CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP008859	Pseudomonas aeruginosa strain H5708 chromosome, complete genome	2 crisprs	csa3,DEDDh,cas3,DinG,WYL	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP008859_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008859_1

376919-377032

Orphan

Consensus_repeat	Method
GGCCAAAGAACTGGAGGGCAAGGTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008859_1

>merge|NZ_CP008859|1|376919-377032|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGAGCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGTGGCCAAAGAACTGGAGGGCAAGGTATGA

>NZ_CP008859|1|1|376919-377032|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGA	GCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGT
GGCCAAAGAACTGGAGGGCAAGGTATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008859.2\|WP_003084290.1\|369299_370658_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP008859.2\|WP_003084327.1\|385382_385937_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008859.2\|WP_003112945.1\|386202_386697_+\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
NZ_CP008859.2\|WP_034010023.1\|378075_380463_-\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|225241
NZ_CP008859.2\|WP_003084299.1\|372209_373313_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP008859.2\|WP_003112941.1\|380573_381626_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP008859.2\|WP_010792028.1\|381604_382108_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008859.2\|WP_003084339.1\|386701_387394_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP008859.2\|WP_033871607.1\|364806_365472_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP008859.2\|WP_059297761.1\|383861_384614_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008859.2\|WP_003118141.1\|373731_374829_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP008859.2\|WP_080712170.1\|382822_383842_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP008859.2\|WP_003112937.1\|366851_368228_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP008859.2\|WP_003112938.1\|368506_369259_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
NZ_CP008859.2\|WP_003118762.1\|382212_382824_-\|thiol-disulfide-isomerase	unknown	unknown	gnl\|CDD\|239267
NZ_CP008859.2\|WP_003118764.1\|384662_385361_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|226274
NZ_CP008859.2\|WP_003107781.1\|365534_366596_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP008859.2\|WP_003111119.1\|363769_364648_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP008859.2\|WP_003084303.1\|374883_376038_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_CP008859.2\|WP_003084297.1\|370723_372094_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994

Protein	Function_ID	Function_description	E-value
NZ_CP008859.2\|WP_003084290.1\|369299_370658_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158
NZ_CP008859.2\|WP_003112945.1\|386202_386697_+\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	2.14015e-67
NZ_CP008859.2\|WP_034010023.1\|378075_380463_-\|penicillin-acylase-family-protein	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0
NZ_CP008859.2\|WP_003084299.1\|372209_373313_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP008859.2\|WP_003112941.1\|380573_381626_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.54039e-32
NZ_CP008859.2\|WP_003084339.1\|386701_387394_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.29364e-79
NZ_CP008859.2\|WP_033871607.1\|364806_365472_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	7.82173e-09
NZ_CP008859.2\|WP_003118141.1\|373731_374829_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP008859.2\|WP_080712170.1\|382822_383842_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	9.23025e-56
NZ_CP008859.2\|WP_003112937.1\|366851_368228_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.09186e-161
NZ_CP008859.2\|WP_003112938.1\|368506_369259_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	1.81471e-108
NZ_CP008859.2\|WP_003118762.1\|382212_382824_-\|thiol-disulfide-isomerase	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.00342131
NZ_CP008859.2\|WP_003118764.1\|384662_385361_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	2.81845e-78
NZ_CP008859.2\|WP_003107781.1\|365534_366596_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.00795e-165
NZ_CP008859.2\|WP_003111119.1\|363769_364648_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP008859.2\|WP_003084303.1\|374883_376038_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_CP008859.2\|WP_003084297.1\|370723_372094_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0

>NZ_CP008859.2|WP_003084303.1|374883_376038_+|polyamine-ABC-transporter-ATP-binding-protein
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>NZ_CP008859.2|WP_003118141.1|373731_374829_+|polyamine-ABC-transporter-substrate-binding-protein
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVISKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>NZ_CP008859.2|WP_003084299.1|372209_373313_+|polyamine-ABC-transporter-substrate-binding-protein
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>NZ_CP008859.2|WP_003084297.1|370723_372094_+|aspartate-aminotransferase-family-protein
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>NZ_CP008859.2|WP_003084290.1|369299_370658_+|glutamine-synthetase
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>NZ_CP008859.2|WP_003112938.1|368506_369259_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGESIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACSKRAGQR
>NZ_CP008859.2|WP_003112937.1|366851_368228_-|glutamine-synthetase
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_CP008859.2|WP_003107781.1|365534_366596_-|polyamine-ABC-transporter-substrate-binding-protein
MPRLSALLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>NZ_CP008859.2|WP_033871607.1|364806_365472_-|TetR/AcrR-family-transcriptional-regulator
MQPTSPTRKPRASSQARIAAILDAARGLLADEGIGGLTIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLSGFISDLNR
>NZ_CP008859.2|WP_003111119.1|363769_364648_-|N-carbamoylputrescine-amidase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES
>NZ_CP008859.2|WP_034010023.1|378075_380463_-|penicillin-acylase-family-protein
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLALAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLVAEKVNPDNPNQVWYQGEWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPTNGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWNGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALPRLAGDADSPWWDDRRTERRETRADIVRTAWNASLAHLRSTLGNDPSGWLWGKAHTLTHEHALGQQALLRRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>NZ_CP008859.2|WP_003112941.1|380573_381626_+|AraC-family-transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHDVLTRHAEEQSRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT
>NZ_CP008859.2|WP_010792028.1|381604_382108_-|hypothetical-protein
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASKLIERVDDLQEDRLELRDKYVKRIAENVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>NZ_CP008859.2|WP_003118762.1|382212_382824_-|thiol-disulfide-isomerase
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALRPLAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG
>NZ_CP008859.2|WP_080712170.1|382822_383842_+|alpha/beta-hydrolase
MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLRSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAEIDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>NZ_CP008859.2|WP_059297761.1|383861_384614_-|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALVAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>NZ_CP008859.2|WP_003118764.1|384662_385361_+|2OG-Fe(II)-oxygenase
MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGDLTPAAIGRGDGQVIREGIRGDLTQWLEPGESEACDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>NZ_CP008859.2|WP_003084327.1|385382_385937_-|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGQAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>NZ_CP008859.2|WP_003112945.1|386202_386697_+|DUF523-domain-containing-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGNRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG
>NZ_CP008859.2|WP_003084339.1|386701_387394_-|amino-acid-ABC-transporter-permease
MNSLQKLLEWLANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLILGFSVAVVRVTKVPVVSQIAAVYVSAFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILGIDKGQWEAGLSVGLTWGQTLWNIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIAETFQPLPLYLAAAGIYWLLSALFERVQKALENRLTAPLRR

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Crispr_ID: NZ_CP008859_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008859_2

1877259-1877360

Orphan

Consensus_repeat	Method
GCGGCGGGTATCGGCGGATAACGCC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP008859_2

>merge|NZ_CP008859|2|1877259-1877360|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCCTCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTGCGGCGGGGTATCGGCGGATAACGCC

>NZ_CP008859|2|2|1877259-1877360|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCC	TCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTG
CGGCGGGGTATCGGCGGATAACGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008859.2\|WP_010793238.1\|1874547_1876347_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225457
NZ_CP008859.2\|WP_003109191.1\|1885722_1886058_-\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
NZ_CP008859.2\|WP_003091551.1\|1870894_1871116_-\|DUF2061-domain-containing-protein	unknown	unknown	gnl\|CDD\|225746
NZ_CP008859.2\|WP_003114814.1\|1884067_1884709_+\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|224103
NZ_CP008859.2\|WP_003091533.1\|1883603_1883921_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008859.2\|WP_003116401.1\|1884813_1885713_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP008859.2\|WP_043089791.1\|1879200_1881033_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP008859.2\|WP_014602685.1\|1869390_1870752_-\|alpha/beta-fold-hydrolase	unknown	unknown	unknown
NZ_CP008859.2\|WP_003091540.1\|1878652_1878919_-\|DUF2790-domain-containing-protein	unknown	unknown	gnl\|CDD\|371321
NZ_CP008859.2\|WP_016263235.1\|1881640_1882468_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|131480
NZ_CP008859.2\|WP_003109182.1\|1877078_1877237_+\|DUF3309-domain-containing-protein	unknown	unknown	gnl\|CDD\|378708
NZ_CP008859.2\|WP_003091534.1\|1882474_1883404_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP008859.2\|WP_003091547.1\|1872494_1872806_+\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704
NZ_CP008859.2\|WP_003114810.1\|1876343_1876970_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236391
NZ_CP008859.2\|WP_003114808.1\|1871419_1872277_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270357
NZ_CP008859.2\|WP_003114806.1\|1868583_1869387_-\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|225409
NZ_CP008859.2\|WP_003091546.1\|1872802_1874458_+\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|236495
NZ_CP008859.2\|WP_023091145.1\|1867585_1868443_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP008859.2\|WP_003114812.1\|1881095_1881659_-\|peptidylprolyl-isomerase-A	unknown	unknown	gnl\|CDD\|182824
NZ_CP008859.2\|WP_023116238.1\|1877495_1878620_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225688

Protein	Function_ID	Function_description	E-value
NZ_CP008859.2\|WP_010793238.1\|1874547_1876347_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	0
NZ_CP008859.2\|WP_003109191.1\|1885722_1886058_-\|tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	1.70058e-64
NZ_CP008859.2\|WP_003091551.1\|1870894_1871116_-\|DUF2061-domain-containing-protein	gnl\|CDD\|225746	COG3205, COG3205, Predicted membrane protein [Function unknown].	8.76037e-33
NZ_CP008859.2\|WP_003114814.1\|1884067_1884709_+\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	1.18979e-103
NZ_CP008859.2\|WP_003116401.1\|1884813_1885713_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	1.27099e-12
NZ_CP008859.2\|WP_043089791.1\|1879200_1881033_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	4.9292e-156
NZ_CP008859.2\|WP_003091540.1\|1878652_1878919_-\|DUF2790-domain-containing-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	1.53651e-35
NZ_CP008859.2\|WP_016263235.1\|1881640_1882468_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	2.13225e-42
NZ_CP008859.2\|WP_003109182.1\|1877078_1877237_+\|DUF3309-domain-containing-protein	gnl\|CDD\|378708	pfam11752, DUF3309, Protein of unknown function (DUF3309). This family is conserved in bacteria but its function is not known.	2.8739e-06
NZ_CP008859.2\|WP_003091534.1\|1882474_1883404_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.24343e-39
NZ_CP008859.2\|WP_003091547.1\|1872494_1872806_+\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	2.28294e-48
NZ_CP008859.2\|WP_003114810.1\|1876343_1876970_+\|3'-5'-exonuclease	gnl\|CDD\|236391	PRK09145, PRK09145, 3'-5' exonuclease.	2.00701e-94
NZ_CP008859.2\|WP_003114808.1\|1871419_1872277_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.52249e-117
NZ_CP008859.2\|WP_003114806.1\|1868583_1869387_-\|VacJ-family-lipoprotein	gnl\|CDD\|225409	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane].	6.05055e-101
NZ_CP008859.2\|WP_003091546.1\|1872802_1874458_+\|cation-acetate-symporter	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_CP008859.2\|WP_023116238.1\|1877495_1878620_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225688	COG3146, COG3146, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP008859.2\|WP_003114812.1\|1881095_1881659_-\|peptidylprolyl-isomerase-A	gnl\|CDD\|182824	PRK10903, PRK10903, peptidylprolyl isomerase A.	5.29669e-93
NZ_CP008859.2\|WP_023091145.1\|1867585_1868443_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.3936e-96

>NZ_CP008859.2|WP_003109182.1|1877078_1877237_+|DUF3309-domain-containing-protein
MSLGTILLIILILLLIGGLPVFPHSRNWGYGPSGIIGALLVVLLVLLLLGMI
>NZ_CP008859.2|WP_003114810.1|1876343_1876970_+|3'-5'-exonuclease
MNTMVKLPDSRWPGWRRRLYWWMHEAVEAEEVISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSLDAESIRIHKLRRADLEGQLQLEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISSLYHRKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLLKGPAPKVIH
>NZ_CP008859.2|WP_010793238.1|1874547_1876347_+|cyclic-nucleotide-binding/CBS-domain-containing-protein
MPDSFNFASPPFDQLRPHQRETLKQALSVGYYAPGETLLEAGSAVPGLFVLLKGVVEERGDDGRVFAQYAADDLFDVRGLFSGSSKHRYLAIEESIVYELPASCFHQLCGENPGFARFFQADLAAKRQLAQRDGQNLAEFILTRIAREHLLPALEVEASLSLGDAARLQLSHGADALLVRLERDGPELGIVTRTDLMSAHFRDGRSELEAIGPLAHGPLASVELGDFLFDAMILMTRQRIERVAVTEDGQVIGLLHLTQVLSLFSTHSHVLALRIARADDLGDLRRCAETLDTLIATLAGNGIRLRFIMQLVSALNEQLLERLFELLLPPTLRGRCCLLVMGSEGRGEQLLKTDQDNALVLADDLPQEQALAMMQRFSAALLEFGYPPCPGGVMASRPEWCKPLAAWQAELRGTLLEGKPEQLLRLSILADAWPVAGNLQLFEPLRRQLRGFADGGERWLVDIAAAALQFDTPLTFLGQLKTQDARLDLKRGGIFPIVHGIRTLALREGLETRGTLARIEALKRHKVLEARLADDLSESFELFLQLRLTRQLAGQRDGRQQGLDVSGMSRHDRDMLRYGLHVVKKFKQSVARQFHLETR
>NZ_CP008859.2|WP_003091546.1|1872802_1874458_+|cation-acetate-symporter
MIARLLAALGLAAFAPALWADALTGDVQRQPLNVSAIVMFVAFVGATLCITYWASKRNRSAADYYAAGGRITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQKQIRTLSACGSLVVVAFYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVLYVLFGGMLATTWVQIIKAVLLLSGASFMAIMVLKHVNFDVSTLFSEAIKVHPKGEAIMSPGGLVKDPISAFSLGFALMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAILLVSTNPDFKDATGALIGGNNMAAVHLADAVGGSLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYASVFKGGKANEKDELRVSKMTTVALGVVAIVLGILFEKQNIAFMVGLAFSIAASCNFPVLLLSMYWKKLTTRGAMIGGWMGLITAVGLMVLGPTIWVQILGHEKAIYPYEYPALFSMIVAFVGIWFFSITDKSAAADEERARFFPQFIRSQTGLGASGAVAH
>NZ_CP008859.2|WP_003091547.1|1872494_1872806_+|DUF485-domain-containing-protein
MNDSIYQRIDTNPRFKELVAKRERFAWILSSIMLGLYVIFILLIAFQPQLLGARISPDSSVTWGIPMGVGLILAAFILTGLYVRRANGEFDSLNQEILKEAQQ
>NZ_CP008859.2|WP_003114808.1|1871419_1872277_+|glycine-betaine-ABC-transporter-substrate-binding-protein
MRMMRRLLCWSAGLAMSAAVGMAAAADKPVITIGYVDGWSDSVATTHVAAEVIREKLGYEVKLMPVAAGIMWQGVARGKLDAMLSAWLPGTHGAYYEKMKDKVVNLAINYPDARIGLIVPEYVSANSIADLQAQKDAFGGRVVGIDAGAGVMIKTDEAIKQYGLDYKLVASSGSGMIAELTRAENEKKPVVVTGWIPHWMFAKWKLKFLDDPKKVYGDTEHVDTVANPALEAKAKPVWEFLKKFGWKDGNEVGQVMLAIQEGAKPEDAAKQWVAANPGRVKDWVQ
>NZ_CP008859.2|WP_003091551.1|1870894_1871116_-|DUF2061-domain-containing-protein
MLKTLTFTVMHFIIAFSVAYALTGSIAVGGLVAAVEPLCNSVGFYFHEKIWKRFEKDGAPRPASAHGWLHRHA
>NZ_CP008859.2|WP_014602685.1|1869390_1870752_-|alpha/beta-fold-hydrolase
MPHFLRFAALLGGLALGCANLAQARDVDAASYGYPLTNPFEATIATTPPELRPELPHSEDIDQKDYSLKLRPEREFALPDNFWPVKKLRYRLARQDHAAPLIFIIAGTGAHYASSFPEYLKKLFYQAGYHVVQLSSPTSWDFMASASRFATPGFSSDDADDLYRVMQAVRAQQRDLPVTDYYLTGYSLGALNAAFVSHLDESRQSFNFKKVLLLNPPVNLYTSVSNLDKLVETQVKGITDSRTFYEVVLSKLTRYFRQKGYVDINDAMLYDFQQSKQRLSNEEMAMLIGTSFRFSAADIAFTSDLVNRRGLITPPNYPINEGTSLEPFFKRALQCDFECYMTEQLIPMWRARYDGGSLTQLVNQVSLYKLQDYLHDSPKIAVMHNADDVILGPGDLGFLRRTFGERLTVYPYGGHCGNLNYKVNAQDMLDFFATPAAGQTQVASAALTQQAGN
>NZ_CP008859.2|WP_003114806.1|1868583_1869387_-|VacJ-family-lipoprotein
MSRTAHWMFALLLSAAASAQADEAAAPAELPPRQLDGDGFSRPLDQLKFNPGLDQREFERATLDALNMYDPWESWNRRVYHFNYRFDEWVFLPVVRGYEYVTPHFVRSGVSNFFDNLGDVPNLLNNLAQLKGKAAMETTARLLFNTTFGVLGLWDPATRMGLHKRSEDFGQTLGFYGVGSGPYLVLPILGPSNLRDTGGLVVDYVGEYQVNYLNVPQASGDHPEITALRVVDKRYNTSFRYGQMNSPFEYEKLRYIYTEARKLQIAE
>NZ_CP008859.2|WP_023091145.1|1867585_1868443_-|pirin-family-protein
MTRYRDVLELHTGHPASDGAGVRLTRVIGGPSPERFDPFLMLDQFDTQNPDDYVAGFPSHPHRGFETVTYMLEGRMRHEDHLGNRGLLKPGGVQWMTAAHGIIHSEMPEQVEGAMRGFQLWVNLPAKNKLAPAGYRDIEPEDVPRLETAGGVKVTVIAGRFDDGQAQQIGAVERPDTEPHYYDLQLPAGGRIAPRLPDGHRVLLYVYEGSLTVGGERPVEIATNRLARLSEEGELSLRSEAGARVLVLAGKPLREPIVQYGPFVMNSREEIEQALRDYRDGVLAV
>NZ_CP008859.2|WP_023116238.1|1877495_1878620_+|GNAT-family-N-acetyltransferase
MPIQTLATLADIDAAEWDALLPPAQPFLRHAFLSALEDSHSVTPATGWRPAHRVLRDPQGRLCAALPAYVKAHSYGEYVFDWSWADACQRAGIRYYPKLLVGVPFTPVAGARLLGEDEGLQGLLASLGEEAEASGLSSIHVNFTDARADTLLAARDGWLERLGCQYHWHNRGYRDFQDFLEALSSRKRKQLRKEREQVGGQGIEFEWREGGQLSELEWDFVYLCYANTYLVRDRDPYLSREFFGLLAERMPEAIRVVFAHQRGKPVAMAFSLVAGDTLYGRYWGCLAEFDRLHFETCLYQGLEFAIGAGLARFDAGAQGEHKLIRGFEPVLTRSWHYLAHPGLRDAVAQFLEQERAGVRAYAEEAHGLLPYRQA
>NZ_CP008859.2|WP_003091540.1|1878652_1878919_-|DUF2790-domain-containing-protein
MKLASVVSAVITSLAPMAFAQDVDKDPGRGLPVEEYHYGMQLDVKNVLHRTDNSTRTGVVPVTVVYEDHSGELHKIRFLEWGGSTSNG
>NZ_CP008859.2|WP_043089791.1|1879200_1881033_-|ABC-transporter-ATP-binding-protein
MLYRRFERLIDPFRSASERMPPSEVLRFYVYFLRQVWPVFLALLVVGLIVALIEVALFSYLGRIVDLAQSTPSAEFFRVHANELIWMAVVALVLRPLFNALHDMLVHQSINPSMTNLIRWQNHRYVLKQSLGFFQNDFAGRIAQRIMQTGNSLRDSAVQVVDALWHVLIYTVSALVLFAEADWRLMIPLVLWVFAYVGALAYFVPQVKRRSVEASDSRSKLMGRIVDGYTNITTLKLFAHTRQEEDYAREAIGDQTLKSQRAGRVVTSMDVTITVMNGVLITGTTGLALWLWSQELISVGAIALATGLVIRINNMSGWIMWVVGGIFENIGQVQDGMQTIALPRKVVDREDAQPLRVERGEVEFEHIAFHYGKGSGVIQGLDLKVRPGEKIGLVGPSGAGKSTLVNLLLRLYDLESGRILVDGQDIAGVTQESLRAQIGMVTQDTSLLHRSIRDNLLYGRPGASDAELMEAVRKARADEFIPLLSDAEGLRGFDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVESAIQESLETLMQGKTVIAIAHRLSTIARMDRLVVLDKGHIAESGTHAELLAHGGLYARLWQHQTGGFVGVD
>NZ_CP008859.2|WP_003114812.1|1881095_1881659_-|peptidylprolyl-isomerase-A
MLKRLLIAACTLLFAGSLLAATPAAKPHVLIATSLGEIEVELDPAKAPISVKNFLEYVDSGYYDGTLFHRVIPGFMVQTGGFSAGMQEKKTRAPIKNEADNGLLNERGTLAMARTGVVDSATSQFFINLTDNDFLNHGARDFGYAVFGKVVRGMGVVDQIAKVPTTRRNGFADVPSDDVVILSAKRL
>NZ_CP008859.2|WP_016263235.1|1881640_1882468_-|alpha/beta-fold-hydrolase
MPDFQHRDCTLVYDDHPGPTERAPVLLLHGLGSSARDWEYQLPALLGHYRLLVPDLRGHGRSGKPRGGYSMAGFAEDCAALLDRLGCGPVHLVGISMGGMIGFQLACDRPDLLRSLTIVNSTPEVIPRKPREHLEVAKRKLLSRLLSLRIIGRALGRLLFPKAEQAGLREKIEARWAENDKRAYLASLDAIIGWGVQERLAEIACPTLVISADRDYTPVSLKQAYCERIADARLVVVEDSRHATPMDQPEIFNTTLLGFLADIDKTKEQPCSNVS
>NZ_CP008859.2|WP_003091534.1|1882474_1883404_-|LysR-family-transcriptional-regulator
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSISYTVARMQEQLGVPLLRIDGRKAVLTEAGEVLLRRSRQLVKQAGQLEELAHHMEQGWEPEVRLVVDAAYPTARIVRSLSAFMPQSRGCRVLLREEVLSGVEEALIQGAADLAISGLIIPGHLGADLSVVEFVAVAHPDHPLHRLQRELTHQDLETQMQVVIRDSGRLQPRDHGWLGAEQRWTVGSLATAATFVGNGLGFAWLPRHIIERELQSGQLKPLPLSQGGVRQSRFYLYTNKEKPLGPASQILMEMLKSFANVPLNAPFAAPEPAAE
>NZ_CP008859.2|WP_003091533.1|1883603_1883921_+|hypothetical-protein
MKRLCCFALSLLPLSAFAYPIEVDPQLNGTEVSYSTQDIGRDMGAILLTNLGGQAAECTAVFRNGPETPKVRKGVIQPGQNSNFTAQFGRDIIKLRIKLTCKIAK
>NZ_CP008859.2|WP_003114814.1|1884067_1884709_+|FMN-dependent-NADH-azoreductase
MSRVLVIESSARQRGSVSRLLTAEFISHWKIAHPADRFQVRDLAREPLPHLDELLLGAWTTPCDGHSAAERRALERSNRLTEELRMADVLVLAAPMYNFAIPSSLKSWFDHVLRAGLTFRYAEQGPEGLLQGKRAFVLTARGGIYAGGGLDHQEPYLRQVLGFVGIHDVTFIHAEGMNMGPEFREKGLARARERMRQALETDTSLCVPLPTLR
>NZ_CP008859.2|WP_003116401.1|1884813_1885713_-|DMT-family-transporter
MNRRSALAALHGGALLFGLTGVFGKLASASPGVIVFGRALFAVLALGLFARLAGQAWRALGPAQWLRLALCGLLLAGHWVSFFIAVKTAGVAIATLGFASFPAFTVILEGLLFRERIHLAEGLLVVLVSLGLVLVTPNFDLASGATLGLLWAILSGLLFALLSLANRSNSGQVGPVQAALWQNLVVALCLLPFAVGELPALPALDWLWLALLGVFCTGLAHSLFVASLAVVKARTAALVFALEPVYGIAFAWLLFHETPGPRMFLGGALIILAIVLSARLGARGRKTAVGDERGDPERA
>NZ_CP008859.2|WP_003109191.1|1885722_1886058_-|tRNA-binding-protein
MDIIEWQDFERVELRVGTILSAAPNPKARKPAYVLEVDLGPLGLRTSSAQLTAHYQAEQLVGRQVLCVCNFAPKQIAGVRSEVLVTGVYDSEDKVVLAGFDKPLPNGARLA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP008859_2	2.1\|1877284\|52\|NZ_CP008859\|CRISPRCasFinder	1877284-1877335	52	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	63791-63842	0	1.0

1. spacer 2.1|1877284|52|NZ_CP008859|CRISPRCasFinder matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 0, identity: 1.0

tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	CRISPR spacer
tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	Protospacer
****************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

672433 : 726962

Pseudomonas_phage(53.85%)

tRNA,tail,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003129196.1\|672433_673459_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	8.3e-109	58.1
WP_003085061.1\|673537_674107_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003099587.1\|674190_674544_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_059297723.1\|674534_675077_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_003117955.1\|675049_676282_-	multifunctional CCA addition/repair protein	A0A076G5T8	Escherichia_phage	2.0e-77	43.3
WP_009875777.1\|676325_676832_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_003099581.1\|676925_678479_-	SpoVR family protein	NA	NA	NA	NA
WP_003099579.1\|678475_679747_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.2e-09	37.2
WP_003085078.1\|679847_681770_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_003099577.1\|682048_682381_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_003113213.1\|682424_683276_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	1.1e-08	33.3
WP_003085085.1\|683275_683656_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_003085087.1\|683692_684499_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_003123920.1\|684614_685601_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_003109024.1\|685597_686890_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_049320792.1\|686870_689654_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_003137370.1\|689780_690797_+	phosphotransferase	NA	NA	NA	NA
WP_016852410.1\|690793_691468_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_049320790.1\|691469_692228_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_023100177.1\|692228_693290_-	alpha/beta hydrolase family protein	NA	NA	NA	NA
WP_023100178.1\|693441_695835_+	PAS domain S-box protein	NA	NA	NA	NA
WP_003085103.1\|695880_696513_+	response regulator transcription factor	NA	NA	NA	NA
WP_003085106.1\|696641_697676_+	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_021263059.1\|697909_699019_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-28	34.4
WP_003099539.1\|699074_700121_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014604087.1\|700235_701483_+	ABC transporter permease	NA	NA	NA	NA
WP_003099535.1\|701588_702419_+	ABC transporter permease	NA	NA	NA	NA
WP_003085122.1\|702542_703217_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_003099532.1\|703216_704035_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_003085126.1\|704107_705586_+	anthranilate synthase component I	NA	NA	NA	NA
WP_003113203.1\|705903_706218_-	transcription regulatory protein PrtN	NA	NA	NA	NA
WP_003113202.1\|706317_707088_-	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	1.4e-71	59.1
WP_003085132.1\|707545_707746_+	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
WP_003118907.1\|707793_708153_+	hypothetical protein	NA	NA	NA	NA
WP_073652111.1\|708515_708959_+\|holin	holin	B5TK61	Pseudomonas_phage	4.2e-25	50.9
WP_016263867.1\|708974_709604_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	1.4e-87	78.5
WP_003142810.1\|709600_709963_+	hypothetical protein	NA	NA	NA	NA
WP_003137395.1\|709959_710217_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	6.4e-18	64.6
WP_003113190.1\|710532_711027_+	hypothetical protein	A0A286S1Q8	Klebsiella_phage	1.4e-45	56.5
WP_003113189.1\|711038_711386_+\|tail	phage tail assembly chaperone family protein, TAC	NA	NA	NA	NA
WP_003113188.1\|711415_711670_+	hypothetical protein	A0A2H4PI34	Pseudomonas_phage	6.3e-10	38.4
WP_003113187.1\|711716_713552_+\|tail	phage tail tape measure protein	A0A0S2SYD9	Pseudomonas_phage	1.2e-28	36.2
WP_003113186.1\|713544_713886_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.4e-17	40.0
WP_003118922.1\|713893_714589_+\|tail	phage minor tail protein L	A0A1B0VNE0	Pseudomonas_phage	1.5e-69	50.2
WP_003113184.1\|714591_715362_+	C40 family peptidase	A0A2D1GNP8	Pseudomonas_phage	4.2e-81	55.6
WP_003118924.1\|715416_716019_+\|tail	tail assembly protein	A0A1V0E8A0	Vibrio_phage	4.9e-53	57.3
WP_003118925.1\|716077_719692_+\|tail	phage tail protein	A0A0S2SYC5	Pseudomonas_phage	0.0e+00	55.6
WP_003118927.1\|719927_720716_+	hypothetical protein	NA	NA	NA	NA
WP_003115342.1\|720739_721831_+	hypothetical protein	A0A0S2SY45	Pseudomonas_phage	1.3e-46	36.9
WP_003113180.1\|721830_722166_+	hypothetical protein	NA	NA	NA	NA
WP_003118928.1\|722146_722377_+	hypothetical protein	A0A1W6JT87	Pseudomonas_phage	6.7e-19	65.3
WP_003118929.1\|722472_723525_+	hypothetical protein	A0A0H5AXZ9	Pseudomonas_phage	2.7e-62	52.5
WP_003113177.1\|723524_723827_+	hypothetical protein	A0A0H5B141	Pseudomonas_phage	4.4e-34	71.0
WP_003118930.1\|723823_724054_+	hypothetical protein	C8ZKF3	Pseudomonas_phage	1.4e-24	71.6
WP_003101640.1\|724472_725078_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.0e-75	65.8
WP_003085203.1\|725079_726129_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
WP_003085205.1\|726125_726962_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.1e-70	56.9

DBSCAN-SWA_2

1460565 : 1469593

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003098558.1\|1460565_1461201_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	52.3
WP_003115226.1\|1461246_1462140_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
WP_003113871.1\|1462244_1463249_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
WP_003092272.1\|1463674_1463998_-	ferredoxin family protein	NA	NA	NA	NA
WP_003113873.1\|1464064_1466632_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.2e-24	22.1
WP_003098486.1\|1466757_1467765_-	TolB family protein	NA	NA	NA	NA
WP_003092262.1\|1467912_1468419_+	CinA family protein	B5TK85	Pseudomonas_phage	8.1e-57	76.0
WP_003092260.1\|1468552_1469593_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5

DBSCAN-SWA_3

2556025 : 2562919

uncultured_Caudovirales_phage(85.71%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003097631.1\|2556025_2557306_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.2e-98	45.4
WP_003097630.1\|2557307_2558705_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003097628.1\|2558709_2559684_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003097625.1\|2559771_2560755_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.5e-141	74.0
WP_003119979.1\|2560751_2561087_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.5e-38	69.4
WP_031690242.1\|2561083_2561389_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.0e-22	59.6
WP_016562012.1\|2561388_2561748_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.1e-34	61.7
WP_031690243.1\|2561744_2562140_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.0e-46	70.5
WP_003090386.1\|2562250_2562919_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1

DBSCAN-SWA_4

2636590 : 2687855

Pseudomonas_phage(70.59%)

integrase,tail,holin,terminase

attL 2636449:2636508|attR 2688087:2688167

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2636449:2636508	attL	NA	NA	NA	NA
WP_016562002.1\|2636590_2637619_-\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	2.3e-98	56.9
WP_016562001.1\|2637619_2637832_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_034058649.1\|2639239_2639980_+	hypothetical protein	NA	NA	NA	NA
WP_034058646.1\|2640036_2640306_+	hypothetical protein	NA	NA	NA	NA
WP_059298413.1\|2640302_2642381_-	DNA cytosine methyltransferase	A0A140IES2	Pseudomonas_phage	0.0e+00	84.2
WP_015975412.1\|2642377_2643232_-	DNA adenine methylase	Q5QF26	Pseudomonas_virus	8.0e-166	100.0
WP_059298411.1\|2643376_2645119_-	AAA family ATPase	J7HXJ7	Pseudomonas_phage	1.3e-279	91.9
WP_023105185.1\|2645122_2646094_-	DNA translocase FtsK	H2BD47	Pseudomonas_phage	7.5e-168	96.0
WP_003116739.1\|2646106_2646307_-	hypothetical protein	H2BD48	Pseudomonas_phage	4.3e-30	100.0
WP_014602814.1\|2646313_2647213_-	recombination protein RecT	Q858E1	Salmonella_phage	3.2e-104	73.6
WP_023103086.1\|2647225_2648134_-	YqaJ viral recombinase family protein	Q858E0	Salmonella_phage	3.6e-124	71.6
WP_047568210.1\|2648144_2648354_-	hypothetical protein	NA	NA	NA	NA
WP_014602818.1\|2648350_2648572_-	hypothetical protein	H2BD53	Pseudomonas_phage	4.6e-33	98.6
WP_023104434.1\|2648555_2648708_-	hypothetical protein	J7HXJ0	Pseudomonas_phage	2.6e-11	100.0
WP_003099041.1\|2649207_2649579_-	carbon storage regulator CsrA	J7I430	Pseudomonas_phage	8.5e-64	100.0
WP_033944862.1\|2650496_2650709_-	hypothetical protein	L7TKR9	Pseudomonas_virus	5.2e-34	98.6
WP_080712192.1\|2650800_2650986_-	hypothetical protein	NA	NA	NA	NA
WP_047568215.1\|2651536_2651869_+	DUF1654 domain-containing protein	H2BD60	Pseudomonas_phage	6.5e-47	91.7
WP_124131500.1\|2651918_2652272_-	hypothetical protein	NA	NA	NA	NA
WP_052174268.1\|2652454_2653027_-	S24 family peptidase	H2BD63	Pseudomonas_phage	1.4e-84	90.0
WP_003451709.1\|2653404_2653623_+	helix-turn-helix domain-containing protein	A0A2D1GND2	Pseudomonas_phage	2.9e-19	64.7
WP_047568221.1\|2653654_2654227_+	hypothetical protein	H2BD67	Pseudomonas_phage	3.9e-100	98.4
WP_059298409.1\|2654229_2655192_+	hypothetical protein	A0A2H4JCW9	uncultured_Caudovirales_phage	1.2e-13	47.5
WP_059298638.1\|2655319_2655733_+	hypothetical protein	NA	NA	NA	NA
WP_033992846.1\|2655725_2656169_+	RusA family crossover junction endodeoxyribonuclease	J7I4J7	Pseudomonas_phage	2.8e-77	98.6
WP_059298407.1\|2656197_2657067_+	hypothetical protein	J7HXH6	Pseudomonas_phage	7.2e-162	95.8
WP_023105198.1\|2657203_2657395_-	hypothetical protein	NA	NA	NA	NA
WP_023105199.1\|2657479_2657863_+	hypothetical protein	J7I0R6	Pseudomonas_phage	3.5e-60	98.4
WP_023083724.1\|2657855_2658140_+\|holin	phage holin family protein	H2BD74	Pseudomonas_phage	2.7e-41	98.9
WP_145955294.1\|2658547_2658805_+	hypothetical protein	NA	NA	NA	NA
WP_059298405.1\|2658791_2659058_+	hypothetical protein	NA	NA	NA	NA
WP_023115879.1\|2659340_2659763_+	hypothetical protein	NA	NA	NA	NA
WP_145955295.1\|2659899_2660331_-	hypothetical protein	NA	NA	NA	NA
WP_059298403.1\|2660459_2661056_+\|terminase	terminase small subunit	H2BD75	Pseudomonas_phage	9.9e-46	59.9
WP_059298401.1\|2661042_2662338_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	1.8e-145	58.5
WP_016263341.1\|2662340_2663696_+	DUF4055 domain-containing protein	A0A0H5AWC7	Pseudomonas_phage	9.6e-97	45.8
WP_059298398.1\|2663692_2664772_+	hypothetical protein	A0A0S2SY77	Pseudomonas_phage	1.7e-200	98.1
WP_016263343.1\|2664900_2665644_+	hypothetical protein	A0A0H5AWD1	Pseudomonas_phage	3.8e-87	74.5
WP_010793134.1\|2665653_2666625_+	hypothetical protein	A0A0M3LQL5	Mannheimia_phage	5.4e-110	64.7
WP_003103393.1\|2666666_2667152_+	hypothetical protein	NA	NA	NA	NA
WP_059298396.1\|2667135_2667600_+	hypothetical protein	H9EB35	Vibrio_phage	3.4e-09	35.1
WP_059298394.1\|2667599_2667989_+	hypothetical protein	A0A2H4JAS3	uncultured_Caudovirales_phage	8.2e-33	54.3
WP_003451670.1\|2667992_2668667_+	hypothetical protein	A0A0S2SY81	Pseudomonas_phage	4.6e-116	96.4
WP_003451667.1\|2668663_2669074_+	DUF4128 domain-containing protein	A0A1B0VMI0	Pseudomonas_phage	2.5e-24	43.4
WP_012075337.1\|2669141_2669795_+\|tail	phage tail protein	A0A2H4IZV5	uncultured_Caudovirales_phage	7.7e-60	52.8
WP_059298393.1\|2669804_2670185_+\|tail	phage tail assembly chaperone	A0A1S5R1H9	Pseudomonas_phage	9.4e-26	44.4
WP_012075338.1\|2670247_2670511_+	DUF1799 domain-containing protein	A0A2R3UAE2	Siphoviridae_environmental_samples	1.4e-15	46.0
WP_059298391.1\|2670507_2673732_+\|tail	phage tail tape measure protein	A0A0S2SYD9	Pseudomonas_phage	9.6e-119	37.0
WP_012075340.1\|2673737_2674076_+\|tail	phage tail protein	A0A0S2SYI2	Pseudomonas_phage	3.1e-60	99.1
WP_023911947.1\|2674072_2674822_+\|tail	phage minor tail protein L	A0A0S2SY57	Pseudomonas_phage	8.6e-148	99.2
WP_059298389.1\|2674824_2675580_+	C40 family peptidase	A0A0S2SY75	Pseudomonas_phage	6.5e-143	95.1
WP_023087402.1\|2675726_2675930_-	hypothetical protein	A0A0S2SY70	Pseudomonas_phage	1.1e-17	68.7
WP_023087403.1\|2676132_2677056_+	hypothetical protein	NA	NA	NA	NA
WP_124175358.1\|2677665_2678229_+	hypothetical protein	A0A0S2SYF4	Pseudomonas_phage	1.4e-30	98.5
WP_059298387.1\|2678299_2678884_+\|tail	tail assembly protein	A0A0S2SYS2	Pseudomonas_phage	8.6e-103	99.0
WP_145955296.1\|2678925_2679150_+	hypothetical protein	NA	NA	NA	NA
WP_059298385.1\|2679207_2682870_+\|tail	phage tail protein	A0A0S2SYC5	Pseudomonas_phage	0.0e+00	86.4
WP_004349473.1\|2682866_2683151_+	hypothetical protein	NA	NA	NA	NA
WP_080712191.1\|2683147_2683813_+	hypothetical protein	A0A0S2SYG5	Pseudomonas_phage	5.1e-59	49.3
WP_059298383.1\|2683831_2684626_+	hypothetical protein	A0A0S2SY45	Pseudomonas_phage	1.6e-88	70.8
WP_023087407.1\|2684622_2684937_+	hypothetical protein	A0A0U4K5I1	Pseudomonas_phage	6.3e-52	94.2
WP_059298381.1\|2684996_2685626_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	2.8e-107	93.8
WP_059298379.1\|2685622_2685991_+	hypothetical protein	H2BDD6	Pseudomonas_virus	2.2e-43	82.0
WP_059298636.1\|2686068_2686332_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	5.3e-36	90.7
WP_031652693.1\|2686367_2686634_+	hypothetical protein	L7TP56	Pseudomonas_virus	1.8e-44	98.9
WP_059298377.1\|2686615_2687302_-	SOS response-associated peptidase	A0A2K8I970	Pseudomonas_phage	1.6e-119	88.6
WP_059298375.1\|2687339_2687855_-	hypothetical protein	L7TIE6	Pseudomonas_virus	1.6e-97	96.5
2688087:2688167	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2923475 : 2961947

Planktothrix_phage(33.33%)

tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003122677.1\|2923475_2924759_-\|tail	pyoverdine-tailoring periplasmic protein PvdN	NA	NA	NA	NA
WP_059298330.1\|2924781_2926128_-\|tail	pyoverdine-tailoring dipeptidase-like protein PvdM	NA	NA	NA	NA
WP_059298328.1\|2926343_2927978_+	pyoverdine maturation tyrosinase PvdP	NA	NA	NA	NA
WP_059298326.1\|2928026_2929451_-	pyoverdine export/recycling transporter outer membrane subunit OmpQ	NA	NA	NA	NA
WP_003089549.1\|2929456_2931448_-	pyoverdine export/recycling transporter ATP-binding/permease subunit PvdT	G9BWD6	Planktothrix_phage	6.9e-35	39.3
WP_003089547.1\|2931447_2932623_-	pyoverdine export/recycling transporter periplasmic adaptor subunit PvdR	NA	NA	NA	NA
WP_029528736.1\|2932723_2933719_-	FecR family protein	NA	NA	NA	NA
WP_003103620.1\|2933882_2934362_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_003114509.1\|2934494_2935826_+	L-ornithine N(5)-monooxygenase	NA	NA	NA	NA
WP_080712188.1\|2935948_2938237_+	acylase	NA	NA	NA	NA
WP_003089535.1\|2938417_2938741_+	transcriptional repressor	NA	NA	NA	NA
WP_059298325.1\|2938782_2939703_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003104946.1\|2939799_2940951_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_003089526.1\|2941027_2941270_-	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_003104944.1\|2941564_2941801_+	hypothetical protein	NA	NA	NA	NA
WP_003089521.1\|2942065_2942536_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_059298323.1\|2942532_2944848_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_003115787.1\|2945264_2946470_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003116947.1\|2946670_2947312_-	response regulator transcription factor	NA	NA	NA	NA
WP_003089513.1\|2947588_2947984_+	DUF4280 domain-containing protein	NA	NA	NA	NA
WP_003114514.1\|2948006_2948543_-	toxin-antitoxin system YwqK family antitoxin	NA	NA	NA	NA
WP_003114515.1\|2948553_2950560_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	7.7e-42	29.5
WP_003104930.1\|2950559_2950748_-	hypothetical protein	NA	NA	NA	NA
WP_003122693.1\|2950907_2951480_-	hypothetical protein	NA	NA	NA	NA
WP_003114516.1\|2951501_2954051_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	1.2e-76	29.4
WP_003114517.1\|2954052_2955069_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_003104926.1\|2955032_2956826_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_003122696.1\|2956809_2957235_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_003117302.1\|2957247_2957745_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_003089494.1\|2957818_2959303_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_003089493.1\|2959325_2959871_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_034011584.1\|2960079_2960556_+	hypothetical protein	NA	NA	NA	NA
WP_023088798.1\|2960615_2961947_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_6

5260444 : 5295466

Pseudomonas_phage(61.54%)

integrase,tRNA,coat

attL 5287412:5287471|attR 5300807:5300888

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003099340.1\|5260444_5260993_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_004352709.1\|5261023_5261557_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_004352708.1\|5261556_5262099_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_004352706.1\|5262117_5262906_+	molecular chaperone	NA	NA	NA	NA
WP_059297970.1\|5262922_5265295_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_003099330.1\|5265291_5266239_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_003099328.1\|5266240_5267614_-	MFS transporter	NA	NA	NA	NA
WP_059297967.1\|5267893_5268916_-	ferrochelatase	NA	NA	NA	NA
WP_003114699.1\|5268912_5269830_-	TIGR01777 family protein	NA	NA	NA	NA
WP_003099318.1\|5270243_5271227_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_031805162.1\|5271379_5272336_+	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_031805163.1\|5272345_5273245_+	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	8.5e-17	39.1
WP_034025893.1\|5273241_5274687_+	deoxyribodipyrimidine photo-lyase	A0A167RC11	Powai_lake_megavirus	2.0e-44	28.3
WP_003099307.1\|5274812_5275334_-	acyloxyacyl hydrolase	A0A2H4J0I5	uncultured_Caudovirales_phage	1.4e-59	69.8
WP_034025903.1\|5275467_5276265_-	glutamate racemase	NA	NA	NA	NA
WP_003099296.1\|5276254_5277013_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_003099293.1\|5277006_5277837_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_059297965.1\|5277838_5278921_-	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	5.6e-07	48.3
WP_003095001.1\|5278938_5280207_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_004352693.1\|5280350_5282123_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_003095005.1\|5282127_5282745_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_003099284.1\|5282746_5283595_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_003099281.1\|5283761_5284703_+	ribose-phosphate pyrophosphokinase	A0A1V0SHF7	Hokovirus	4.1e-46	35.4
WP_003099279.1\|5284819_5285434_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_003099278.1\|5285475_5286060_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_003099270.1\|5286100_5287201_+	redox-regulated ATPase YchF	NA	NA	NA	NA
5287412:5287471	attL	NA	NA	NA	NA
WP_023120070.1\|5287520_5287958_-	hypothetical protein	NA	NA	NA	NA
WP_023116767.1\|5288004_5289012_-\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	4.8e-77	47.1
WP_004352686.1\|5289008_5290301_-	hypothetical protein	Q56VN8	Pseudomonas_phage	1.8e-241	92.3
WP_059297962.1\|5290530_5291805_-	zonular occludens toxin family protein	Q56VN9	Pseudomonas_phage	1.8e-201	88.5
WP_003114150.1\|5291808_5292165_-	DUF2523 domain-containing protein	Q56VP0	Pseudomonas_phage	7.9e-59	100.0
WP_079388099.1\|5292169_5293444_-	attachment protein	Q56VP1	Pseudomonas_phage	1.8e-44	86.7
WP_003125072.1\|5293591_5293840_-\|coat	phage coat protein B	Q56VP2	Pseudomonas_phage	2.0e-32	92.7
WP_003115979.1\|5293852_5294104_-	hypothetical protein	NA	NA	NA	NA
WP_025324669.1\|5294225_5294660_-	hypothetical protein	Q56VP5	Pseudomonas_phage	2.1e-61	98.6
WP_059297957.1\|5295175_5295466_-	DUF5447 family protein	Q56VP7	Pseudomonas_phage	2.5e-55	95.8
5300807:5300888	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP008859

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection