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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013948 Piscirickettsia salmonis strain PSCGR01 plasmid pPsCRG01-3, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP013947 Piscirickettsia salmonis strain PSCGR01 plasmid pPsCRG01-2, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP013946 Piscirickettsia salmonis strain PSCGR01 plasmid pPsCRG01-1, complete sequence 0 crisprs NA 0 0 3 0
NZ_CP013945 Piscirickettsia salmonis strain PSCGR01 plasmid pPSCRG01-4, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP013944 Piscirickettsia salmonis strain PSCGR01, complete genome 2 crisprs DEDDh,cas3,DinG,csa3 0 0 33 0

Results visualization

1. NZ_CP013944
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013944_1 1098456-1098551 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013944_2 1628544-1628653 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3091 : 61661 56 Escherichia_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_2 185879 : 322840 120 Acinetobacter_phage(11.11%) tail,protease,tRNA,transposase NA
DBSCAN-SWA_3 330806 : 384244 48 Staphylococcus_phage(57.14%) transposase NA
DBSCAN-SWA_4 441241 : 563627 106 Staphylococcus_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_5 573742 : 679240 108 Bacillus_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_6 686597 : 758839 48 Staphylococcus_phage(66.67%) tRNA,transposase NA
DBSCAN-SWA_7 771312 : 831536 51 Acinetobacter_phage(18.18%) transposase NA
DBSCAN-SWA_8 845199 : 989406 115 Staphylococcus_phage(16.67%) integrase,protease,tRNA,transposase attL 869978:870037|attR 920402:921162
DBSCAN-SWA_9 1008468 : 1051661 44 Orpheovirus(20.0%) protease,tRNA,transposase NA
DBSCAN-SWA_10 1055207 : 1112456 51 Staphylococcus_phage(20.0%) tRNA,protease,transposase NA
DBSCAN-SWA_11 1119320 : 1153462 28 Burkholderia_virus(33.33%) transposase NA
DBSCAN-SWA_12 1193938 : 1254286 49 uncultured_Mediterranean_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_13 1282959 : 1299574 15 Acinetobacter_phage(50.0%) transposase NA
DBSCAN-SWA_14 1334221 : 1406384 54 Klosneuvirus(15.38%) tRNA,protease,transposase NA
DBSCAN-SWA_15 1424236 : 1469720 48 Acinetobacter_phage(15.38%) tRNA,transposase NA
DBSCAN-SWA_16 1540898 : 1675994 126 Staphylococcus_phage(21.88%) integrase,protease,tRNA,transposase attL 1551936:1551995|attR 1622181:1622472
DBSCAN-SWA_17 1695758 : 1754672 53 Acinetobacter_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_18 1758586 : 1818736 44 Burkholderia_virus(50.0%) tRNA,transposase NA
DBSCAN-SWA_19 1848491 : 1962308 94 Staphylococcus_phage(23.08%) tRNA,transposase NA
DBSCAN-SWA_20 1979810 : 2046170 49 Burkholderia_virus(22.22%) transposase NA
DBSCAN-SWA_21 2057206 : 2108283 46 Acinetobacter_phage(27.27%) transposase NA
DBSCAN-SWA_22 2123446 : 2184304 55 Burkholderia_virus(20.0%) protease,tRNA,transposase NA
DBSCAN-SWA_23 2209198 : 2253493 41 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_24 2308413 : 2355121 41 Synechococcus_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_25 2360816 : 2397095 34 Acinetobacter_phage(25.0%) protease,transposase NA
DBSCAN-SWA_26 2442243 : 2507865 57 Staphylococcus_phage(18.18%) plate,tRNA,transposase NA
DBSCAN-SWA_27 2511866 : 2575639 53 Planktothrix_phage(10.0%) transposase NA
DBSCAN-SWA_28 2607430 : 2650789 43 Staphylococcus_phage(22.22%) transposase NA
DBSCAN-SWA_29 2703484 : 2739424 32 Staphylococcus_phage(16.67%) transposase NA
DBSCAN-SWA_30 2762633 : 2802853 44 Staphylococcus_phage(42.86%) tRNA,protease,transposase NA
DBSCAN-SWA_31 2868936 : 2923561 57 Staphylococcus_phage(28.57%) tRNA,protease,transposase NA
DBSCAN-SWA_32 2929640 : 2977750 40 Erwinia_phage(18.18%) transposase NA
DBSCAN-SWA_33 3072544 : 3106943 31 Staphylococcus_phage(50.0%) tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP013947
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2595 : 16033 18 unidentified_phage(33.33%) terminase,transposase,capsid,tail,head NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP013946
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1736 : 67874 57 Streptococcus_phage(35.71%) integrase,transposase,portal attL 15514:15573|attR 67908:68422
DBSCAN-SWA_2 72592 : 128586 57 Streptococcus_phage(56.52%) transposase NA
DBSCAN-SWA_3 163497 : 168428 7 Streptococcus_phage(42.86%) transposase,terminase,portal NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP013948
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7327 : 21123 18 Moraxella_phage(18.18%) head,transposase,capsid,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage