047479_5048763_-\|protease	M6 family metalloprotease domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_3

5410019 : 5443062

Streptomyces_phage(53.33%)

terminase,portal,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059251375.1\|5410019_5411837_+	recombinase family protein	Q38194	Streptomyces_phage	3.6e-99	39.0
WP_059255136.1\|5412817_5413171_+	HNH endonuclease	Q37834	Streptomyces_phage	1.5e-33	63.1
WP_059251377.1\|5413364_5413808_+\|terminase	phage terminase small subunit P27 family	Q37836	Streptomyces_phage	7.8e-56	76.2
WP_059251378.1\|5413822_5415379_+	hypothetical protein	Q9T214	Streptomyces_phage	7.8e-252	80.6
WP_059255137.1\|5415412_5416756_+\|portal	phage portal protein	K4HZ24	Streptomyces_virus	6.0e-176	73.4
WP_059251380.1\|5417427_5418612_+\|capsid	phage major capsid protein	K4I313	Streptomyces_virus	2.6e-130	62.7
WP_059251382.1\|5418680_5419046_+	hypothetical protein	Q9ZXB0	Streptomyces_phage	1.5e-49	77.0
WP_059251383.1\|5419055_5419490_+	hypothetical protein	Q859B9	Streptomyces_virus	1.0e-44	68.5
WP_059251385.1\|5419499_5420510_+	hypothetical protein	K4HZ27	Streptomyces_virus	9.0e-124	68.8
WP_059251387.1\|5420516_5420951_+	hypothetical protein	K4IBL8	Streptomyces_virus	2.4e-41	64.8
WP_059251389.1\|5420953_5421232_+	hypothetical protein	Q859B6	Streptomyces_virus	1.6e-19	60.4
WP_059251394.1\|5421249_5421432_+	hypothetical protein	Q9MCD3	Streptomyces_phage	5.2e-14	66.7
WP_063808571.1\|5421442_5423839_+	hypothetical protein	K4I0A0	Streptomyces_virus	2.0e-158	57.1
WP_059255139.1\|5423876_5424680_+	hypothetical protein	Q859B4	Streptomyces_virus	4.4e-73	53.1
WP_059255140.1\|5424679_5425747_+	hypothetical protein	Q9ZXA2	Streptomyces_phage	2.0e-89	54.0
WP_107118010.1\|5425907_5426555_+	hypothetical protein	Q859B1	Streptomyces_virus	3.3e-55	52.8
WP_059251398.1\|5426564_5426810_+	hypothetical protein	NA	NA	NA	NA
WP_059251403.1\|5429004_5429769_+	N-acetylmuramoyl-L-alanine amidase	A0A2H4PI36	Streptomyces_phage	1.6e-64	48.0
WP_059251405.1\|5429801_5430065_+	hypothetical protein	NA	NA	NA	NA
WP_059251407.1\|5430115_5430694_+	hypothetical protein	Q859A6	Streptomyces_virus	3.4e-43	52.1
WP_059251409.1\|5430926_5431769_+	hypothetical protein	Q38022	Streptomyces_phage	1.6e-105	67.0
WP_059251410.1\|5431938_5432643_+	hypothetical protein	A0A2H5BLT6	Streptomyces_phage	3.1e-54	48.6
WP_107118091.1\|5432651_5432834_+	hypothetical protein	D7NW76	Streptomyces_phage	4.4e-05	51.3
WP_059251412.1\|5432826_5433111_+	hypothetical protein	K4I0C0	Streptomyces_virus	3.0e-24	62.6
WP_079081077.1\|5433208_5433388_+	hypothetical protein	Q38026	Streptomyces_phage	5.2e-11	57.1
WP_059251413.1\|5433520_5433967_+	hypothetical protein	A0A2H5BLF2	Streptomyces_phage	1.1e-33	50.6
WP_059251414.1\|5434014_5436492_+	hypothetical protein	A0A2P1JT30	Streptomyces_phage	2.7e-307	62.9
WP_063808572.1\|5436520_5437447_+	DNA cytosine methyltransferase	G1DUR4	Mycobacterium_phage	7.9e-58	36.5
WP_059251417.1\|5437519_5439367_+	DNA polymerase	K4HYK3	Streptomyces_virus	1.3e-245	69.9
WP_059251419.1\|5439812_5440697_+	hypothetical protein	A0A2H5BLU6	Streptomyces_phage	2.0e-63	48.4
WP_059251421.1\|5440684_5441023_+	hypothetical protein	K4I345	Streptomyces_virus	3.8e-10	48.1
WP_059251423.1\|5441356_5441620_+	hypothetical protein	NA	NA	NA	NA
WP_059251425.1\|5441826_5443062_+	helix-turn-helix domain-containing protein	A0A291LH66	Streptomyces_phage	2.5e-144	65.0

DBSCAN-SWA_4

7329510 : 7337064

Thermobifida_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079081195.1\|7329510_7330431_+	hypothetical protein	A0A0R8VB90	Thermobifida_phage	1.7e-57	45.9
WP_079081196.1\|7330331_7330928_+	hypothetical protein	A0A291LBV6	Salmonella_phage	1.9e-12	46.2
WP_059253193.1\|7330924_7331731_+	hypothetical protein	A0A1B3B1U8	Gordonia_phage	3.4e-73	53.2
WP_059253195.1\|7331794_7332172_+	hypothetical protein	NA	NA	NA	NA
WP_059253196.1\|7332219_7333044_+	hypothetical protein	NA	NA	NA	NA
WP_059253198.1\|7333040_7333988_+	DNA cytosine methyltransferase	I4AZL4	Saccharomonospora_phage	1.2e-40	42.8
WP_059253201.1\|7334073_7335105_+	hypothetical protein	A0A0R8VA02	Thermobifida_phage	7.9e-43	41.3
WP_079081197.1\|7335079_7335706_+	hypothetical protein	NA	NA	NA	NA
WP_059253205.1\|7335702_7337064_+	replicative DNA helicase	C7BGG1	Burkholderia_phage	5.7e-49	34.1

DBSCAN-SWA_5

7356857 : 7366065

Streptomyces_phage(50.0%)

terminase,portal,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059253277.1\|7356857_7357931_+	hypothetical protein	A0A1J0GW76	Streptomyces_phage	2.2e-19	35.0
WP_059255297.1\|7357948_7358491_+	hypothetical protein	NA	NA	NA	NA
WP_059253279.1\|7358517_7358979_+	hypothetical protein	Q6VY58	Streptomyces_phage	1.0e-21	42.0
WP_079081199.1\|7358975_7359269_+	HNH endonuclease	A0A0B5A5U1	Mycobacterium_phage	3.0e-11	45.5
WP_059253282.1\|7359273_7359489_+	hypothetical protein	NA	NA	NA	NA
WP_079081200.1\|7359495_7359732_+	hypothetical protein	A0A0K0N6J6	Gordonia_phage	5.1e-14	55.6
WP_059253284.1\|7359783_7359969_+	hypothetical protein	G1BSE0	Mycobacterium_virus	5.4e-11	57.1
WP_059253286.1\|7360089_7360578_+	hypothetical protein	Q6VY56	Streptomyces_phage	4.3e-55	66.7
WP_059253288.1\|7360582_7362256_+\|terminase	terminase	A0A0K1Y5V8	Streptomyces_phage	7.8e-189	59.4
WP_059253290.1\|7362252_7363689_+\|portal	phage portal protein	A0A2H4JAT8	uncultured_Caudovirales_phage	3.5e-73	41.4
WP_059253292.1\|7363660_7364434_+	hypothetical protein	A0A2H5BLE7	Streptomyces_phage	1.7e-10	32.7
WP_059253296.1\|7365105_7366065_+\|capsid	phage major capsid protein	V5R986	Arthrobacter_phage	5.7e-35	33.8

DBSCAN-SWA_6

7370200 : 7380692

Streptomyces_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059253308.1\|7370200_7374343_+	hypothetical protein	A0A2H5BLS1	Streptomyces_phage	1.9e-87	47.9
WP_059253310.1\|7374355_7376590_+	hypothetical protein	Q6VY41	Streptomyces_phage	2.0e-184	48.6
WP_059253312.1\|7376593_7377682_+	DUF5047 domain-containing protein	Q6VY40	Streptomyces_phage	2.2e-107	56.5
WP_059253315.1\|7377678_7378338_+	hypothetical protein	NA	NA	NA	NA
WP_059253316.1\|7378349_7378961_+	hypothetical protein	A0A2H5BLW8	Streptomyces_phage	3.3e-65	60.1
WP_059253318.1\|7379026_7379944_+	N-acetylmuramoyl-L-alanine amidase	A0A1J0MCN5	Streptomyces_phage	8.8e-110	62.1
WP_059253321.1\|7379968_7380334_+	hypothetical protein	NA	NA	NA	NA
WP_059253323.1\|7380371_7380692_+	hypothetical protein	A0A1B3AZV0	Gordonia_phage	7.7e-05	49.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_LN997843

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_LN997843_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN997843_1

138360-138443

Orphan

Consensus_repeat	Method
GAGCGACCCCCGCGGGCGCGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN997843_1

>merge|NZ_LN997843|1|138360-138443|CRISPRCasFinder
GAGCGACCCCCGCGGGCGCGGGGACGACCAGCAGCTTTGTGCCGTACGTCATGGTCACGAAGAGCGACCCCCGCGGGCGCGGGG

>NZ_LN997843|1|1|138360-138443|CRISPRCasFinder
GAGCGACCCCCGCGGGCGCGGGG	ACGACCAGCAGCTTTGTGCCGTACGTCATGGTCACGAA
GAGCGACCCCCGCGGGCGCGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN997843.1\|WP_059255568.1\|141031_141649_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997843.1\|WP_059255576.1\|147362_148043_+\|adenosylcobinamide-amidohydrolase	unknown	unknown	gnl\|CDD\|376682
NZ_LN997843.1\|WP_059255570.1\|141638_142052_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997843.1\|WP_059255545.1\|129458_129854_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997843.1\|WP_059255547.1\|130125_131118_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|236612
NZ_LN997843.1\|WP_059255566.1\|139492_140791_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_LN997843.1\|WP_059255555.1\|134713_135007_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997843.1\|WP_059255578.1\|148344_148770_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NZ_LN997843.1\|WP_059255548.1\|131616_132123_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997843.1\|WP_059255561.1\|138634_138913_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997843.1\|WP_079081388.1\|133424_134027_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|312032
NZ_LN997843.1\|WP_079081390.1\|145933_147130_+\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	unknown	unknown	gnl\|CDD\|176894
NZ_LN997843.1\|WP_079081389.1\|137248_138250_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997843.1\|WP_059255572.1\|142054_142249_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997843.1\|WP_059256415.1\|144998_145640_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_LN997843.1\|WP_059255563.1\|139166_139496_+\|divalent-cation-tolerance-protein-CutA	unknown	unknown	gnl\|CDD\|376987
NZ_LN997843.1\|WP_059255543.1\|128667_129399_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270352
NZ_LN997843.1\|WP_059255541.1\|127290_128529_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380079
NZ_LN997843.1\|WP_059255550.1\|132450_132873_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN997843.1\|WP_079081441.1\|126132_126978_-\|endonuclease	unknown	unknown	gnl\|CDD\|197318

Protein	Function_ID	Function_description	E-value
NZ_LN997843.1\|WP_059256415.1\|144998_145640_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	7.14168e-34
NZ_LN997843.1\|WP_079081388.1\|133424_134027_+\|hypothetical-protein	gnl\|CDD\|312032	pfam08386, Abhydrolase_4, TAP-like protein. This is a family of putative bacterial peptidases and hydrolases that bear similarity to a tripeptidyl aminopeptidase isolated from Streptomyces lividans. A member of this family is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterized from Propionibacterium freudenreichii.	5.41544e-07
NZ_LN997843.1\|WP_059255576.1\|147362_148043_+\|adenosylcobinamide-amidohydrolase	gnl\|CDD\|376682	pfam01955, CbiZ, Adenosylcobinamide amidohydrolase. This prokaryotic protein family includes CbiZ which converts adenosylcobinamide (AdoCbi) to adenosylcobyric acid (AdoCby), an intermediate of the de novo coenzyme B12 biosynthetic route.	1.2021e-56
NZ_LN997843.1\|WP_079081390.1\|145933_147130_+\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	gnl\|CDD\|176894	cd08885, RHO_alpha_C_1, C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-terminal domain which binds the non-heme Fe(II). The Fe(II) is co-ordinated by conserved His and Asp residues. This group contains two putative Parvibaculum lavamentivorans (T) DS-1 oxygenases; this organism catabolizes commercial linear alkylbenzenesulfonate surfactant (LAS) and other surfactants, by a pathway involving an undefined 'omega-oxygenation' and beta-oxidation of the LAS side chain. The nature of the LAS-oxygenase is unknown but is likely a multicomponent system. This subfamily belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket.	1.55792e-52
NZ_LN997843.1\|WP_079081441.1\|126132_126978_-\|endonuclease	gnl\|CDD\|197318	cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2. This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds; their substrates range from nucleic acids to phospholipids and perhaps, proteins.	1.38848e-15
NZ_LN997843.1\|WP_059255578.1\|148344_148770_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	7.1945e-27
NZ_LN997843.1\|WP_059255547.1\|130125_131118_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|236612	PRK09685, PRK09685, DNA-binding transcriptional activator FeaR; Provisional.	8.3089e-30
NZ_LN997843.1\|WP_059255566.1\|139492_140791_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.00262002
NZ_LN997843.1\|WP_059255563.1\|139166_139496_+\|divalent-cation-tolerance-protein-CutA	gnl\|CDD\|376987	pfam03091, CutA1, CutA1 divalent ion tolerance protein. Several gene loci with a possible involvement in cellular tolerance to copper have been identified. One such locus in eubacteria and archaebacteria, cutA, is thought to be involved in cellular tolerance to a wide variety of divalent cations other than copper. The cutA locus consists of two operons, of one and two genes. The CutA1 protein is a cytoplasmic protein, encoded by the single-gene operon and has been linked to divalent cation tolerance. It has no recognized structural motifs. This family also contains putative proteins from eukaryotes (human and Drosophila).	4.88869e-31
NZ_LN997843.1\|WP_059255541.1\|127290_128529_+\|hypothetical-protein	gnl\|CDD\|380079	pfam17964, Big_10, Bacterial Ig domain. This entry represents a bacterial Ig-like domain found associated with transpeptidase domains.	7.45252e-59
NZ_LN997843.1\|WP_059255543.1\|128667_129399_-\|hypothetical-protein	gnl\|CDD\|270352	cd13634, PBP2_Sco4506, The conserved hypothetical protein SCO4506 exhibits the type 2 periplasmic-binidng protein fold. This group includes the SCO4506 protein from Streptomyces coelicolor and related hypothetical proteins. SCO4506 is an ortholog of Ttha1568 (MqnD) from Thermus thermophilies HB8. MqnD is an enzyme within an alternative menaquinone biosynthetic pathway that catalyzes the conversion of cyclic de-hypoxanthine futalosine to 1,4-dihydroxy-6-naphthoate. Menaquinone (MK; vitamin K) is an essential lipid-soluble carrier that shuttles electrons between membrane-bound protein complexes in the electron transport chain. SCO4506 has significant structural homology with the members of type 2 periplasmic-binding fold protein superfamily. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0.0034378

>NZ_LN997843.1|WP_079081389.1|137248_138250_-|hypothetical-protein
MFSDLAGTASGDHEAARARVREDGPLRGEQQEKTPSIGKKSSRGPVAGASLRGLDGAGQGRQQRGRVLLPPEDLRAVLAPVDLVRARLERPAARRLVEAAARSELTRVEGFAGRTDAPQVLADRLARRLSEQLRTGGPINDPVGWLLGRGLPQRQQCGDTRCDDRVLLDSGRDCPRCEDRQVDRRAQRSAVAAALEAAMPRATEAERRAEADRQLHERVTAQAWARELEWEQVRAGEGAAAQARAEAAAAQVAAPAEPVAPVVVPAPRPAAVTVLKGVAERRSRQDPATHGKVNCPIVRRFPPYWRRLRSPFCKIGLPSATPFRACLFHGLVS
>NZ_LN997843.1|WP_059255555.1|134713_135007_+|hypothetical-protein
MRTIGAWRVPQDHTFRNRANAFIEKYDGIRTCADIPGVKVSYTRAEADGDPLSFPAYTRKATNEPGEDLYTCENVSTYSVTTPAPGSYTVKSRVSAK
>NZ_LN997843.1|WP_079081388.1|133424_134027_+|hypothetical-protein
MGRHRRHPAGLRPPGLHGGRLGEHLHQLGRVRGPVPAGSRPSVAGPAAGARRARRRPGALADLRGLAHGDRDAPPGCRPVGDQQATGAHRVRQPHAPGPRGHVRGLARTRQQPPTALARARGATGADRQRAPRRVHPHAKAVSATAQLPGARLLTYRGAGHSVYVGLGGPCSRSAVERYLTTLRLPAPGTASPSVHPPQP
>NZ_LN997843.1|WP_059255550.1|132450_132873_+|hypothetical-protein
MLAAGLTATLAAIPTTSSAAQAETAATAASLFSAYTTNGAAYGDVGYTYWSTGDGYYGIEVTSPYAADIRPNDEYGAVLRMHYDSRSGTGQVRSLVKVLPEEYGTGSSFSGTGYRNVWFDVCNWHWLSEAAYSCARLTRS
>NZ_LN997843.1|WP_059255548.1|131616_132123_+|hypothetical-protein
MLSKSFRRATDSALGAFVVVSASMGTSAAATAPTSVQQAASSSGCTFFHPLADDFCVTVEGTGTTVYDIASELRGLADSTYLSDCFGGRIKIKLTAARKDGTPYSSTRTASCREDWFFDNMAYVTWAPATGIAFKADTQVCTRAGLANSSGAVTWYNGDLACVWIEAA
>NZ_LN997843.1|WP_059255547.1|130125_131118_+|helix-turn-helix-domain-containing-protein
MWLNVSNVDLPAREQFPFWAELVSRELAPLTLSSPNTGSFPAWASVLDLSSVRVAAFNSPPAHLKRTWADIRRADPGTYQLTFVSGTPLWINQRRQDSGLVCGDMVLFDLSHPFEGAVPDRGRHTQVVIMQVPREELPLPPDKVHRLLAQPLSTRSGMGAILARFLTTLDAYGPDCHPRDLSRLGAMALDLAGACLAQHLDAYDDLPAETRQQAMLARVNAFIDHNLGDPDLGPTDIAAHHHISVRSLHALFRQQGETVAASIRRRRLERCHADLTDPRMRQRPISAIAARWGFLRPADFSRAFRAAYGVTPRELRQAALRGLPMRNGLR
>NZ_LN997843.1|WP_059255545.1|129458_129854_-|hypothetical-protein
MDGTGARGSGVAVAHGAFNVVGGLWPLVHLRSFEWVFGPKTDDWLQMTTGGLLVSAGLAQLAAADPQSRAHARRIGLGTALTLLAVDLVYVPKGRIRPTYLLDAAMQTGWIAAWLRTPCPTGAGAAGSGER
>NZ_LN997843.1|WP_059255543.1|128667_129399_-|hypothetical-protein
MPRGKPAGPVRASGEPGQVGGVETVFRLLARLRRAPALHPDGLVCAAELEVPGGGERWGVPWLDRPGRYAATVRLSRAAGLPRRLPDGLGLAVRVDDADGPGRALDLLLTSSGRGRTTRHLPLPRADALAGPYSSLVPYRVSGRPRVLAAFPRRSHRAPVHGDPASLARALGAGPLVFDLCAEGPGRSWRVFAVLTVRTALPMGPKESTGFDIYAHDARQFTPGPALAAIRRAAYRGSRAGRP
>NZ_LN997843.1|WP_059255541.1|127290_128529_+|hypothetical-protein
MITLCRRHTRLVTAGVLGGALAVTALSGTSSAAADGNDAGNQPQAQARVGQAGDQEASDARIKITPGPGAYAVGIDDRVGVTVGNGKLTKVTMTAVATGAEVAGTLSADGTSWKSDVRLERATRYQITAEAEDAKGRSTTGNATITTVSPADDFTGHVSPQDGSTVGVGMPVTVTFDKAVSDRAAVRSEIEVSSSSGQRVAGHWFSDHRLDFRPENYWKPGSTVTVKLDRHGVRKTVTFKIGRSQISTVDARTKQMTVVRDGKTIKTIPVSSGSSEHPTYNGQMVISEKFRQIHMNGASVGLTEKDGKPSYDIKAVPHAMRLTDSGTFIHGNYWGKDSVFGKVNSSHGCIGLKDVRGGGDGKQPAAWFFDQSMTGDVVIVKNSDDKTKLAPDNGLSDWNMLWSEWVAGSPAA
>NZ_LN997843.1|WP_079081441.1|126132_126978_-|endonuclease
MVFGRGTRMLAAGLIVAFMGFIGPSAPSAALFARPLPAEAVEDVVPNRVMTWNICNPCGESNLDRAAEIATYAPQVIGLQEACVRDVERIRSHLERFYGLAYHVEYGTVLRDWGRCGGLPWNPGAFGQAILSAAPMTDPVSVEYPDGGSEDRGYLAVTTTVGGQSVRIFNTHLAQRRQEAVRAAQTRVLAADVARHDRAIALGDFNAVPAAPELAGMWELAADADPRCHPSSSGDCAPTTDWQSKFDYVFLRGIVPLGHRVQPTAYSDHHLLHADLDMNGA
>NZ_LN997843.1|WP_059255561.1|138634_138913_+|hypothetical-protein
MQKVADARDALETAFEQYQLAERDRRERVRQARPYQTVLPVLMRGRHGRCAWARWCYWPRRSGGAAWAPGRARPAWTAGPGQASAAGRTTVP
>NZ_LN997843.1|WP_059255563.1|139166_139496_+|divalent-cation-tolerance-protein-CutA
MTDYVQVSTATPTRDQAVELAKGAVQDRLAAGAQIIGPVSSVFWHLGEFGVGEEWRLLLSTNSERYPALEQFLLDRHPWDNPEVIATPITHGAERCLRWISESVSTPTS
>NZ_LN997843.1|WP_059255566.1|139492_140791_-|XRE-family-transcriptional-regulator
MTYQPPTALPRNLLEDEEFQRALADHDFGRVFRLARDRAGITYSRIAAECDIKPERVGTLARGKGRITSFGKIVQIADALRVPGHMVGLAPRPWEAEEGHGLVTPSIGPTLRRRTVLQAATSTGLAAALPALHRPKAPARITAGYVQQLRQRTARLRRLDEILGGGDTYRVYLAEYQATKRLLREASFTEQSRRRLQSLLAEQAQQAGWAAFDGGRHADATALYEESKDAAREAGDSDLLGNGFAFLAYQTADRNEAVEIAAASCATITPATPASVQALLHERMAWACAVANQPDLTERSLDAARAALAATPKGEPQPDWAVWVDPVELDIMTGRCWTELRRPLRAVPVLRRALAAYSDHNARDKALYLSWLASSYLTAGEVEEAARVTGRALDLASGVASVRPQQRIALVLNQLRAHESVAAVREVLQRAA
>NZ_LN997843.1|WP_059255568.1|141031_141649_+|hypothetical-protein
MTPDPHTVPTGAGWRPAVEQHEYAGHSEPRVVTRQEREAAVRSWLLLSAASASTSQTEWERDGIALLRCGALFSAVRMSAELVHAAAGSHEPGEVAGFLTAVLFGGPAFFDQHNARYYALVPASTAARKEWREKRHSPAADGLGLGLGSYVGVPRPGLNGPHDGHFSYWCVPMHGPGDLCDPEAVSQLVSHGRHRLTTQGAVRGR
>NZ_LN997843.1|WP_059255570.1|141638_142052_+|hypothetical-protein
MGAEGVEPGAEEAVKAECHRVLWDMRPFEPVESQALLSELEAHARALGPRVAALVPDLELEAGDLHGGALHILRQVDGVLSPSAPASDPQARLHDLAVTARALSGVILLADKRARERATRPADDGGPAGWLVAGLGV
>NZ_LN997843.1|WP_059255572.1|142054_142249_+|hypothetical-protein
MERYWTTGDCWLGCERTGVQVLWLGPIQWDGWTAPFMACAPCLDRLLAQARAHWLRRLRVTTAS
>NZ_LN997843.1|WP_059256415.1|144998_145640_-|histidine-phosphatase-family-protein
MRTLYVVTHPQATHHVEDVVGGWHDAQLTPAGIRAATAVARALRARIPEGAGVELYASDLRRTRQTADAVAELFGIAPVLDRRLREKSYGEAGGRPQEWLDRRFVPPSAVGERLDHDEGVEGAETKAAWVRRVYSAMDEILARPCEHQIIVTHGGSLTFVVTAWIKMPQETVGYASFRVPAGSITTLREDDFFHNRQVVGLGDSRHLDSAAAG
>NZ_LN997843.1|WP_079081390.1|145933_147130_+|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha
MPHRELASLLDELTRLASLPLERGETLPARAYSSEDFYRLEREHVFRADWLCAGHANQVARPGDYLRTEVLGEPVVVTRDEDGTLHALSRVCRHRFMDVLPPETTPEQGALKRLTCPYHAWTYRLNGEYAGQLAGAPLMGRVDFDRAACRLPRYRLEVWNGLLMICADPHAPALGRQLDGLTAKLAPYRLPDLVVAYTAAWEGVGANWKVALENGSENYHHMGSHAATLEPVLPGKDTVVDDCDGRWFTMYTPFAADSLRAAEGATGTVGTVIPGLGERELSGMTIAGVFPHLVMALLPDSVTFARWIPTGPATHDAHFTVLVPPEARAEPGFDAYVDASRHQLETIQNEDAVAIRGVQRGLATDPGPSGGRFSHLERPLWQFQRYLADRLAQRGRLP
>NZ_LN997843.1|WP_059255576.1|147362_148043_+|adenosylcobinamide-amidohydrolase
MTAVLPPPRPATGLLTVQQLARLEDGERLHSLLWRAGDGWRMISSAVLGGGVGERSWVLNTQVSHGYRRTDPDRHLAELALHADVRGEGVGLMTAADVQRYGHAVDGGVEAIATAGLGVRGWAASPQEDTAVAVAPGTINIVVALPVALTDAALVNAVATATEAKVQALLDAGYDCSGTPTDAVCVAARAPRADGEVHAFAGPRSLWGARLARAVHGAVRAACPPP
>NZ_LN997843.1|WP_059255578.1|148344_148770_-|Hsp20/alpha-crystallin-family-protein
MLARTGALGDLDRLVHQLARAATDPAAAVIPVDAWRDDDALYLQFDLPGMDRSNIELTTERGTLTLSAERPSPVPAGARAVLTERPTGRFTRRLALSDALDAAAAEAAYDNGVLTLRIPLAAHAKPRKIAISGGTPKQLTA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LN997843_1	1.1\|138383\|38\|NZ_LN997843\|CRISPRCasFinder	138383-138420	38	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	138383-138420	0	1.0

1. spacer 1.1|138383|38|NZ_LN997843|CRISPRCasFinder matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 0, identity: 1.0

acgaccagcagctttgtgccgtacgtcatggtcacgaa	CRISPR spacer
acgaccagcagctttgtgccgtacgtcatggtcacgaa	Protospacer
**************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LN997842

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_LN997843

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection