CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP008866	Pseudomonas aeruginosa strain T38079 chromosome, complete genome	4 crisprs	csa3,RT,DEDDh,cas3,PD-DExK,DinG,WYL	0	1	8	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP008866_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008866_1

354997-355110

Orphan

Consensus_repeat	Method
GGCCAAAGAACTGGAGGGCAAGGTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008866_1

>merge|NZ_CP008866|1|354997-355110|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGAGCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGTGGCCAAAGAACTGGAGGGCAAGGTATGA

>NZ_CP008866|1|1|354997-355110|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGA	GCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGT
GGCCAAAGAACTGGAGGGCAAGGTATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008866.2\|WP_016852350.1\|342886_343552_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP008866.2\|WP_016852356.1\|363460_364015_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008866.2\|WP_003084299.1\|350287_351391_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP008866.2\|WP_003112945.1\|364280_364775_+\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
NZ_CP008866.2\|WP_003084339.1\|364777_365470_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP008866.2\|WP_016852355.1\|360900_361920_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP008866.2\|WP_003084301.1\|351809_352907_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP008866.2\|WP_016852354.1\|356153_358541_-\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|225241
NZ_CP008866.2\|WP_003111119.1\|341845_342724_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP008866.2\|WP_003084297.1\|348801_350172_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_CP008866.2\|WP_003084303.1\|352961_354116_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_CP008866.2\|WP_003112941.1\|358651_359704_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP008866.2\|WP_003084290.1\|347377_348736_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP008866.2\|WP_003118762.1\|360290_360902_-\|thiol-disulfide-isomerase	unknown	unknown	gnl\|CDD\|239267
NZ_CP008866.2\|WP_003107781.1\|343612_344674_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP008866.2\|WP_003112942.1\|359682_360186_-\|transcriptional-regulator	unknown	unknown	unknown
NZ_CP008866.2\|WP_003084320.1\|361939_362692_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008866.2\|WP_016852353.1\|346584_347337_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
NZ_CP008866.2\|WP_003112937.1\|344929_346306_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP008866.2\|WP_003118764.1\|362740_363439_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|226274

Protein	Function_ID	Function_description	E-value
NZ_CP008866.2\|WP_016852350.1\|342886_343552_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.56691e-09
NZ_CP008866.2\|WP_003112945.1\|364280_364775_+\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	2.14015e-67
NZ_CP008866.2\|WP_003084299.1\|350287_351391_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP008866.2\|WP_003084339.1\|364777_365470_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.29364e-79
NZ_CP008866.2\|WP_016852355.1\|360900_361920_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	1.73073e-56
NZ_CP008866.2\|WP_003084301.1\|351809_352907_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP008866.2\|WP_016852354.1\|356153_358541_-\|penicillin-acylase-family-protein	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0
NZ_CP008866.2\|WP_003111119.1\|341845_342724_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP008866.2\|WP_003084297.1\|348801_350172_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_CP008866.2\|WP_003084303.1\|352961_354116_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_CP008866.2\|WP_003112941.1\|358651_359704_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.54039e-32
NZ_CP008866.2\|WP_003084290.1\|347377_348736_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158
NZ_CP008866.2\|WP_003118762.1\|360290_360902_-\|thiol-disulfide-isomerase	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.00342131
NZ_CP008866.2\|WP_003107781.1\|343612_344674_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.00795e-165
NZ_CP008866.2\|WP_016852353.1\|346584_347337_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	4.197e-109
NZ_CP008866.2\|WP_003112937.1\|344929_346306_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.09186e-161
NZ_CP008866.2\|WP_003118764.1\|362740_363439_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	2.81845e-78

>NZ_CP008866.2|WP_003084303.1|352961_354116_+|polyamine-ABC-transporter-ATP-binding-protein
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>NZ_CP008866.2|WP_003084301.1|351809_352907_+|polyamine-ABC-transporter-substrate-binding-protein
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>NZ_CP008866.2|WP_003084299.1|350287_351391_+|polyamine-ABC-transporter-substrate-binding-protein
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>NZ_CP008866.2|WP_003084297.1|348801_350172_+|aspartate-aminotransferase-family-protein
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>NZ_CP008866.2|WP_003084290.1|347377_348736_+|glutamine-synthetase
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>NZ_CP008866.2|WP_016852353.1|346584_347337_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGDSIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACSKRAGQR
>NZ_CP008866.2|WP_003112937.1|344929_346306_-|glutamine-synthetase
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_CP008866.2|WP_003107781.1|343612_344674_-|polyamine-ABC-transporter-substrate-binding-protein
MPRLSALLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>NZ_CP008866.2|WP_016852350.1|342886_343552_-|TetR/AcrR-family-transcriptional-regulator
MQPTSSTRKPRASSQARIAAILDAARGLLADEGISGLTIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLSGFISDLNR
>NZ_CP008866.2|WP_003111119.1|341845_342724_-|N-carbamoylputrescine-amidase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES
>NZ_CP008866.2|WP_016852354.1|356153_358541_-|penicillin-acylase-family-protein
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLALAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLVAEKVNPDNPNQVWYQGEWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWNGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALPRLAGDADSPWWDDRRTERRETRADIVRTAWNASLAHLRGTLGNDPSGWLWGKAHTLTHEHALGQQALLKRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>NZ_CP008866.2|WP_003112941.1|358651_359704_+|AraC-family-transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHDVLTRHAEEQSRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT
>NZ_CP008866.2|WP_003112942.1|359682_360186_-|transcriptional-regulator
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASKLIERVDDLQEDRLELRDKYVKRIAKNVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>NZ_CP008866.2|WP_003118762.1|360290_360902_-|thiol-disulfide-isomerase
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALRPLAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG
>NZ_CP008866.2|WP_016852355.1|360900_361920_+|alpha/beta-hydrolase
MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLCSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>NZ_CP008866.2|WP_003084320.1|361939_362692_-|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>NZ_CP008866.2|WP_003118764.1|362740_363439_+|2OG-Fe(II)-oxygenase
MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGDLTPAAIGRGDGQVIREGIRGDLTQWLEPGESEACDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>NZ_CP008866.2|WP_016852356.1|363460_364015_-|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGHAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>NZ_CP008866.2|WP_003112945.1|364280_364775_+|DUF523-domain-containing-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGNRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG
>NZ_CP008866.2|WP_003084339.1|364777_365470_-|amino-acid-ABC-transporter-permease
MNSLQKLLEWLANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLILGFSVAVVRVTKVPVVSQIAAVYVSAFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILGIDKGQWEAGLSVGLTWGQTLWNIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIAETFQPLPLYLAAAGIYWLLSALFERVQKALENRLTAPLRR

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP008866_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008866_2

1876661-1876762

Orphan

Consensus_repeat	Method
GCGGCGGGTATCGGCGGATAACGCC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP008866_2

>merge|NZ_CP008866|2|1876661-1876762|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCCTCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTGCGGCGGGGTATCGGCGGATAACGCC

>NZ_CP008866|2|2|1876661-1876762|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCC	TCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTG
CGGCGGGGTATCGGCGGATAACGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008866.2\|WP_003091540.1\|1878055_1878322_-\|DUF2790-domain-containing-protein	unknown	unknown	gnl\|CDD\|371321
NZ_CP008866.2\|WP_003114812.1\|1880498_1881062_-\|peptidylprolyl-isomerase-A	unknown	unknown	gnl\|CDD\|182824
NZ_CP008866.2\|WP_003091533.1\|1883006_1883324_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008866.2\|WP_003091547.1\|1871896_1872208_+\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704
NZ_CP008866.2\|WP_023082219.1\|1870342_1870528_-\|DUF2061-domain-containing-protein	unknown	unknown	gnl\|CDD\|225746
NZ_CP008866.2\|WP_003109191.1\|1885124_1885460_-\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
NZ_CP008866.2\|WP_003116398.1\|1873949_1875749_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225457
NZ_CP008866.2\|WP_016852630.1\|1868000_1868804_-\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|225409
NZ_CP008866.2\|WP_003114808.1\|1870821_1871679_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270357
NZ_CP008866.2\|WP_003109182.1\|1876480_1876639_+\|DUF3309-domain-containing-protein	unknown	unknown	gnl\|CDD\|378708
NZ_CP008866.2\|WP_003114810.1\|1875745_1876372_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236391
NZ_CP008866.2\|WP_003091534.1\|1881877_1882807_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP008866.2\|WP_003109184.1\|1878603_1880436_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP008866.2\|WP_003116401.1\|1884215_1885115_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP008866.2\|WP_003091546.1\|1872204_1873860_+\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|236495
NZ_CP008866.2\|WP_016852631.1\|1868807_1870169_-\|alpha/beta-fold-hydrolase	unknown	unknown	unknown
NZ_CP008866.2\|WP_003114814.1\|1883470_1884112_+\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|224103
NZ_CP008866.2\|WP_003114813.1\|1881043_1881871_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|131480
NZ_CP008866.2\|WP_003114811.1\|1876898_1878023_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225688
NZ_CP008866.2\|WP_003116397.1\|1867002_1867860_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655

Protein	Function_ID	Function_description	E-value
NZ_CP008866.2\|WP_003091540.1\|1878055_1878322_-\|DUF2790-domain-containing-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	1.53651e-35
NZ_CP008866.2\|WP_003114812.1\|1880498_1881062_-\|peptidylprolyl-isomerase-A	gnl\|CDD\|182824	PRK10903, PRK10903, peptidylprolyl isomerase A.	5.29669e-93
NZ_CP008866.2\|WP_003109191.1\|1885124_1885460_-\|tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	1.70058e-64
NZ_CP008866.2\|WP_003091547.1\|1871896_1872208_+\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	2.28294e-48
NZ_CP008866.2\|WP_023082219.1\|1870342_1870528_-\|DUF2061-domain-containing-protein	gnl\|CDD\|225746	COG3205, COG3205, Predicted membrane protein [Function unknown].	1.7036e-27
NZ_CP008866.2\|WP_003116398.1\|1873949_1875749_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	0
NZ_CP008866.2\|WP_016852630.1\|1868000_1868804_-\|VacJ-family-lipoprotein	gnl\|CDD\|225409	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane].	1.05866e-100
NZ_CP008866.2\|WP_003114808.1\|1870821_1871679_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.52249e-117
NZ_CP008866.2\|WP_003109182.1\|1876480_1876639_+\|DUF3309-domain-containing-protein	gnl\|CDD\|378708	pfam11752, DUF3309, Protein of unknown function (DUF3309). This family is conserved in bacteria but its function is not known.	2.8739e-06
NZ_CP008866.2\|WP_003114810.1\|1875745_1876372_+\|3'-5'-exonuclease	gnl\|CDD\|236391	PRK09145, PRK09145, 3'-5' exonuclease.	2.00701e-94
NZ_CP008866.2\|WP_003091534.1\|1881877_1882807_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.24343e-39
NZ_CP008866.2\|WP_003109184.1\|1878603_1880436_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.066e-156
NZ_CP008866.2\|WP_003116401.1\|1884215_1885115_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	1.27099e-12
NZ_CP008866.2\|WP_003091546.1\|1872204_1873860_+\|cation-acetate-symporter	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_CP008866.2\|WP_003114814.1\|1883470_1884112_+\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	1.18979e-103
NZ_CP008866.2\|WP_003114813.1\|1881043_1881871_-\|alpha/beta-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	9.99012e-42
NZ_CP008866.2\|WP_003114811.1\|1876898_1878023_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225688	COG3146, COG3146, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP008866.2\|WP_003116397.1\|1867002_1867860_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.4231e-96

>NZ_CP008866.2|WP_003109182.1|1876480_1876639_+|DUF3309-domain-containing-protein
MSLGTILLIILILLLIGGLPVFPHSRNWGYGPSGIIGALLVVLLVLLLLGMI
>NZ_CP008866.2|WP_003114810.1|1875745_1876372_+|3'-5'-exonuclease
MNTMVKLPDSRWPGWRRRLYWWMHEAVEAEEVISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSLDAESIRIHKLRRADLEGQLQLEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISSLYHRKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLLKGPAPKVIH
>NZ_CP008866.2|WP_003116398.1|1873949_1875749_+|cyclic-nucleotide-binding/CBS-domain-containing-protein
MPDSFNFASPPFDQLRPHQRETLKQALSVGYYAPGETLLEAGSAVPGLFVLLKGVVEERGDDGRVFAQYAADDLFDVRGLFSGSSKHRYLAIEESIVYELPASCFHQLCGENPGFARFFQADLAAKRQLAQRDGQNLAEFILTRIAREHLLPALEVEASLSLGDAARLQLSHGADALLVRLERDGPELGIVTRTDLMSAHFRDGRSELEAIGPLAHGPLASVELGDFLFDAMILMTRQRIERVAVTEDGQVIGLLHLTQVLSLFSTHSHVLALRIARADDLGDLRRCAETLDTLIATLAGNGIRLRFIMQLVSALNEQLLERLFELLLPPTLRGRCCLLVMGSEGRGEQLLKTDQDNALVLADDLPQEQALAMMQRFSAALLEFGYPPCPGGVMASRPEWCKPLAAWQAELRGTLLEGKPEQLLRLSILADAWPVAGNLQLFEPLRRQLRGFADGGERWLADIAAAALQFDTPLTFLGQLKTQDARLDLKRGGIFPIVHGIRTLALREGLETRGTLARIEALKRHKVLEARLADDLSESFELFLQLRLTRQLAGQRDGRQQGLDVSGMSRHDRDMLRYGLHVVKKFKQSVARQFHLETR
>NZ_CP008866.2|WP_003091546.1|1872204_1873860_+|cation-acetate-symporter
MIARLLAALGLAAFAPALWADALTGDVQRQPLNVSAIVMFVAFVGATLCITYWASKRNRSAADYYAAGGRITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQKQIRTLSACGSLVVVAFYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVLYVLFGGMLATTWVQIIKAVLLLSGASFMAIMVLKHVNFDVSTLFSEAIKVHPKGEAIMSPGGLVKDPISAFSLGFALMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAILLVSTNPDFKDATGALIGGNNMAAVHLADAVGGSLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYASVFKGGKANEKDELRVSKMTTVALGVVAIVLGILFEKQNIAFMVGLAFSIAASCNFPVLLLSMYWKKLTTRGAMIGGWMGLITAVGLMVLGPTIWVQILGHEKAIYPYEYPALFSMIVAFVGIWFFSITDKSAAADEERARFFPQFIRSQTGLGASGAVAH
>NZ_CP008866.2|WP_003091547.1|1871896_1872208_+|DUF485-domain-containing-protein
MNDSIYQRIDTNPRFKELVAKRERFAWILSSIMLGLYVIFILLIAFQPQLLGARISPDSSVTWGIPMGVGLILAAFILTGLYVRRANGEFDSLNQEILKEAQQ
>NZ_CP008866.2|WP_003114808.1|1870821_1871679_+|glycine-betaine-ABC-transporter-substrate-binding-protein
MRMMRRLLCWSAGLAMSAAVGMAAAADKPVITIGYVDGWSDSVATTHVAAEVIREKLGYEVKLMPVAAGIMWQGVARGKLDAMLSAWLPGTHGAYYEKMKDKVVNLAINYPDARIGLIVPEYVSANSIADLQAQKDAFGGRVVGIDAGAGVMIKTDEAIKQYGLDYKLVASSGSGMIAELTRAENEKKPVVVTGWIPHWMFAKWKLKFLDDPKKVYGDTEHVDTVANPALEAKAKPVWEFLKKFGWKDGNEVGQVMLAIQEGAKPEDAAKQWVAANPGRVKDWVQ
>NZ_CP008866.2|WP_023082219.1|1870342_1870528_-|DUF2061-domain-containing-protein
MLKTLTFTVMHFIIAFSVAYALTGSIAVGGLVAAVEPLCNSVGFYFHEKIWKRFEKDGAPG
>NZ_CP008866.2|WP_016852631.1|1868807_1870169_-|alpha/beta-fold-hydrolase
MPHFLRFAALLGGLALGCANLAQARDVDAASYGYPLTNPFEATIATTPPELRPELPHSEDIDQKDYSLKLRPEREFALPDNFWPVKKLRYRLARQDHAAPLIFIIAGTGAHYASSFPEYLKKLFYQAGYHVVQLSSPTSWDFMASASRFATPGFSSDDADDLYRVMQAVRAQQRDLPVTDYYLTGYSLGALNAAFVSHLDESRRSFNFKKVLLLNPPVNLYTSVSNLDKLVETQVKGITDSRTFYEVVLSKLTRYFRQKGYVDINDAMLYDFQQSKQRLSNEEMAMLIGTSFRFSAADIAFTSDLVNRRGLITPPNYPINEGTSLEPFFKRALQCDFECYMTEQLIPMWRARYDGGSLTQLVNQVSLYKLQDYLHDSPKIAVMHNADDVILGPGDLGFLRRTFGERLTVYPYGGHCGNLNYKVNAQDMLDFFATPAAGQTKVASAALTQQAGN
>NZ_CP008866.2|WP_016852630.1|1868000_1868804_-|VacJ-family-lipoprotein
MSRTAHWMFALLLSAAASAQADEAAAPAELPPRQLDGDGFSRPLDQLKFNPGLDQREFERATLDALNMYDPWESWNRRVYHFNYRFDEWVFLPVVRGYEYVTPHFVRSGVSNFFDNLGDVPNLLNNLAQLKGKAAMETTARLLFNTTFGVLGLWDPATRMGLHKRSEDFGQTLGLYGVGSGPYLVLPILGPSNLRDTGGLVVDYVGEYQVNYLNVPQASGDHPEITALRVVDKRYNTSFRYGQMNSPFEYEKLRYIYTEARKLQIAE
>NZ_CP008866.2|WP_003116397.1|1867002_1867860_-|pirin-family-protein
MTRYRDVLELHTGHPASDGAGVRLTRVIGGPSPERFDPFLMLDQFDTQNPDDYVAGFPSHPHRGFETVTYMLEGRMRHEDHLGNRGLLKPGGVQWMTAAHGIIHSEMPEQVEGAMRGFQLWVNLPAKNKLAPAGYRDIEPEDVPRLETAGGVKVTVIAGRFDDGQAQQIGAVERPDTEPHYYDLQLPAGGRIAPRLPDGHRVLLYVYEGSLTVEGERPVEIATNRLARLSEEGELSLRSEAGARVLVLAGKPLREPIVQYGPFVMNSREEIEQALRDYRDGVLAV
>NZ_CP008866.2|WP_003114811.1|1876898_1878023_+|GNAT-family-N-acetyltransferase
MPIQTLATLADIDAAEWDALLPPAQPFLRHAFLSALEDSHSVTPATGWRPAHRVLRDPQGRLCAALPAYVKAHSYGEYVFDWSWADACQRAGIRYYPKLLVGVPFTPVAGARLLGEDEGLQGLLASLGEEAEASGLSSIHVNFTDARADTLLAARDGWLERLGCQYHWHNRGYRDFQDFLEALSSRKRKQLRKEREQVGGQGIEFEWREGGQLSELEWDFVYLCYANTYLVRDRDPYLSREFFGLLAERMPEAIRVVFAHQRGKPVAMAFSLVAGDTLYGRYWGCLAEFDRLHFETCFYQGLEFAIGAGLARFDAGAQGEHKLIRGFEPVLTRSWHYLAHPGLRDAVAQFLEQERAGVRAYAEEAHGLLPYRQA
>NZ_CP008866.2|WP_003091540.1|1878055_1878322_-|DUF2790-domain-containing-protein
MKLASVVSAVITSLAPMAFAQDVDKDPGRGLPVEEYHYGMQLDVKNVLHRTDNSTRTGVVPVTVVYEDHSGELHKIRFLEWGGSTSNG
>NZ_CP008866.2|WP_003109184.1|1878603_1880436_-|ABC-transporter-ATP-binding-protein
MLYRRFERLIDPFRSASERMPPSEVLRFYVYFLRQVWPVFLALLVVGLIVALIEVALFSYLGRIVDLAQSTPSAEFFRVHANELIWMAVVALVLRPLFNALHDMLVHQSINPSMTNLIRWQNHRYVLKQSLGFFQNDFAGRIAQRIMQTGNSLRDSAVQVVDALWHVLIYTVSALVLFAEADWRLMIPLVLWVFAYVGALAYFVPQVKRRSVEASDSRSKLMGRIVDGYTNITTLKLFAHTRQEEDYAREAIGDQTLKSQRAGRVVTSMDVTITVMNGVLITGTTGLALWLWSQELISVGAIALATGLVIRINNMSGWIMWVVGGIFENIGQVQDGMQTIALPRKVVDREDAQPLRVERGEVEFEHIAFHYGKGSGVIQGLDLKVRPGEKIGLVGPSGAGKSTLVNLLLRLYDLESGRILVDGQDIAGVTQESLRAQIGMVTQDTSLLHRSIRDNLLYGRPGASDAELMEAVRKARADEFIPLLSDAEGRRGFDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVESAIQESLETLMQGKTVIAIAHRLSTIARMDRLVVLDKGHIAESGTHAELLAHGGLYARLWQHQTGGFVGVD
>NZ_CP008866.2|WP_003114812.1|1880498_1881062_-|peptidylprolyl-isomerase-A
MLKRLLIAACTLLFAGSLLAATPAAKPHVLIATSLGEIEVELDPAKAPISVKNFLEYVDSGYYDGTLFHRVIPGFMVQTGGFSAGMQEKKTRAPIKNEADNGLLNERGTLAMARTGVVDSATSQFFINLTDNDFLNHGARDFGYAVFGKVVRGMGVVDQIAKVPTTRRNGFADVPSDDVVILSAKRL
>NZ_CP008866.2|WP_003114813.1|1881043_1881871_-|alpha/beta-hydrolase
MPDFQHRDCTLVYDDHPGPTERAPVLLLHGLGSSARDWEYQLPALLGRYRLLVPDLRGHGRSGKPRGGYSMAGFAEDCAALLDRLGCGPVHLVGISMGGMIGFQLACDRPDLLRSLTIVNSTPEVIPRKPREHLEVAKRKLLSRLLSLRTIGRALGRLLFPKAEQAGLREKIEARWAENDKRAYLASLDAIIGWGVQERLAEIACPTLVISADRDYTPVSLKQAYCERIADARLVVVEDSRHATPMDQPEIFNTTLLGFLADIDKTKEQPCSNVS
>NZ_CP008866.2|WP_003091534.1|1881877_1882807_-|LysR-family-transcriptional-regulator
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSISYTVARMQEQLGVPLLRIDGRKAVLTEAGEVLLRRSRQLVKQAGQLEELAHHMEQGWEPEVRLVVDAAYPTARIVRSLSAFMPQSRGCRVLLREEVLSGVEEALIQGAADLAISGLIIPGHLGADLSVVEFVAVAHPDHPLHRLQRELTHQDLETQMQVVIRDSGRLQPRDHGWLGAEQRWTVGSLATAATFVGNGLGFAWLPRHIIERELQSGQLKPLPLSQGGVRQSRFYLYTNKEKPLGPASQILMEMLKSFANVPLNAPFAAPEPAAE
>NZ_CP008866.2|WP_003091533.1|1883006_1883324_+|hypothetical-protein
MKRLCCFALSLLPLSAFAYPIEVDPQLNGTEVSYSTQDIGRDMGAILLTNLGGQAAECTAVFRNGPETPKVRKGVIQPGQNSNFTAQFGRDIIKLRIKLTCKIAK
>NZ_CP008866.2|WP_003114814.1|1883470_1884112_+|FMN-dependent-NADH-azoreductase
MSRVLVIESSARQRGSVSRLLTAEFISHWKIAHPADRFQVRDLAREPLPHLDELLLGAWTTPCDGHSAAERRALERSNRLTEELRMADVLVLAAPMYNFAIPSSLKSWFDHVLRAGLTFRYAEQGPEGLLQGKRAFVLTARGGIYAGGGLDHQEPYLRQVLGFVGIHDVTFIHAEGMNMGPEFREKGLARARERMRQALETDTSLCVPLPTLR
>NZ_CP008866.2|WP_003116401.1|1884215_1885115_-|DMT-family-transporter
MNRRSALAALHGGALLFGLTGVFGKLASASPGVIVFGRALFAVLALGLFARLAGQAWRALGPAQWLRLALCGLLLAGHWVSFFIAVKTAGVAIATLGFASFPAFTVILEGLLFRERIHLAEGLLVVLVSLGLVLVTPNFDLASGATLGLLWAILSGLLFALLSLANRSNSGQVGPVQAALWQNLVVALCLLPFAVGELPALPALDWLWLALLGVFCTGLAHSLFVASLAVVKARTAALVFALEPVYGIAFAWLLFHETPGPRMFLGGALIILAIVLSARLGARGRKTAVGDERGDPERA
>NZ_CP008866.2|WP_003109191.1|1885124_1885460_-|tRNA-binding-protein
MDIIEWQDFERVELRVGTILSAAPNPKARKPAYVLEVDLGPLGLRTSSAQLTAHYQAEQLVGRQVLCVCNFAPKQIAGVRSEVLVTGVYDSEDKVVLAGFDKPLPNGARLA

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP008866_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008866_3

5225896-5226058

Orphan

Consensus_repeat	Method
CCCTACGGACCGGCGCTCCGCTGGCCCAACGTGGTGTAGGGCGAATAACCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008866_3

>merge|NZ_CP008866|3|5225896-5226058|CRISPRCasFinder
CCCTACGGACCGGCGCTCCGCTGGCCCAACGTGGTGTAGGGCGAATAACCGCCACGCGGTTATCCGCCATTTCAGACGCCTCACGGCGAATAACGCCTGGGGCGTTATCCACCCTACGGACCGGCGCTCCGCTGGCCCAACCTGGTGTAGGGCGAATAACCGC

>NZ_CP008866|3|3|5225896-5226058|CRISPRCasFinder
CCCTACGGACCGGCGCTCCGCTGGCCCAACGTGGTGTAGGGCGAATAACCGC	CACGCGGTTATCCGCCATTTCAGACGCCTCACGGCGAATAACGCCTGGGGCGTTATCCA
CCCTACGGACCGGCGCTCCGCTGGCCCAACCTGGTGTAGGGCGAATAACCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008866.2\|WP_031636812.1\|5220709_5221000_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008866.2\|WP_003101146.1\|5232331_5232640_-\|ribbon-helix-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226771
NZ_CP008866.2\|WP_003120855.1\|5222041_5222425_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008866.2\|WP_016852098.1\|5221584_5221941_-\|DUF4124-domain-containing-protein	unknown	unknown	gnl\|CDD\|379230
NZ_CP008866.2\|WP_003101143.1\|5233348_5233960_-\|DUF2846-domain-containing-protein	unknown	unknown	gnl\|CDD\|378537
NZ_CP008866.2\|WP_003455444.1\|5222518_5223325_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274513
NZ_CP008866.2\|WP_003101151.1\|5227914_5229042_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP008866.2\|WP_023118673.1\|5216084_5216906_+\|phage-BR0599-family-protein	unknown	unknown	gnl\|CDD\|274038
NZ_CP008866.2\|WP_003129230.1\|5217358_5219566_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379255
NZ_CP008866.2\|WP_003126844.1\|5216914_5217154_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008866.2\|WP_003101155.1\|5226157_5226931_-\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235852
NZ_CP008866.2\|WP_073653404.1\|5230939_5232247_-\|Nramp-family-divalent-metal-transporter	unknown	unknown	gnl\|CDD\|234815
NZ_CP008866.2\|WP_003116189.1\|5229319_5230843_+\|fumarate-hydratase	unknown	unknown	gnl\|CDD\|224862
NZ_CP008866.2\|WP_003120861.1\|5232660_5233245_-\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153243
NZ_CP008866.2\|WP_003121473.1\|5221073_5221298_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008866.2\|WP_016852099.1\|5234053_5235340_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP008866.2\|WP_003120863.1\|5235439_5236519_-\|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein	unknown	unknown	gnl\|CDD\|224419
NZ_CP008866.2\|WP_003093930.1\|5224405_5225857_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235619
NZ_CP008866.2\|WP_023118672.1\|5217150_5217369_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008866.2\|WP_003101153.1\|5226995_5227922_-\|iron-sulfur-binding-ferredoxin-reductase	unknown	unknown	gnl\|CDD\|235575

Protein	Function_ID	Function_description	E-value
NZ_CP008866.2\|WP_003101146.1\|5232331_5232640_-\|ribbon-helix-helix-domain-containing-protein	gnl\|CDD\|226771	COG4321, COG4321, Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only].	6.44728e-40
NZ_CP008866.2\|WP_003101155.1\|5226157_5226931_-\|enoyl-CoA-hydratase	gnl\|CDD\|235852	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.	2.79206e-90
NZ_CP008866.2\|WP_016852098.1\|5221584_5221941_-\|DUF4124-domain-containing-protein	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	5.5104e-11
NZ_CP008866.2\|WP_003120863.1\|5235439_5236519_-\|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein	gnl\|CDD\|224419	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism].	8.25583e-83
NZ_CP008866.2\|WP_003101143.1\|5233348_5233960_-\|DUF2846-domain-containing-protein	gnl\|CDD\|378537	pfam11008, DUF2846, Protein of unknown function (DUF2846). Some members in this family of proteins with unknown function are annotated as lipoproteins however this cannot be confirmed.	1.20717e-26
NZ_CP008866.2\|WP_003101151.1\|5227914_5229042_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.30352e-61
NZ_CP008866.2\|WP_003093930.1\|5224405_5225857_+\|pyruvate-kinase	gnl\|CDD\|235619	PRK05826, PRK05826, pyruvate kinase; Provisional.	0
NZ_CP008866.2\|WP_003455444.1\|5222518_5223325_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	1.96341e-05
NZ_CP008866.2\|WP_016852099.1\|5234053_5235340_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	3.3436e-33
NZ_CP008866.2\|WP_073653404.1\|5230939_5232247_-\|Nramp-family-divalent-metal-transporter	gnl\|CDD\|234815	PRK00701, PRK00701, divalent metal cation transporter MntH.	0
NZ_CP008866.2\|WP_003116189.1\|5229319_5230843_+\|fumarate-hydratase	gnl\|CDD\|224862	COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion].	1.05118e-147
NZ_CP008866.2\|WP_003120861.1\|5232660_5233245_-\|DJ-1/PfpI-family-protein	gnl\|CDD\|153243	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	3.72461e-111
NZ_CP008866.2\|WP_003101153.1\|5226995_5227922_-\|iron-sulfur-binding-ferredoxin-reductase	gnl\|CDD\|235575	PRK05713, PRK05713, iron-sulfur-binding ferredoxin reductase.	0
NZ_CP008866.2\|WP_023118673.1\|5216084_5216906_+\|phage-BR0599-family-protein	gnl\|CDD\|274038	TIGR02218, conserved_hypothetical_protein, phage conserved hypothetical protein BR0599. This model describes a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions. [Mobile and extrachromosomal element functions, Prophage functions].	8.88919e-87
NZ_CP008866.2\|WP_003129230.1\|5217358_5219566_+\|hypothetical-protein	gnl\|CDD\|379255	pfam13550, Phage-tail_3, Putative phage tail protein. This putative domain is found in the large gene transfer agent protein. These produce defective phage like particles. This domain is similar to other phage-tail protein families.	4.05237e-07

>NZ_CP008866.2|WP_003093930.1|5224405_5225857_+|pyruvate-kinase
MSVRRTKIVATLGPASNSPEVLEQLILAGIDVARLNFSHGTPDEHRARARLVRELAAKHGRFVALLGDLQGPKIRIAKFANKRIELQVGDKFRFSTSHARDAGTQEVVGIDYPDLVKDCGVGDELLLDDGRVVMVVEEVAADELRCRVLIGGPLSDHKGINRRGGGLTAPALTDKDKADIKLAADMDLDYVAVSFPRDAKDMEYARRLLTEAGGKAWLVAKIERAEAVADDDALDGLIRASDAVMVARGDLGVEIGDAELVGIQKKIILHARRNNKVVITATQMMESMIHSPMPTRAEVSDVANAVLDYTDAVMLSAESAAGEYPVEAVKAMARVCQGAEKHPTSQKSSHRLGQTFDRCDESIALASMYTANHFPGIKAIICLTESGFTPLIMSRIRSSVPIYAYSPHRETQARVAMFRGVETIPFDPAALPAEKVSQAAVDELLKRGVVTKGDWVILTKGDSYTAQGGTNTMKVLHVGDLLV
>NZ_CP008866.2|WP_003455444.1|5222518_5223325_+|tetratricopeptide-repeat-protein
MRFARRLVLLPLLSLLAACSPTTPLFVAQVTTGEVAEYKQMKSNRMTAAIEEEGDLLTYSAMAIRDNRSAEAEKLYLTGYDNSRYSAEVRGISLYQIGLIYMSRYNDQRDDAKATDYFQRVVREFPGTHAAEHAQARLLAMRQRAREPVQKSARELLATWKPQQNLDLYKTSLDPDMTLLSRRAVLKDRVDEAAELYLLAVNDPAIPAGIKEKALYQLGLMYLAPDNPHPNRDKAIEYLRRQLLDYPEGELSNKAGRHLDQALNVQPR
>NZ_CP008866.2|WP_003120855.1|5222041_5222425_-|hypothetical-protein
MPMRSLIVACLALSATGCNSWSLNSDLNGAYRAYDKGDCAQVMLDLSRAERRIRARPYLQPEISLLRGQCLERQSLFVDAAQTYHFIIARYPTSEYAYRAKARLETLRQLGRLSETPASASAVPTRL
>NZ_CP008866.2|WP_016852098.1|5221584_5221941_-|DUF4124-domain-containing-protein
MRALWFCVALMPVLAQADIYRWTDAQGKVHFSATPPAGAQRVEVRPQVVERTAAAERAGQRQAALAEECGRLRQQLSQLERGGRFYRQDAGGGPVYLSDAELDAIRRELASRESERCR
>NZ_CP008866.2|WP_003121473.1|5221073_5221298_+|hypothetical-protein
MDEVLRQRLRAELLEVGFLNQCCLDLMESMEAEFSLTKDQRECIEQLSRFLREGIGKLTALSERVADGDIVVLC
>NZ_CP008866.2|WP_031636812.1|5220709_5221000_+|hypothetical-protein
MTMTKRVLLKGEFFAEWSGSLDEAAALAGVPVGDLAFHPDDLLAEVQEQRRQAYRTESDPLRLEAEFDAIAAGTEPDLAAWVAAVQAIKARYPLPE
>NZ_CP008866.2|WP_003129230.1|5217358_5219566_+|hypothetical-protein
MGAKPKAQIVAWRYYFDIHFALGKKVDEVCAIRASGKTAWKGSITSNGQIRINAPELFGGDKGEGGLDGTLDVLFGDEDQGVLPRLAAMLGGLVPAFRGISTCFYSGLVTSVNPYPKKWEILRRGGNRLWDGNPWYPEKQFIWLADGQIKAMNPAHILYLVYTGRDFRGLARTRMDEASWRAAADTLYAEGVGLCFEWTRSDSFKNFCETVKSHIGGEVYPNRQTGQISIRLLRDDYNVADLPLFDEDSGLLEITQEKTSSTSLAPSQLIVKYIDQIDGEQRQVIITNNAVAASQGRRSSEEIEFIGAPTGELAGRFGEREMRLKTAGLKRYKAIFDRRARSLNPGQPFRIRSTRRGIPETVVRVGRIEDNFLGDGKIALTVVQDQFNLPATTGVAPPPPGWIPPDRTPRAVTVRRLIEAPYRELAGVIDPANLQLLDVSASYLAALAEAPTSLSQSYTLTDRVGSSGAFVDRGTGDWCPTGLLAAELPLAAGPSVVTLTNASRLEDVTVGQAAVVDDEIVRVDAVNYVSGTVTLARGCADTVPAKHLAGARVWFYDTFEAVDETVYSQGVTLQARLLTNTSEGQLAPALAATDSLTLTGRQGKPYPPGQFRINGSAYPTKVYGALSVSWAKRDRIGQADQLIDTTVGNIGPEAGATVTLQVYSGTTLKRTYAGLTSSSWSYPLAEDMADGPLQDVRLVLRSVRDGINSWQQHDITIERHGLGFRLGEELGGVAQ
>NZ_CP008866.2|WP_023118672.1|5217150_5217369_+|hypothetical-protein
MIVTVQHLHTVPTWTTRQGYCHGQARAFFKRHGLDWLSFLRNGIDADLLVATGDALALKLVEHARREVAHGR
>NZ_CP008866.2|WP_003126844.1|5216914_5217154_+|hypothetical-protein
MDPITINLVILAASYILSSVLAPKPQKPKPAAFDAADFPLCEEGEDQAVVFGQCWSKSWMVLTVDNRRLKAIKTKASKK
>NZ_CP008866.2|WP_023118673.1|5216084_5216906_+|phage-BR0599-family-protein
MSFNSRESSLADGQPVRLYQFSRGAIRWSYNSSDRDITYQNQVFRTVPGGITDNGIICSGDPQSDQFVITAPADLDVALLYKTRSPSGAIDLVVYDMHYGDAEAAVSWVGQIGDVDWPTVDSCRITCVSEDELMDQPGLIDTYCRTCTAVLGDHRCKVNLVPHRVTLTPQSVSDWMISSGVVAGYADGWFTAGYVEWQVDGDNYDRRHIERHAGADLYILGGTQGIPAGAQLRVYPGCDFLAETCDAKFDNLLNFRGINKLQGKSPFDGDQVW
>NZ_CP008866.2|WP_003101155.1|5226157_5226931_-|enoyl-CoA-hydratase
MSELIRVEREAGLLTLRLDRQDKKNALTRAMYSRMAEALLEAQADTAVRVVLITGGDACFTSGNDILDFLEQPPSLRDSPVGRFMSALLEFPKPVIAAVNGPAVGIGTTLLLHCDLVFVGRNARLKMPFVNLGLTPEFGSSLILPRMLGHARAAELLMLGQDFSGEQAAAWGLANAALEDGATVLEHARDAARRFLHLAPSAVVESKRLMKAPFIEELRRVIAEEGDIFSTRLRSPEAIEALSAFMHRRQPDFSRFA
>NZ_CP008866.2|WP_003101153.1|5226995_5227922_-|iron-sulfur-binding-ferredoxin-reductase
MPDIRVGERRLAVAAGSNLLDALLAGGIAVPHSCRAGSCHACLVHCLQGEVDDTLPEALDPARREAGWRLACQCRVLGDLVLQPFDPERDGLPARVVACHWLGDVLRLRLEPERPLRYRAGQHLLLWSDDGVARPYSLASLPHEDPWLEFHIDCSAPGAFCDRARRLAPGALLRLGELRGGALRYEPDWQERPLLLMAAGTGLAPLWGILREALRAEHQAPIQLLHLARDHYLASELAELAGRHPQVRVNLVSAAQLPSALADLRLVPRRSMALLCGQPASVERFARHLYLAGVPRSQTLADLFLPHA
>NZ_CP008866.2|WP_003101151.1|5227914_5229042_-|GGDEF-domain-containing-protein
MRTDKPPLKQRALQKLLLRRFGMAAGTYLLGLVLLWLALLSGFYRAAPTTAAASTTLVVACQLAFLWLFASGRNLRYADPSLTEPQVLVAIAWLTYFLYHVDSLRGTFMVFYVLALLFGVFQLPPRVFARCAALAFIAFSGIYLVEALQQRLELPGRAALQVLVMFIVMVWLSLFASYIQAMRQRMRQRRYALQAHQDTLRGMMRQLEDLVATDELTGLFNRRHFMRMASRALEDLLPNRQHGLALIDLDHFKRINDRHGHAAGDRVLQTFAAVARSCLRDGDVLARYGGEEFVLLLPHADAEQLESCCERLRLAFQQAEPVGVTVDTLSLSVGMTLLYADDDLDEALQRADQALYRAKRGGRNRCDATWEVTSA
>NZ_CP008866.2|WP_003116189.1|5229319_5230843_+|fumarate-hydratase
MAVIKQDDLIQSVADALQFISYYHPVDFIQAMHEAYLREESPAARDSMAQILINSRMCATGHRPICQDTGIVTVFVRVGMDVRWDGATMSVDDMINEGVRRAYNLPENVLRASILADPAGARKNTKDNTPAVIHYSIVPGDKVEVDVAAKGGGSENKSKMAMLNPSDSIVDWVLKTVPTMGAGWCPPGMLGIGIGGTAEKAAVMAKEVLMDPIDIHELKARGPQNRIEELRLELFEKVNQLGIGAQGLGGLTTVLDVKIMDYPTHAASLPVCMIPNCAATRHAHFVLDGSGPAELEAPSLDAYPEIVWEAGPSARRVDLDKITPEEVQSWKPGETLLLNGKMLTGRDAAHKRMVDMLNKGETLPVDLKGRFIYYVGPVDPVGDEVVGPAGPTTATRMDKFTRQILEQTGLLGMIGKSERGPIAIEAIKDNKAVYLMAVGGAAYLVAQAIKKSKVLAFAELGMEAIYEFEVKDMPVTVAVDTNGESVHITGPAVWQKKIAESLAIEVK
>NZ_CP008866.2|WP_073653404.1|5230939_5232247_-|Nramp-family-divalent-metal-transporter
MPTTATAPFCPSAVSHSVAVPADASPLRKLALFIGPGLLVSVGYMDPGNWATAIEAGSRFGYALLFVVVLASFSGMLLQSLCSRLGIATGRDLAQLSRERYRPGVARGQWLLAELSIVATDLAEVLGAALAFHLLLGVSITTGVVLTAFDTLIVLALQGANFRRLEAIVLGLIATIGACFFVELVLIGPYWPDVAAGLRPSWDTLSSQEPLYLAIGILGATVMPHNLYLHSSVVQTRVSGDDAASKRSAIRFSRLDTIGSLSLALLVNAAILILAAAAFHGSGHTEVVEIQDAYHLLDPLVGGALASFLFGFALLAAGQSSTFTGTIAGQVVMEGFLRAKIPCWQRRLITRGLALVPALIGVLWLGEAAVGKLLVLSQVVLSLQLPFALWPLIRFSSDRGLMGEFVNPRWVSALAWSLFGLISAANLTLLYFWFG
>NZ_CP008866.2|WP_003101146.1|5232331_5232640_-|ribbon-helix-helix-domain-containing-protein
MCELYVKADPILYESRSRSLRIRGVVTTLRLENQFWDILREIAEGEGLSTNQLITNLYEEVMDYRGEVLNFASFLRVSCTRYLAQRREKVAELSLVGQRAQA
>NZ_CP008866.2|WP_003120861.1|5232660_5233245_-|DJ-1/PfpI-family-protein
MMAAKKILMLVGDYAEDYETMVPFQALQMVGHQVHAVCPDKRAGQSVRTAIHDFEGDQTYSEKPGHNFTLNADFAQARAEDYDALLIPGGRAPEYLRLNEQVLALVRDFDAARKPIAAVCHGAQLLAAAGVLQGRACSAYPACAPEVRLAGGEYVDLPPDQAHVDGHLVTAPAWPAHPAWLARFLEALGTRISH
>NZ_CP008866.2|WP_003101143.1|5233348_5233960_-|DUF2846-domain-containing-protein
MLRSLSLALSIVASLVGCSTPGAFFGAVDGPAFVAHPSADASHATVYLYRPRSQWADEELEAPGIFLNNELIGSLPSNGYLAFEFETGSYKLEMRRPLAGSFWTLFADGPMDFTRIASFMLEARAGSVYYLRYDELNPPPKSEHPAGEGDGPLQLVAADLGAAEIGATHQVQEPMQFAASGYRKRVQRSFWEGVGRALDKIGI
>NZ_CP008866.2|WP_016852099.1|5234053_5235340_-|acyltransferase
MATPDSKERFIGLEWLRFLLGLYVVVYHTLHTYPKEQKFPGLDELTSLGFFATSTFFVLSGFLLAHVYARSGRLRESARSFWTKRLSNLYPLHLFSLLLSILVLLALSHLGIGPELDKATPRFVIYDTNEVLGRTHPELFLHWMSNTELFVNSILQILLLQAWNPYYLTFNAPLWSLSTLMFFYLAFPFVAPRLMRSRHKWKVLALVWLVYLIPPALVVASESYGIPWTGLLHRNPLLRLPEFLGGILAYGLFRGYRDRGMVPGRGLLAALVALVVAAFLVADYLFTQGAKHWYFLLHNGLLLPAQLLLVCLCALPADPKSAFVRHWSPRLGAASLSLFALHVPMFTLFSRSERLIAVPGRCLDDWRACTEAAAALPSSLLYYPLFLVLLVAFCVLFQERGVVPVRKWLVRRLMPAPAPALAKVPRPA
>NZ_CP008866.2|WP_003120863.1|5235439_5236519_-|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein
MLLAIEAAQRSIELELYLVEDGHCAELFLVALLDARRRGVAVRCLFDGFGCLGLGSAWIQRLREAGGELRLYNPLRWKLTGGNLYRDHRKLLLVDGRLGYVGGAGITDEFWEPVSDVSAWREVMVEMDGPVVADWAALFERQWLACLEEKAWKPREGMTLTRLPPQPGAARGLGRVAYADARQHRDILQSLVRALNGSRRRIWLATPYFLPTWKVRRALRKAAQRGVEVRLLLAGRLTDHAPVRYAGQRYYPRLLRAGVRIHEYQPRFLHLKMVMVDDWVSVGSCNFDHWNLRFNLDANLEALDPDFTNEAAASLLADFADSREVTLAMWRARPLWMRLHQRLWGWLDRVVVNFLDRRR

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Crispr_ID: NZ_CP008866_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008866_4

5965984-5966078

Orphan

Consensus_repeat	Method
GCCGACAACGGCAGCGAGCAGACCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008866_4

>merge|NZ_CP008866|4|5965984-5966078|CRISPRCasFinder
GCCGACAACGGCAGCGAGCAGACCGTCGACCGCCTGCACAAGGACATGACCAAGGCCGAAGCCCGCCTGGCCGACAACGGCAGCGAACAGACCGT

>NZ_CP008866|4|4|5965984-5966078|CRISPRCasFinder
GCCGACAACGGCAGCGAGCAGACCGT	CGACCGCCTGCACAAGGACATGACCAAGGCCGAAGCCCGCCTG
GCCGACAACGGCAGCGAACAGACCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008866.2\|WP_003095492.1\|5961312_5961720_-\|Rho-termination-factor-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|377850
NZ_CP008866.2\|WP_003095479.1\|5959725_5960142_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183165
NZ_CP008866.2\|WP_003095515.1\|5968433_5969123_+\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|130454
NZ_CP008866.2\|WP_003095519.1\|5970483_5971800_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NZ_CP008866.2\|WP_003116116.1\|5967672_5968296_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008866.2\|WP_016852188.1\|5973128_5974229_-\|ferredoxin-reductase	unknown	unknown	gnl\|CDD\|99812
NZ_CP008866.2\|WP_003121125.1\|5957214_5958078_-\|oxaloacetate-decarboxylase	unknown	unknown	gnl\|CDD\|225311
NZ_CP008866.2\|WP_003095488.1\|5960924_5961269_+\|osmotically-inducible-lipoprotein-OsmE	unknown	unknown	gnl\|CDD\|183058
NZ_CP008866.2\|WP_003107570.1\|5974387_5975017_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236881
NZ_CP008866.2\|WP_003161310.1\|5967004_5967619_-\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|226602
NZ_CP008866.2\|WP_016852187.1\|5972019_5973132_-\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|225779
NZ_CP008866.2\|WP_003095476.1\|5958285_5959551_+\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NZ_CP008866.2\|WP_003095503.1\|5965045_5965579_+\|bacterioferritin	unknown	unknown	gnl\|CDD\|225104
NZ_CP008866.2\|WP_003095526.1\|5975246_5975750_+\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
NZ_CP008866.2\|WP_003095496.1\|5961866_5962679_+\|c-di-GMP-binding-multidrug-transporter-transcriptional-regulator-BrlR	unknown	unknown	gnl\|CDD\|226231
NZ_CP008866.2\|WP_016852186.1\|5966240_5967008_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239026
NZ_CP008866.2\|WP_016852185.1\|5962680_5964750_-\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|225529
NZ_CP008866.2\|WP_003095483.1\|5960296_5960836_+\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
NZ_CP008866.2\|WP_003099516.1\|5969101_5970493_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|273593
NZ_CP008866.2\|WP_003121124.1\|5956508_5957123_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP008866.2\|WP_003095492.1\|5961312_5961720_-\|Rho-termination-factor-N-terminal-domain-containing-protein	gnl\|CDD\|377850	pfam07498, Rho_N, Rho termination factor, N-terminal domain. The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain (pfam07497).	0.000208897
NZ_CP008866.2\|WP_003095479.1\|5959725_5960142_-\|hypothetical-protein	gnl\|CDD\|183165	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF.	1.76735e-18
NZ_CP008866.2\|WP_003095515.1\|5968433_5969123_+\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	2.43467e-112
NZ_CP008866.2\|WP_003095519.1\|5970483_5971800_-\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.70918e-108
NZ_CP008866.2\|WP_016852188.1\|5973128_5974229_-\|ferredoxin-reductase	gnl\|CDD\|99812	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	8.19115e-87
NZ_CP008866.2\|WP_003121125.1\|5957214_5958078_-\|oxaloacetate-decarboxylase	gnl\|CDD\|225311	COG2513, PrpB, PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism].	1.3777e-87
NZ_CP008866.2\|WP_003095488.1\|5960924_5961269_+\|osmotically-inducible-lipoprotein-OsmE	gnl\|CDD\|183058	PRK11251, PRK11251, osmotically-inducible lipoprotein OsmE.	1.90142e-51
NZ_CP008866.2\|WP_003161310.1\|5967004_5967619_-\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|226602	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion].	1.20616e-69
NZ_CP008866.2\|WP_016852187.1\|5972019_5973132_-\|fatty-acid-desaturase	gnl\|CDD\|225779	COG3239, DesA, Fatty acid desaturase [Lipid metabolism].	5.26797e-66
NZ_CP008866.2\|WP_003095476.1\|5958285_5959551_+\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	0
NZ_CP008866.2\|WP_003095503.1\|5965045_5965579_+\|bacterioferritin	gnl\|CDD\|225104	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism].	1.01703e-50
NZ_CP008866.2\|WP_003095526.1\|5975246_5975750_+\|urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	2.44267e-58
NZ_CP008866.2\|WP_003107570.1\|5974387_5975017_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|236881	PRK11202, PRK11202, HTH-type transcriptional repressor FabR.	4.59942e-41
NZ_CP008866.2\|WP_016852186.1\|5966240_5967008_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239026	cd02108, bact_SO_family_Moco, bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	4.55161e-96
NZ_CP008866.2\|WP_016852185.1\|5962680_5964750_-\|AsmA-family-protein	gnl\|CDD\|225529	COG2982, AsmA, Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane].	0
NZ_CP008866.2\|WP_003095483.1\|5960296_5960836_+\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	5.52525e-29
NZ_CP008866.2\|WP_003099516.1\|5969101_5970493_+\|sensor-histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	0
NZ_CP008866.2\|WP_003095496.1\|5961866_5962679_+\|c-di-GMP-binding-multidrug-transporter-transcriptional-regulator-BrlR	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	1.65802e-48

>NZ_CP008866.2|WP_003095503.1|5965045_5965579_+|bacterioferritin
MTTVQLTDVQTLRDRARKNIQEGAVTEGYSADRQTVLRLLNEALATELVCFLRYKRHYFMATGLKASIAAAEFLEHANQEMQHADQLAERIMQLGGEPDFNPRGLEERSHAEYVEGKTLKDMVTENLIAERIAIDSYREIITYLGNDDPTTRRIFEEILAQEEEHADDMADILDDLA
>NZ_CP008866.2|WP_016852185.1|5962680_5964750_-|AsmA-family-protein
MTRGRKILTWSLASLVLLLAALVVFIATFDWNLIKPTLNEKVSAALNRPFAINGNLAVAWRREEGEEGWRAWIPWPRFSAEDITLGNPEWTAGKTKASEFASLERIEFRLALLPLLWQTIRIPQIKLTQPRADLLRLADGRANWDFDLPASDSDEPSAWQLDIREIGFDKGSVSLDDQRLKTRLEVLVDPLGKPVPFGQLAGKALATGDAANAQDYVFGWKVKGTYKGQALAGSGKVGGMLALQDASKPFPLQAEVSAGSTRAAVVGTLTDPLNLGALDLRLKLSGTSMANLYPLTGITLPDTPAYSTDGHLLARLKEEGGALFRYENFNGKVGASDLHGSLTFVARQPRPKLSGKLTSEQLRFADLGPLIGADSNAEKQKRGQTSRQPGDKVLPVEEFRTERWRDMDADVEFTGKRIVHSDQLPISDLYTHLVLNDGLLRLEPLRFGVAGGKLESDIRLDGGKQPMQSRVKMSARGFKLKQLFPGFAPMQTSFGELNGDASLSGSGNSVAKILGGADGELKMLINDGAISKGLTEIAGLNVGNYLVTKLFGDDEVKINCAAADFGLQKGLMTSRLFVFDTENALVNVDGTVNFANEKLDLDVTPHSKGLRIFSLRSPLYVRGTFAKPDAGVHAGPLVARGAGMIALGVTVGPAASLLALVAPSKSDDNQCTALLQRMRLPAKVPAGKR
>NZ_CP008866.2|WP_003095496.1|5961866_5962679_+|c-di-GMP-binding-multidrug-transporter-transcriptional-regulator-BrlR
MLTIGQLARIFEISTKTLRHYDAIGLFVPARTGSDNGYRYYQPEQIEQLSRILALRRLDVPLEAIDRLKRDGALDDPQRLRHFLQRHQHTLREEISARQRLLAELDRTLATLAHWRIRNMHARIVERPAFSVVGMEYFGSAPGDTIGQLWERFIPREHEIAGKHDPEVSYGICAQQPNGEFHYVAGFEVQEGWPVPEGMVRFQVPAQKYAVFTHKGTAPQIAESFQAIYSHLLAERGLEPKAGVDFEYYDQRFRGPLDPNSQVDLYIPIY
>NZ_CP008866.2|WP_003095492.1|5961312_5961720_-|Rho-termination-factor-N-terminal-domain-containing-protein
MPRGDKSKYSDKQQRKAEHIEESYKAKGVSESEAEARAWATVNKQSGGGERKGGSGRAKSETAKRADRKDSAHRAAQARSGRPANRGSASRGKRQGSTSVSEMTREELMQLARKRDIRGRSTMRKAELIEALSRA
>NZ_CP008866.2|WP_003095488.1|5960924_5961269_+|osmotically-inducible-lipoprotein-OsmE
MYKQSLAALFVMATLAGCASTKVQNPVNYITFRNEPLVKDVEKGMSQQEVLRIGGTPSGTQKRLMKPGSCNSYILNKDGQQQPFYVSFDGSGKVDGSGFLSCSELDRHERDARP
>NZ_CP008866.2|WP_003095483.1|5960296_5960836_+|MOSC-domain-containing-protein
MQQVIAVSLCATHAFSKQVRPAIRLLKGLGVEGDAHHGVTVKHRSRVRQDPTQPNLRQVHLIHEELHDELRASGFAIGPGTMGENITTRGVDLLGLPTGTRLRLGESALVELTGLRNPCSQLDNYQPGLTAAVLGRDEQGNLIRKAGVMAIVLEDGEVRPGDAIDIQLPPLPHRALEKV
>NZ_CP008866.2|WP_003095479.1|5959725_5960142_-|hypothetical-protein
MNILRIPMFVLAMAVSAHGFAATAQQEKMTACNAEATTKALKGDERKAFMSGCLKAGAPAGGKATAQQEKMKSCNADASAKSLKGDERKAFMSSCLKAGGSAKAATQQEKMKTCNADATAKALKGDERKAFMSTCLKK
>NZ_CP008866.2|WP_003095476.1|5958285_5959551_+|Hsp70-family-protein
MNPSTAARALGIDFGTSNSTVGWWRPEVEPLIELEDGKITLPSVVFFNVEERRPVYGRQALGEYLEGYEGRLMRSLKSLLGSKLLKSETTVLGSALPFKDLLGLFIGQLKARGEAAAGQAFDAVVLGRPVFFVDDDPEADREAQDTLVQVANKLGFKEVSFQYEPIAAAFDYERGIQREELVLIVDIGGGTSDFSLVRLAPERRNLAERQDDILATGGVHIGGTDFDKQLSLEGVMPLFGYGSRMKSDAFMPTSYHLNLATWHTINAVYAQKSQLALKNMRYDIVDSTGIDRLFRLIEERAGHWLAMQVEDSKIRLTETERLHLSLERIEAGLGVELTRGLFENAVDGLLERVRNSVAQLLASAGVDPDRVDTVFFTGGSSGIPALRRSVSAMLPNARHVEGNLFGSIGSGLAIEAKKRYG
>NZ_CP008866.2|WP_003121125.1|5957214_5958078_-|oxaloacetate-decarboxylase
MHRASHHELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVASDLTASELSKKYTFPEEYQAWARDYMEVKE
>NZ_CP008866.2|WP_003121124.1|5956508_5957123_+|hypothetical-protein
MMGPFRRLAHLIDQGRQLDAALAGDPFALPAPEDRYSVRQLHGLYPRRHPGLYAPLLGSLALLLGAAPLGLAALRLALPEAPLRPLGWLSALPLLAAWLWLIALLSRGASLGPRLARDASLLLVATGLLLRLASGETSGLVALGGGACAWLLFNSRAMQRYMELVYAQRLYRAQSANRPGSAQRRLANQAAYRERKRRERSGRS
>NZ_CP008866.2|WP_016852186.1|5966240_5967008_-|molybdopterin-dependent-oxidoreductase
MKGPEKKRAKIAIDPSSERQIVDLQRRLLLRGGLSLGALAMLSGCRLQDGDSVDKVLWAMSRWNDRVQAWLFSRTRLAPTFDPSQVASPFPFNAFYPAYNVPEIDLPEYRLQVSGRVRDKRPWSLEQLRRLPQASQVTQLICIEGWSAIGQWSGVPLRTFLELVGADTSAKYVGFKCADRYYSSLDMPSALHPQTLLALEMSGQALPEENGYPLRLRIPTKLGFKNAKHVVEIFVSNSNPGGYWEDQGYNWFSGV
>NZ_CP008866.2|WP_003161310.1|5967004_5967619_-|cytochrome-b/b6-domain-containing-protein
MNRALHAWPVRLCHWLNAYAMACLIGSGWGIYNASPLLDFRFPAWATLGGWLGGSIAWHLAAMWLLLGNGLCYLAHGLSSGHFRRDFLPLSAAGVWRDLRLALGLRLVHEPGRYNAVQRLLYWLVLALGALLVLSGLAIWKPVQLHGLTALFGGFQGARWVHFLAMAGVVGFVVVHLLLVLLVPRTLLPMIIGREWRRGRRSEG
>NZ_CP008866.2|WP_003116116.1|5967672_5968296_-|hypothetical-protein
MLRLKASPALFFGLLLASAASFAAQPPAGMLQPLRGTIQQAADDHLQLKARNGQQLTVRLTDKTAIRAVSLAKPEDIQPDSFIGTAAVPQPDGTLKALEVHVFAPSLRGSGEGHRPWENADGSASTMTNGTVGNLVVSQGRRMTVKYGDGEKTVVVPDDVPIVSLEPGERSLLKPGAKVVLFPQKGADGSLTALAISVGKDGVTPPM
>NZ_CP008866.2|WP_003095515.1|5968433_5969123_+|heavy-metal-response-regulator-transcription-factor
MRILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVVLDVMLPGLDGWQIMEVLRKKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVVREAEQVQLADLQLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASEVWDMNFDSDTNVVDVAIKRLRAKVDNPFPNKLIHTVRGIGYVCEERPCPPAAP
>NZ_CP008866.2|WP_003099516.1|5969101_5970493_+|sensor-histidine-kinase
MPARRSLTLYAALLFAAVAALVVSAVGFYLYRSVEEAMLRRSDVMVAGRVEHFRNLLRDNLTLAELKARPRLFENMLGNEQDILLLGQPGEAPIVAVNPRHERLPSLRVVAAGQALNPSVVHAALTHDGIPMRVLAAEVLVGGREPLQITAAHLLLGETRMLAQYRDRVIAAVLLAFLGTALLGWLVLRHGLRPLRTLAAKAAEIHPTSLDTRLDVAAAPAELQQVAQSFNAMLERLDDGYQRLQQFSADLAHEIRTPIGSLMGHGQVALRQPRSNEEYQALIASNQEELERIARMVESILFLARADDVRAAVERSRLDLGEELRRQAEYFEGLAEERGLSLDVQVSGQLRADPQLFRRALSNLLANAIRYASADSLIEVRGLRRSGEFLLSVENACDRLPAEPLSRLFDRFYRGDAARSDAQSSGLGLAIVQAIMRLHGGRAEASAPAPGRIRFDLAFPAQD
>NZ_CP008866.2|WP_003095519.1|5970483_5971800_-|MFS-transporter
MFSPLVTFPALYTATLLMLAGSGLFTTYIGLRLTQEGAGDLWVGGLMASYYFGLVCGGKFGHKLIASFGHIRSYVACAGIATVTVLLHALVDQLEVWLLLRFITGAVMMNQYMVIESWLNEQAESHQRGKVFAGYMVAVDLGLVLGQGLLALSPTLDYKPLLLVAICFASCLIPLAMTRRVHPAKLVAAPLEVRFFWQRVPQALGTIFIAGLMVGAFYGLAPVYANRNGLDASQSSFFVGMCIVAGFCAQWPLGWLSDRLDRSWLIRGNAVLLCLASIPMWGLVTLPYWLLLANGFVTGMLLFTLYPLAVALANDHVEQPRRVALSAMLLTTYGVGACIGPLVAGALMRHFGPGLFYMLVSGYAVLLVFWVQPKRVTGEHRVDEAPLQHVAMPDTVSPMAATLDPRVEEVPEELVVEAPANIGRSDGEPDAGEKPAQS
>NZ_CP008866.2|WP_016852187.1|5972019_5973132_-|fatty-acid-desaturase
MNRPASPAMRDDRELTPEQLAAFGAELDALRQRTLADLGADDARYIRRVRAAVRVCCWSGRALLMFGWLPPTWLLGSLLLGLGKILENMELGHNVMHGQYDWMNDPEFAGRAYEWDIAGPSDFWRHTHNHIHHTYTNVLGKDDDVGYGVVRLFPEQRWKPFYRWQPLWVTLQALLFQYAVAIQHLRLDKYAKGRLDKAELMPLLRRLRAKLGRQWTKDYLLFPLLGLFAGGFGAVFVGNLLANVLRNLWTFTVIFCGHFTEKAVVFPPSVLEGETRGHWYLRQLRGSSNLEGGPLFHILTGNLSHQIEHHLYPDLPARRYAALSREVREIARRYGQTYNSGRLGRQFLTVLRRIWVYRLPPREPLPAGRG
>NZ_CP008866.2|WP_016852188.1|5973128_5974229_-|ferredoxin-reductase
MALLPLALLTPLLAPLRRLAARGWLREADVDGLLRHAHPLASLNRHYARVEARYWVADDMLALALRTAPGWPPARPGQHIQLLAKRDGVRVGRSYSLTRVVGERLEIAVKRHPDGLLSPWLCEHLAVGQRVELQPAQGDLRWPMQAEAVCLLAAGSGLTPLLGLLREALENGYRGPVLWLHYVRHPGQRAWLGELEALAARHPNLELRWSLTRGARADGCLEGHFQPRHLDGWAADLARSQALACGPAAFVEAVGEQLGARFAGLQTESFSVPRWRSGEAPREVRLRFARSQREVSGDSAASLLEQAEAHGLRPAHGCRQGICASCTCVLLSGCVRDLRSGALCSEPGQPIRLCVSAAHGDLALDL
>NZ_CP008866.2|WP_003107570.1|5974387_5975017_+|TetR-family-transcriptional-regulator
MSSPRAEQKQQTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYRHFSDMDQLGLALVAEVDETFRATLRAVRRNEFELGGLIDASVRIFLDAVGANRSQFLFLAREQYGGSLPIRQAIASLRQRITDDLAADLALLNKMPHLDGAALDVFADLVVKTVFATLPELIDPPAADLPPHLMPAAKITHQLRFIMIGGKHWHGLPG
>NZ_CP008866.2|WP_003095526.1|5975246_5975750_+|urease-accessory-protein-UreE
MLVIHQRLPARSPRWDEELHLTYEARSKSRLRCFAASGEEVGLFLERGQPPLADGDCLEARDGRLVRVVARSERLLHVTCASPLELTRAAYHLGNRHVALQVGDGWLRLLDDYVLKAMLEQLGATVEAIEAPFQPEHGAYGGGHHHSHHGEAEFNYAPRLHQFGVRR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP008866_2	2.1\|1876686\|52\|NZ_CP008866\|CRISPRCasFinder	1876686-1876737	52	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	63791-63842	0	1.0

1. spacer 2.1|1876686|52|NZ_CP008866|CRISPRCasFinder matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 0, identity: 1.0

tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	CRISPR spacer
tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	Protospacer
****************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

651883 : 704661

uncultured_Caudovirales_phage(28.0%)

plate,tRNA,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009875776.1\|651883_652909_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	8.3e-109	58.1
WP_016852408.1\|652987_653557_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003099587.1\|653640_653994_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_003099585.1\|653984_654527_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_003099584.1\|654499_655732_-	multifunctional CCA addition/repair protein	A0A076G5T8	Escherichia_phage	2.6e-77	43.1
WP_016252919.1\|655775_656282_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_003099581.1\|656375_657929_-	SpoVR family protein	NA	NA	NA	NA
WP_003099579.1\|657925_659197_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.2e-09	37.2
WP_003085078.1\|659297_661220_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_003099577.1\|661498_661831_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_003121837.1\|661874_662726_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	1.1e-08	33.3
WP_003085085.1\|662725_663106_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_003161932.1\|663142_663949_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_003459378.1\|664064_665051_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_003109024.1\|665047_666340_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_016852409.1\|666320_669110_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_016852410.1\|670248_670923_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_016852411.1\|670924_671683_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_012613533.1\|671683_672745_-	alpha/beta hydrolase family protein	NA	NA	NA	NA
WP_003085103.1\|675334_675967_+	response regulator transcription factor	NA	NA	NA	NA
WP_003085106.1\|676095_677130_+	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003085109.1\|677363_678473_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-28	34.4
WP_003099539.1\|678528_679575_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003109044.1\|679689_680937_+	ABC transporter permease	NA	NA	NA	NA
WP_003099535.1\|681042_681873_+	ABC transporter permease	NA	NA	NA	NA
WP_003085122.1\|681996_682671_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_003099532.1\|682670_683489_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_016852412.1\|683561_685040_+	anthranilate synthase component I	NA	NA	NA	NA
WP_003121843.1\|685357_685672_-	pyocin activator PrtN family protein	NA	NA	NA	NA
WP_003113202.1\|685771_686542_-	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	1.4e-71	59.1
WP_003085132.1\|686999_687200_+	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
WP_003459419.1\|687247_687607_+	hypothetical protein	NA	NA	NA	NA
WP_003118908.1\|687969_688419_+	hypothetical protein	B5TK61	Pseudomonas_phage	5.0e-26	53.3
WP_003101620.1\|688440_688956_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	1.8e-32	43.4
WP_016852413.1\|688952_689510_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	1.3e-44	70.3
WP_003085143.1\|689662_689989_+	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.2e-30	60.2
WP_003161928.1\|689985_690873_+	bacteriophage protein	S4TNY7	Salmonella_phage	4.1e-88	59.8
WP_003118911.1\|690865_691399_+\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	3.9e-62	64.6
WP_003161927.1\|691400_693506_+\|tail	phage tail protein	Q9ZXK6	Pseudomonas_virus	3.0e-222	52.7
WP_016852415.1\|693513_693954_+	hypothetical protein	NA	NA	NA	NA
WP_003121848.1\|693996_695157_+\|tail	phage tail sheath family protein	Q38068	Phage_PS17	1.2e-188	83.4
WP_016852416.1\|695169_695673_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	1.8e-64	72.8
WP_003085178.1\|695687_696032_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_019416282.1\|696201_698439_+\|tail	phage tail length tape measure protein	NA	NA	NA	NA
WP_003113194.1\|698448_699321_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	2.5e-74	51.4
WP_003101635.1\|699295_699502_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.3e-18	64.2
WP_003113193.1\|699559_700549_+	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	7.5e-107	55.8
WP_003113192.1\|700581_701211_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	1.6e-86	78.0
WP_003121852.1\|701207_701570_+	hypothetical protein	H2BDA0	Pseudomonas_phage	4.2e-15	47.9
WP_003118919.1\|701566_701824_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
WP_003113175.1\|702171_702777_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.6e-75	66.3
WP_003085203.1\|702778_703828_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
WP_003085205.1\|703824_704661_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.1e-70	56.9

DBSCAN-SWA_2

1449857 : 1458886

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003098558.1\|1449857_1450493_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	52.3
WP_016852568.1\|1450538_1451432_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
WP_003113871.1\|1451536_1452541_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
WP_003119354.1\|1452967_1453291_-	ferredoxin family protein	NA	NA	NA	NA
WP_003113873.1\|1453357_1455925_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.2e-24	22.1
WP_003098486.1\|1456050_1457058_-	TolB family protein	NA	NA	NA	NA
WP_003129950.1\|1457205_1457712_+	CinA family protein	B5TK85	Pseudomonas_phage	1.8e-56	76.0
WP_003092260.1\|1457845_1458886_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5

DBSCAN-SWA_3

2528222 : 2535116

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003119978.1\|2528222_2529503_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.8e-97	45.2
WP_003113366.1\|2529504_2530902_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_016852739.1\|2530906_2531881_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003108776.1\|2531968_2532952_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	9.3e-142	74.3
WP_003119979.1\|2532948_2533284_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.5e-38	69.4
WP_003090391.1\|2533280_2533586_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_016562012.1\|2533585_2533945_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.1e-34	61.7
WP_016562011.1\|2533941_2534337_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	3.5e-47	71.3
WP_003090386.1\|2534447_2535116_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1

DBSCAN-SWA_4

2983135 : 3021598

Planktothrix_phage(33.33%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003114503.1\|2983135_2984419_-\|tail	pyoverdine-tailoring periplasmic protein PvdN	NA	NA	NA	NA
WP_003450962.1\|2984441_2985788_-\|tail	pyoverdine-tailoring dipeptidase-like protein PvdM	NA	NA	NA	NA
WP_003163333.1\|2986001_2987648_+	pyoverdine maturation tyrosinase PvdP	NA	NA	NA	NA
WP_004343750.1\|2987696_2989121_-	pyoverdine export/recycling transporter outer membrane subunit OmpQ	NA	NA	NA	NA
WP_003131508.1\|2989126_2991118_-	pyoverdine export/recycling transporter ATP-binding/permease subunit PvdT	G9BWD6	Planktothrix_phage	6.9e-35	39.3
WP_003089547.1\|2991117_2992293_-	pyoverdine export/recycling transporter periplasmic adaptor subunit PvdR	NA	NA	NA	NA
WP_003144014.1\|2992393_2993389_-	FecR family protein	NA	NA	NA	NA
WP_003122684.1\|2993549_2994029_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_016852870.1\|2994145_2995477_+	SidA/IucD/PvdA family monooxygenase	NA	NA	NA	NA
WP_016852871.1\|2995599_2997888_+	acylase	NA	NA	NA	NA
WP_003089535.1\|2998068_2998392_+	transcriptional repressor	NA	NA	NA	NA
WP_003124571.1\|2998433_2999354_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003104946.1\|2999450_3000602_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_003089526.1\|3000678_3000921_-	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_003104944.1\|3001215_3001452_+	hypothetical protein	NA	NA	NA	NA
WP_003089521.1\|3001716_3002187_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_003114512.1\|3002183_3004499_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_023082412.1\|3004915_3006121_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003110901.1\|3006321_3006963_-	response regulator transcription factor	NA	NA	NA	NA
WP_003089513.1\|3007239_3007635_+	DUF4280 domain-containing protein	NA	NA	NA	NA
WP_003104933.1\|3007657_3008194_-	toxin-antitoxin system YwqK family antitoxin	NA	NA	NA	NA
WP_003114515.1\|3008204_3010211_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	7.7e-42	29.5
WP_003104930.1\|3010210_3010399_-	hypothetical protein	NA	NA	NA	NA
WP_003122693.1\|3010558_3011131_-	hypothetical protein	NA	NA	NA	NA
WP_016852873.1\|3011152_3013702_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	5.5e-77	29.4
WP_016852874.1\|3013703_3014720_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_003104926.1\|3014683_3016477_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_003450950.1\|3016460_3016886_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_003089495.1\|3016898_3017396_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_003089494.1\|3017469_3018954_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_016852875.1\|3018976_3019522_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_016852876.1\|3019730_3020207_+	hypothetical protein	NA	NA	NA	NA
WP_023082413.1\|3020266_3021598_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_5

5027129 : 5048984

Cronobacter_phage(20.0%)

integrase,protease,transposase

attL 5018670:5018684|attR 5052081:5052095

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5018670:5018684	attL	NA	NA	NA	NA
WP_020306394.1\|5027129_5027681_+\|transposase	transposase	NA	NA	NA	NA
WP_023093169.1\|5027614_5027992_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_031642515.1\|5028276_5028558_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_008906266.1\|5028593_5029163_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_023093170.1\|5029256_5032106_+	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	3.1e-129	41.1
WP_023093171.1\|5032123_5033554_+	cardiolipin synthase	NA	NA	NA	NA
WP_023093172.1\|5033581_5035465_+\|protease	ATP-dependent zinc metalloprotease FtsH	C7U047	Ostreococcus_tauri_virus	5.1e-104	40.9
WP_023093173.1\|5035461_5035902_+	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	6.4e-10	36.8
WP_031656219.1\|5036056_5038864_+	GGDEF and EAL domain-containing protein	G3MA91	Bacillus_virus	2.3e-28	38.7
WP_023093176.1\|5039047_5039548_+	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_023093177.1\|5039525_5040491_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_023093178.1\|5040515_5041667_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_006217728.1\|5041863_5042259_+\|transposase	transposase	NA	NA	NA	NA
WP_003121550.1\|5042255_5042588_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_010791743.1\|5044223_5044643_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_077446928.1\|5044698_5045799_+	cation transporter	NA	NA	NA	NA
WP_003141085.1\|5045961_5046870_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003123043.1\|5047178_5047526_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_003114155.1\|5047535_5047787_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_016852062.1\|5048000_5048984_-\|integrase	tyrosine-type recombinase/integrase	Q56VN7	Pseudomonas_phage	6.8e-92	52.3
5052081:5052095	attR	NA	NA	NA	NA

DBSCAN-SWA_6

5182589 : 5221298

Pseudomonas_phage(100.0%)

head,protease,integrase,transposase

attL 5188153:5188169|attR 5191740:5191756

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003127781.1\|5182589_5182958_-	hypothetical protein	J9SGX4	Pseudomonas_phage	1.1e-63	100.0
WP_003117363.1\|5182954_5183503_-	hypothetical protein	J9RWB3	Pseudomonas_phage	2.1e-98	100.0
WP_059316985.1\|5183502_5184069_-	regulatory protein GemA	J9SVT5	Pseudomonas_phage	6.0e-101	98.9
WP_016852433.1\|5184055_5184523_-	hypothetical protein	J9STM8	Pseudomonas_phage	8.5e-77	100.0
WP_016852434.1\|5184522_5184714_-	hypothetical protein	J9RW45	Pseudomonas_phage	5.0e-28	100.0
WP_016852435.1\|5184715_5185405_-	DUF2786 domain-containing protein	Q5ZR11	Pseudomonas_phage	4.2e-125	98.7
WP_016852436.1\|5185406_5186030_-	DUF3164 family protein	Q5ZR10	Pseudomonas_phage	1.3e-109	99.5
WP_016852437.1\|5186022_5186223_-	hypothetical protein	J9SVU3	Pseudomonas_phage	6.7e-31	97.0
WP_016852438.1\|5186215_5186749_-	hypothetical protein	J9STN6	Pseudomonas_phage	3.3e-93	98.9
WP_016852439.1\|5186738_5187419_-	hypothetical protein	J9SNC1	Pseudomonas_phage	2.4e-128	98.7
WP_014603990.1\|5187418_5187703_-	hypothetical protein	J9SGZ7	Pseudomonas_phage	3.4e-44	100.0
WP_016852440.1\|5187699_5188041_-	hypothetical protein	J9RWC3	Pseudomonas_phage	3.5e-56	99.1
WP_016852441.1\|5188042_5189209_-	AAA family ATPase	J9SVV1	Pseudomonas_phage	1.0e-216	100.0
5188153:5188169	attL	NA	NA	NA	NA
WP_016852442.1\|5189208_5190993_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	J9SGQ3	Pseudomonas_phage	0.0e+00	98.5
WP_023101705.1\|5190996_5191971_-	hypothetical protein	J9RW58	Pseudomonas_phage	8.9e-153	97.8
5191740:5191756	attR	NA	NA	NA	NA
WP_003142307.1\|5191980_5192295_-	hypothetical protein	J9SUN0	Pseudomonas_phage	2.9e-49	98.1
WP_003142306.1\|5192291_5192552_-	hypothetical protein	J9RWD0	Pseudomonas_phage	1.5e-38	95.3
WP_010791820.1\|5192544_5193033_-	hypothetical protein	J9SNL8	Pseudomonas_phage	2.8e-91	99.4
WP_015649394.1\|5193156_5193381_+	hypothetical protein	NA	NA	NA	NA
WP_003142304.1\|5193665_5193896_-	DNA-binding protein	J9RW65	Pseudomonas_phage	2.5e-37	100.0
WP_157783244.1\|5194080_5194341_+	hypothetical protein	J9SH16	Pseudomonas_phage	1.8e-12	82.6
WP_003094225.1\|5195051_5195309_+	membrane protein	A0A0S4L5C0	Pseudomonas_phage	7.2e-38	100.0
WP_003094227.1\|5195311_5195470_+	hypothetical protein	J9SNF4	Pseudomonas_phage	3.4e-22	100.0
WP_016852445.1\|5195466_5196096_+	transglycosylase SLT domain-containing protein	J9SH25	Pseudomonas_phage	1.9e-119	98.6
WP_015649412.1\|5196297_5196921_+	hypothetical protein	J9SVX5	Pseudomonas_phage	3.6e-99	90.3
WP_003117315.1\|5196920_5197241_+	DUF2730 family protein	J9STR5	Pseudomonas_phage	5.1e-49	100.0
WP_003121465.1\|5197237_5197540_+	hypothetical protein	J9SNG3	Pseudomonas_phage	4.1e-48	99.0
WP_003121466.1\|5197542_5198091_+	DUF3486 family protein	J9SH37	Pseudomonas_phage	6.4e-76	98.9
WP_023118680.1\|5198092_5199766_+	hypothetical protein	J9RWF2	Pseudomonas_phage	0.0e+00	99.3
WP_023118679.1\|5199759_5201334_+	DUF935 domain-containing protein	J9SVY0	Pseudomonas_phage	2.9e-286	95.6
WP_023081740.1\|5201323_5202562_+	hypothetical protein	J9STS2	Pseudomonas_phage	3.1e-243	100.0
WP_023081739.1\|5202563_5203139_+	phage virion morphogenesis protein	J9SNH3	Pseudomonas_phage	1.2e-104	100.0
WP_023118678.1\|5203349_5204459_+\|protease	phage protease	J9SH47	Pseudomonas_phage	5.8e-201	99.2
WP_003121593.1\|5204464_5204869_+	hypothetical protein	J9RWG0	Pseudomonas_phage	1.8e-67	100.0
WP_003127513.1\|5204883_5205780_+\|head	Mu-like prophage major head subunit gpT family protein	J9SVY7	Pseudomonas_phage	1.3e-171	100.0
WP_173655838.1\|5205792_5206227_+	hypothetical protein	J9STT1	Pseudomonas_phage	5.0e-47	95.1
WP_003121492.1\|5206229_5206745_+	DUF1320 domain-containing protein	J9SNI4	Pseudomonas_phage	3.5e-92	100.0
WP_003127511.1\|5206741_5207194_+	hypothetical protein	J9SH57	Pseudomonas_phage	5.5e-81	100.0
WP_003127509.1\|5207190_5207394_+	hypothetical protein	J9RWG5	Pseudomonas_phage	1.7e-29	100.0
WP_010791812.1\|5207400_5208141_+	hypothetical protein	J9SVZ4	Pseudomonas_phage	1.2e-136	100.0
WP_023118676.1\|5208143_5208626_+	hypothetical protein	J9STT8	Pseudomonas_phage	1.3e-80	97.5
WP_052156158.1\|5208580_5208763_-	hypothetical protein	J9SNJ6	Pseudomonas_phage	7.7e-26	96.7
WP_031655896.1\|5208879_5212503_+	tape measure protein	J9SH65	Pseudomonas_phage	0.0e+00	97.3
WP_003129232.1\|5212510_5213467_+	hypothetical protein	J9RWH1	Pseudomonas_phage	2.6e-189	98.4
WP_003126820.1\|5213468_5214392_+	hypothetical protein	A0A0A1IX02	Pseudomonas_phage	1.0e-182	98.4
WP_023118674.1\|5214391_5216095_+	hypothetical protein	A0A0A7DJE1	Pseudomonas_phage	0.0e+00	97.7
WP_023118673.1\|5216084_5216906_+	phage BR0599 family protein	I6PBD5	Pseudomonas_phage	3.6e-155	98.8
WP_003126844.1\|5216914_5217154_+	hypothetical protein	I6P9F0	Pseudomonas_phage	4.4e-37	98.7
WP_023118672.1\|5217150_5217369_+	hypothetical protein	I6P9E8	Pseudomonas_phage	2.7e-33	90.3
WP_003129230.1\|5217358_5219566_+	hypothetical protein	I6PCB1	Pseudomonas_phage	0.0e+00	97.8
WP_031636812.1\|5220709_5221000_+	hypothetical protein	H6V8R3	Pseudomonas_phage	1.5e-44	97.9
WP_003121473.1\|5221073_5221298_+	hypothetical protein	A0A125RNE4	Pseudomonas_phage	5.5e-34	100.0

DBSCAN-SWA_7

5672578 : 5718463

Pseudomonas_phage(25.0%)

integrase,coat,tRNA

attL 5700025:5700041|attR 5720917:5720933

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003099340.1\|5672578_5673127_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_003135089.1\|5673157_5673691_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_016852143.1\|5673690_5674233_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_003121045.1\|5674251_5675040_+	molecular chaperone	NA	NA	NA	NA
WP_016852144.1\|5675056_5677429_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_003099330.1\|5677425_5678373_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_003099328.1\|5678374_5679748_-	MFS transporter	NA	NA	NA	NA
WP_003099324.1\|5680027_5681050_-	ferrochelatase	NA	NA	NA	NA
WP_016852145.1\|5681046_5681964_-	TIGR01777 family protein	NA	NA	NA	NA
WP_003099318.1\|5682377_5683361_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_003099314.1\|5683513_5684470_+	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_003094990.1\|5684479_5685379_+	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	8.5e-17	39.1
WP_003121048.1\|5685375_5686821_+	deoxyribodipyrimidine photo-lyase	A0A167RC11	Powai_lake_megavirus	1.8e-45	27.8
WP_003099307.1\|5686946_5687468_-	acyloxyacyl hydrolase	A0A2H4J0I5	uncultured_Caudovirales_phage	1.4e-59	69.8
WP_003099300.1\|5687601_5688399_-	glutamate racemase	NA	NA	NA	NA
WP_003099296.1\|5688388_5689147_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_003099293.1\|5689140_5689971_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_003099290.1\|5689972_5691055_-	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	5.6e-07	48.3
WP_003095001.1\|5691072_5692341_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_016852147.1\|5692484_5694257_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_016852148.1\|5694261_5694879_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_003099284.1\|5694880_5695729_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_003099281.1\|5695895_5696837_+	ribose-phosphate pyrophosphokinase	A0A1V0SHF7	Hokovirus	4.1e-46	35.4
WP_003099279.1\|5696953_5697568_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_003099278.1\|5697609_5698194_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_003099270.1\|5698234_5699335_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_003161389.1\|5699540_5700752_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B0VMI6	Pseudomonas_phage	1.1e-56	34.4
5700025:5700041	attL	NA	NA	NA	NA
WP_059316994.1\|5700997_5702113_+	Fic family protein	NA	NA	NA	NA
WP_003161386.1\|5707401_5710185_+	DEAD/DEAH box helicase	A0A1B1IUI1	uncultured_Mediterranean_phage	2.2e-39	26.7
WP_003161385.1\|5710209_5714682_+	N-6 DNA methylase	A0A1B1IUC6	uncultured_Mediterranean_phage	5.7e-37	23.7
WP_016852149.1\|5714971_5716615_+	hypothetical protein	NA	NA	NA	NA
WP_003161383.1\|5716664_5717432_+	HNH endonuclease	NA	NA	NA	NA
WP_016852151.1\|5717599_5718463_-\|integrase	integrase domain-containing protein	NA	NA	NA	NA
5720917:5720933	attR	NA	NA	NA	NA

DBSCAN-SWA_8

6153320 : 6213676

Shigella_phage(12.5%)

tRNA,protease,integrase,transposase

attL 6156838:6156853|attR 6212707:6212722

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085990595.1\|6153320_6154470_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.9e-101	65.6
WP_011911882.1\|6155388_6156894_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	8.9e-152	55.1
6156838:6156853	attL	NA	NA	NA	NA
WP_071535013.1\|6157608_6158052_-	hypothetical protein	NA	NA	NA	NA
WP_023118217.1\|6158071_6159943_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_174217331.1\|6159935_6161597_-	hypothetical protein	NA	NA	NA	NA
WP_003246636.1\|6161988_6163110_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_003095790.1\|6163647_6164484_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA
WP_003106479.1\|6164785_6166588_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_003106481.1\|6166880_6168623_+	potassium/proton antiporter	NA	NA	NA	NA
WP_003103675.1\|6168714_6172071_+	mechanosensitive channel MscK	NA	NA	NA	NA
WP_003135708.1\|6172137_6173598_+	YdiU family protein	A0A075BSJ0	Microcystis_phage	3.5e-60	34.3
WP_003103681.1\|6173748_6174723_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_003116143.1\|6174843_6176121_+	bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	A0A0B5JD48	Pandoravirus	1.1e-17	27.8
WP_003116142.1\|6176211_6176664_+	YiiD C-terminal domain-containing protein	NA	NA	NA	NA
WP_003161256.1\|6176776_6177592_+	universal stress protein	NA	NA	NA	NA
WP_016852210.1\|6177613_6178381_-	ParA family protein	NA	NA	NA	NA
WP_016852211.1\|6178471_6179377_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003103690.1\|6179552_6180869_+	MFS transporter	NA	NA	NA	NA
WP_016852212.1\|6180896_6181826_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_003146385.1\|6181937_6183011_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_003103696.1\|6183084_6184065_+	hypothetical protein	NA	NA	NA	NA
WP_003103698.1\|6184186_6185254_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_003095829.1\|6185430_6186864_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_003103700.1\|6186892_6191338_-	glutamate synthase large subunit	NA	NA	NA	NA
WP_003116139.1\|6191562_6193212_-	AAA family ATPase	NA	NA	NA	NA
WP_003107839.1\|6193218_6194325_-	3-dehydroquinate synthase	NA	NA	NA	NA
WP_003095833.1\|6194374_6194893_-	shikimate kinase AroK	NA	NA	NA	NA
WP_003103267.1\|6194904_6197049_-	type 4a pilus secretin PilQ	R9TEZ5	Vibrio_phage	9.8e-19	24.7
WP_003095836.1\|6197102_6197627_-	type 4a pilus biogenesis lipoprotein PilP	NA	NA	NA	NA
WP_003103268.1\|6197623_6198247_-	type 4a pilus biogenesis protein PilO	NA	NA	NA	NA
WP_003095839.1\|6198243_6198840_-	type 4a pilus biogenesis protein PilN	NA	NA	NA	NA
WP_003110888.1\|6198839_6199904_-	pilus assembly protein PilM	NA	NA	NA	NA
WP_003095841.1\|6200088_6202560_+	penicillin-binding protein 1A	NA	NA	NA	NA
WP_003103278.1\|6202664_6203933_-	malic enzyme	NA	NA	NA	NA
WP_003095844.1\|6204035_6205475_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_003103280.1\|6205471_6206239_-	thermonuclease family protein	A0A2P1JU10	Anoxybacillus_phage	3.7e-05	31.1
WP_003095846.1\|6206298_6206514_-	50S ribosomal protein L31	NA	NA	NA	NA
WP_003103282.1\|6206689_6208909_+	primosomal protein N'	NA	NA	NA	NA
WP_003110892.1\|6209158_6210922_+\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	1.1e-84	34.2
WP_003095850.1\|6210956_6211652_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_003095852.1\|6211770_6212304_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_003095854.1\|6212332_6213676_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A173GFL6	Erwinia_phage	1.4e-44	29.4
6212707:6212722	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP008866.2|WP_003158163.1|5506318_5506693_+|hypothetical-protein

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Acr_ID: NZ_CP008866.2|WP_003158160.1|5508434_5508827_+|hypothetical-protein

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Acr_ID: NZ_CP008866.2|WP_003158159.1|5508845_5509169_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP008866.2|WP_003158163.1|5506318_5506693_+|hypothetical-protein

5506318_5506693_+

124 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|27	1.0	1	1.0

NZ_CP008866.2|WP_003158160.1|5508434_5508827_+|hypothetical-protein

5508434_5508827_+

130 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|3	0.4251968503937008	0.9307692307692308	0.8785714285714286

NZ_CP008866.2|WP_003158159.1|5508845_5509169_+|hypothetical-protein

5508845_5509169_+

107 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|15	0.6213592233009708	0.9719626168224299	0.99

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP008866

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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