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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011864 Enterobacter asburiae strain ATCC 35953 plasmid unnamed 1, complete sequence 2 crisprs NA 0 2 0 0
NZ_CP011865 Enterobacter asburiae strain ATCC 35953 plasmid unnamed 2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP011863 Enterobacter asburiae strain ATCC 35953 chromosome, complete genome 2 crisprs DinG,csa3,cas3,DEDDh,WYL 1 0 10 0
NZ_CP011866 Enterobacter asburiae strain ATCC 35953 plasmid unnamed 3, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP011867 Enterobacter asburiae strain ATCC 35953 plasmid unnamed 4, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_CP011864
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011864_1 91-184 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011864_2 44464-44557 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011864_1 1.1|119|38|NZ_CP011864|CRISPRCasFinder 119-156 38 NZ_CP030875 Raoultella sp. X13 plasmid unnamed, complete sequence 43624-43661 0 1.0
NZ_CP011864_1 1.1|119|38|NZ_CP011864|CRISPRCasFinder 119-156 38 NZ_CP030875 Raoultella sp. X13 plasmid unnamed, complete sequence 141-178 0 1.0
NZ_CP011864_1 1.1|119|38|NZ_CP011864|CRISPRCasFinder 119-156 38 NZ_CP024432 Klebsiella pneumoniae strain DA48896 plasmid p48896_3, complete sequence 45104-45141 0 1.0
NZ_CP011864_1 1.1|119|38|NZ_CP011864|CRISPRCasFinder 119-156 38 NZ_CP024432 Klebsiella pneumoniae strain DA48896 plasmid p48896_3, complete sequence 119-156 0 1.0
NZ_CP011864_1 1.1|119|38|NZ_CP011864|CRISPRCasFinder 119-156 38 NZ_CP011864 Enterobacter asburiae strain ATCC 35953 plasmid unnamed 1, complete sequence 44492-44529 0 1.0
NZ_CP011864_1 1.1|119|38|NZ_CP011864|CRISPRCasFinder 119-156 38 NZ_CP011864 Enterobacter asburiae strain ATCC 35953 plasmid unnamed 1, complete sequence 119-156 0 1.0
NZ_CP011864_2 2.1|44492|38|NZ_CP011864|CRISPRCasFinder 44492-44529 38 NZ_CP030875 Raoultella sp. X13 plasmid unnamed, complete sequence 43624-43661 0 1.0
NZ_CP011864_2 2.1|44492|38|NZ_CP011864|CRISPRCasFinder 44492-44529 38 NZ_CP030875 Raoultella sp. X13 plasmid unnamed, complete sequence 141-178 0 1.0
NZ_CP011864_2 2.1|44492|38|NZ_CP011864|CRISPRCasFinder 44492-44529 38 NZ_CP024432 Klebsiella pneumoniae strain DA48896 plasmid p48896_3, complete sequence 45104-45141 0 1.0
NZ_CP011864_2 2.1|44492|38|NZ_CP011864|CRISPRCasFinder 44492-44529 38 NZ_CP024432 Klebsiella pneumoniae strain DA48896 plasmid p48896_3, complete sequence 119-156 0 1.0
NZ_CP011864_2 2.1|44492|38|NZ_CP011864|CRISPRCasFinder 44492-44529 38 NZ_CP011864 Enterobacter asburiae strain ATCC 35953 plasmid unnamed 1, complete sequence 44492-44529 0 1.0
NZ_CP011864_2 2.1|44492|38|NZ_CP011864|CRISPRCasFinder 44492-44529 38 NZ_CP011864 Enterobacter asburiae strain ATCC 35953 plasmid unnamed 1, complete sequence 119-156 0 1.0

1. spacer 1.1|119|38|NZ_CP011864|CRISPRCasFinder matches to NZ_CP030875 (Raoultella sp. X13 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

agctatattttttggctgtccagtatgtgtgtctggta	CRISPR spacer
agctatattttttggctgtccagtatgtgtgtctggta	Protospacer
**************************************

2. spacer 1.1|119|38|NZ_CP011864|CRISPRCasFinder matches to NZ_CP030875 (Raoultella sp. X13 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

agctatattttttggctgtccagtatgtgtgtctggta	CRISPR spacer
agctatattttttggctgtccagtatgtgtgtctggta	Protospacer
**************************************

3. spacer 1.1|119|38|NZ_CP011864|CRISPRCasFinder matches to NZ_CP024432 (Klebsiella pneumoniae strain DA48896 plasmid p48896_3, complete sequence) position: , mismatch: 0, identity: 1.0

agctatattttttggctgtccagtatgtgtgtctggta	CRISPR spacer
agctatattttttggctgtccagtatgtgtgtctggta	Protospacer
**************************************

4. spacer 1.1|119|38|NZ_CP011864|CRISPRCasFinder matches to NZ_CP024432 (Klebsiella pneumoniae strain DA48896 plasmid p48896_3, complete sequence) position: , mismatch: 0, identity: 1.0

agctatattttttggctgtccagtatgtgtgtctggta	CRISPR spacer
agctatattttttggctgtccagtatgtgtgtctggta	Protospacer
**************************************

5. spacer 1.1|119|38|NZ_CP011864|CRISPRCasFinder matches to NZ_CP011864 (Enterobacter asburiae strain ATCC 35953 plasmid unnamed 1, complete sequence) position: , mismatch: 0, identity: 1.0

agctatattttttggctgtccagtatgtgtgtctggta	CRISPR spacer
agctatattttttggctgtccagtatgtgtgtctggta	Protospacer
**************************************

6. spacer 1.1|119|38|NZ_CP011864|CRISPRCasFinder matches to NZ_CP011864 (Enterobacter asburiae strain ATCC 35953 plasmid unnamed 1, complete sequence) position: , mismatch: 0, identity: 1.0

agctatattttttggctgtccagtatgtgtgtctggta	CRISPR spacer
agctatattttttggctgtccagtatgtgtgtctggta	Protospacer
**************************************

7. spacer 2.1|44492|38|NZ_CP011864|CRISPRCasFinder matches to NZ_CP030875 (Raoultella sp. X13 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

taccagacacacatactggacagccaaaaaatatagct	CRISPR spacer
taccagacacacatactggacagccaaaaaatatagct	Protospacer
**************************************

8. spacer 2.1|44492|38|NZ_CP011864|CRISPRCasFinder matches to NZ_CP030875 (Raoultella sp. X13 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

taccagacacacatactggacagccaaaaaatatagct	CRISPR spacer
taccagacacacatactggacagccaaaaaatatagct	Protospacer
**************************************

9. spacer 2.1|44492|38|NZ_CP011864|CRISPRCasFinder matches to NZ_CP024432 (Klebsiella pneumoniae strain DA48896 plasmid p48896_3, complete sequence) position: , mismatch: 0, identity: 1.0

taccagacacacatactggacagccaaaaaatatagct	CRISPR spacer
taccagacacacatactggacagccaaaaaatatagct	Protospacer
**************************************

10. spacer 2.1|44492|38|NZ_CP011864|CRISPRCasFinder matches to NZ_CP024432 (Klebsiella pneumoniae strain DA48896 plasmid p48896_3, complete sequence) position: , mismatch: 0, identity: 1.0

taccagacacacatactggacagccaaaaaatatagct	CRISPR spacer
taccagacacacatactggacagccaaaaaatatagct	Protospacer
**************************************

11. spacer 2.1|44492|38|NZ_CP011864|CRISPRCasFinder matches to NZ_CP011864 (Enterobacter asburiae strain ATCC 35953 plasmid unnamed 1, complete sequence) position: , mismatch: 0, identity: 1.0

taccagacacacatactggacagccaaaaaatatagct	CRISPR spacer
taccagacacacatactggacagccaaaaaatatagct	Protospacer
**************************************

12. spacer 2.1|44492|38|NZ_CP011864|CRISPRCasFinder matches to NZ_CP011864 (Enterobacter asburiae strain ATCC 35953 plasmid unnamed 1, complete sequence) position: , mismatch: 0, identity: 1.0

taccagacacacatactggacagccaaaaaatatagct	CRISPR spacer
taccagacacacatactggacagccaaaaaatatagct	Protospacer
**************************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP011867
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2186 : 12791 13 Burkholderia_virus(45.45%) plate,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP011863
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011863_1 447935-448150 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011863_2 1076918-1077022 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP011863_1 1.2|448034|16|NZ_CP011863|PILER-CR 448034-448049 16 NZ_CP011863.1 447753-447768 0 1.0
NZ_CP011863_1 1.2|448034|16|NZ_CP011863|PILER-CR 448034-448049 16 NZ_CP011863.1 448151-448166 0 1.0
NZ_CP011863_1 1.2|448034|16|NZ_CP011863|PILER-CR 448034-448049 16 NZ_CP011863.1 448258-448273 0 1.0
NZ_CP011863_1 1.2|448034|16|NZ_CP011863|PILER-CR 448034-448049 16 NZ_CP011863.1 2505623-2505638 0 1.0

1. spacer 1.2|448034|16|NZ_CP011863|PILER-CR matches to position: 447753-447768, mismatch: 0, identity: 1.0

gttgacttttaatcaa	CRISPR spacer
gttgacttttaatcaa	Protospacer
****************

2. spacer 1.2|448034|16|NZ_CP011863|PILER-CR matches to position: 448151-448166, mismatch: 0, identity: 1.0

gttgacttttaatcaa	CRISPR spacer
gttgacttttaatcaa	Protospacer
****************

3. spacer 1.2|448034|16|NZ_CP011863|PILER-CR matches to position: 448258-448273, mismatch: 0, identity: 1.0

gttgacttttaatcaa	CRISPR spacer
gttgacttttaatcaa	Protospacer
****************

4. spacer 1.2|448034|16|NZ_CP011863|PILER-CR matches to position: 2505623-2505638, mismatch: 0, identity: 1.0

gttgacttttaatcaa	CRISPR spacer
gttgacttttaatcaa	Protospacer
****************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 330483 : 363676 46 Pseudomonas_phage(31.25%) head,transposase,tail,plate,protease,integrase,capsid,terminase attL 321634:321648|attR 335098:335112
DBSCAN-SWA_2 1062356 : 1169668 127 Salmonella_phage(33.8%) head,holin,transposase,tail,protease,lysis,integrase,terminase attL 1058555:1058581|attR 1136089:1136115
DBSCAN-SWA_3 1205140 : 1215213 9 Oenococcus_phage(16.67%) NA NA
DBSCAN-SWA_4 1811409 : 1889037 92 Salmonella_phage(32.65%) head,holin,tRNA,portal,tail,plate,protease,integrase,capsid,terminase attL 1847641:1847671|attR 1886826:1886856
DBSCAN-SWA_5 1981071 : 2036022 61 uncultured_Caudovirales_phage(25.0%) head,tail,transposase,integrase attL 2006331:2006346|attR 2039716:2039731
DBSCAN-SWA_6 2247245 : 2347671 104 Enterobacteria_phage(40.68%) head,transposase,tRNA,portal,tail,protease,lysis,integrase,capsid,terminase attL 2238699:2238731|attR 2352446:2352478
DBSCAN-SWA_7 2936029 : 2998970 58 Escherichia_phage(28.57%) protease,coat,transposase NA
DBSCAN-SWA_8 4134437 : 4196777 64 Erwinia_phage(35.29%) tail,plate,holin,tRNA NA
DBSCAN-SWA_9 4344005 : 4454677 111 Burkholderia_virus(28.85%) holin,transposase,tRNA,tail,plate,integrase attL 4343954:4343990|attR 4427932:4427968
DBSCAN-SWA_10 4689108 : 4703748 18 Bacteriophage(38.46%) integrase attL 4688820:4688834|attR 4703455:4703469
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage