CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013832	Escherichia coli strain CD306 plasmid pCD306, complete sequence	0 crisprs	NA	0	0	1	0
NZ_CP013831	Escherichia coli strain CD306 chromosome, complete genome	2 crisprs	DinG,cas3,RT,DEDDh,c2c9_V-U4,csa3	0	1	11	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6000 : 72056

Escherichia_phage(30.77%)

integrase,transposase,protease

attL 20683:20697|attR 56249:56263

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000179844.1\|6000_7680_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_000344784.1\|7682_8543_+	TniB family NTP-binding protein	NA	NA	NA	NA
WP_000287615.1\|8593_10138_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.0e-38	34.6
WP_001324342.1\|10260_11784_+\|transposase	IS21-like element IS1326 family transposase	A0A2L1IVA1	Escherichia_phage	1.2e-15	24.2
WP_000983249.1\|11770_12556_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	3.3e-33	35.0
WP_000376623.1\|12731_13232_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000259031.1\|13359_14199_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|14192_14540_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000503573.1\|14745_15534_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5	NA	NA	NA	NA
WP_001389366.1\|15664_16138_-	trimethoprim-resistant dihydrofolate reductase DfrA17	A0A1B2IAU3	Erwinia_phage	1.3e-16	34.6
WP_001067855.1\|17145_17850_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_012372823.1\|18075_18891_+	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA
WP_000118029.1\|19237_21124_+	FTR1 family iron permease	NA	NA	NA	NA
20683:20697	attL	NA	NA	NA	NA
WP_000178050.1\|21164_21692_+	iron transporter	NA	NA	NA	NA
WP_000119836.1\|21795_23175_+	DUF2318 domain-containing protein	NA	NA	NA	NA
WP_000964653.1\|23177_24461_+	ABC transporter permease	NA	NA	NA	NA
WP_000729220.1\|24450_25581_+	ABC transporter permease	NA	NA	NA	NA
WP_000117262.1\|25585_26281_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.5e-29	38.9
WP_001267177.1\|26267_26753_+	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_000874189.1\|26777_27263_+	hypothetical protein	NA	NA	NA	NA
WP_001067834.1\|27972_28677_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.1e-139	99.6
WP_000476108.1\|30596_31907_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000950177.1\|31899_32973_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.6e-28	33.7
WP_000922702.1\|32978_33803_-	phosphodiesterase	NA	NA	NA	NA
WP_001271561.1\|33813_34701_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_000338039.1\|34690_35569_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_001077068.1\|36540_37431_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_000710783.1\|37455_37836_+	reactive intermediate/imine deaminase	NA	NA	NA	NA
WP_001022265.1\|37868_38834_+	2-keto-3-deoxygluconate transporter	NA	NA	NA	NA
WP_000562172.1\|38879_39632_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_001387467.1\|40236_40521_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_000421272.1\|40520_40796_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001105060.1\|40901_41195_+	hypothetical protein	NA	NA	NA	NA
WP_001072355.1\|41390_42560_-	hypothetical protein	NA	NA	NA	NA
WP_042344623.1\|43702_43885_+	hypothetical protein	NA	NA	NA	NA
WP_001066953.1\|44005_44746_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	2.0e-24	57.6
WP_000361611.1\|45030_46008_-	replication initiation protein	J9Q7H0	Salmonella_phage	4.6e-101	63.9
WP_000949004.1\|48989_49904_+	iron/manganese ABC transporter substrate-binding protein SitA	NA	NA	NA	NA
WP_000983710.1\|49903_50731_+	iron/manganese ABC transporter ATP-binding protein SitB	A0A1M7XV31	Cedratvirus	3.6e-14	27.0
WP_001101723.1\|50727_51585_+	iron/manganese ABC transporter permease subunit SitC	NA	NA	NA	NA
WP_000968139.1\|51581_52439_+	iron/manganese ABC transporter permease subunit SitD	NA	NA	NA	NA
WP_001318207.1\|53681_54062_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	1.9e-26	55.0
WP_000095526.1\|54441_55635_-	MFS transporter	NA	NA	NA	NA
WP_000602863.1\|55770_57495_+	aerobactin synthase IucA	NA	NA	NA	NA
56249:56263	attR	NA	NA	NA	NA
WP_001015721.1\|58441_60184_+	aerobactin synthase IucC	NA	NA	NA	NA
WP_000750130.1\|60180_61458_+	NADPH-dependent L-lysine N(6)-monooxygenase	NA	NA	NA	NA
WP_000973519.1\|61539_63741_+	ferric aerobactin receptor IutA	NA	NA	NA	NA
WP_001128474.1\|66076_67642_-	AAA family ATPase	NA	NA	NA	NA
WP_001034044.1\|67716_68133_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_001261286.1\|68129_68360_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001398199.1\|70718_71120_-	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_000557619.1\|71052_71310_-	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_000616807.1\|71402_72056_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013831

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013831_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013831_1

804683-804824

Orphan

Consensus_repeat	Method
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013831_1

>merge|NZ_CP013831|1|804683-804824|CRISPRCasFinder
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAGAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAAACAGCGCCGGATGCGGCGTGAATGCCTTATCCGGCCTACAAAAGAAATGCAG

>NZ_CP013831|1|1|804683-804824|CRISPRCasFinder
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	AAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAAACAGC
GCCGGATGCGGCGTGAATGCCTTATCCGGCCTACAAAAGAAATGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013831.1\|WP_000509910.1\|811263_811986_-\|mannosyl-D-glycerate-transport/metabolism-system-transcriptional-repressor-MngR	unknown	unknown	gnl\|CDD\|182065
NZ_CP013831.1\|WP_001531490.1\|812154_814071_+\|PTS-2-O-a-mannosyl-D-glycerate-transporter-subunit-IIABC	unknown	unknown	gnl\|CDD\|182066
NZ_CP013831.1\|WP_000648957.1\|814088_816722_+\|mannosylglycerate-hydrolase	unknown	unknown	gnl\|CDD\|182093
NZ_CP013831.1\|WP_000099866.1\|807813_809031_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
NZ_CP013831.1\|WP_059218004.1\|819655_821224_+\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|185052
NZ_CP013831.1\|WP_000399432.1\|795345_796542_+\|UxaA-family-hydrolase	unknown	unknown	gnl\|CDD\|377287
NZ_CP013831.1\|WP_000785832.1\|799415_800699_-\|citrate-(Si)-synthase	unknown	unknown	gnl\|CDD\|180164
NZ_CP013831.1\|WP_000254365.1\|801790_802138_+\|succinate-dehydrogenase-membrane-anchor-subunit	unknown	unknown	gnl\|CDD\|181901
NZ_CP013831.1\|WP_001048602.1\|809124_810291_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
NZ_CP013831.1\|WP_000568275.1\|821239_822379_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|184965
NZ_CP013831.1\|WP_000775540.1\|802137_803904_+\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|181594
NZ_CP013831.1\|WP_000025458.1\|810290_811160_+\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NZ_CP013831.1\|WP_000126143.1\|798058_799369_+\|TRAP-transporter-large-permease	unknown	unknown	gnl\|CDD\|224509
NZ_CP013831.1\|WP_001181475.1\|804997_807799_+\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499
NZ_CP013831.1\|WP_001235263.1\|803919_804636_+\|succinate-dehydrogenase-iron-sulfur-subunit-SdhB	unknown	unknown	gnl\|CDD\|235652
NZ_CP013831.1\|WP_000263355.1\|801392_801797_+\|succinate-dehydrogenase-cytochrome-b556-subunit	unknown	unknown	gnl\|CDD\|181900
NZ_CP013831.1\|WP_001305582.1\|800904_801012_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013831.1\|WP_000735581.1\|796569_797538_+\|C4-dicarboxylate-TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270387
NZ_CP013831.1\|WP_000725054.1\|816919_818113_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP013831.1\|WP_001237779.1\|797597_798059_+\|TRAP-transporter-small-permease	unknown	unknown	gnl\|CDD\|225632

Protein	Function_ID	Function_description	E-value
NZ_CP013831.1\|WP_000509910.1\|811263_811986_-\|mannosyl-D-glycerate-transport/metabolism-system-transcriptional-repressor-MngR	gnl\|CDD\|182065	PRK09764, PRK09764, GntR family transcriptional regulator.	1.54929e-163
NZ_CP013831.1\|WP_001531490.1\|812154_814071_+\|PTS-2-O-a-mannosyl-D-glycerate-transporter-subunit-IIABC	gnl\|CDD\|182066	PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional.	0
NZ_CP013831.1\|WP_000648957.1\|814088_816722_+\|mannosylglycerate-hydrolase	gnl\|CDD\|182093	PRK09819, PRK09819, mannosylglycerate hydrolase.	0
NZ_CP013831.1\|WP_000099866.1\|807813_809031_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
NZ_CP013831.1\|WP_059218004.1\|819655_821224_+\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|185052	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA.	0
NZ_CP013831.1\|WP_000399432.1\|795345_796542_+\|UxaA-family-hydrolase	gnl\|CDD\|377287	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus. Family members include the C termini of D-galactarate dehydratase (EC:4.2.1.42) which is thought to catalyze the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, and altronate hydrolase (altronic acid hydratase, EC:4.2.1.7), which catalyzes D-altronate = 2-keto-2-deoxygluconate + H2O. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core.	5.6924e-134
NZ_CP013831.1\|WP_000785832.1\|799415_800699_-\|citrate-(Si)-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NZ_CP013831.1\|WP_000254365.1\|801790_802138_+\|succinate-dehydrogenase-membrane-anchor-subunit	gnl\|CDD\|181901	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit.	5.54037e-58
NZ_CP013831.1\|WP_001048602.1\|809124_810291_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
NZ_CP013831.1\|WP_000568275.1\|821239_822379_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|184965	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II.	0
NZ_CP013831.1\|WP_000775540.1\|802137_803904_+\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|181594	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
NZ_CP013831.1\|WP_000025458.1\|810290_811160_+\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
NZ_CP013831.1\|WP_001181475.1\|804997_807799_+\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
NZ_CP013831.1\|WP_001235263.1\|803919_804636_+\|succinate-dehydrogenase-iron-sulfur-subunit-SdhB	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	3.48257e-167
NZ_CP013831.1\|WP_000263355.1\|801392_801797_+\|succinate-dehydrogenase-cytochrome-b556-subunit	gnl\|CDD\|181900	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit.	3.50714e-82
NZ_CP013831.1\|WP_000126143.1\|798058_799369_+\|TRAP-transporter-large-permease	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	2.11617e-118
NZ_CP013831.1\|WP_000735581.1\|796569_797538_+\|C4-dicarboxylate-TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270387	cd13669, PBP2_TRAP_TM0322_like, Periplasmic component of TRAP-type C4-dicarboxylate transport system TM0322 from Thermotoga maritima and similar proteins; the type 2 periplasmic binding protein fold. This subgroup includes the hyperthermophilic bacterium Thermotoga maritima TRAP-type C4-dicarboxylate transport system TM0322 and its closely related proteins. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.46494e-145
NZ_CP013831.1\|WP_000725054.1\|816919_818113_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.01578e-17
NZ_CP013831.1\|WP_001237779.1\|797597_798059_+\|TRAP-transporter-small-permease	gnl\|CDD\|225632	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism].	2.66483e-21

>NZ_CP013831.1|WP_001235263.1|803919_804636_+|succinate-dehydrogenase-iron-sulfur-subunit-SdhB
MRLEFSIYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
>NZ_CP013831.1|WP_000775540.1|802137_803904_+|succinate-dehydrogenase-flavoprotein-subunit
MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESMTRRSVNMEPKLRPAFPPKIRTY
>NZ_CP013831.1|WP_000254365.1|801790_802138_+|succinate-dehydrogenase-membrane-anchor-subunit
MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
>NZ_CP013831.1|WP_000263355.1|801392_801797_+|succinate-dehydrogenase-cytochrome-b556-subunit
MWALFMIRNVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLVW
>NZ_CP013831.1|WP_001305582.1|800904_801012_-|hypothetical-protein
MRKSYEVGISPKINLCNSVEVLTNSFGTVISGRQV
>NZ_CP013831.1|WP_000785832.1|799415_800699_-|citrate-(Si)-synthase
MADTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYAQRDFKSDIKK
>NZ_CP013831.1|WP_000126143.1|798058_799369_+|TRAP-transporter-large-permease
MTALSELLAGSWLDNWLMIIPLMFVCLFINMPVWLAMFCGILTYFLCYSNVPLMVAIQRLIATTQTPSLLAIPFFILLGTLMSYTGIAARILQIANVLIGRMRGGLGGANILVSTMMGGVSASNLADAAMLSRMMVPEMEQKGYSRGFAAAITASGSLITPIIPPGIALILYGLVADVSIGSMFMAGILPGLLCSAMLIVTVWLVAIRRGLKPSSEHWPKPKEVSVALVQAWPALFLIVAVIGGIRANIFTPTEAGAVAVLLVMFIGFVIYRELKISHVFTALSETARSTASVMLIIMASAALGWIFSLERAGITVAEFVTSLTDNKYVFLLIINLLLLVLGMFLEGSAILLILVPLLKPVVAHFGIDPVHFGIIMILNLSLGTLSPPVGTVMLLVCNTVQVSVGQFMREAVPLLISLILLLLVITYIPAISLLLV
>NZ_CP013831.1|WP_001237779.1|797597_798059_+|TRAP-transporter-small-permease
MRLLGKMIEVAAVLTLFILVIMTIAAVIMRYCFHMPLQWTEEVSGLLMIWVVMFGAVVAERDNTHLSIPFLADALTSRGQRILAFLVSLMSIILLVVMAWSAWKLAAGTAFKTTQILKISWFWIDIAVTVGAIGVACFTALQLIKKTPRKEGE
>NZ_CP013831.1|WP_000735581.1|796569_797538_+|C4-dicarboxylate-TRAP-transporter-substrate-binding-protein
MKKLLTPLLFLLALFSPMLNAAPVTIKIAYESNPGEPADTVVKHWAELVKKKSNGDIVFELYPSSQLGSKQDITEQALMGMNIITISDVGFLTDYDADLGILFGPYLTEDPQKLFAIYASDWFKQKEQKLREKGVHIVMSNYLYGTRQIIAKKPIRTPEDLKGMKIRVPNNVMQIKAIEAMGATPTPMPLGDVYPALTQGMIDGVENPVSVLYGQKLHEQAKYLSMVNYLTNTSLWLGGEAFFSTLTPAQLDIIHQTAYEAGLYSQKITTEQDATMLKTMQEQGVEIIYPDVAPFKEKALKVYQQFPEWTPGLYDTIQQQLK
>NZ_CP013831.1|WP_000399432.1|795345_796542_+|UxaA-family-hydrolase
MEGYVRQNGRPGIRNTVQVIFMVECASHVAKKIAEGFPCHDVQYFGFSGCYPSDYGYRLVKNLATHSNVGGVLIISLGCENFDRRRLEQEVRESGRPCHTLVIQENKGTTNTITLGKQLVAEMLEQLADTPRCILNWSDLVVGTICGGSDGTSGITGNPAVGRAFDQLLEKGATCIFEESGELLGCEQHMMSRAASSQARDAIEVAMTKAERYYSLMGLGSFSNGNAEGGLTTQEEKSLGAYTKSGDALIAGVILPTQQTPFPGLWLMDVVPDGEPRFGYPNINDSSEALELIASGCHMVLFTTGRGSVIGSVIAPIIKVCNNPQTWEHLSDDMDVNAGRVISEGATLDDIADDIMQVIEHVANGQYCAAERLEHQEFVLTYKAFDYSKSAVCRADPR
>NZ_CP013831.1|WP_001181475.1|804997_807799_+|2-oxoglutarate-dehydrogenase-E1-component
MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEALKQTYCGPIGAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAISEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGYMSVHQKQQQDLVNDALNVE
>NZ_CP013831.1|WP_000099866.1|807813_809031_+|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MSSVDILVPDLPESVADATVATWHKKPGDVVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQQASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKAPAKESAPAAAAPAAQPALAARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV
>NZ_CP013831.1|WP_001048602.1|809124_810291_+|ADP-forming-succinate--CoA-ligase-subunit-beta
MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEGK
>NZ_CP013831.1|WP_000025458.1|810290_811160_+|succinate--CoA-ligase-subunit-alpha
MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK
>NZ_CP013831.1|WP_000509910.1|811263_811986_-|mannosyl-D-glycerate-transport/metabolism-system-transcriptional-repressor-MngR
MGHKPLYRQIADRIREQITCGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILESIQGSGTYVKEERVNYDIFQLTSFDEKLSDRHVETHSEVLIFEVIPADNFLQQQLQISEQDRVWHVKRVRYRKQKPVALEETWMPLALFPDLTWQVMENSKYHFIEEVKKMVIDRSEQEIIPLMPTEEMSRLLNISQTKPILEKVSRGYLVDGQVFEYSRNAFNTDDYKFTLIAQRKSPR
>NZ_CP013831.1|WP_001531490.1|812154_814071_+|PTS-2-O-a-mannosyl-D-glycerate-transporter-subunit-IIABC
MNLTTLTHRDALCLNVRFTSREEAIHALTQRLAALGKISSTEQFLEEVYCRESLGPTALGEGLAVPHGKTAAVKEAAFAVATLSEPLQWEGVDGPEAVDLVVLLAIPPNEAGTTHMKLLTALTTRLADDELRARIQSATTPDELLSALDDKGDAQHTASFSYAPTIVCVTACPAGIAHTYMAAEYLEKAGRKLGVNIYVEKQGANGIEERLTAEQLNSATACIFAAEVAIKESERFNGIPALSVPVAEPIRHAEALIQQALTLKRSDETRTVQQDTQPVKSVKTELKQALLSGISFAVPLIVAGGTVLAVAVLLSQIFGLQDLFNEENSWLWMYRKLGGGMLGILMVPVLAAYTAYSLADKPALAPGFAAGLAANMIGSGFLGAVVGGLIAGYLMRWVKNHLRLSSKFNGFLTFYLYPVLGTLGAGSLMLFVVGEPVAWINNSLTAWLNGLSGNNALLLGAILGFMCSFDLGGPVNKAAYAFCLGAMANGVYGPYAIFASVKMVSAFTVTASTMLAPRLFKEFEIETGKSTWLLGLAGITEGAIPMAIEDPLRVIGSFVLGSMVTGAIVGAMNIGLSTPGAGIFSLFLLHDNGAGGVMAAIGWFGAALVGAAISTAILLIWRHHAVKHGNYLTDGVMP
>NZ_CP013831.1|WP_000648957.1|814088_816722_+|mannosylglycerate-hydrolase
MKAVSRVHITPHMHWDREWYFTTEESRILLVNNMEEILCRLEQDNEYKYYVLDGQTAILEDYFAVKPENKDRVKKLVEGGKLIIGPWYTQTDTTIVSAESIVRNLMYGMRDCLAFGEPMKIGYLPDSFGMSGQLPHIYNGFGITRTMFWRGCSERHGTDKTEFLWQSSDGSEVTAQVLPLGYAIGKYLPADENGLRKRLDSYFDVLEKASVTKEILLPNGHDQMPLQQNIFEVMEKLREIYPQRKFVMSRFEEVFEQIEAQRESLAILKGEFIDGKYMRVHRTIGSTRMDIKIAHARIENKIVNLLEPLATLAWTLGFDYHHGLLEKMWKEILKNHAHDSIGCCCSDKVHREIVARFELAEDMADNLIRFYMRKIADNMPQSDADKLVLFNLMPWPREEVINTTVRLRGSQFNLRDGRGQPVPYFIRHAREIDPGLIDRQIVHYGNYDPFMEFDIQISQIVPSMGYRTLYIEANQLGNVVTPKSKTEGILENAFWQIALNEDGSLRLVDKDSGVRYDRVFQIEEGSDDGDEYDYSPAKEEWAITSANAKPQYDIIHEAWQSRAIIRYEIAVPRNLSERRAKQCSGRVGVETVITLSHNSRRIDADINLDNQADDHRIRVLIPTPFNTDVVLADTQFGSLTRPVKDCAMNVWQQEGWKEAPVPVWNMLNYAVLQEGRNGIAVFSEGLREFEVIGEENKTFAITLLRGVGLLGKEDLLLRPGRPSGIKMPVSDSQLRGSFSCRLSLFSYIGTPVTAGVAQQARAWLTPVQCYNKIPWDAMKLNKAKFNVPESYSLLKMPPVGCLISALKKAEDRQELILRLFNPAELTSCDATVAFSRKVMTCTETMMNERFNTEKNEVLKELALFLPGQSRTFSYRIV
>NZ_CP013831.1|WP_000725054.1|816919_818113_+|tetratricopeptide-repeat-protein
MKKIVLPVALALLGMNAGAYAADVSIDILSATVKDKRIEGASVTLQRNGAQSVSGITNTSGSISLGTSFADNKDALLIVKKEGYSNLVVKCPCAGMTYAISPVMTNLDGMRVVLSWGEKPFDLDSHLIFPGGHIYFDSKEGTDANLDVDDTDSYGPETVTISKKHFGESYIYAVQDYSNKGLPNSNYLSASKAKVFVYVGSSLVRSYSVPAGKRGNIWTVFKLNPNGEFEDINSVTSANFNGTTLDVRDLATVIMPATDSSAPASPAMQNSGDTQLARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGVNAATTRANSYYNIAKIYETSGQNAEALQHYQLAYTEKNKPSYEEAIARVKTKM
>NZ_CP013831.1|WP_059218004.1|819655_821224_+|cytochrome-ubiquinol-oxidase-subunit-I
MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPGVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQPAR
>NZ_CP013831.1|WP_000568275.1|821239_822379_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY

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Crispr_ID: NZ_CP013831_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013831_2

970890-970972

Orphan

I-F

Consensus_repeat	Method
AGTTCACTGCCGTACAGGCAGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013831_2

>merge|NZ_CP013831|2|970890-970972|CRISPRCasFinder
AGTTCACTGCCGTACAGGCAGCTTAGAAATTGCCGCGGATCCTGTCTGCCAATAATGACAAGTTCACTGCCGTACAGGCAGAT

>NZ_CP013831|2|2|970890-970972|CRISPRCasFinder
AGTTCACTGCCGTACAGGCAGCT	TAGAAATTGCCGCGGATCCTGTCTGCCAATAATGACA
AGTTCACTGCCGTACAGGCAGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013831.1\|WP_001295343.1\|982624_983236_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP013831.1\|WP_000934041.1\|968401_970678_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP013831.1\|WP_000520781.1\|968050_968371_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP013831.1\|WP_000410785.1\|967503_967728_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP013831.1\|WP_000458841.1\|957380_959033_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP013831.1\|WP_000886683.1\|984680_985973_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP013831.1\|WP_000188152.1\|965484_967431_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP013831.1\|WP_001351020.1\|963265_964222_-\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP013831.1\|WP_000228473.1\|977730_978225_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP013831.1\|WP_001202204.1\|972610_974332_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP013831.1\|WP_001040187.1\|971361_971580_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP013831.1\|WP_000491137.1\|959176_960076_-\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP013831.1\|WP_000746478.1\|964372_965488_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP013831.1\|WP_001385255.1\|976221_977187_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP013831.1\|WP_000599803.1\|961610_963269_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP013831.1\|WP_000077041.1\|978359_982466_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP013831.1\|WP_001043561.1\|974332_976099_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP013831.1\|WP_001241674.1\|971864_972569_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP013831.1\|WP_000067797.1\|983246_984590_+\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355
NZ_CP013831.1\|WP_000488716.1\|960490_961186_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453

Protein	Function_ID	Function_description	E-value
NZ_CP013831.1\|WP_001295343.1\|982624_983236_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP013831.1\|WP_000934041.1\|968401_970678_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP013831.1\|WP_000520781.1\|968050_968371_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP013831.1\|WP_000410785.1\|967503_967728_-\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP013831.1\|WP_000458841.1\|957380_959033_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP013831.1\|WP_000886683.1\|984680_985973_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP013831.1\|WP_000188152.1\|965484_967431_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP013831.1\|WP_001351020.1\|963265_964222_-\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	3.43529e-131
NZ_CP013831.1\|WP_000228473.1\|977730_978225_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP013831.1\|WP_001202204.1\|972610_974332_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP013831.1\|WP_001040187.1\|971361_971580_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP013831.1\|WP_000491137.1\|959176_960076_-\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	3.40497e-117
NZ_CP013831.1\|WP_000746478.1\|964372_965488_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP013831.1\|WP_001385255.1\|976221_977187_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP013831.1\|WP_000599803.1\|961610_963269_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP013831.1\|WP_000077041.1\|978359_982466_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP013831.1\|WP_001043561.1\|974332_976099_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP013831.1\|WP_001241674.1\|971864_972569_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.92039e-139
NZ_CP013831.1\|WP_000067797.1\|983246_984590_+\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP013831.1\|WP_000488716.1\|960490_961186_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	7.82992e-144

>NZ_CP013831.1|WP_000934041.1|968401_970678_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP013831.1|WP_000520781.1|968050_968371_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP013831.1|WP_000410785.1|967503_967728_-|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP013831.1|WP_000188152.1|965484_967431_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLEWKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNATGGTEPVVNTASGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP013831.1|WP_000746478.1|964372_965488_+|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIAMVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKINDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP013831.1|WP_001351020.1|963265_964222_-|DUF535-domain-containing-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFCS
>NZ_CP013831.1|WP_000599803.1|961610_963269_+|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENIPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP013831.1|WP_000488716.1|960490_961186_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRN
>NZ_CP013831.1|WP_000491137.1|959176_960076_-|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQKAALRVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSTTVILLCNIAALMWLERGLPWSNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP013831.1|WP_000458841.1|957380_959033_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIATLQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIIGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA
>NZ_CP013831.1|WP_001040187.1|971361_971580_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP013831.1|WP_001241674.1|971864_972569_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCDEFIRHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLSNNFWVPRCLFSPQE
>NZ_CP013831.1|WP_001202204.1|972610_974332_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPKVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGIYLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMCEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP013831.1|WP_001043561.1|974332_976099_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLFLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP013831.1|WP_001385255.1|976221_977187_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNTDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP013831.1|WP_000228473.1|977730_978225_+|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP013831.1|WP_000077041.1|978359_982466_+|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQSTVAWQPVPGPQTGEPVIAPAPEGYPQQPQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAAEQPVQQPYYATAAEQPAQQPYYAPAPEQAVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPTRPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNTEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAQQPQYQQPQQPVTQQPQYQQPQQPVVPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP013831.1|WP_001295343.1|982624_983236_+|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP013831.1|WP_000067797.1|983246_984590_+|replication-associated-recombination-protein-RarA
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAVGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP013831.1|WP_000886683.1|984680_985973_+|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12111-12158	8	0.833
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	424237-424284	8	0.833
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7391-7438	10	0.792
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84215-84262	10	0.792
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87125-87172	10	0.792
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229237-229284	11	0.771
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229338-229385	11	0.771
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229439-229486	11	0.771
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239731-239778	11	0.771
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239832-239879	11	0.771
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239933-239980	11	0.771
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15006-15053	11	0.771
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230643-230690	11	0.771
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230744-230791	11	0.771
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230845-230892	11	0.771
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211613-211660	11	0.771
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211714-211761	11	0.771
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211815-211862	11	0.771
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31250-31297	11	0.771
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3371-3418	12	0.75
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4012-4059	12	0.75
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4113-4160	12	0.75
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208980-209027	12	0.75
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3370-3417	12	0.75
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4011-4058	12	0.75
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4112-4159	12	0.75
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219474-219521	12	0.75
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3370-3417	12	0.75
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4011-4058	12	0.75
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4112-4159	12	0.75
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210308-210355	12	0.75
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3370-3417	12	0.75
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4011-4058	12	0.75
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4112-4159	12	0.75
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191263-191310	12	0.75
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	270-317	12	0.75
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	101195-101242	12	0.75
NZ_CP013831_1	1.1\|804730\|48\|NZ_CP013831\|CRISPRCasFinder	804730-804777	48	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	158-205	13	0.729

1. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 8, identity: 0.833

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gactcgtaggcctgataagacgcgccagcgtcgcatcaggcaccgaac	Protospacer
.* .********************* ****************   *.*

2. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 8, identity: 0.833

aaaccgtaggcctgataagacgcgcaagcgtcg-catcaggcaaacagc	CRISPR spacer
aacctgtaggcctgataagacgcgcaagcgtcgccatcaggcatctca-	Protospacer
** *.**************************** *********  . .

3. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  ..****** ************* ****************  *.**

4. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  ..****** ************* ****************  *.**

5. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
attttgtaggcctgataagacgcggcagcgtcgcatcaggcatcgtgc	Protospacer
*  ..*******************  ****************    **

6. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

7. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

8. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

9. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

10. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

11. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

12. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctggt	Protospacer
.. .******* ************* ****************  ..*.

13. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

14. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

15. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

16. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

17. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

18. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

19. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
cggctgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
 ..*.*******************  ****************   * .

20. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

21. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

22. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

23. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

24. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

25. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

26. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

27. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

28. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

29. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

30. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

31. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

32. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

33. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

34. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

35. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

36. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggtttgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
.. ..*******************  ****************   * .

37. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
taatacaaggcctgataagacgcgccagcgtcgcatcaggcgctgaat	Protospacer
 **.   ****************** ***************.   *..

38. spacer 1.1|804730|48|NZ_CP013831|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gtctngtaggcctgataagacgcgtcagcgtcgcatcaggcttcaatt	Protospacer
.  . *******************. ***************    * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

484063 : 577825

101

Burkholderia_virus(31.48%)

transposase,plate,holin,tail,protease,capsid,integrase

attL 527891:527929|attR 584750:584788

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000130299.1\|484063_485338_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.9e-131	56.4
WP_001295325.1\|485525_487880_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.6e-224	52.4
WP_001043542.1\|488088_488361_+	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.1e-20	58.4
WP_000969359.1\|488552_490424_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_000680295.1\|490574_490946_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_001194552.1\|491075_491474_+	long-chain acyl-CoA thioesterase FadM	NA	NA	NA	NA
WP_000817227.1\|491525_492221_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.9e-88	68.0
WP_001238258.1\|492285_493986_-	SgrR family transcriptional regulator	NA	NA	NA	NA
WP_000113027.1\|494085_494904_+	HMP-PP phosphatase	NA	NA	NA	NA
WP_000884589.1\|495056_495515_+	DNA-binding transcriptional regulator DecR	NA	NA	NA	NA
WP_001235630.1\|495544_497317_+	SmdA family multidrug ABC transporter permease/ATP-binding protein	W8CYL7	Bacillus_phage	2.3e-50	29.5
WP_001256214.1\|497309_499091_+	SmdB family multidrug efflux ABC transporter permease/ATP-binding protein	W8CYL7	Bacillus_phage	3.4e-41	26.9
WP_000685051.1\|499638_500925_+	ammonium transporter AmtB	NA	NA	NA	NA
WP_001295832.1\|500973_501834_-	acyl-CoA thioesterase II	NA	NA	NA	NA
WP_000779831.1\|502051_502624_+	YbaY family lipoprotein	NA	NA	NA	NA
WP_000409908.1\|502654_502966_-	MGMT family protein	NA	NA	NA	NA
WP_000878135.1\|503344_503698_+	DUF1428 family protein	NA	NA	NA	NA
WP_001385227.1\|503739_505290_-	cyclic-guanylate-specific phosphodiesterase PdeB	NA	NA	NA	NA
WP_000136192.1\|505453_505924_-	YlaC family protein	NA	NA	NA	NA
WP_000102539.1\|506039_506591_-	maltose O-acetyltransferase	NA	NA	NA	NA
WP_001291435.1\|506764_506983_-	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_000344800.1\|507008_507383_-	Hha toxicity modulator TomB	NA	NA	NA	NA
WP_001132478.1\|507928_511078_-	multidrug efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	4.7e-54	23.9
WP_001295833.1\|511100_512294_-	multidrug efflux RND transporter periplasmic adaptor subunit AcrA	NA	NA	NA	NA
WP_000101737.1\|512435_513083_+	multidrug efflux transporter transcriptional repressor AcrR	NA	NA	NA	NA
WP_000177739.1\|513210_516573_+	mechanosensitive channel MscK	NA	NA	NA	NA
WP_000051144.1\|516611_516776_-	pleiotropic regulatory protein RsmS	NA	NA	NA	NA
WP_000844862.1\|516789_517317_-	primosomal replication protein N''	NA	NA	NA	NA
WP_001188900.1\|517386_517764_+	DUF454 family protein	NA	NA	NA	NA
WP_000127356.1\|517916_518468_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.7e-31	47.3
WP_000122044.1\|518596_520528_+	DNA polymerase III subunit gamma/tau	A0A1L2BWV7	Bacteriophage	3.9e-43	41.5
WP_000467098.1\|520580_520910_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_001195025.1\|520909_521515_+	recombination protein RecR	NA	NA	NA	NA
WP_000678189.1\|521624_523499_+	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.0e-117	37.8
WP_001220233.1\|523679_524324_+	adenylate kinase	NA	NA	NA	NA
WP_001250114.1\|524455_525418_+	ferrochelatase	NA	NA	NA	NA
WP_000801794.1\|525414_526374_-	acetyl esterase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	2.9e-15	25.0
WP_000671574.1\|526525_527830_+	inosine/guanosine kinase	NA	NA	NA	NA
527891:527929	attL	NA	NA	NA	NA
WP_000546254.1\|527959_529636_-	Kef family K(+) transporter	NA	NA	NA	NA
WP_001251634.1\|529874_531095_-	fosmidomycin MFS transporter	NA	NA	NA	NA
WP_000771748.1\|531312_532965_+	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
WP_000667000.1\|533002_533506_-	hypothetical protein	NA	NA	NA	NA
WP_000439798.1\|533502_534303_-	hypothetical protein	NA	NA	NA	NA
WP_000904922.1\|535826_536399_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	4.6e-85	85.2
WP_024189672.1\|536500_536974_+\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	2.1e-30	45.4
WP_059217998.1\|537014_537497_+\|tail	tail fiber protein	K7P7Q7	Enterobacteria_phage	1.1e-26	44.0
WP_001529037.1\|537496_538111_+\|tail	tail assembly chaperone	Q9MCR5	Enterobacteria_phage	1.7e-61	61.5
WP_077872211.1\|538117_540310_-\|tail	tail fiber protein	A0A0K2FIZ6	Escherichia_phage	1.9e-38	42.9
WP_000138756.1\|540312_540891_-\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	1.7e-66	66.8
WP_001529034.1\|540883_541987_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	1.4e-106	55.0
WP_000859116.1\|541977_542325_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	1.7e-34	61.5
WP_000148265.1\|542379_542976_-\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	5.4e-36	45.2
WP_001529032.1\|542972_544145_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	7.3e-85	47.1
WP_000478224.1\|544132_544345_-\|tail	tail protein X	Q6QIA3	Burkholderia_phage	1.2e-17	57.1
WP_000458387.1\|544344_545229_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	6.8e-51	47.9
WP_059217999.1\|545228_548441_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	7.6e-84	31.3
WP_001202894.1\|548516_548675_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000084213.1\|548598_548934_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000110114.1\|549031_549313_-	hypothetical protein	NA	NA	NA	NA
WP_162832341.1\|549315_549840_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.1e-67	66.7
WP_000729834.1\|549836_551264_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A4JWK5	Burkholderia_virus	4.5e-214	76.3
WP_000666499.1\|551253_551505_-	hypothetical protein	NA	NA	NA	NA
WP_001101804.1\|551504_551969_-	Gp37 family protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
WP_000271668.1\|551968_552415_-	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
WP_059218000.1\|552416_552755_-	DUF2190 family protein	NA	NA	NA	NA
WP_001286908.1\|552764_553718_-	hypothetical protein	A4JWK0	Burkholderia_virus	3.4e-64	43.8
WP_001511580.1\|553732_554848_-	hypothetical protein	A4JWJ9	Burkholderia_virus	7.2e-98	51.6
WP_000135514.1\|555062_555521_-	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	2.6e-30	44.8
WP_000117556.1\|555523_556345_-\|capsid	minor capsid protein	A4JWJ6	Burkholderia_virus	3.1e-98	61.5
WP_059218001.1\|556325_557822_-	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	4.4e-167	59.4
WP_000137893.1\|557821_559345_-	hypothetical protein	A4JWJ4	Burkholderia_virus	1.8e-184	62.5
WP_000533684.1\|559341_559884_-	DUF3486 family protein	A4JWJ3	Burkholderia_virus	4.9e-44	53.3
WP_000227704.1\|559886_560198_-	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	4.0e-30	60.6
WP_000175097.1\|560197_560524_-	membrane protein	Q6QIC4	Burkholderia_phage	9.6e-19	49.5
WP_001299256.1\|560520_561132_-	hypothetical protein	A0A0S4L1H0	Pseudomonas_phage	6.9e-10	34.2
WP_001104438.1\|561160_561898_-	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.9e-63	59.5
WP_000793145.1\|561900_562251_-\|holin	putative holin	A4JWP3	Burkholderia_virus	9.0e-23	53.9
WP_000194949.1\|562381_563125_+	hypothetical protein	NA	NA	NA	NA
WP_001573938.1\|563100_563502_-	hypothetical protein	NA	NA	NA	NA
WP_001069609.1\|563503_563719_+	hypothetical protein	NA	NA	NA	NA
WP_001573937.1\|563910_564675_+	DNA adenine methylase	A2I2Y7	Vibrio_virus	4.0e-100	64.4
WP_000579778.1\|564791_565130_-	helix-turn-helix domain-containing protein	F6MII3	Haemophilus_phage	4.8e-05	34.4
WP_000123378.1\|565230_565419_+	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	3.9e-17	71.0
WP_000047758.1\|565471_565780_+	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	3.5e-23	55.9
WP_000533819.1\|565790_566702_+	hypothetical protein	A4JWN3	Burkholderia_virus	2.0e-74	55.3
WP_059218002.1\|566705_568475_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	6.2e-229	68.3
WP_059218003.1\|568485_569652_+	AAA family ATPase	A4JWN1	Burkholderia_virus	1.3e-121	59.7
WP_000843446.1\|569654_569924_+	hypothetical protein	NA	NA	NA	NA
WP_001381528.1\|569951_570482_+	host-nuclease inhibitor Gam family protein	L7P7T1	Pseudomonas_phage	1.2e-58	66.7
WP_042203510.1\|570770_571043_+	hypothetical protein	NA	NA	NA	NA
WP_000197789.1\|571052_571358_+	hypothetical protein	NA	NA	NA	NA
WP_000131939.1\|571354_572038_+	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	4.5e-34	36.9
WP_000631814.1\|572034_572265_+	hypothetical protein	NA	NA	NA	NA
WP_000123379.1\|572254_572470_+	hypothetical protein	NA	NA	NA	NA
WP_001573929.1\|572462_572912_+	regulatory protein GemA	A4JWM5	Burkholderia_virus	1.6e-24	46.6
WP_001281696.1\|572883_573282_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	3.9e-30	55.9
WP_001571573.1\|573396_574029_+	hypothetical protein	NA	NA	NA	NA
WP_001571575.1\|574032_574194_-	hypothetical protein	NA	NA	NA	NA
WP_000057523.1\|574583_574886_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A222YWE2	Escherichia_phage	1.3e-41	80.0
WP_000806442.1\|574921_575263_+	HigA family addiction module antidote protein	A0A222YWD7	Escherichia_phage	3.2e-41	75.5
WP_000083947.1\|575320_577825_-	copper-exporting P-type ATPase CopA	A0A218MNH6	uncultured_virus	1.0e-115	38.4
584750:584788	attR	NA	NA	NA	NA

DBSCAN-SWA_2

968050 : 1037643

Enterobacteria_phage(65.57%)

terminase,tRNA,portal,plate,holin,head,tail,protease,capsid,integrase

attL 977557:977572|attR 1036121:1036136

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000520781.1\|968050_968371_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
WP_000934041.1\|968401_970678_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5
WP_001040187.1\|971361_971580_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_001241674.1\|971864_972569_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001202204.1\|972610_974332_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	1.4e-20	25.0
WP_001043561.1\|974332_976099_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	4.1e-23	24.3
WP_001385255.1\|976221_977187_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.9e-62	44.6
977557:977572	attL	NA	NA	NA	NA
WP_000228473.1\|977730_978225_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_000077041.1\|978359_982466_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
WP_001295343.1\|982624_983236_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_000067797.1\|983246_984590_+	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	2.1e-80	40.8
WP_000886683.1\|984680_985973_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
WP_000078916.1\|986278_986419_-	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	1.5e-18	97.8
WP_000488106.1\|986610_986871_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000132830.1\|986911_988021_-	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	1.3e-195	94.9
WP_000005447.1\|988178_989363_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	8.4e-222	97.5
WP_000290462.1\|989362_989875_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	1.5e-90	97.1
WP_000651577.1\|989930_990305_+\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	9.9e-36	71.5
WP_000333503.1\|990313_990469_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	9.7e-22	96.1
WP_000853410.1\|990455_993263_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	90.1
WP_000979945.1\|993275_993764_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.4e-85	99.4
WP_000905061.1\|993792_994392_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	3.8e-98	98.9
WP_021538277.1\|996393_998379_-\|tail	tail fiber protein	A0A0A7NV63	Enterobacteria_phage	3.2e-173	86.0
WP_000071703.1\|998381_998912_-\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	3.6e-92	98.2
WP_001111954.1\|998904_999801_-\|plate	baseplate J/gp47 family protein	A0A0A7NPY5	Enterobacteria_phage	3.3e-154	97.7
WP_001067543.1\|999804_1000134_-	GPW/gp25 family protein	A0A0A7NQ90	Enterobacteria_phage	8.4e-55	99.1
WP_001295912.1\|1000151_1000718_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	6.6e-100	98.4
WP_000356366.1\|1000729_1001365_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	4.1e-114	99.5
WP_000921127.1\|1001357_1001825_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	3.5e-83	95.5
WP_000202148.1\|1001848_1003726_-	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	2.7e-299	80.2
WP_000780577.1\|1003864_1004260_-	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	1.0e-59	93.3
WP_000072341.1\|1004256_1004649_-	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	1.9e-69	96.9
WP_001342221.1\|1004645_1004969_-\|holin	phage holin family protein	A0A0A7NRY9	Enterobacteria_phage	1.7e-47	93.5
WP_000864904.1\|1004916_1005171_-\|tail	tail protein X	A0A0A7NV57	Enterobacteria_phage	1.3e-31	100.0
WP_000063100.1\|1005170_1005665_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	1.9e-87	97.0
WP_000632309.1\|1005766_1006567_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	6.9e-127	89.1
WP_001055083.1\|1006612_1007665_-\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	1.4e-188	94.3
WP_001262655.1\|1007688_1008525_-\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	2.7e-150	99.6
WP_000613780.1\|1008679_1010431_+	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	0.0e+00	97.8
WP_000087814.1\|1010430_1011477_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	2.2e-202	99.7
WP_000236495.1\|1011491_1012016_-	hypothetical protein	NA	NA	NA	NA
WP_001068329.1\|1012739_1013237_+	DUF4760 domain-containing protein	NA	NA	NA	NA
WP_000193205.1\|1013276_1014119_+	hypothetical protein	NA	NA	NA	NA
WP_000211282.1\|1014202_1014517_-	plasmid partitioning/stability family protein	A0A0A7NPT5	Enterobacteria_phage	4.1e-19	52.3
WP_000686485.1\|1014521_1015481_-	plasmid segregation protein ParM	A0A0A7NPX4	Enterobacteria_phage	4.2e-179	99.1
WP_000123489.1\|1015557_1018380_-	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	98.4
WP_000599382.1\|1018386_1018752_-	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	1.7e-61	97.5
WP_023142408.1\|1018748_1019366_-	ash family protein	S5MQL6	Escherichia_phage	1.5e-09	42.0
WP_000104290.1\|1019377_1019677_-	hypothetical protein	A0A0A7NRX6	Enterobacteria_phage	2.4e-40	88.9
WP_000153700.1\|1019673_1019940_-	winged helix-turn-helix transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	2.0e-30	75.9
WP_000985157.1\|1019936_1020140_-	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	2.5e-25	83.6
WP_000543036.1\|1020163_1020574_-	hypothetical protein	NA	NA	NA	NA
WP_000021715.1\|1020667_1020781_-	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	1.8e-09	89.2
WP_000514277.1\|1020777_1021020_-	DUF4754 family protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
WP_000159455.1\|1021031_1021310_-	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	3.1e-34	79.3
WP_000776267.1\|1021320_1021671_-	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	8.1e-56	93.1
WP_001287828.1\|1021808_1022000_+	hypothetical protein	NA	NA	NA	NA
WP_000856387.1\|1022006_1022429_-	hypothetical protein	NA	NA	NA	NA
WP_001204236.1\|1022433_1022955_-	transcriptional regulator	NA	NA	NA	NA
WP_001368591.1\|1023059_1023401_+	helix-turn-helix transcriptional regulator	Q1JS45	Enterobacteria_phage	4.7e-16	51.2
WP_000850306.1\|1024761_1027206_+	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	6.6e-221	49.8
WP_000213098.1\|1027216_1027834_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	5.0e-77	60.6
WP_000534666.1\|1027835_1028699_+	dimethyl sulfoxide reductase anchor subunit DmsC	NA	NA	NA	NA
WP_000165876.1\|1028734_1029361_-	hydrolase	NA	NA	NA	NA
WP_000109283.1\|1029674_1030823_+	MFS transporter	NA	NA	NA	NA
WP_000067979.1\|1030919_1031717_-	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	1.3e-21	26.6
WP_000023390.1\|1031748_1032744_-\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	5.4e-190	100.0
WP_000072552.1\|1032837_1033149_-	helix-turn-helix transcriptional regulator	Q1JS25	Enterobacteria_phage	4.3e-53	100.0
WP_001576635.1\|1033253_1033610_+	hypothetical protein	A0A0F7LDH4	Escherichia_phage	2.0e-62	98.3
WP_164907187.1\|1033620_1033791_+	hypothetical protein	S4TNZ7	Salmonella_phage	1.3e-24	98.2
WP_000217677.1\|1033787_1034288_+	hypothetical protein	A0A0F7LBQ6	Escherichia_phage	4.5e-92	100.0
WP_001576637.1\|1034351_1034576_+	DUF2732 family protein	S4TP68	Salmonella_phage	5.2e-32	98.6
WP_001576638.1\|1034575_1034878_+	DUF5405 family protein	Q7Y4C1	Escherichia_virus	1.6e-44	96.0
WP_001576640.1\|1034877_1035102_+	TraR/DksA family transcriptional regulator	S4TRY6	Salmonella_phage	1.5e-34	97.3
WP_001576641.1\|1035098_1035374_+	DUF5405 family protein	U5N3W1	Enterobacteria_phage	1.9e-44	98.9
WP_001576643.1\|1035363_1037643_+	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	0.0e+00	97.9
1036121:1036136	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1040959 : 1114027

Burkholderia_virus(26.09%)

terminase,transposase,portal,lysis,plate,holin,head,tail,capsid,integrase

attL 1047477:1047493|attR 1110007:1110023

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001576649.1\|1040959_1041379_+	hypothetical protein	Q6K1E9	Salmonella_virus	5.7e-56	76.3
WP_001576650.1\|1041704_1042739_-\|portal	phage portal protein	M1SV64	Escherichia_phage	7.9e-200	98.8
WP_000156861.1\|1042738_1044511_-\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.8
WP_001085955.1\|1044684_1045539_+\|capsid	GPO family capsid scaffolding protein	Q94MH0	Enterobacteria_phage	5.2e-133	98.2
WP_001576652.1\|1045597_1046671_+\|capsid	phage major capsid protein, P2 family	Q94MI3	Enterobacteria_phage	2.2e-200	98.9
WP_001576654.1\|1046674_1047418_+\|terminase	terminase endonuclease subunit	Q858W5	Yersinia_virus	1.6e-125	98.8
1047477:1047493	attL	NA	NA	NA	NA
WP_000988633.1\|1047517_1048027_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
WP_000846399.1\|1048026_1048230_+\|tail	tail protein X	U5N3E7	Enterobacteria_phage	4.0e-31	100.0
WP_000123124.1\|1048233_1048515_+\|holin	phage holin family protein	A0A0F7LDF8	Escherichia_phage	3.7e-43	100.0
WP_001576656.1\|1048514_1049012_+	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	3.4e-92	99.4
WP_001576658.1\|1049026_1049452_+	hypothetical protein	U5N096	Enterobacteria_phage	1.0e-57	96.5
WP_001576659.1\|1049439_1049865_+\|lysis	LysB family phage lysis regulatory protein	U5N3W5	Enterobacteria_phage	1.5e-64	93.6
WP_000917151.1\|1049972_1050440_+\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	6.1e-83	100.0
WP_001001786.1\|1050432_1050885_+	phage virion morphogenesis protein	A0A0F7LDR6	Escherichia_phage	8.2e-77	100.0
WP_001576664.1\|1050951_1051587_+\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	1.2e-113	99.1
WP_000127163.1\|1051583_1051931_+	GPW/gp25 family protein	A0A0F7L9X3	Escherichia_phage	1.7e-58	100.0
WP_001121498.1\|1051935_1052844_+\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	1.7e-161	99.7
WP_001576666.1\|1052836_1053367_+\|tail	phage tail protein I	Q858V5	Yersinia_virus	2.3e-102	99.4
WP_001576667.1\|1053377_1056002_+\|tail	phage tail protein	Q858V4	Yersinia_virus	0.0e+00	95.7
WP_001298859.1\|1056261_1057803_+\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_001016257.1\|1057817_1058564_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_001576671.1\|1059617_1059995_-	hypothetical protein	NA	NA	NA	NA
WP_001576672.1\|1060435_1060912_+	hypothetical protein	NA	NA	NA	NA
WP_001576673.1\|1061223_1062414_+\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	3.1e-224	99.2
WP_001251408.1\|1062426_1062945_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_001031303.1\|1063001_1063277_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
WP_000785970.1\|1063309_1063429_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_000978911.1\|1065882_1066362_+\|tail	phage tail protein	Q7Y4C7	Escherichia_virus	3.3e-84	98.7
WP_001576679.1\|1066361_1067525_+	phage late control D family protein	Q7Y4C6	Escherichia_virus	5.9e-204	97.4
WP_000468308.1\|1067606_1067825_+	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_001292822.1\|1068144_1070427_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.0e-162	41.5
WP_001295917.1\|1070481_1071339_-	formate transporter FocA	NA	NA	NA	NA
WP_000194832.1\|1071744_1073505_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_000642852.1\|1073634_1074327_+	DUF421 domain-containing protein	NA	NA	NA	NA
WP_000057158.1\|1074525_1075614_+	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	2.7e-81	46.8
WP_000445240.1\|1075684_1076968_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_000904922.1\|1077223_1077796_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	4.6e-85	85.2
WP_063269479.1\|1077855_1078380_+\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	1.8e-35	48.6
WP_000072165.1\|1078379_1078994_+\|tail	tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	2.5e-60	60.5
WP_023142129.1\|1079000_1079462_-\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	3.9e-34	50.0
WP_023363137.1\|1079472_1080720_-\|tail	tail fiber protein	A0A0K2FIZ6	Escherichia_phage	2.0e-40	43.7
WP_000138756.1\|1080722_1081301_-\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	1.7e-66	66.8
WP_001219098.1\|1081293_1082397_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	1.4e-106	55.2
WP_000859111.1\|1082387_1082735_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	5.9e-35	62.4
WP_000148266.1\|1082789_1083386_-\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	3.2e-36	45.2
WP_000808007.1\|1083382_1084537_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	1.9e-85	47.6
WP_000478224.1\|1084524_1084737_-\|tail	tail protein X	Q6QIA3	Burkholderia_phage	1.2e-17	57.1
WP_000458387.1\|1084736_1085621_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	6.8e-51	47.9
WP_000016538.1\|1085620_1088572_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.8e-86	29.9
WP_001202894.1\|1088647_1088806_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000084213.1\|1088729_1089065_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000110114.1\|1089162_1089444_-	hypothetical protein	NA	NA	NA	NA
WP_162832341.1\|1089446_1089971_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.1e-67	66.7
WP_000729834.1\|1089967_1091395_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A4JWK5	Burkholderia_virus	4.5e-214	76.3
WP_000666499.1\|1091384_1091636_-	hypothetical protein	NA	NA	NA	NA
WP_001101804.1\|1091635_1092100_-	Gp37 family protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
WP_000271668.1\|1092099_1092546_-	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
WP_000537457.1\|1092547_1092886_-	DUF2190 family protein	NA	NA	NA	NA
WP_001286908.1\|1092895_1093849_-	hypothetical protein	A4JWK0	Burkholderia_virus	3.4e-64	43.8
WP_001273074.1\|1093863_1094979_-	hypothetical protein	A4JWJ9	Burkholderia_virus	9.4e-98	51.6
WP_000135514.1\|1095193_1095652_-	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	2.6e-30	44.8
WP_000117548.1\|1095654_1096476_-\|capsid	minor capsid protein	A4JWJ6	Burkholderia_virus	1.8e-98	61.9
WP_000090684.1\|1096456_1097953_-	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	9.7e-167	59.0
WP_169711462.1\|1097952_1099494_-	hypothetical protein	A4JWJ4	Burkholderia_virus	6.3e-185	62.8
WP_000124060.1\|1099544_1100090_-	DUF3486 family protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
WP_000227701.1\|1100089_1100401_-	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
WP_000175099.1\|1100400_1100727_-	hypothetical protein	Q6QIC4	Burkholderia_phage	1.1e-17	48.6
WP_000264665.1\|1100723_1101374_-	hypothetical protein	J9SVN7	Pseudomonas_phage	2.8e-09	32.9
WP_001104440.1\|1101357_1102098_-	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-62	51.4
WP_000793146.1\|1102100_1102451_-\|holin	putative holin	A4JWP3	Burkholderia_virus	1.5e-22	53.0
WP_000194951.1\|1102581_1103310_+	hypothetical protein	NA	NA	NA	NA
WP_001295927.1\|1103285_1103687_-	hypothetical protein	NA	NA	NA	NA
WP_001069611.1\|1103688_1103904_+	hypothetical protein	NA	NA	NA	NA
WP_000783854.1\|1104094_1104859_+	DNA adenine methylase	A2I2Y7	Vibrio_virus	5.2e-100	64.4
WP_000031013.1\|1104975_1105332_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000123378.1\|1105425_1105614_+	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	3.9e-17	71.0
WP_000047759.1\|1105666_1105975_+	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	2.7e-23	55.9
WP_000533817.1\|1105985_1106906_+	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	1.6e-74	56.2
WP_001095645.1\|1106905_1107223_+	hypothetical protein	NA	NA	NA	NA
WP_000186588.1\|1107238_1109008_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JWN2	Burkholderia_virus	1.5e-227	69.4
WP_000960679.1\|1109018_1110185_+	AAA family ATPase	A4JWN1	Burkholderia_virus	2.2e-121	59.4
1110007:1110023	attR	NA	NA	NA	NA
WP_000843446.1\|1110187_1110457_+	hypothetical protein	NA	NA	NA	NA
WP_001140136.1\|1110484_1111015_+	host-nuclease inhibitor Gam family protein	L7P7T1	Pseudomonas_phage	1.2e-58	66.7
WP_000632576.1\|1111303_1111576_+	hypothetical protein	NA	NA	NA	NA
WP_001295929.1\|1111585_1111882_+	hypothetical protein	NA	NA	NA	NA
WP_000763554.1\|1111896_1112112_+	hypothetical protein	NA	NA	NA	NA
WP_000132039.1\|1112108_1112792_+	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	1.1e-32	36.1
WP_000631813.1\|1112788_1113019_+	hypothetical protein	NA	NA	NA	NA
WP_000206212.1\|1113008_1113215_+	hypothetical protein	NA	NA	NA	NA
WP_001170114.1\|1113216_1113666_+	regulatory protein GemA	A4JWM5	Burkholderia_virus	6.1e-24	45.1
WP_001281701.1\|1113637_1114027_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	1.5e-31	54.2

DBSCAN-SWA_4

1329405 : 1375112

Enterobacteria_phage(55.1%)

terminase,tRNA,portal,tail,lysis,head,holin,capsid,integrase

attL 1327723:1327737|attR 1356317:1356331

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1327723:1327737	attL	NA	NA	NA	NA
WP_001295972.1\|1329405_1330512_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000476093.1\|1330565_1331027_-	phosphatase NudJ	NA	NA	NA	NA
WP_001248677.1\|1331036_1331690_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000444487.1\|1331861_1333112_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_000741335.1\|1333225_1334368_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	Q77Z02	Phage_21	3.6e-206	100.0
WP_000088653.1\|1334357_1334594_-	excisionase	NA	NA	NA	NA
WP_000490213.1\|1334733_1334973_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.7e-39	96.2
WP_000002139.1\|1334956_1335283_-	ASCH domain-containing protein	A5VWB6	Enterobacteria_phage	9.8e-48	95.7
WP_000763374.1\|1335282_1335504_-	TraR/DksA family transcriptional regulator	A0A1I9LJM6	Stx_converting_phage	2.3e-32	93.2
WP_021533932.1\|1335602_1335884_-	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	3.0e-45	95.7
WP_000548516.1\|1335894_1336086_-	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	1.8e-25	93.7
WP_000149537.1\|1336058_1336241_-	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	1.8e-27	98.3
WP_000186848.1\|1336237_1336918_-	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	1.6e-132	100.0
WP_000100847.1\|1336914_1337700_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000995418.1\|1337705_1338002_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	8.9e-48	98.0
WP_000233576.1\|1338077_1338284_-	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
WP_000858975.1\|1338879_1339569_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.8e-92	75.0
WP_001067458.1\|1339673_1339904_+	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_001182900.1\|1339973_1340513_+	toxin YdaT domain-containing protein	K7PJT7	Enterobacteria_phage	2.6e-61	67.0
WP_000147894.1\|1340509_1341529_+	replication protein	A0A0M5M7Y1	Salmonella_phage	8.8e-111	64.1
WP_000788794.1\|1341525_1342227_+	replication protein P of bacteriophage	M1FJ72	Enterobacteria_phage	1.5e-125	97.0
WP_022645049.1\|1342476_1346742_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA
WP_000700202.1\|1346778_1347822_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_072147164.1\|1348171_1348273_+	hypothetical protein	NA	NA	NA	NA
WP_001053005.1\|1348269_1348725_+	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	1.6e-59	66.9
WP_000224914.1\|1348724_1348895_+	hypothetical protein	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
WP_000774479.1\|1348887_1349178_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	2.3e-48	95.8
WP_001099488.1\|1349174_1349537_+	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	1.6e-59	95.7
WP_000971096.1\|1349533_1349674_+	YlcG family protein	K7PHH3	Enterobacteria_phage	8.5e-09	68.9
WP_001097224.1\|1349670_1350360_+	antiterminator Q	I6PDF8	Cronobacter_phage	4.9e-57	48.5
WP_000544528.1\|1350681_1350987_+\|holin	phage holin family protein	A0A286N2Q5	Klebsiella_phage	7.0e-40	87.6
WP_001180486.1\|1350973_1351450_+	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	7.3e-84	94.9
WP_001228695.1\|1351666_1351849_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_001298464.1\|1351939_1352233_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	7.0e-45	92.8
WP_000830178.1\|1352713_1353040_+	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_000881610.1\|1353246_1353429_+	hypothetical protein	NA	NA	NA	NA
WP_000453620.1\|1353992_1354538_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	6.8e-94	98.3
WP_001027261.1\|1354512_1356438_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.1
1356317:1356331	attR	NA	NA	NA	NA
WP_000198149.1\|1356434_1356641_+	gpW family protein	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001295977.1\|1356637_1358239_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.4e-309	98.9
WP_000123268.1\|1358219_1359539_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.1e-230	97.7
WP_001295978.1\|1359548_1359881_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
WP_000063293.1\|1359936_1360962_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	7.8e-192	99.4
WP_000158908.1\|1361003_1361402_+	DNA-packaging protein FI	A0A0K2FIR1	Enterobacteria_phage	1.0e-62	98.5
WP_000753018.1\|1361413_1361767_+\|head,tail	head-tail joining protein	A0A2R9YJJ5	Escherichia_phage	2.2e-61	98.3
WP_000985120.1\|1361777_1362356_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	92.7
WP_000683150.1\|1362352_1362748_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	2.9e-70	98.5
WP_001295979.1\|1362755_1363496_+\|tail	phage tail protein	A0A2I6TC77	Escherichia_phage	1.6e-130	98.0
WP_000479203.1\|1363511_1363934_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.2e-68	94.3
WP_000459457.1\|1363915_1364350_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000847375.1\|1366899_1367229_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	2.8e-58	99.1
WP_001152626.1\|1367228_1367927_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	5.1e-134	99.6
WP_023146277.1\|1367931_1368675_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.0e-148	97.2
WP_023149564.1\|1368611_1369214_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-88	85.6
WP_001531667.1\|1369274_1372757_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.3
WP_000290538.1\|1372815_1374837_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0E3M0V5	Enterobacteria_phage	7.2e-181	72.3
WP_000654172.1\|1374833_1375112_+	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	9.9e-25	55.4

DBSCAN-SWA_5

1513967 : 1583680

Escherichia_phage(23.21%)

terminase,transposase,portal,tail,head,holin,protease,capsid,integrase

attL 1510141:1510155|attR 1516051:1516065

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1510141:1510155	attL	NA	NA	NA	NA
WP_000113700.1\|1513967_1515098_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21940	Phage_21	3.4e-103	51.4
WP_000113189.1\|1515075_1515324_-	excisionase	NA	NA	NA	NA
WP_016230610.1\|1515388_1517860_-	exonuclease	A0A192Y6E0	Salmonella_phage	5.7e-55	56.0
1516051:1516065	attR	NA	NA	NA	NA
WP_001090200.1\|1517952_1518144_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449179.1\|1518140_1518329_-	hypothetical protein	NA	NA	NA	NA
WP_001171951.1\|1518894_1519113_-	hypothetical protein	NA	NA	NA	NA
WP_000379589.1\|1519272_1519428_-	DUF1391 family protein	M4QQ57	Salicola_phage	8.8e-07	51.1
WP_000103687.1\|1519700_1520417_-	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	1.7e-52	42.0
WP_000471549.1\|1520466_1520682_+	transcriptional regulator	NA	NA	NA	NA
WP_000693845.1\|1520678_1521104_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000095675.1\|1521126_1522089_+	helix-turn-helix domain-containing protein	S5FM81	Shigella_phage	1.4e-70	56.4
WP_000788950.1\|1522095_1522842_+	ATP-binding protein	A0A088CBP4	Shigella_phage	4.0e-113	83.8
WP_000450998.1\|1522863_1523634_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.6e-80	64.5
WP_001151161.1\|1523649_1524075_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.2e-63	94.0
WP_000150294.1\|1524249_1524915_+	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_000018429.1\|1525095_1525308_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	5.2e-26	90.0
WP_001329966.1\|1525475_1525748_+	hypothetical protein	I6PCV7	Cronobacter_phage	5.5e-12	49.2
WP_001265085.1\|1525749_1526805_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.0e-90	48.4
WP_000140014.1\|1526805_1527186_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.9e-35	64.5
WP_001513213.1\|1527182_1528004_+	antitermination protein	K7P7B9	Enterobacteria_phage	1.7e-80	60.1
WP_000917751.1\|1528230_1528428_+	hypothetical protein	Q9MC00	Enterobacteria_phage	6.1e-29	98.5
WP_000024331.1\|1528579_1529629_+	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	4.4e-198	95.4
WP_023142244.1\|1530430_1530562_+	DUF3927 family protein	H6WZJ7	Escherichia_phage	1.1e-05	100.0
WP_000871291.1\|1530842_1531178_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
WP_016230612.1\|1531438_1533292_+	SASA family carbohydrate esterase	Q08JA2	Stx2-converting_phage	0.0e+00	90.3
WP_000284510.1\|1533442_1533658_+\|holin	class II holin family protein	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_000193278.1\|1533662_1534007_+	YdfR family protein	K7PGU6	Enterobacteria_phage	2.8e-37	95.2
WP_000369850.1\|1533972_1534245_-	hypothetical protein	NA	NA	NA	NA
WP_000992071.1\|1534350_1534884_+	lysozyme	Q6H9V6	Enterobacteria_phage	4.8e-100	95.5
WP_032140280.1\|1535438_1535525_+	hypothetical protein	NA	NA	NA	NA
WP_012578895.1\|1535746_1535932_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	2.7e-18	98.4
WP_000736382.1\|1536017_1536233_+	hypothetical protein	NA	NA	NA	NA
WP_000095741.1\|1536431_1536632_-	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	4.3e-30	98.5
WP_000829185.1\|1536673_1537039_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	2.5e-60	93.4
WP_001296023.1\|1537887_1539549_+\|terminase	terminase large subunit	B6DZ98	Enterobacteria_phage	0.0e+00	98.7
WP_000173031.1\|1539612_1541550_+\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	100.0
WP_001063099.1\|1541594_1541816_+	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000267294.1\|1541761_1544347_+\|portal	phage portal protein	A0A0P0ZDD0	Stx2-converting_phage	0.0e+00	100.0
WP_000125990.1\|1544343_1544670_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_001007905.1\|1544679_1545030_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000573391.1\|1545026_1545473_+	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_000133388.1\|1545469_1545814_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_001275441.1\|1545880_1546597_+	immunoglobulin domain-containing protein	A0A0P0ZDV1	Stx2-converting_phage	3.6e-127	99.6
WP_000710949.1\|1546611_1546986_+\|tail	phage tail assembly chaperone	A0A0P0ZE84	Stx2-converting_phage	1.7e-64	99.2
WP_001513217.1\|1547081_1547291_+	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	100.0
WP_000212991.1\|1547338_1550581_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	91.6
WP_000807937.1\|1550573_1550915_+\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	9.0e-60	95.6
WP_001296027.1\|1550914_1551613_+\|tail	phage minor tail protein L	B6DZB1	Enterobacteria_phage	5.8e-130	97.4
WP_000194730.1\|1551623_1552367_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	4.3e-147	97.6
WP_061089814.1\|1552312_1552945_+\|tail	tail assembly protein	B6ETG3	Enterobacteria_phage	3.0e-101	97.6
WP_000514710.1\|1553287_1556761_+	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	89.7
WP_001298859.1\|1557401_1558943_+\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_001016257.1\|1558957_1559704_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_023363168.1\|1560165_1562991_+\|tail	prophage tail fiber N-terminal domain-containing protein	Q858V4	Yersinia_virus	9.0e-04	63.6
WP_000972097.1\|1562992_1563526_+\|tail	tail fiber assembly protein	A0A077SL44	Escherichia_phage	1.8e-67	70.1
WP_001164137.1\|1563556_1564084_-\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	8.4e-73	77.7
WP_001513292.1\|1564099_1565068_-	hypothetical protein	A0A0F7LDR4	Escherichia_phage	6.5e-47	38.8
WP_001421220.1\|1565193_1565376_+	recombinase family protein	A0A0C4UR34	Shigella_phage	1.4e-24	95.0
WP_000240999.1\|1565574_1566243_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000937495.1\|1566299_1566569_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	9.3e-20	79.4
WP_000251936.1\|1566683_1566854_+	hypothetical protein	A0A0U2RK60	Escherichia_phage	9.4e-10	62.5
WP_001348267.1\|1566980_1567538_-	Rha family transcriptional regulator	Q8H9L9	Vibrio_phage	4.2e-30	63.8
WP_001296031.1\|1567534_1567810_-	ash family protein	S5MQL6	Escherichia_phage	1.1e-10	52.9
WP_000443082.1\|1568185_1568992_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000209513.1\|1568991_1570185_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_001195273.1\|1570196_1571555_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	3.9e-37	41.2
WP_000763535.1\|1571558_1573154_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_001194644.1\|1573153_1574716_-	anthranilate synthase component I	NA	NA	NA	NA
WP_001700591.1\|1574807_1574852_-	trp operon leader peptide	NA	NA	NA	NA
WP_001285702.1\|1574989_1575871_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001295575.1\|1575867_1576488_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001296033.1\|1576515_1578411_+	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_001291206.1\|1578623_1579499_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_000622024.1\|1579668_1580691_+	hypothetical protein	NA	NA	NA	NA
WP_001000715.1\|1580700_1581009_+	hypothetical protein	NA	NA	NA	NA
WP_001278898.1\|1581065_1581656_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_000559273.1\|1581652_1582411_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	4.4e-06	23.4
WP_000422062.1\|1582630_1583680_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5

DBSCAN-SWA_6

2075622 : 2163869

103

Escherichia_phage(22.73%)

terminase,transposase,tRNA,portal,plate,holin,tail,capsid,integrase

attL 2121319:2121378|attR 2163931:2164055

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099156422.1\|2075622_2076971_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	8.7e-74	52.4
WP_000568520.1\|2077080_2078091_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	5.6e-09	25.5
WP_000580323.1\|2078099_2078711_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_072093883.1\|2078849_2078915_-	stress response small protein YobI	NA	NA	NA	NA
WP_001024911.1\|2078985_2079588_+	YebB family permuted papain-like enzyme	NA	NA	NA	NA
WP_001295503.1\|2079589_2080111_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.0e-10	35.1
WP_000907234.1\|2080145_2080886_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_077249130.1\|2080914_2081367_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_001258676.1\|2081359_2083132_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_000891625.1\|2083441_2084008_+	hydrolase	NA	NA	NA	NA
WP_000639277.1\|2084004_2084823_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	6.5e-72	99.2
WP_000252980.1\|2084875_2085271_+	MAPEG family protein	NA	NA	NA	NA
WP_000019588.1\|2085311_2086055_+	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.6e-24	30.0
WP_000564759.1\|2086051_2087023_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_000176764.1\|2087058_2089488_-	trimethylamine N-oxide reductase TorZ	NA	NA	NA	NA
WP_001214293.1\|2089512_2090613_-	NapC/NirT family cytochrome c	NA	NA	NA	NA
WP_001185734.1\|2091000_2091747_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001490174.1\|2091760_2092327_-	VOC family protein	NA	NA	NA	NA
WP_001025326.1\|2092542_2094276_+\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	8.8e-87	33.7
WP_001202076.1\|2094328_2094721_-	flagellar protein FlhE	NA	NA	NA	NA
WP_000066973.1\|2094720_2096799_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_001278946.1\|2096791_2097940_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_000983600.1\|2098128_2098773_-	protein phosphatase CheZ	NA	NA	NA	NA
WP_000763867.1\|2098783_2099173_-	chemotaxis response regulator CheY	A0A2K9L4R0	Tupanvirus	1.3e-06	32.0
WP_000036371.1\|2099187_2100237_-	protein-glutamate methylesterase/protein glutamine deamidase	Q56AR1	Bacillus_thuringiensis_phage	1.0e-05	32.8
WP_000204320.1\|2100239_2101100_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_001296146.1\|2101390_2103052_-	methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-10	40.3
WP_000147302.1\|2103196_2103700_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_001531763.1\|2103720_2105685_-	chemotaxis protein CheA	NA	NA	NA	NA
WP_000795641.1\|2105689_2106616_-	flagellar motor protein MotB	NA	NA	NA	NA
WP_000906342.1\|2106612_2107500_-	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_001291603.1\|2107626_2108205_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_001295647.1\|2108207_2108558_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_000122413.1\|2109337_2109766_+	universal stress protein UspC	NA	NA	NA	NA
WP_001296148.1\|2109772_2111197_-	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
WP_001296149.1\|2111171_2111972_-	trehalose-phosphatase	NA	NA	NA	NA
WP_000100203.1\|2112138_2113125_-	arabinose ABC transporter permease AraH	NA	NA	NA	NA
WP_001187827.1\|2113139_2114654_-	arabinose ABC transporter ATP binding protein AraG	A0A285PWH2	Cedratvirus	1.3e-12	29.7
WP_000548680.1\|2114723_2115713_-	arabinose ABC transporter substrate-binding protein AraF	NA	NA	NA	NA
WP_000179469.1\|2116507_2117011_+	non-heme ferritin-like protein	NA	NA	NA	NA
WP_000082127.1\|2117088_2117340_-	DUF2766 domain-containing protein	NA	NA	NA	NA
WP_010723106.1\|2117454_2117541_-	stress response protein AzuC	NA	NA	NA	NA
WP_001237881.1\|2117804_2118128_+	YecR-like lipofamily protein	NA	NA	NA	NA
WP_000917208.1\|2118299_2118797_+	non-heme ferritin	NA	NA	NA	NA
WP_000377224.1\|2118834_2119074_-	YecH family protein	NA	NA	NA	NA
WP_000797555.1\|2119264_2120476_+	tyrosine transporter TyrP	NA	NA	NA	NA
WP_000847882.1\|2120526_2121192_-	UPF0149 family protein YecA	NA	NA	NA	NA
2121319:2121378	attL	NA	NA	NA	NA
WP_001296152.1\|2121663_2122083_-	hypothetical protein	G8C7Q7	Escherichia_phage	1.8e-49	68.8
WP_001531767.1\|2123297_2123522_-\|tail	tail protein X	NA	NA	NA	NA
WP_001531768.1\|2123683_2124073_-\|tail	phage tail protein	E5FFG4	Burkholderia_phage	1.0e-14	37.9
WP_001018353.1\|2124108_2125749_-	hypothetical protein	A0A2I7R3J9	Vibrio_phage	1.2e-19	29.3
WP_000444667.1\|2125857_2126139_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000785563.1\|2126151_2126664_-\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_000117510.1\|2126681_2128184_-\|tail	phage tail sheath subtilisin-like domain-containing protein	R9TMQ0	Vibrio_phage	5.5e-69	33.5
WP_000626358.1\|2128180_2128570_-	hypothetical protein	A0A2H4EXG4	Aeromonas_phage	9.4e-05	30.8
WP_000829621.1\|2128569_2129754_-\|tail	phage tail protein	J9QDX3	Clostridium_phage	2.5e-16	35.2
WP_000203868.1\|2129746_2130373_-\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	2.0e-25	38.8
WP_000633314.1\|2130375_2131296_-\|plate	baseplate J/gp47 family protein	D5LGZ3	Escherichia_phage	6.4e-68	47.8
WP_000901289.1\|2131292_2131634_-	GPW/gp25 family protein	D4HTV2	Vibrio_phage	1.1e-20	51.6
WP_000079174.1\|2131636_2132539_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_000015612.1\|2132519_2133056_-	hypothetical protein	NA	NA	NA	NA
WP_000774516.1\|2133052_2133733_-	hypothetical protein	NA	NA	NA	NA
WP_001531773.1\|2133764_2134145_-	hypothetical protein	NA	NA	NA	NA
WP_000105179.1\|2134141_2134561_-	DNA-packaging protein	NA	NA	NA	NA
WP_001283997.1\|2134595_2135630_-\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	6.6e-106	56.5
WP_000206292.1\|2135688_2136018_-	hypothetical protein	A0A2R9YJN3	Escherichia_phage	2.0e-08	39.5
WP_001145892.1\|2136017_2137325_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	4.9e-106	53.7
WP_000126513.1\|2137324_2138899_-\|portal	phage portal protein	E4WL21	Enterobacteria_phage	8.6e-190	64.0
WP_000203897.1\|2138895_2139129_-	hypothetical protein	NA	NA	NA	NA
WP_000148195.1\|2139128_2140991_-\|terminase	phage terminase large subunit family protein	A0A1I9KF19	Aeromonas_phage	1.1e-191	53.2
WP_000168117.1\|2140977_2141544_-	hypothetical protein	A0A1I9KFT4	Aeromonas_phage	2.9e-31	46.2
WP_001531775.1\|2141912_2142158_+	hypothetical protein	NA	NA	NA	NA
WP_000734931.1\|2142217_2142412_-	hypothetical protein	NA	NA	NA	NA
WP_000131873.1\|2142419_2142899_-	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	4.6e-62	68.8
WP_000172496.1\|2142898_2143171_-\|holin	phage holin family protein	A0A0A0YPY6	Escherichia_phage	9.8e-09	42.9
WP_001294589.1\|2143170_2143554_-	hypothetical protein	NA	NA	NA	NA
WP_000064384.1\|2143666_2144338_-	antitermination protein	Q7Y3X2	Yersinia_phage	1.9e-16	33.5
WP_000717783.1\|2144337_2144631_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.3e-34	70.5
WP_000057010.1\|2144627_2145224_-	DUF1367 family protein	H9C173	Pectobacterium_phage	1.5e-70	64.1
WP_001025459.1\|2145301_2145481_-	hypothetical protein	NA	NA	NA	NA
WP_000847617.1\|2145632_2146274_-	hypothetical protein	NA	NA	NA	NA
WP_000536919.1\|2146517_2146751_+	hypothetical protein	NA	NA	NA	NA
WP_000224749.1\|2147149_2147638_+	ImmA/IrrE family metallo-endopeptidase	A0A142KB62	Gordonia_phage	6.4e-27	42.7
WP_001138663.1\|2147647_2148253_+	hypothetical protein	NA	NA	NA	NA
WP_000536231.1\|2148715_2149414_-	hypothetical protein	Q858R8	Enterobacteria_phage	1.5e-117	91.4
WP_001237642.1\|2150602_2151526_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_001531776.1\|2151700_2152489_-	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	1.1e-39	69.8
WP_000661082.1\|2153170_2153395_-	hypothetical protein	NA	NA	NA	NA
WP_000875806.1\|2153391_2153703_-	hypothetical protein	A0A222YXX1	Escherichia_phage	1.2e-34	65.7
WP_000918616.1\|2153699_2153936_-	hypothetical protein	NA	NA	NA	NA
WP_000214056.1\|2153937_2154348_-	hypothetical protein	NA	NA	NA	NA
WP_000609322.1\|2154386_2155802_-	AAA family ATPase	H9C165	Pectobacterium_phage	6.6e-173	66.7
WP_001023813.1\|2155791_2156547_-	hypothetical protein	H9C164	Pectobacterium_phage	2.4e-41	68.5
WP_000943914.1\|2156543_2156768_-	hypothetical protein	H9C163	Pectobacterium_phage	6.1e-17	54.1
WP_000431205.1\|2156807_2157284_-	hypothetical protein	H9C162	Pectobacterium_phage	1.9e-23	48.6
WP_000360804.1\|2157342_2157573_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	1.5e-21	63.2
WP_001296165.1\|2157671_2158085_+	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.7e-09	49.1
WP_000388260.1\|2159095_2159416_+	hypothetical protein	NA	NA	NA	NA
WP_000151806.1\|2159446_2161663_+	hypothetical protein	H9C157	Pectobacterium_phage	4.7e-101	35.6
WP_000100753.1\|2161659_2162229_+	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	6.1e-37	49.2
WP_000916334.1\|2162228_2162411_+	hypothetical protein	NA	NA	NA	NA
WP_000833838.1\|2162620_2162884_+	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	1.2e-06	38.0
WP_001531780.1\|2162852_2163869_+\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	1.1e-126	63.6
2163931:2164055	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2305455 : 2311907

Acidithiobacillus_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001298859.1\|2305455_2306997_+\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_001016257.1\|2307011_2307758_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_000846703.1\|2308206_2308617_+	hypothetical protein	NA	NA	NA	NA
WP_001542275.1\|2308837_2309656_+	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	8.8e-45	38.6
WP_001164966.1\|2309655_2309901_+	hypothetical protein	NA	NA	NA	NA
WP_001542276.1\|2309994_2310468_+	antirestriction protein	A0A2D0W9W4	Bordetella_phage	4.3e-12	33.1
WP_001186200.1\|2310483_2310960_+	RadC family protein	NA	NA	NA	NA
WP_000692345.1\|2311022_2311244_+	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
WP_000086752.1\|2311262_2311907_+	hypothetical protein	A0A2I6PI07	Pseudomonas_phage	1.8e-24	32.9

DBSCAN-SWA_8

2342710 : 2349013

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001100793.1\|2342710_2343253_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.0e-50	61.8
WP_000857525.1\|2343257_2344136_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.6e-107	64.5
WP_001023641.1\|2344193_2345093_-	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	1.7e-28	34.8
WP_000699407.1\|2345092_2346178_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.8e-101	53.9
WP_000183040.1\|2346550_2347444_-	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	3.0e-46	42.0
WP_001116066.1\|2347618_2349013_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	6.3e-19	33.0

DBSCAN-SWA_9

2443189 : 2452634

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001292786.1\|2443189_2444326_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	6.1e-161	96.7
WP_001296230.1\|2444322_2446326_+	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7
WP_001296231.1\|2446450_2446912_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_001295430.1\|2446952_2447423_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_000598641.1\|2447469_2448189_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295431.1\|2448185_2449871_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_001240408.1\|2450092_2450824_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	6.3e-111	98.5
WP_001216963.1\|2450883_2450991_+	protein YohO	NA	NA	NA	NA
WP_000783109.1\|2450971_2451703_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569347.1\|2451707_2452634_-	glycine betaine ABC transporter ATP binding protein YehX	F2Y1V5	Organic_Lake_phycodnavirus	2.6e-08	26.8

DBSCAN-SWA_10

3029227 : 3036367

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000103863.1\|3029227_3031789_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.6e-31	20.8
WP_001141293.1\|3031894_3032551_+	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	3.3e-50	46.1
WP_001296319.1\|3032601_3033369_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	9.7e-70	57.4
WP_000847996.1\|3033564_3034473_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.9e-117	76.2
WP_000590411.1\|3034469_3035732_+	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	2.2e-135	61.4
WP_001279004.1\|3035728_3036367_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	74.5

DBSCAN-SWA_11

3285635 : 3347725

Staphylococcus_phage(50.0%)

transposase,tRNA,lysis,protease,integrase

attL 3286844:3286861|attR 3347122:3347139

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001296354.1\|3285635_3286394_+\|protease	metalloprotease LoiP	NA	NA	NA	NA
WP_000105562.1\|3286823_3287744_-	agmatinase	NA	NA	NA	NA
3286844:3286861	attL	NA	NA	NA	NA
WP_000758881.1\|3287879_3288611_-	hypothetical protein	NA	NA	NA	NA
WP_001295380.1\|3288756_3290733_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_001297406.1\|3290741_3290873_-	acid stress response protein YqgB	NA	NA	NA	NA
WP_001331575.1\|3291008_3291224_+	hypothetical protein	NA	NA	NA	NA
WP_001062128.1\|3291527_3292682_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.0e-128	63.2
WP_001112301.1\|3293117_3294512_+	galactose/proton symporter	NA	NA	NA	NA
WP_001296359.1\|3294588_3295086_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_000286500.1\|3295180_3295888_+	deoxyribonuclease I	NA	NA	NA	NA
WP_001222509.1\|3295967_3296699_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_000593274.1\|3296711_3297662_+	glutathione synthase	NA	NA	NA	NA
WP_001053178.1\|3297770_3298334_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_000017111.1\|3298333_3298750_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_001296360.1\|3298864_3299845_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_000997795.1\|3299862_3300567_+	pyridoxal phosphate homeostasis protein	NA	NA	NA	NA
WP_001094831.1\|3300584_3301151_+	osmotic shock tolerance protein YggT	NA	NA	NA	NA
WP_001277229.1\|3301147_3301438_+	YggU family protein	NA	NA	NA	NA
WP_001174754.1\|3301445_3302039_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_000239963.1\|3302031_3303168_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_000783999.1\|3303482_3304469_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_000577034.1\|3304513_3305017_+	TRAP transporter small permease	NA	NA	NA	NA
WP_000378955.1\|3305016_3306318_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_000745240.1\|3306373_3307381_-	DUF1202 family protein	NA	NA	NA	NA
WP_000394132.1\|3307497_3308544_-	L-asparaginase 2	NA	NA	NA	NA
WP_000984796.1\|3308719_3309439_-	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_001296361.1\|3309459_3309600_-	hypothetical protein	NA	NA	NA	NA
WP_001107566.1\|3309622_3309949_-	YggL family protein	NA	NA	NA	NA
WP_000786911.1\|3309948_3310668_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_001296362.1\|3310828_3311881_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000091700.1\|3311908_3312184_+	oxidative damage protection protein	NA	NA	NA	NA
WP_000760323.1\|3312248_3313328_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_001296363.1\|3313529_3314786_+	nucleoside permease NupG	NA	NA	NA	NA
WP_000839781.1\|3314834_3316970_-	ornithine decarboxylase	NA	NA	NA	NA
WP_000234526.1\|3317362_3318070_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_001218869.1\|3318448_3319714_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	2.1e-77	38.1
WP_000147017.1\|3319969_3321013_+	hypothetical protein	NA	NA	NA	NA
WP_001774069.1\|3322706_3323258_-	HTH-type transcriptional regulator PapX	NA	NA	NA	NA
WP_000006213.1\|3325749_3325983_+	major pilus subunit operon transcriptional regulator PapI	NA	NA	NA	NA
WP_001513409.1\|3327850_3327964_-\|lysis	lysis protein	NA	NA	NA	NA
WP_001110186.1\|3329797_3330058_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_000109147.1\|3330099_3330660_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001296373.1\|3330699_3331128_+	DUF417 family protein	NA	NA	NA	NA
WP_000074472.1\|3331845_3333039_-	MFS transporter	NA	NA	NA	NA
WP_001296374.1\|3333174_3334899_+	aerobactin synthase IucA	NA	NA	NA	NA
WP_001287500.1\|3334899_3335847_+	N(6)-hydroxylysine O-acetyltransferase	NA	NA	NA	NA
WP_001015715.1\|3335846_3337589_+	aerobactin synthase IucC	NA	NA	NA	NA
WP_000750130.1\|3337585_3338863_+	NADPH-dependent L-lysine N(6)-monooxygenase	NA	NA	NA	NA
WP_000973516.1\|3338944_3341146_+	ferric aerobactin receptor IutA	NA	NA	NA	NA
WP_011076574.1\|3341696_3341840_-	hypothetical protein	NA	NA	NA	NA
WP_001034083.1\|3342089_3345977_+\|protease	serine protease autotransporter toxin Sat	Q9LA58	Enterobacterial_phage	1.2e-227	39.0
WP_001254932.1\|3346573_3347725_+\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
3347122:3347139	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013832

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013831

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection