CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013386	Burkholderia sp. BDU6 chromosome 1, complete sequence	2 crisprs	cas3,csa3,DinG,DEDDh,PrimPol	1	2	5	0
NZ_CP013387	Burkholderia sp. BDU6 chromosome 2, complete sequence	1 crisprs	RT,DinG,csa3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013386_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013386_1

2152202-2152368

Orphan

Consensus_repeat	Method
GCGGCGGCTCGACTTCCGGCGGCGGC	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP013386_1

>merge|NZ_CP013386|1|2152202-2152368|CRISPRCasFinder
TCGACGGCTCGGGCTCCAGTAGCGGCAACGCAATTTCCACGACGGGCGACGGTTCGGGTTCGGGCGGCACGAGCGGCTCGGGTTCGAGCGGCGGCTCGACTTCCGGCGGCGGCTCGACTTCCGGCGGCGGCTCGACTTCCGGCGGCGGCTCGACTTCCGGCGGCGGC

>NZ_CP013386|1|1|2152202-2152368|CRISPRCasFinder
TCGACGGCTCGGGCTCCAGTAGCGGC	AACGCAATTTCCACGACGG
GCGACGGTTCGGGTTCGGGCGGCACG	AGCGGCTCGGGTTCGA
GCGGCGGCTCGACTTCCGGCGGCGGC	TCGACTTCCGGCGGCGGCTCGACTTCCG
GCGGCGGCTCGACTTCCGGCGGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013386.1\|WP_059597775.1\|2142117_2143116_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227343
NZ_CP013386.1\|WP_059469551.1\|2160965_2162237_-\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
NZ_CP013386.1\|WP_059597776.1\|2144168_2145185_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227300
NZ_CP013386.1\|WP_059469553.1\|2165716_2167543_-\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NZ_CP013386.1\|WP_059469549.1\|2157630_2158038_-\|transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP013386.1\|WP_059469548.1\|2155143_2156823_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP013386.1\|WP_059597779.1\|2153708_2155004_+\|collagen-like-triple-helix-repeat-containing-protein	unknown	unknown	gnl\|CDD\|374271
NZ_CP013386.1\|WP_059469554.1\|2167833_2168331_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP013386.1\|WP_059469544.1\|2150671_2151172_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227295
NZ_CP013386.1\|WP_059469543.1\|2150207_2150675_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|377921
NZ_CP013386.1\|WP_162498962.1\|2151254_2151452_-\|Flp-family-type-IVb-pilin	unknown	unknown	gnl\|CDD\|226366
NZ_CP013386.1\|WP_059469541.1\|2147820_2149146_-\|type-II-and-III-secretion-system-protein-family-protein	unknown	unknown	gnl\|CDD\|227299
NZ_CP013386.1\|WP_059597847.1\|2143143_2144163_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224975
NZ_CP013386.1\|WP_059469582.1\|2158234_2159332_-\|cell-division-protein-ZapE	unknown	unknown	gnl\|CDD\|224402
NZ_CP013386.1\|WP_059597780.1\|2159438_2160869_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235779
NZ_CP013386.1\|WP_059469539.1\|2145177_2146518_-\|CpaF-family-protein	unknown	unknown	gnl\|CDD\|227297
NZ_CP013386.1\|WP_059597777.1\|2146521_2147760_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|349765
NZ_CP013386.1\|WP_010104067.1\|2157041_2157506_+\|DUF2147-domain-containing-protein	unknown	unknown	gnl\|CDD\|378304
NZ_CP013386.1\|WP_059469542.1\|2149209_2150121_-\|Flp-pilus-assembly-protein-CpaB	unknown	unknown	gnl\|CDD\|274472
NZ_CP013386.1\|WP_059597781.1\|2162370_2165235_-\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499

Protein	Function_ID	Function_description	E-value
NZ_CP013386.1\|WP_059597775.1\|2142117_2143116_-\|hypothetical-protein	gnl\|CDD\|227343	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].	7.81263e-16
NZ_CP013386.1\|WP_059469551.1\|2160965_2162237_-\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
NZ_CP013386.1\|WP_059597776.1\|2144168_2145185_-\|pilus-assembly-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	9.34897e-40
NZ_CP013386.1\|WP_059469553.1\|2165716_2167543_-\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NZ_CP013386.1\|WP_059469549.1\|2157630_2158038_-\|transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	1.97483e-23
NZ_CP013386.1\|WP_059469548.1\|2155143_2156823_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	1.50885e-67
NZ_CP013386.1\|WP_059597779.1\|2153708_2155004_+\|collagen-like-triple-helix-repeat-containing-protein	gnl\|CDD\|374271	pfam15984, Collagen_mid, Bacterial collagen, middle region. Collagen_mid is the conserved central region of bacterial collagen triple helix repeat proteins.	2.20447e-38
NZ_CP013386.1\|WP_059469554.1\|2167833_2168331_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	9.11782e-23
NZ_CP013386.1\|WP_059469544.1\|2150671_2151172_-\|hypothetical-protein	gnl\|CDD\|227295	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	1.29004e-11
NZ_CP013386.1\|WP_059469543.1\|2150207_2150675_-\|pilus-assembly-protein	gnl\|CDD\|377921	pfam07811, TadE, TadE-like protein. The members of this family are similar to a region of the protein product of the bacterial tadE locus. In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria. All tad loci but TadA have putative transmembrane regions, and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.	1.50691e-10
NZ_CP013386.1\|WP_162498962.1\|2151254_2151452_-\|Flp-family-type-IVb-pilin	gnl\|CDD\|226366	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion].	3.02633e-12
NZ_CP013386.1\|WP_059469541.1\|2147820_2149146_-\|type-II-and-III-secretion-system-protein-family-protein	gnl\|CDD\|227299	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion].	1.84841e-97
NZ_CP013386.1\|WP_059597847.1\|2143143_2144163_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	1.38673e-14
NZ_CP013386.1\|WP_059469582.1\|2158234_2159332_-\|cell-division-protein-ZapE	gnl\|CDD\|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	4.18993e-176
NZ_CP013386.1\|WP_059597780.1\|2159438_2160869_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235779	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.	0
NZ_CP013386.1\|WP_059469539.1\|2145177_2146518_-\|CpaF-family-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	3.88461e-157
NZ_CP013386.1\|WP_059597777.1\|2146521_2147760_-\|fimbrial-protein	gnl\|CDD\|349765	cd03111, CpaE-like, pilus assembly ATPase CpaE. This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.	2.9771e-74
NZ_CP013386.1\|WP_010104067.1\|2157041_2157506_+\|DUF2147-domain-containing-protein	gnl\|CDD\|378304	pfam09917, DUF2147, Uncharacterized protein conserved in bacteria (DUF2147). This domain, found in various hypothetical prokaryotic proteins, has no known function.	8.63873e-38
NZ_CP013386.1\|WP_059469542.1\|2149209_2150121_-\|Flp-pilus-assembly-protein-CpaB	gnl\|CDD\|274472	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.	3.29507e-53
NZ_CP013386.1\|WP_059597781.1\|2162370_2165235_-\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0

>NZ_CP013386.1|WP_162498962.1|2151254_2151452_-|Flp-family-type-IVb-pilin
MRTQGTRINMKQLMNRFLTEEAGVTAIEYGLIAGLIAVAIATTVGTLGTDLSNLFSTIASKLPAA
>NZ_CP013386.1|WP_059469544.1|2150671_2151172_-|hypothetical-protein
MVHLFSIGFFFAWTAAVAIADCRDRRIPNELVFVGLAAVIIFTVCRQNPFETTLAGALIGGVVGLVSLFPFFALRVMGAADVKVFAVLGAWCGLSVLPWLWIVASIAAGIHSLGLMLLSRTSFGTLGRHGAPVFALGARRSAPYAAFLAAPAAAWLAYLVHTGGTR
>NZ_CP013386.1|WP_059469543.1|2150207_2150675_-|pilus-assembly-protein
MKHALGQFRPRRFQRGATAIEFAILFPVFFMVLYGIVTYGMIFAAQQSLTLAATEGARAALNYQVAQTQSAALGLRAAAACTAASNLTGWLTGATCSTSQNFTCSYDATMYCIQVTVTYPYAANPLVPTVALFDAVLPTTLTSQATVQINPTNII
>NZ_CP013386.1|WP_059469542.1|2149209_2150121_-|Flp-pilus-assembly-protein-CpaB
MANHLTKIIAGLLIGIAILLGIYAWLLGRKPAPAAPSAATAVATAVVPVVVATRALPAGQPIPADALKVQQMPAPIAGAFPNPTLVTGRIPASDIVAQAPVLESELMSGLADQIAPGERAVAVKVDDTNAVGNRLRPGNFVDVFVNMKREGSFGTTGSEISQSQARLLLSRVRVLSFGDATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDVAAQTVAVRALGGAGPSNQAAAGLVLSELSGSGGAHAPAPRAAAPRGAQVAAAPRAGGSIEVIRGGRAETVAY
>NZ_CP013386.1|WP_059469541.1|2147820_2149146_-|type-II-and-III-secretion-system-protein-family-protein
MKNRLIALAMAFGVLLSFAARAAEMGAIELATGAQRQISVGRNVQRVAVGDPSVADVLVAKGGRGSVLLVAKAAGSTSLMVWERGRDEPAVYTVNVVSGAARALLDGGSPSVKAYGGTAVMSGSAATLDAHARALALGKGMAGKDGGVVDASTVGGKNVVQVDVRVVEFSRSVLKQAGLNFFKQNNGFTFGSFAPSGLASVTGGGTPSMSVSANIPIASAFNLVVGSATRGLFADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRETTSNVDKVPFLGDLPVIGTFFKHLSYQQNDKELVIIATPHLVAPIAKNASLPATPGELSEQRDGPVWRSYLGGALSPDAGPGFSK
>NZ_CP013386.1|WP_059597777.1|2146521_2147760_-|fimbrial-protein
MNARAQSLAEPAVTDYFVCASPLGEHVDWLAQTLVSAGAVEAAPLEPTALAQRIAGLNPVLVFVDFSGGHAQAASAAAAAVRLSHPGLPIVALGSIAEPESALAALRAGVHDFVDFSAPAEDALRITRGLLDHVGEQPSRHGKLIALLGARAGMGASTLAANLSVLLQKRSAAQGRQTALVDLGLPAGDGALYLNTRCEFDFVEAVRNLRRFDRTFVNTALARHSSGVALTSLPPNLAGLRDVSYASCVGLLNRLRAFFDYQIIDLGGFSNRDFVAQTACAVDESWLLCDQGVASVVSAVELLDSLRDAGVDTGNVRLVVNQYDPALGLSPAQIAERLGLSLAVTLPSRRVPIGHAANQGKLIVDVAERDPYVRALEPLVERVTGGTGAAASRTASGLSALKRFIQPTSKRS
>NZ_CP013386.1|WP_059469539.1|2145177_2146518_-|CpaF-family-protein
MAHDIQFADGATPFSQTQQFHDIKNAAHEHLLTRIEELGAEFGRWSRQAINQFVDLEIDSFVRLRRIPLNENEVRAIAEALTKELAGFGPIEDLLADPHVEDILINGYSDVYVSKHGILTKLPVRFTDNAHLLRIVRRILAPIGRRLDESNPMVDARLPDGGRVNVVIEPLSIDGPVVSIRKFRKDPLKPADLLANGTFDDEIATLLEAAVAARCNILVSGGTSSGKTSLLNALAFHIPEAERVVTIEDTAELSLNHPHVVRLESRPGGFDGTGVVSIRDLLRNTLRMRPDRIIVGEVRGGEVLEMMQAMNTGHDGSMGTIHASSPRECLYRLEMLAGFAGFQGTESSLRRQISNAVDFIVQIGRLSNGRRRILSVTEVTGLSDNIIATQELYRYEPRVNADGDEIDAWESLGIHPHSPKLARFRQMLAGGGRGGEPFGRGGGFNV
>NZ_CP013386.1|WP_059597776.1|2144168_2145185_-|pilus-assembly-protein
MSSAALFALALALLCAAAALALWRRGEATKERAHAARYIDSRLEPGARPGAQPKAPLAGESTRAAASASAAGAAGGAPGAKPADGFGFARWRERAADAWLNVSNRAGVPEIRTPLILLVAATLVATLWTGLRGGLLAAVATLVAGATLVLFWLVSRMQKRRLQIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVEIDRAMVYIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQVGGGYWLYRLARLR
>NZ_CP013386.1|WP_059597847.1|2143143_2144163_-|type-II-secretion-system-F-family-protein
MDSSRLGAIALALGALGVLMLAVLAIMRIVLTQRTGRALADALDQRAAALEAAAARTTAGAAAATGVPRPPAADAAPAERQPRFATLLDRAGKFGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIASGIALPAAVAIVGGETAGTHLSAWVALSVIIGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMIVTLLPALFIVTAGPGMLAVTHALTAARR
>NZ_CP013386.1|WP_059597775.1|2142117_2143116_-|hypothetical-protein
MRRSSFSPMTTTTAALAMLALSLAACGSFKESGYGIGAQAERAALMQAAADKNAPPDTPGMYLGLIGRMQSQGLYYASLAHIDAYEKQYGASPDTVLLRADALRATDQPAASTVAYRQLLNTPLAARGYRGLGLLAGASGDFDAASQALAQAATLAPTDSLTLSDLAYARMRGGDVTGARVPLMKAAELDQNNPKILSNVALFLLATGQTRDALGLMNQLKLAPAVRTEIRNDATKIAAASRARQRALARPGAPNATGSASTTGGANMAGIGAGALGVIGATGATGAMGAMGAMGAAGAKGATAVAGAPAPVASASSSGFEPTVPLLQRFSQ
>NZ_CP013386.1|WP_059597779.1|2153708_2155004_+|collagen-like-triple-helix-repeat-containing-protein
MNQQRFVPSSALAAWRVPLTALATACVLAACGGSDIAAPPSAGDSGSGGKTTPTNPNNPTPTATGTSGVVNTLGKTATDLGNTIGSTSVPGLGSGVTQGVGATVGSTGGILNAAADAVSNGLGQIGSTQNPVGTTVAGLGNVVSAASNTVQGLSQTVQAVGTGPLAPLSPVTTPVAGALATAANGVNAAGTMLGNALSTGPVQQITQPISSAVTPLVITAGQVTQTVGTTTGVGQPVSGLLQQVGGAISSAGHQIAGTSSQPLVGDVGQLVSSVGNTVTNTGGLVNPAAPNGAAPIPGLITSLVGGSTATVATGSGSGSTLSNPLSGVLSSLGGGALGGSATSGGASNPLAPVTSLVSGGTGGSTNPLAPVTGLLNTVTGALTGATGSSGGTNPLAPITSLTGSATSSTGSSTGLLAPVTNTLGTLGSISK
>NZ_CP013386.1|WP_059469548.1|2155143_2156823_+|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MKSRHESWMLLLALVAAAGAAHAQSRSGGNPLESLPQINTPQRPSVTVQVAPQEVQVQALLARHLTPTSFQVEGVKSIPFEEISQRFTPLVGKDITIGQLIEMANGVTKLYQARGYALSFAFIPAQTFEGGVVRVTVVEGYVANVKITGRPGAMEPKVRAIAAHIMDDRPLRRATFERYVNTFGLLPGVTVKANVPPPQNTDGATTLELNVDRKPFNVSAGLNTNNPGLQGLFTVTENGLTSLGEQMSISALFPKGPNNQTYVSFNGAVPIGSNGLVTRLDASHYRGNPSVDQTVLPNVQRTVINDKLGLSASYPLMLSNQRSLLGTVSGYASHSEDRYQNQITGAMIGTRSQVRVLQMQLDYTSVQPKQVQKLSFNVAKAFDILGASKSGITNIPGVTATNPASTTFVRTGATFVQTNEWPFKIGSTVQLTGQYSPDSLPTTEQISFGAQRFALGYQPGETSGDSGWGASLELNRAFAPGFTYLKNITPYVVYDMARVYLHSGTPVPRRLSSVGLGVRLTDSRFYNLDVSIAKPVGDSPIESASRSPRVNASFSYQLY
>NZ_CP013386.1|WP_010104067.1|2157041_2157506_+|DUF2147-domain-containing-protein
MFQMTRSLRSITVAGALLACAASAFAQADSPIGTWQTIDDHTGKPKALVQISEDSSGELSGKVLKGLGENDTPDRRCTACTDERKDQLIKGMTIIKAMKKEGDGWDGGNILDPENGKVYKCKMKLEEGGQKLVVRGYIGVSLLGRSQTWMRAAQ
>NZ_CP013386.1|WP_059469549.1|2157630_2158038_-|transposase
MTPYRDINDEEWQRVAPLLPELRPRKELRGRPLADTRAVLNGVLWVIYSGANWSAMPRRFPAYQTCHRRFKAWHDSGALKRVLVELFGAESDDLSELMAMRMRTHTRSKAAEARSGGASTTSTAPRRDRALEHMI
>NZ_CP013386.1|WP_059469582.1|2158234_2159332_-|cell-division-protein-ZapE
MNVTEYYEHELKTRGYQSDAAQRAAVERLQRCYGEWVAYKARRSNAFKKLVIRPDLPRGVYMWGGVGRGKSFLMDSFYAVVPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRIAKRYRLICFDEFHVSDIADAMILYRLLDRLFLNGVQFVMTSNYDPDDLYPDGLHRDRMLPAIALLKDKLDVLNVDAGIDYRQRTLTQVRMYHTPLGAEADRALRHAFAQLAAVPDESPILHIEKREIKALRRADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSEVPQMSPRMASEARRFTWLIDVLYDHKVKLLMSAAVPAEDLYIEGPMANEFSRTVSRIVEMQSKEYLETPRRLIDTSLT
>NZ_CP013386.1|WP_059597780.1|2159438_2160869_-|dihydrolipoyl-dehydrogenase
MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACIEKWKNPAGALKLGGTCLNVGCIPSKALLASSEEFEKASHHLADHGISVGDVKMDVAKMIGRKDAIVEKMTGGIEFLFKKNKITWLKGHGKFTGKTDAGVQIEVSGEGETEIVTAKNVIIATGSKARHLPNVPVDNKIVADNEGALTFDAVPKKLAVIGAGVIGLELGSVWRRLGAEVTVLEALPAFLGAADEALAKEAAKLFKKQGLDINLGVKIDEVKAGASGVSIAYTDKDGSAKTLEADRLIVSIGRVPNTDNLGLEAIGLKANERGFIDVDDHCRTAVPNVYAIGDVVRGPMLAHKAEDEGVLVAEVIDGQKPHIDYNCIPWVIYTEPEIAWVGKTEQQLKAEGREIKSGKFPFSINGRALGMGRSDGFVKMIADAKTDELLGVHVISPNASDLIAEAVVAMEFKAASEDIARICHPHPSLSEVMREAALAVDKRSLNS
>NZ_CP013386.1|WP_059469551.1|2160965_2162237_-|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MAIVEVKVPQLSESVSEATMLQWKKKPGEAVAQDEILIELETDKVVLEVPAPAAGVLAQVLQNDGDTVVADQLIATIDTEAKAGAAAAAAGAAEVQPAAAPAAAPAAQPAAAAASSTAAAAPSAAKLMAEKGLAAGDVAGSGRDGRITKGDVLSAGSAPKAAPAAARALAAAKPALPEVKVPASATTWLNDRPEQRVPMSRLRARIAERLLESQQTNAILTTFNEVNMQPVMDLRAKYKDKFEKEHGVKLGFMSFFVKAAVHALKKFPLVNASIDGNDIVYHGYFDIGIAVGSPRGLVVPILRNADQLSLAEIEKKIAEFGQKAKDGKLSIDEMTGGTFSISNGGVFGSMLSTPIINPPQSAILGVHATKERPVVENGQIVIRPINYLALSYDHRIIDGREAVLSLVAMKDALEDPARLLLDL
>NZ_CP013386.1|WP_059597781.1|2162370_2165235_-|2-oxoglutarate-dehydrogenase-E1-component
MSDVMKQFQLNSYLFGGNASYVEELYEAYLDNPASVPENWREYFDALQNVPATDGSNASDVAHNPIVESFAQRAKANAFIPRESGGNLATARKQVHVQSLISAYRFLGSQWANLDPLKRRERPAIPELEPAFYDFSEADLDQTFSASNLYFGFEQASLRDIVKGLRDTYCGTIGAEFMYIGDPEQKRWWQDRLETIRATPNFSADKKKHILNRLTAAEGLERYLHTKYVGQKRFSLEGGESFIASMDEVVQHAGSKGVQEIVIGMAHRGRLNVLVNTLGKMPADLFAEFEGKHVDDLPAGDVKYHKGFSSDVSTEGGPVHLSLAFNPSHLEIVNPVVEGSAKARMDRRGDADGLQVLPVQIHGDAAFAGQGVVMETLNLAQTRGYGTHGTLHIVINNQIGFTTSDPRDSRSTLYCTDVVKMIEAPVLHVNGDDPEAVVLATRIAIDYRMQFHKDVVIDIVCFRKLGHNEQDTPAVTQPLMYKKIAQHPGTRALYAEKLVQQGVITAEEGDGFVKAYRKAMDDGHHTVDPVLSNYKSKYAVDWMPFLNRKWTDAADTAVPLAELKRLGERITTVPENFKVHPLVERVINDRRAMARGEQPLDWGMGEHLAFASLVASGYAVRLTGQDSGRGTFTHRHAVLHDQNRERWNDGTYVPLQNIAEGQAKFTVIDSVLSEEAVLGFEYGYSTAEPNTLVAWEAQFGDFVNGAQVVIDQFISSGEVKWGRVSGLTMLLPHGYEGQGPEHSSTRIERFLQLCADHNMQVVQPTTPAQIFHLLRRQMIRLFRKPLVVATPKSLLRHKEAVSDLSELAKGSFQPVLGEIDGGIDAKKVKRVLICSGRVYYDLVAHRREAKANDVAIVRIEQLYPFAHKQFEAEMKKFENATEVVWVQDEPQNQGPWFYVEHHLKEGMKEGQKLAYSGRPASASPAVGYYAKHYEQQKALIEGAFGRLKSASIAK
>NZ_CP013386.1|WP_059469553.1|2165716_2167543_-|translational-GTPase-TypA
MTRALRNIAIIAHVDHGKTTLVDQLLRQSGTFRENQQVAERVMDSNDIEKERGITILAKNCAVEYDGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAVEGPMPQTRFVTKKALALGLKPIVVVNKIDRPGARIDWVINQTFDLFDKLGATEEQLDFPIVYASGLNGYASLDPAARDGDMRPLFEAILEHVPVRPADPDAPLQLQITSLDYSTYVGRIGVGRITRGRIKPGMPVVMRFGPEGDVLSRKINQVLSFEGLERVQVESAEAGDIVLINGIEDVGIGATICAVDTPEALPMITVDEPTLTMNFLVNSSPLAGREGKFVTSRQIRDRLMKELNHNVALRVKDTGDETVFEVSGRGELHLTILVENMRREGYELAVSRPRVVMQEVDGVKHEPYELLTVDLEDEHQGGVMEELGRRKGEMLDMVSDGRGRTRLEYRIPARGLIGFQGEFLTLTRGTGLMSHIFDAYAPVREGSVGERRNGVLISQDDGAAVAYALWKLQDRGRMFVKPGDALYEGMIIGIHSRDNDLVVNPIKGKQLTNVRASGTDEAVRLVPPIQMSLEYAVEFIDDDELVEVTPQSIRLRKRHLKEHERRRASREAEAG
>NZ_CP013386.1|WP_059469554.1|2167833_2168331_+|MarR-family-transcriptional-regulator
MSDPSSSQHDLDLSLYQINDSVGYLMSRVKSLMTNMVTQRTQTELGITGTQATMLFMLAVGKCSTAAELAREYGIDASAITRLLDRVEKRGLLQRVRSSEDRRVVRLELTDEGRELTRRMPAIFRSVLDQVLDGFTPEEVGFLKSMLRRILVNSGECPGTGGSPS

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Crispr_ID: NZ_CP013386_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013386_2

2522172-2522329

Orphan

Consensus_repeat	Method
GCGGCGTCGGCTCCGGCGTCCGCGCC	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP013386_2

>merge|NZ_CP013386|2|2522172-2522329|CRISPRCasFinder
TCGATGCCAGCTGCGGCGTCGGCTCCGGCGTCCGCGCCGACCGCGGCTTCGGCTTCGACGTCCGCGTTCGCGCCTGCCGCGGCCTCGGCTCCGGCGTCCGCGCCCGCGCCGGCATCGGTTCCCGTGCCGATGTCCGCACCGGCGCCGACATCCACGCC

>NZ_CP013386|2|2|2522172-2522329|CRISPRCasFinder
TCGATGCCAGCTGCGGCGTCGGCTCC	GGCGTCCGCGCCGACC
GCGGCTTCGGCTTCGACGTCCGCGTT	CGCGCCTGCCGCGGCC
TCGGCTCCGGCGTCCGCGCCCGCGCC	GGCATCGGTTCCCGTGCCGATG
TCCGCACCGGCGCCGACATCCACGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013386.1\|WP_059597168.1\|2514872_2515721_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237907
NZ_CP013386.1\|WP_059597178.1\|2527331_2528900_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP013386.1\|WP_159082894.1\|2524663_2524864_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013386.1\|WP_059597167.1\|2514209_2514605_-\|malonate-transporter-subunit-MadL	unknown	unknown	gnl\|CDD\|367674
NZ_CP013386.1\|WP_059473257.1\|2511431_2513078_-\|malonate-decarboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|379906
NZ_CP013386.1\|WP_162498950.1\|2529709_2530192_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013386.1\|WP_059597170.1\|2516583_2517501_-\|3-hydroxyacyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|168796
NZ_CP013386.1\|WP_162498963.1\|2519933_2520473_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013386.1\|WP_059597177.1\|2525622_2526954_+\|carotenoid-oxygenase	unknown	unknown	gnl\|CDD\|226196
NZ_CP013386.1\|WP_059597165.1\|2510146_2511094_-\|biotin-independent-malonate-decarboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|235954
NZ_CP013386.1\|WP_059597181.1\|2530149_2530944_-\|DUF2182-domain-containing-protein	unknown	unknown	gnl\|CDD\|378321
NZ_CP013386.1\|WP_059597166.1\|2513428_2514196_-\|malonate-transporter-subunit-MadM	unknown	unknown	gnl\|CDD\|129890
NZ_CP013386.1\|WP_059473339.1\|2530992_2531595_-\|DUF1326-domain-containing-protein	unknown	unknown	gnl\|CDD\|369182
NZ_CP013386.1\|WP_059597179.1\|2529020_2529659_+\|FMN-binding-negative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225366
NZ_CP013386.1\|WP_059597171.1\|2518055_2519921_-\|phosphoenolpyruvate-carboxykinase-(GTP)	unknown	unknown	gnl\|CDD\|235256
NZ_CP013386.1\|WP_059597175.1\|2523702_2524602_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176161
NZ_CP013386.1\|WP_059473258.1\|2511090_2511408_-\|malonate-decarboxylase-acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179367
NZ_CP013386.1\|WP_059597169.1\|2516241_2516499_+\|DUF4148-domain-containing-protein	unknown	unknown	gnl\|CDD\|379321
NZ_CP013386.1\|WP_059473246.1\|2522683_2523457_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183716
NZ_CP013386.1\|WP_059473244.1\|2524922_2525606_+\|DUF2239-family-protein	unknown	unknown	gnl\|CDD\|378346

Protein	Function_ID	Function_description	E-value
NZ_CP013386.1\|WP_059597168.1\|2514872_2515721_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|237907	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional.	1.45088e-38
NZ_CP013386.1\|WP_059597178.1\|2527331_2528900_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.33069e-131
NZ_CP013386.1\|WP_059597167.1\|2514209_2514605_-\|malonate-transporter-subunit-MadL	gnl\|CDD\|367674	pfam03817, MadL, Malonate transporter MadL subunit.	3.36085e-53
NZ_CP013386.1\|WP_059473257.1\|2511431_2513078_-\|malonate-decarboxylase-subunit-alpha	gnl\|CDD\|379906	pfam16957, Mal_decarbox_Al, Malonate decarboxylase, alpha subunit, transporter. Mal_decarbox_Al is a family of Na+-transporting carboxylic acid decarboxylases.	0
NZ_CP013386.1\|WP_059597170.1\|2516583_2517501_-\|3-hydroxyacyl-CoA-dehydrogenase	gnl\|CDD\|168796	PRK07066, PRK07066, L-carnitine dehydrogenase.	2.86836e-76
NZ_CP013386.1\|WP_059597177.1\|2525622_2526954_+\|carotenoid-oxygenase	gnl\|CDD\|226196	COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	2.43489e-113
NZ_CP013386.1\|WP_059597165.1\|2510146_2511094_-\|biotin-independent-malonate-decarboxylase-subunit-beta	gnl\|CDD\|235954	PRK07189, PRK07189, malonate decarboxylase subunit beta; Reviewed.	3.51135e-152
NZ_CP013386.1\|WP_059597181.1\|2530149_2530944_-\|DUF2182-domain-containing-protein	gnl\|CDD\|378321	pfam09948, DUF2182, Predicted metal-binding integral membrane protein (DUF2182). This domain, found in various hypothetical bacterial membrane proteins having predicted metal-binding properties, has no known function.	3.2225e-64
NZ_CP013386.1\|WP_059597166.1\|2513428_2514196_-\|malonate-transporter-subunit-MadM	gnl\|CDD\|129890	TIGR00808, malonate_transporter, malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	9.10199e-102
NZ_CP013386.1\|WP_059473339.1\|2530992_2531595_-\|DUF1326-domain-containing-protein	gnl\|CDD\|369182	pfam07040, DUF1326, Protein of unknown function (DUF1326). This family consists of several hypothetical bacterial proteins which seem to be found exclusively in Rhizobium and Ralstonia species. Members of this family are typically around 210 residues in length and contain 5 highly conserved cysteine residues at their N-terminus. The function of this family is unknown.	7.01861e-72
NZ_CP013386.1\|WP_059597179.1\|2529020_2529659_+\|FMN-binding-negative-transcriptional-regulator	gnl\|CDD\|225366	COG2808, PaiB, Transcriptional regulator [Transcription].	2.17249e-97
NZ_CP013386.1\|WP_059597171.1\|2518055_2519921_-\|phosphoenolpyruvate-carboxykinase-(GTP)	gnl\|CDD\|235256	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP).	0
NZ_CP013386.1\|WP_059597175.1\|2523702_2524602_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.33466e-106
NZ_CP013386.1\|WP_059473258.1\|2511090_2511408_-\|malonate-decarboxylase-acyl-carrier-protein	gnl\|CDD\|179367	PRK02103, PRK02103, malonate decarboxylase acyl carrier protein.	1.08383e-61
NZ_CP013386.1\|WP_059597169.1\|2516241_2516499_+\|DUF4148-domain-containing-protein	gnl\|CDD\|379321	pfam13663, DUF4148, Domain of unknown function (DUF4148).	1.28748e-07
NZ_CP013386.1\|WP_059473246.1\|2522683_2523457_-\|SDR-family-oxidoreductase	gnl\|CDD\|183716	PRK12744, PRK12744, SDR family oxidoreductase.	9.8046e-174
NZ_CP013386.1\|WP_059473244.1\|2524922_2525606_+\|DUF2239-family-protein	gnl\|CDD\|378346	pfam09998, DUF2239, Uncharacterized protein conserved in bacteria (DUF2239). This domain, found in various hypothetical bacterial proteins, has no known function.	2.28903e-91

>NZ_CP013386.1|WP_162498963.1|2519933_2520473_+|hypothetical-protein
MLWNQNAARARRDDARDGWRSDATRWLGATPARTRIAGVTLNVPTPKIVERSFFLGLGTTVSPSLLMHLPYDQGDRQHTIAMRAAALRRSKTRLPRAGARFRLDERAPGRSANAIGIIQHAANTGFYRRERAVRQACRRQRQRGSAMWNRCVRWAAHARIRDSVRAIAFDADASNRFAA
>NZ_CP013386.1|WP_059597171.1|2518055_2519921_-|phosphoenolpyruvate-carboxykinase-(GTP)
MTRSNVVAATRTIPIDVPEYVKHRGLIDWVTRIAELAEPDRVVWCDGSQAEYDRLCDAMVEQGTMVRLDPAKRPNSFLALSDPSDVARVEDRTFICSEQRDDAGPTNHWIAPAEMRATLNGLFRGAMRGRTLYVVPFSMGPLGSSIAHIGVELSDSPYVVVNMRIMTRMGRDVLDALGEAGQYVPCVHSVGRPLAADEQDVAWPCNPTKYIVHFPESREIWSFGSGYGGNALLGKKCFALRIASTMGRDEGWLAEHMLILGVTSPEGRKYHIAAAFPSACGKTNFAMLIPPKGFEGWRVTTIGDDIAWLKPGKDGRLYAINPEAGYFGVAPGTGAKTNPNALATLTENVIFTNVALTEDGDVWWEGLTDTPPARLTDWQGNAWTPEIGRETGRKAAHPNSRFTAPASQCPSIDDDWENPAGVPIDAFIFGGRRSTTVPLVTEARDWVEGVYMAATMGSETTAAAAGQQGVVRRDPFAMLPFCGYNMSDYFAHWLSFGGKLAAAGAALPKIYCVNWFRKDADGRFVWPGFGENMRVLKWMLDRIDGQGAGVEHAFGVTPRYEDLHWAGLAFSPAQFEQVTSMDPAEWRDELALHAELFDKLSARLPSALAETKAKIEARLAA
>NZ_CP013386.1|WP_059597170.1|2516583_2517501_-|3-hydroxyacyl-CoA-dehydrogenase
MKIQRIAVVGAGVIGASWTAFYLSKGFDVAVTDPAPDARTRLDAALANFLGERAATLASRLAFEPTLDAALDGADFVQENGPERLDLKRDLYRRIDALLPAHVLVASSSSGLRMSDIQSACDAHPARCLVAHPFNPPHLIPLVELVGGAATSADAIAQAKRFYDGLGKVTIVLNKEMAGHVANRLAAALFREVYHLVGEGVVSVEDADKAVSWGPGLRWGLMGQNLVYHLGGGEGGIAHFLEHLSGPMTTWWNDLGAPSFSPDVDRKLIDALREIQGARSMAELGAERDRLLVELIDVRRDSFLP
>NZ_CP013386.1|WP_059597169.1|2516241_2516499_+|DUF4148-domain-containing-protein
MNTLRFLVTAAAIATSVLTATSALASASDASQGKTRAQVRAELIQAYRDGVIPASDGDYPPSQATIDANRTRPAAANPAWAREQQ
>NZ_CP013386.1|WP_059597168.1|2514872_2515721_+|LysR-family-transcriptional-regulator
MRPLPPELLRSFVAVAQTGSFTAASERVNLSQSTVSQHIRRLEEQLDRPLFERDTRNVRLAPNGEALFRYALRILELMDEAVASVCGPPLSGKVRLGLSEDFALTHLTAALVSFVQRNPEVELEIATGLSGDLFVALDAGRHDLVFAKRIAGSRRGRVIRTEPLFWCTGPDSLLTGREPVLPLALHPEPSVSRRRVLDTLEAIGRPHRIAVASSSIAVLRAAASAGLGISAFAGYVIPHGLAKLEADLPPLGDLEYVIDRPANASRPALALEATLVAAAHEL
>NZ_CP013386.1|WP_059597167.1|2514209_2514605_-|malonate-transporter-subunit-MadL
MIIYGTALLAFCHLAGLFLGDLLGAAIGAKTNVGGVGIAMLLLIGLRLFLHRRGWLPKEAESGIAFWGAMYIPVVVAMAANQNVVAALKGGPVALLSAAGAVAVCAVCIAALARVGHDATALSALPQPEEN
>NZ_CP013386.1|WP_059597166.1|2513428_2514196_-|malonate-transporter-subunit-MadM
MIDMLGKIVAHNGLVASFALVGCIMFASAALSKRLTFGRVHGSAIAILIGLALAYVGGAYTGGEKGIADVPFFAGVGLMGGAMLRDFAIVATAFEVQPAEARKAGLIGVASLLLGTVLPFVVGASVARAFGYSDAVSMTTIGAGAVTYIVGPVTGAAIGASSDVIALSIATGLVKAIIVMVGTPFAAGFMGLRTPRAAMIFGGLAGTVSGVSAGLAATDRRLVPYGALIATFHTGVGCLLGPSLLFFATKAAVGA
>NZ_CP013386.1|WP_059473257.1|2511431_2513078_-|malonate-decarboxylase-subunit-alpha
MTGWNDARAARAARLAAAAPLARHKRVAARDATALLEAVLRPGDRVCIEGDNQKQADLLAAALAAVDSARVHGLHMVQSGVVLPEHLDVFERGVAKRLDYAYSGPQSQRIAKLLFGGKIELGAVHTYLELFARYFIDLTPHVALVAAVSADADGNLYTGPNTEDTPTVVEATAFKDGVVIAQVEQIVDRVPRVDIPGDRVHFVVEAGRPFYVEPLFTRDPAGITETQILTAMLALKGIYARYGVKRLNHGIGFNTAAIELLLPTYGERLGLKGKVCTHWALNPHPTLIPAIESGWVEQIHCFGSEVGMDDYIRARSDIFFTGVDGSLRSNRAFCQTAGLYACDMFIGSTLQIDLAGHSSTVTAERIAGFGGAPNMGSDARGRRHSSEPWIKAGEEADPATPAALRRGRKLVVQIGETFGERNAPMFVEKLDALRLADKLSLDLAPVMVYGDDVTHVVTEEGIANLLLCRDADEREHAIRGVAGYTEIGRGRDRRLVERLRERGVIRRPEDLGIDPLDADRRLLAARSIKDLVHWSDGLYAPPSRFRNW
>NZ_CP013386.1|WP_059473258.1|2511090_2511408_-|malonate-decarboxylase-acyl-carrier-protein
MEQLNYRHTARERAKGDAAWALVGVVASGNLEVLVERVLPDTECEVDIRTAAVGFGDVWQAVVADFVERRSPGGLRLSVNDGGARPDMVSLRLAQAVRAIEGDAR
>NZ_CP013386.1|WP_059597165.1|2510146_2511094_-|biotin-independent-malonate-decarboxylase-subunit-beta
MNAAATTAHPEFAPAGASWFEASARQRLAGLVDAGSFEEFIGPQDRLTSPHLPIFDLPQQFDDGMIVGRAALDGEPVLVAAQEGRFMGGAFGEVHGAKLTGLLRAARERRPMPVLILFDTGGVRLQEANAGEIAVSEIIRAVIDARAAGVPVVGLVGGRAGCYGGGGIIAACCSALAVSEQGRIGVSGPEVIESRRGVDEFDARDRALIWRTMGGKHRRLVGGAERFVDDTIDAFRDAAIALVARVRAGTAFGAATLAAEHARLVERIARFGECGDALDVWRALGAPDADAIPSLDGAAFASLADRLTEVRHDAR
>NZ_CP013386.1|WP_059473246.1|2522683_2523457_-|SDR-family-oxidoreductase
MADHSIKGKTVIVAGGAKNLGGLIARDLAEHGAKAVVIHYNSPGTQADAEATVAAMKAAGAQAVALQADLTTAGAVEKLFADAVAAVGRPDIAINTVGKVLKKPFAEITEAEYDEMAAVNSKSAFFFLKEAGKQVNDNGKILTLVTSLLGAFTPFYAAYAGLKAPVEHFTRAAAKEFGARGISVTAVGPGPMDTPFFYPAEGADAVAYHKTAAALSPFSKTGLTDIEDVVPFIRHLVSDGWWVTGQTILINGGYTTK
>NZ_CP013386.1|WP_059597175.1|2523702_2524602_+|LysR-family-transcriptional-regulator
MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLNRTTRKVTPTQDGAALYERCLRVIADVEETENLFRHSTVGPGGTLRVDMPGRIGRLIVAPALPAFLDQYPQISIDLGVTDRAVNLIEERVDCVLRVGTLSDSGLVARAIGNLPLINVASPAYLARHGVPRTPADLSRHRPIHYASPSSGRIAPWEWVEGDAVRRLSLQGRVTVNNAEAYIACCLSGLGLIQIPAYDVDAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRLQVFADWLETRLKETVL
>NZ_CP013386.1|WP_159082894.1|2524663_2524864_+|hypothetical-protein
MFGLFGLFGLFGLFGLFGLFGLFGLFGLFGLFGLFGLFGLFGLFGGSAVRRFGGSAVRRQILSGYY
>NZ_CP013386.1|WP_059473244.1|2524922_2525606_+|DUF2239-family-protein
MTSAPLPSHIAFDGYRRLAAGPLSTVAIAVKRAVENDAVGGAVLIFDNATGRSIDIDTRGSDDDIATRYAQTASAEDGNAQRDGMARESAPDSAGAPDANGGASEPRGRGRPKLGVVAREVTLLPRHWEWLATQPGGASVVLRRLVDEARRTHAHEDRRRRTQERAYHFMSAIAGDMPGFEEATRALFANDGARLRELVAAWPADVRDHALALAFTNDDAAPPPATL
>NZ_CP013386.1|WP_059597177.1|2525622_2526954_+|carotenoid-oxygenase
MTAIDLNAGALAPVADEVDLVDLPVTGSIPRDLNGVLVRNGPNPLRGRFEGDDVLSWWPEDAMLHAVALQDGRAARYRNRWARTQRWARVHDPDRAPSLVDTNPNVNVLVHAGEILALAEGGAPLAITAGLDSLGASRRHPGLAPGMAAHPKVDPHTGELIVFRADWNRPWLRYGVADAAGVQTVDIEVDWPAPSMMHDIAITATHSIVFDLNVAYDFSMLSRGHRMPLRWHDERRARIGVLPRHGGDTRWFDVAPCFIQHVVNAYDRHRSAIVLDVVRYPWFLRLAGDGRTFDDNPVGVLWRYVIDLETGIVAEQPLDDTGIELPRINENRTGRRHRFLYATEQPTNAELRGVVRYDVDAGSTQRYRVPPGDQNSEPVFVPRPGAVDEDDGWLLVCVYRRKTDTSDLVILDGRRIDDEPIATVHLPRRIPAGFHGAWLPGDR
>NZ_CP013386.1|WP_059597178.1|2527331_2528900_-|PLP-dependent-aminotransferase-family-protein
MARIARIIEIPSIGALDRSTGNLSRQLAQALRDAVRKGDVKPGDALPSTRLLAASLRIARGTVVDAYEQLIAEGFLESRGGADTRVAHALAEPRPGSEPPRAARRRETSAVRSSLPQPAAAYARIAREFAPLPPVPFAISVPVGATAPDDVWRRLGNRLRAKGAAAPTSYADPQGAQPLREAIADYVRKSRSVRCKPDQVIVTSGTQQGLYLACQVLLGAHDRAWVENPAYRGITAILECTGRGDAMVRVPVDADGIDVDAGIRLAHDARAAFVTPSHQYPLGMPMSMARRSALLAWARAGDAWVIEDDYDSELRYEGYPFPSLQGLDPERVVYLGTFSKMLFPSLRLGYLIVPDDLVAAFCGARVLMDRHAPTADQYVLAALMAEGHFDRHIRRVRGVYADHRAQLIDTLGRLLPGDLAWLQPGDQGMHAVLWLAAGIDDLQVTAIAARAGVAVRAVSPMFAPGTARSGLVLGFGGFSREQMDAAAQRLAEVIASVGGAASRDRSKRAGVADDVDAAERRK
>NZ_CP013386.1|WP_059597179.1|2529020_2529659_+|FMN-binding-negative-transcriptional-regulator
MYVPTHFDERRTDVLHALIAQHPFGILVTHGTSGLDANHIPFELAASEGPLGVLSAHVARANPIWQDVSSGDEVLVVFRAGDAYISPTWYPSKHAFHRQVPTWNYVVVHAHGRITVRDDEKFVRGVVARLTRTHEAALPEPWKMTDAPKDYIDTMLQSIVGLQIDITRLVGKYKLGQNKEARDIRGAAEMLKARGNDLIGDAMLARAVEKPE
>NZ_CP013386.1|WP_162498950.1|2529709_2530192_-|hypothetical-protein
MGGVDRRDGTSPGLIRGDLRAAVRVARTRHADGHRGRVDRHVGIRRRRGARDCAGILRFRETHGASAIAGAPEASLQAFTLMKVVGRDIWIGIWAFVRARDRRDDALGTRRRHRRAAARKRDLGALSEVRDRLRRRIGVRNGALRATPASLRRRSRRRSR
>NZ_CP013386.1|WP_059597181.1|2530149_2530944_-|DUF2182-domain-containing-protein
MNATSSSRVFVPLAIAMIAAAWITLWMWDSSPYARFLHHVDWSEASLAELCRLIPAGDTIVPAMLHAAAWLLTIVAMMLPTVLPLLRTFERLTAARADRNRLLLMVVLGYLAVWSVFGLAVDAGDAGLHALVRRTPWLAWHGWLVGAIVLALAGAYQFSSLKYRCLDKCRSPLMFVSEQWRGGSARRDSLLLGMRHGLFCVGCCWLLMCLMFAVGAGNVGWMLALGAVMAGEKNLPHGRRLSAPLGVALLGWAASIVVTGLRLV
>NZ_CP013386.1|WP_059473339.1|2530992_2531595_-|DUF1326-domain-containing-protein
MSYSLEGRILEVCDCKVLCPCWIGEDPDNGTCRATVAYHYDKGMVDEVDVSGLTVAFAAFVPGNILQGNWRVIIFIDDRATDAQFDVLASVYRGERGGPLADFSQLFGDIVAIERAAIDFDVRDGKGTLKVGNTTYAELEPYRGPTGEPTRLVESIFSTIPGSPAYVGKAGTFRMHEQKLGIDLDLSGQNAIQGFFMFRS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	NZ_CP013386.1	2152351-2152378	0	1.0

1. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to position: 2152351-2152378, mismatch: 0, identity: 1.0

tcgacttccggcggcggctcgacttccg	CRISPR spacer
tcgacttccggcggcggctcgacttccg	Protospacer
****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013386_2	2.3\|2522282\|22\|NZ_CP013386\|CRISPRCasFinder	2522282-2522303	22	NZ_CP020475	Roseovarius mucosus strain SMR3 plasmid pSMR3-1, complete sequence	116167-116188	2	0.909
NZ_CP013386_2	2.3\|2522282\|22\|NZ_CP013386\|CRISPRCasFinder	2522282-2522303	22	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	1166528-1166549	2	0.909
NZ_CP013386_2	2.3\|2522282\|22\|NZ_CP013386\|CRISPRCasFinder	2522282-2522303	22	NZ_CP023064	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence	985350-985371	2	0.909
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	12539-12566	5	0.821
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1929010-1929037	5	0.821
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1547041-1547068	5	0.821
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1120430-1120457	5	0.821
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	149423-149450	5	0.821
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	LR743524	Xylella phage Bacata genome assembly, chromosome: 1	29184-29211	6	0.786
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	NZ_CP013381	Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence	176376-176403	6	0.786
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	308053-308080	6	0.786
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	NZ_CP013419	Burkholderia sp. MSMB0266 plasmid pMSMB0266, complete sequence	23863-23890	6	0.786
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	NZ_CP009547	Burkholderia sp. 2002721687 plasmid pBTU, complete sequence	246598-246625	6	0.786
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	NZ_CP015522	Sphingomonas sp. NIC1 plasmid unnamed1, complete sequence	56386-56413	7	0.75
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	NZ_CP023000	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence	836490-836517	7	0.75
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	744366-744393	7	0.75
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	MN369761	Mycobacterium phage Malthus, complete genome	48019-48046	7	0.75
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	KJ944841	Mycobacterium phage Cheetobro, complete genome	48023-48050	7	0.75
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	MN945904	Mycobacterium phage Eponine, complete genome	48870-48897	7	0.75
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	AP018469	Mycobacterium phage Y10 DNA, complete genome, note: sample1	48233-48260	7	0.75
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	KY087992	Mycobacterium phage Mitti, complete genome	48174-48201	7	0.75
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	MF140402	Mycobacterium phage Chancellor, complete genome	48026-48053	7	0.75
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	AP018470	Mycobacterium phage Y2 DNA, complete genome	48233-48260	7	0.75
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	KT361920	Mycobacterium phage Slarp, complete genome	48026-48053	7	0.75
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	MT310882	Mycobacterium phage JF1, complete genome	48233-48260	7	0.75
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	AP018471	Mycobacterium phage Y10 DNA, complete genome, note: sample2	48233-48260	7	0.75
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	KX621007	Mycobacterium phage Taquito, complete genome	48231-48258	7	0.75
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	MH051258	Mycobacterium phage SamScheppers, complete genome	48498-48525	7	0.75
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	MF140435	Mycobacterium phage Wintermute, complete genome	48257-48284	7	0.75
NZ_CP013386_1	1.3\|2152315\|28\|NZ_CP013386\|CRISPRCasFinder	2152315-2152342	28	NC_027365	Mycobacterium virus Fionnbarth, complete genome	48268-48295	7	0.75

1. spacer 2.3|2522282|22|NZ_CP013386|CRISPRCasFinder matches to NZ_CP020475 (Roseovarius mucosus strain SMR3 plasmid pSMR3-1, complete sequence) position: , mismatch: 2, identity: 0.909

ggcatcggttcccgtgccgatg	CRISPR spacer
cacatcggttcccgtgccgatg	Protospacer
 .********************

2. spacer 2.3|2522282|22|NZ_CP013386|CRISPRCasFinder matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 2, identity: 0.909

ggcatcggttcccgtgccgatg	CRISPR spacer
gacatcggttcccgtgccgatc	Protospacer
*.*******************

3. spacer 2.3|2522282|22|NZ_CP013386|CRISPRCasFinder matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 2, identity: 0.909

ggcatcggttcccgtgccgatg	CRISPR spacer
gacatcggttcccgtgccgatc	Protospacer
*.*******************

4. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.821

tcgacttccggcggcggctcgacttccg	CRISPR spacer
tcggcttccggcggcggctcgatcatcg	Protospacer
***.******************.. .**

5. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.821

tcgacttccggcggcggctcgacttccg	CRISPR spacer
tcggcttccggcggcggctcgatcatcg	Protospacer
***.******************.. .**

6. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 5, identity: 0.821

tcgacttccggcggcggctcgacttccg	CRISPR spacer
tcggcttccggcggcggctcgatcatcg	Protospacer
***.******************.. .**

7. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 5, identity: 0.821

tcgacttccggcggcggctcgacttccg	CRISPR spacer
tcggcttccggcggcggctcgatcatcg	Protospacer
***.******************.. .**

8. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 5, identity: 0.821

tcgacttccggcggcggctcgacttccg	CRISPR spacer
ccgacctccggcggcggctcgaccagcg	Protospacer
.****.*****************.  **

9. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to LR743524 (Xylella phage Bacata genome assembly, chromosome: 1) position: , mismatch: 6, identity: 0.786

tcgacttccggcggcggctcgacttccg	CRISPR spacer
tcgacttccggcggcagctcgatgcgct	Protospacer
***************.******. . *

10. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to NZ_CP013381 (Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence) position: , mismatch: 6, identity: 0.786

tcgacttccggcggcggctcgacttccg	CRISPR spacer
tcgacttccggcagcggctcgctgaacg	Protospacer
************.******** .   **

11. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.786

tcgacttccggcggcggctcgacttccg	CRISPR spacer
tcgacttccggcggcggcgcgtggggcg	Protospacer
****************** **     **

12. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to NZ_CP013419 (Burkholderia sp. MSMB0266 plasmid pMSMB0266, complete sequence) position: , mismatch: 6, identity: 0.786

tcgacttccggcggcggctcgacttccg	CRISPR spacer
tcgacttccggcagcggctcgctgaacg	Protospacer
************.******** .   **

13. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to NZ_CP009547 (Burkholderia sp. 2002721687 plasmid pBTU, complete sequence) position: , mismatch: 6, identity: 0.786

tcgacttccggcggcggctcgacttccg	CRISPR spacer
tcgacttccggcagcggctcgctgaacg	Protospacer
************.******** .   **

14. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to NZ_CP015522 (Sphingomonas sp. NIC1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.75

tcgacttccggcggcggctcgacttccg	CRISPR spacer
gggacttccggcgccggctcgacgcgcc	Protospacer
  *********** ********* . *

15. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 7, identity: 0.75

tcgacttccggcggcggctcgacttccg	CRISPR spacer
acgacttccggcggcgtctcgatgggca	Protospacer
 *************** *****.   *.

16. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 7, identity: 0.75

tcgacttccggcggcggctcgacttccg	CRISPR spacer
tcgacttcaggcggcggctcgtccgtga	Protospacer
******** ************ *. . .

17. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to MN369761 (Mycobacterium phage Malthus, complete genome) position: , mismatch: 7, identity: 0.75

tcgacttccggcggcggctcgacttccg	CRISPR spacer
cgcacttccggcagcggctcggcttcat	Protospacer
.  *********.********.****

18. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to KJ944841 (Mycobacterium phage Cheetobro, complete genome) position: , mismatch: 7, identity: 0.75

tcgacttccggcggcggctcgacttccg	CRISPR spacer
cgcacttccggcagcggctcggcttcat	Protospacer
.  *********.********.****

19. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to MN945904 (Mycobacterium phage Eponine, complete genome) position: , mismatch: 7, identity: 0.75

tcgacttccggcggcggctcgacttccg	CRISPR spacer
cgcacttccggcagcggctcggcttcat	Protospacer
.  *********.********.****

20. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to AP018469 (Mycobacterium phage Y10 DNA, complete genome, note: sample1) position: , mismatch: 7, identity: 0.75

tcgacttccggcggcggctcgacttccg	CRISPR spacer
cgcacttccggcagcggctcggcttcat	Protospacer
.  *********.********.****

21. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to KY087992 (Mycobacterium phage Mitti, complete genome) position: , mismatch: 7, identity: 0.75

tcgacttccggcggcggctcgacttccg	CRISPR spacer
cgcacttccggcagcggctcggcttcat	Protospacer
.  *********.********.****

22. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to MF140402 (Mycobacterium phage Chancellor, complete genome) position: , mismatch: 7, identity: 0.75

tcgacttccggcggcggctcgacttccg	CRISPR spacer
cgcacttccggcagcggctcggcttcat	Protospacer
.  *********.********.****

23. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to AP018470 (Mycobacterium phage Y2 DNA, complete genome) position: , mismatch: 7, identity: 0.75

tcgacttccggcggcggctcgacttccg	CRISPR spacer
cgcacttccggcagcggctcggcttcat	Protospacer
.  *********.********.****

24. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to KT361920 (Mycobacterium phage Slarp, complete genome) position: , mismatch: 7, identity: 0.75

tcgacttccggcggcggctcgacttccg	CRISPR spacer
cgcacttccggcagcggctcggcttcat	Protospacer
.  *********.********.****

25. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to MT310882 (Mycobacterium phage JF1, complete genome) position: , mismatch: 7, identity: 0.75

tcgacttccggcggcggctcgacttccg	CRISPR spacer
cgcacttccggcagcggctcggcttcat	Protospacer
.  *********.********.****

26. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to AP018471 (Mycobacterium phage Y10 DNA, complete genome, note: sample2) position: , mismatch: 7, identity: 0.75

tcgacttccggcggcggctcgacttccg	CRISPR spacer
cgcacttccggcagcggctcggcttcat	Protospacer
.  *********.********.****

27. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to KX621007 (Mycobacterium phage Taquito, complete genome) position: , mismatch: 7, identity: 0.75

tcgacttccggcggcggctcgacttccg	CRISPR spacer
cgcacttccggcagcggctcggcttcat	Protospacer
.  *********.********.****

28. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to MH051258 (Mycobacterium phage SamScheppers, complete genome) position: , mismatch: 7, identity: 0.75

tcgacttccggcggcggctcgacttccg	CRISPR spacer
cgcacttccggcagcggctcggcttcat	Protospacer
.  *********.********.****

29. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to MF140435 (Mycobacterium phage Wintermute, complete genome) position: , mismatch: 7, identity: 0.75

tcgacttccggcggcggctcgacttccg	CRISPR spacer
cgcacttccggcagcggctcggcttcat	Protospacer
.  *********.********.****

30. spacer 1.3|2152315|28|NZ_CP013386|CRISPRCasFinder matches to NC_027365 (Mycobacterium virus Fionnbarth, complete genome) position: , mismatch: 7, identity: 0.75

tcgacttccggcggcggctcgacttccg	CRISPR spacer
cgcacttccggcagcggctcggcttcat	Protospacer
.  *********.********.****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

434360 : 462586

Burkholderia_phage(44.44%)

tail,protease,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059472260.1\|434360_434885_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.1e-21	51.5
WP_159082853.1\|435038_435959_+	hypothetical protein	NA	NA	NA	NA
WP_082722386.1\|435972_436809_-	hypothetical protein	S5YQN9	Mycobacterium_phage	3.9e-48	43.2
WP_059598042.1\|437915_438194_-	DUF4224 domain-containing protein	E5E3T1	Burkholderia_phage	1.8e-34	84.1
WP_108033886.1\|438298_438865_-\|plate	Baseplate J family protein	A0A089FGR9	Burkholderia_phage	1.8e-49	83.8
WP_108033887.1\|439909_440500_+	hypothetical protein	NA	NA	NA	NA
WP_082722422.1\|440603_441071_-	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	1.2e-70	90.3
WP_059472116.1\|441067_441484_-\|tail	phage tail protein	A4JWT7	Burkholderia_virus	5.4e-67	92.8
WP_050042436.1\|441476_441611_-	hypothetical protein	K4PAX1	Burkholderia_phage	4.0e-16	93.2
WP_059598340.1\|442336_444739_+	N-6 DNA methylase	A0A2H4PQP4	Staphylococcus_phage	2.1e-70	37.0
WP_159082854.1\|444729_445986_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_059473094.1\|445995_449082_+	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_059473095.1\|449078_449807_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_082722425.1\|450124_452089_+	ATP-binding protein	A0A2H4J2R8	uncultured_Caudovirales_phage	6.2e-246	65.6
WP_059473096.1\|452307_452808_-	TIGR04141 family sporadically distributed protein	NA	NA	NA	NA
WP_059473097.1\|453596_454382_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_059473098.1\|454378_455725_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_059473099.1\|455833_456448_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_059598338.1\|456823_457492_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_059598337.1\|457528_458047_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_059473102.1\|458063_459554_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_059473103.1\|459625_460129_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_059598336.1\|460186_460669_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_059598335.1\|460747_462586_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_2

989803 : 1000661

Streptococcus_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059469266.1\|989803_991918_-	elongation factor G	E4ZFJ7	Streptococcus_phage	1.2e-56	27.3
WP_059469303.1\|992165_992675_-	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	6.5e-14	42.2
WP_059469265.1\|992864_993083_-	hypothetical protein	NA	NA	NA	NA
WP_059469264.1\|993346_993925_-	pseudouridine synthase	NA	NA	NA	NA
WP_059469263.1\|994191_995451_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.5e-11	63.0
WP_059469262.1\|995618_997205_+	multicopper oxidase family protein	NA	NA	NA	NA
WP_004196460.1\|997316_997520_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_059469261.1\|998049_998364_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	9.9e-13	43.4
WP_059596451.1\|998360_1000661_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	41.5

DBSCAN-SWA_3

1900654 : 1955080

Paenibacillus_phage(40.0%)

transposase,integrase

attL 1897549:1897569|attR 1957158:1957178

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1897549:1897569	attL	NA	NA	NA	NA
WP_059597134.1\|1900654_1902346_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_159082875.1\|1902405_1902597_-	hypothetical protein	NA	NA	NA	NA
WP_059597005.1\|1903571_1904144_+	isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_059470017.1\|1904311_1904692_-\|transposase	transposase	NA	NA	NA	NA
WP_059597133.1\|1904955_1906251_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_082722211.1\|1906376_1907657_-	MFS transporter	NA	NA	NA	NA
WP_082716279.1\|1907629_1908325_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_082722210.1\|1908869_1909193_+	H-NS histone family protein	NA	NA	NA	NA
WP_108033922.1\|1909245_1910062_+\|transposase	IS5-like element ISBcen20 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.5e-07	35.0
WP_159082876.1\|1910889_1911312_-	hypothetical protein	NA	NA	NA	NA
WP_059471590.1\|1913558_1915217_+	DUF2875 family protein	NA	NA	NA	NA
WP_059598449.1\|1915226_1915490_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_059598450.1\|1915775_1916702_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_059598451.1\|1916698_1917961_-	AMP-binding protein	NA	NA	NA	NA
WP_059598452.1\|1918002_1920408_-	long-chain-fatty-acyl-CoA reductase	NA	NA	NA	NA
WP_059598453.1\|1920409_1921540_-	acyl-protein synthase	NA	NA	NA	NA
WP_059598454.1\|1921569_1922826_-	MdfA family multidrug efflux MFS transporter	NA	NA	NA	NA
WP_059598456.1\|1923840_1924392_+	hypothetical protein	NA	NA	NA	NA
WP_082722459.1\|1924658_1925921_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_059597361.1\|1926772_1927006_+	hypothetical protein	NA	NA	NA	NA
WP_059597362.1\|1927060_1927861_+	Fic family protein	NA	NA	NA	NA
WP_059471607.1\|1928169_1928490_+	H-NS histone family protein	NA	NA	NA	NA
WP_159082877.1\|1929871_1932151_-	hypothetical protein	NA	NA	NA	NA
WP_082722281.1\|1934317_1935376_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_108033924.1\|1935907_1937803_+	hypothetical protein	NA	NA	NA	NA
WP_082722283.1\|1937846_1939091_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	1.3e-18	28.9
WP_059597367.1\|1939126_1940365_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_162498961.1\|1940427_1941351_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_059597368.1\|1941351_1942203_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_059597369.1\|1942207_1944349_+	alpha-galactosidase	NA	NA	NA	NA
WP_108033925.1\|1944546_1946454_+	hypothetical protein	NA	NA	NA	NA
WP_082722286.1\|1946588_1946906_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_159082878.1\|1947031_1948063_+	hypothetical protein	NA	NA	NA	NA
WP_059597370.1\|1948589_1949288_+	response regulator transcription factor	W8CYM9	Bacillus_phage	4.4e-21	31.7
WP_159082879.1\|1949541_1952013_+	hypothetical protein	NA	NA	NA	NA
WP_059597372.1\|1952085_1952772_+	OmpA family protein	NA	NA	NA	NA
WP_108033926.1\|1952773_1954177_+	hypothetical protein	D6PFH9	uncultured_phage	2.5e-15	27.3
WP_108033922.1\|1954263_1955080_+\|transposase	IS5-like element ISBcen20 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.5e-07	35.0
1957158:1957178	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2306879 : 2397661

Tupanvirus(37.5%)

coat,integrase,plate

attL 2308806:2308824|attR 2419021:2419039

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059597823.1\|2306879_2307845_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_059597824.1\|2307860_2310269_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
2308806:2308824	attL	NA	NA	NA	NA
WP_059597825.1\|2310313_2311153_-	molecular chaperone	NA	NA	NA	NA
WP_059597826.1\|2311170_2311695_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_059474120.1\|2311777_2312338_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_059474204.1\|2312390_2312936_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_059597827.1\|2313758_2314652_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_059474118.1\|2315096_2316335_+	MFS transporter	NA	NA	NA	NA
WP_059597828.1\|2316380_2317307_+	amidohydrolase family protein	NA	NA	NA	NA
WP_059474116.1\|2317787_2318069_+	H-NS histone family protein	NA	NA	NA	NA
WP_059597829.1\|2318495_2318759_-	hypothetical protein	NA	NA	NA	NA
WP_059474114.1\|2319426_2320083_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_059597830.1\|2320398_2321349_-	LysR family transcriptional regulator	A0A2H4J8I9	uncultured_Caudovirales_phage	3.2e-06	37.3
WP_059597851.1\|2321491_2322340_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_059474111.1\|2322364_2323525_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA
WP_059597831.1\|2323537_2324716_+	CoA transferase	NA	NA	NA	NA
WP_059597832.1\|2324790_2326173_+	MFS transporter	NA	NA	NA	NA
WP_059597833.1\|2326561_2327401_-	CoA ester lyase	NA	NA	NA	NA
WP_159082887.1\|2327439_2328153_-	hypothetical protein	NA	NA	NA	NA
WP_059597835.1\|2330465_2332316_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_059474104.1\|2334398_2334647_+	MbtH family NRPS accessory protein	NA	NA	NA	NA
WP_082716595.1\|2334656_2335409_+	thioesterase	NA	NA	NA	NA
WP_059597836.1\|2335482_2336928_+	peptide synthetase	NA	NA	NA	NA
WP_059597837.1\|2337060_2354223_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	7.7e-82	23.6
WP_082722354.1\|2354259_2365320_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.9e-126	26.0
WP_059597839.1\|2365327_2370871_+	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	5.2e-72	24.8
WP_082716592.1\|2370918_2371719_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_059597840.1\|2371984_2374180_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_059597852.1\|2374280_2375048_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	3.9e-10	26.9
WP_059597841.1\|2375049_2375979_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_082722355.1\|2375975_2377994_+	Fe(3+)-hydroxamate ABC transporter permease FhuB	NA	NA	NA	NA
WP_059597842.1\|2378026_2379730_+	cyclic peptide export ABC transporter	A0A2H4PQG7	Staphylococcus_phage	7.8e-11	28.0
WP_059597843.1\|2379776_2382239_+	acylase	NA	NA	NA	NA
WP_156438458.1\|2382304_2383093_+	hypothetical protein	NA	NA	NA	NA
WP_059597844.1\|2383282_2383483_-	hypothetical protein	NA	NA	NA	NA
WP_059597845.1\|2384547_2386308_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_159082888.1\|2386412_2386742_-	hypothetical protein	NA	NA	NA	NA
WP_159082889.1\|2386779_2387142_-	hypothetical protein	NA	NA	NA	NA
WP_082722357.1\|2387239_2387569_-	colicin immunity protein	NA	NA	NA	NA
WP_059597846.1\|2392440_2392668_+	hypothetical protein	NA	NA	NA	NA
WP_162498949.1\|2392681_2392840_+	hypothetical protein	B5BTX7	Ralstonia_phage	1.2e-14	73.1
WP_059471300.1\|2393476_2394259_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.2e-36	37.1
WP_059597986.1\|2396272_2397661_+\|integrase	integrase family protein	NA	NA	NA	NA
2419021:2419039	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3714601 : 3815842

108

Burkholderia_phage(56.67%)

transposase,tail,protease,lysis,plate,tRNA,holin,capsid,terminase,portal,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059597921.1\|3714601_3715627_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_059471504.1\|3715917_3717105_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	5.8e-122	61.0
WP_059471503.1\|3717371_3718256_+	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA
WP_059471502.1\|3718285_3719170_+	diaminopimelate epimerase	NA	NA	NA	NA
WP_059471501.1\|3719201_3719915_+	DUF484 family protein	NA	NA	NA	NA
WP_059471500.1\|3719955_3720876_+	tyrosine recombinase XerC	G1JX48	Mycobacterium_phage	6.9e-14	29.8
WP_059596299.1\|3720941_3722222_+	class I SAM-dependent rRNA methyltransferase	NA	NA	NA	NA
WP_059471498.1\|3722400_3723483_+	GTP-binding protein	NA	NA	NA	NA
WP_059471496.1\|3724174_3724591_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_059471495.1\|3724825_3725362_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_059471494.1\|3725372_3726716_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	3.1e-39	28.2
WP_010100880.1\|3726901_3727444_-	response regulator transcription factor	NA	NA	NA	NA
WP_059471493.1\|3727463_3728744_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_059471492.1\|3728761_3729004_-	cysteine-rich CWC family protein	NA	NA	NA	NA
WP_059471491.1\|3729329_3730229_+	acetylglutamate kinase	NA	NA	NA	NA
WP_059471490.1\|3730225_3731029_+	pyrimidine 5'-nucleotidase	NA	NA	NA	NA
WP_059596300.1\|3730995_3731688_+	nucleoid occlusion factor SlmA	NA	NA	NA	NA
WP_059596301.1\|3732492_3733638_+	homoserine O-acetyltransferase	NA	NA	NA	NA
WP_059596302.1\|3733634_3734249_+	methionine biosynthesis protein MetW	NA	NA	NA	NA
WP_059596303.1\|3734258_3735572_+	AmpG family muropeptide MFS transporter	NA	NA	NA	NA
WP_059471485.1\|3735561_3736626_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_059471484.1\|3736729_3737674_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_059471483.1\|3737895_3738960_+	NAD(P)-dependent alcohol dehydrogenase	A0A2K9L339	Tupanvirus	9.9e-81	46.4
WP_010100857.1\|3739186_3739957_-	exodeoxyribonuclease III	R4TWA8	Phaeocystis_globosa_virus	1.4e-28	32.7
WP_059596304.1\|3739986_3740826_-	polyphosphate kinase	NA	NA	NA	NA
WP_059471481.1\|3740953_3742441_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_059596305.1\|3742443_3743934_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_059471479.1\|3744049_3744349_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_004189550.1\|3744713_3745757_+	rod shape-determining protein	NA	NA	NA	NA
WP_059471478.1\|3745876_3746944_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_059596306.1\|3746940_3747453_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_059596307.1\|3747636_3749985_+	penicillin-binding protein 2	NA	NA	NA	NA
WP_059471475.1\|3749996_3751145_+	rod shape-determining protein RodA	NA	NA	NA	NA
WP_059471474.1\|3751390_3752167_-	sel1 repeat family protein	NA	NA	NA	NA
WP_059471473.1\|3752163_3752949_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA
WP_059596308.1\|3753426_3753708_-	hypothetical protein	NA	NA	NA	NA
WP_059471471.1\|3753758_3754211_-	6-carboxytetrahydropterin synthase QueD	A0A088FAL2	Vibrio_phage	2.6e-14	31.4
WP_059471470.1\|3754230_3754863_-	7-carboxy-7-deazaguanine synthase	R4TAH8	Halovirus	2.8e-06	30.9
WP_059471469.1\|3754951_3755686_-	7-cyano-7-deazaguanine synthase QueC	A0A1B0Z0B4	Vibrio_phage	5.6e-51	43.5
WP_059596309.1\|3756633_3757137_+	hypothetical protein	NA	NA	NA	NA
WP_059596310.1\|3757149_3757755_+	ImmA/IrrE family metallo-endopeptidase	Q332A2	Clostridium_botulinum_C_phage	4.1e-07	30.1
WP_059473839.1\|3758264_3758747_+	DUF2778 domain-containing protein	NA	NA	NA	NA
WP_059473840.1\|3758743_3759022_+	hypothetical protein	NA	NA	NA	NA
WP_059473841.1\|3759227_3759500_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	6.9e-47	97.8
WP_059473851.1\|3759459_3759732_-	BrnT family toxin	K4NX81	Burkholderia_phage	1.9e-44	96.7
WP_108033978.1\|3759845_3760901_-\|portal	phage portal protein	A4JWV0	Burkholderia_virus	1.2e-203	98.0
WP_108033979.1\|3760897_3762667_-\|terminase	terminase ATPase subunit family protein	K4NXI4	Burkholderia_phage	0.0e+00	95.9
WP_059596552.1\|3762810_3763620_+\|capsid	GPO family capsid scaffolding protein	K4PAW2	Burkholderia_phage	9.1e-135	91.1
WP_059596553.1\|3763653_3764664_+\|capsid	phage major capsid protein, P2 family	A4JWP9	Burkholderia_virus	4.4e-179	93.8
WP_059596554.1\|3764660_3765350_+\|terminase	terminase endonuclease subunit	K4NX86	Burkholderia_phage	1.1e-109	93.0
WP_059596555.1\|3765449_3765929_+\|head	head completion/stabilization protein	A4JWU5	Burkholderia_virus	1.1e-79	98.1
WP_059596556.1\|3765928_3766180_+	hypothetical protein	K4NXI9	Burkholderia_phage	2.2e-39	98.8
WP_004524438.1\|3766176_3766383_+\|tail	tail protein	K4PAW7	Burkholderia_phage	2.4e-31	100.0
WP_059596557.1\|3766397_3766742_+	hypothetical protein	K4NZQ3	Burkholderia_phage	2.9e-50	99.1
WP_004524440.1\|3766743_3767016_+\|holin	phage holin family protein	K4NX91	Burkholderia_phage	8.8e-42	100.0
WP_059596558.1\|3767012_3767825_+	DUF3380 domain-containing protein	A4JWZ0	Burkholderia_virus	2.0e-145	95.6
WP_059596559.1\|3767821_3768262_+\|lysis	LysB family phage lysis regulatory protein	K4NXJ2	Burkholderia_phage	4.9e-58	82.2
WP_059596560.1\|3768239_3768374_+	hypothetical protein	K4PAX1	Burkholderia_phage	6.4e-14	88.6
WP_059596561.1\|3768366_3768783_+\|tail	phage tail protein	A4JWT7	Burkholderia_virus	7.1e-67	93.5
WP_082722142.1\|3768779_3769247_+	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	1.7e-72	92.9
WP_159082916.1\|3769307_3770534_-	hypothetical protein	NA	NA	NA	NA
WP_050042433.1\|3770755_3770956_+	hypothetical protein	E5E3V8	Burkholderia_phage	7.4e-14	79.2
WP_082722147.1\|3770944_3771715_-	site-specific DNA-methyltransferase	K4NZW3	Burkholderia_phage	9.2e-129	88.7
WP_059596563.1\|3771889_3772570_+\|plate	phage baseplate assembly protein V	K4NXJ5	Burkholderia_phage	1.3e-115	92.9
WP_050042429.1\|3772566_3772929_+\|plate	baseplate assembly protein	K4PAX6	Burkholderia_phage	2.1e-59	95.8
WP_059596564.1\|3772925_3773831_+\|plate	baseplate assembly protein	K4NZR5	Burkholderia_phage	5.5e-149	92.4
WP_059596565.1\|3773823_3774378_+\|tail	phage tail protein I	A4JWT0	Burkholderia_virus	9.7e-96	94.6
WP_059596566.1\|3774379_3776752_+	hypothetical protein	Q45YG3	Burkholderia_virus	0.0e+00	82.5
WP_059596567.1\|3776768_3777437_+\|tail	phage tail protein	A4JWS8	Burkholderia_virus	3.3e-106	95.3
WP_059596568.1\|3777493_3778666_+\|tail	phage tail sheath protein	A4JWS7	Burkholderia_virus	1.5e-215	95.6
WP_059596569.1\|3778681_3779191_+\|tail	phage major tail tube protein	K4NZR9	Burkholderia_phage	3.3e-90	95.3
WP_059596570.1\|3779247_3779592_+\|tail	phage tail assembly protein	K4NXA3	Burkholderia_phage	3.4e-51	94.7
WP_044368053.1\|3779600_3779714_+\|tail	GpE family phage tail protein	A0A089FGX3	Burkholderia_phage	1.0e-12	91.9
WP_059596571.1\|3779716_3782677_+	hypothetical protein	A4JWS3	Burkholderia_virus	0.0e+00	83.7
WP_059596572.1\|3782694_3783120_+\|tail	phage tail protein	A4JWS2	Burkholderia_virus	8.3e-71	97.9
WP_059596573.1\|3783119_3784220_+	phage late control D family protein	K4PAY4	Burkholderia_phage	1.1e-194	95.4
WP_059596574.1\|3784233_3784665_-	hypothetical protein	A0A089FKT7	Burkholderia_phage	5.8e-72	96.5
WP_059596575.1\|3785099_3785822_-	hypothetical protein	K4NZS4	Burkholderia_phage	1.3e-113	90.8
WP_059596576.1\|3785873_3786332_-	helix-turn-helix transcriptional regulator	E5E3P4	Burkholderia_phage	1.2e-59	80.8
WP_082722144.1\|3786655_3786952_+	DNA-binding protein	E5E3P2	Burkholderia_phage	1.2e-36	83.1
WP_059596577.1\|3786939_3787188_+	ogr/Delta-like zinc finger family protein	K4PAZ0	Burkholderia_phage	9.8e-40	97.6
WP_059596578.1\|3787273_3787822_+	Bro-N domain-containing protein	K4NZS9	Burkholderia_phage	1.4e-83	89.0
WP_059596579.1\|3787837_3788056_+	hypothetical protein	K4NXB1	Burkholderia_phage	1.3e-32	93.1
WP_045599893.1\|3788061_3788259_+	hypothetical protein	K4NZY3	Burkholderia_phage	7.5e-27	93.8
WP_059596580.1\|3788302_3788497_+	hypothetical protein	K4NXL1	Burkholderia_phage	1.1e-25	96.9
WP_059596581.1\|3788500_3788740_+	hypothetical protein	K4PAZ5	Burkholderia_phage	4.8e-28	79.7
WP_059596582.1\|3788908_3789115_+	hypothetical protein	K4NZT3	Burkholderia_phage	4.9e-21	69.1
WP_059596586.1\|3789117_3789480_+	hypothetical protein	K4NXB4	Burkholderia_phage	7.5e-57	94.9
WP_059596583.1\|3789476_3789731_+	hypothetical protein	A4JWQ9	Burkholderia_virus	1.8e-36	92.9
WP_108033980.1\|3789742_3792535_+	hypothetical protein	K4NXL6	Burkholderia_phage	0.0e+00	97.8
WP_076836148.1\|3793235_3793577_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_059598193.1\|3794604_3795291_-	response regulator	NA	NA	NA	NA
WP_059471467.1\|3795291_3797700_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_059471466.1\|3797701_3798292_-	DUF4390 domain-containing protein	NA	NA	NA	NA
WP_059471465.1\|3798288_3799701_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_010113215.1\|3800344_3801202_-\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
WP_059471464.1\|3801310_3801946_-	LysE family translocator	NA	NA	NA	NA
WP_059471463.1\|3802066_3803050_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.8e-07	36.3
WP_059471462.1\|3803081_3803585_-	peptide deformylase	A0A067XQZ3	Caulobacter_phage	4.2e-13	31.5
WP_059471461.1\|3803820_3805008_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	8.1e-23	39.2
WP_059471460.1\|3805067_3805439_+	thioredoxin family protein	NA	NA	NA	NA
WP_059598192.1\|3805649_3808259_+	DNA topoisomerase III	A0A2P1ELA0	Moumouvirus	1.0e-17	25.3
WP_059471458.1\|3808470_3809526_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_059471457.1\|3809965_3810982_+	D-2-hydroxyacid dehydrogenase family protein	NA	NA	NA	NA
WP_059471456.1\|3811094_3811964_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_059471455.1\|3812002_3812407_-	PaaI family thioesterase	NA	NA	NA	NA
WP_108033981.1\|3813561_3814884_-\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	1.1e-60	52.5
WP_108033982.1\|3815084_3815842_-\|transposase	IS5 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013387

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013387_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013387_1

2728193-2728287

Orphan

Consensus_repeat	Method
TGCCGCAGTATCAGGATCCGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013387_1

>merge|NZ_CP013387|1|2728193-2728287|CRISPRCasFinder
TGCCGCAGTATCAGGATCCGGGCGAGGGCGCGGGCGGCGGCGCTGAAGGCGGCGGGCGCGAGCCGGCCGGGCTGCCGCAGTATCAGGATCCCGGC

>NZ_CP013387|1|1|2728193-2728287|CRISPRCasFinder
TGCCGCAGTATCAGGATCCGGGC	GAGGGCGCGGGCGGCGGCGCTGAAGGCGGCGGGCGCGAGCCGGCCGGGC
TGCCGCAGTATCAGGATCCCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013387.1\|WP_162499010.1\|2734082_2734556_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236545
NZ_CP013387.1\|WP_059597721.1\|2729157_2730504_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|236027
NZ_CP013387.1\|WP_059597743.1\|2707560_2708343_-\|outer-membrane-lipoprotein-sorting-protein	unknown	unknown	gnl\|CDD\|379924
NZ_CP013387.1\|WP_059597725.1\|2709826_2710528_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP013387.1\|WP_059472347.1\|2734604_2735312_-\|phosphorylase	unknown	unknown	gnl\|CDD\|235926
NZ_CP013387.1\|WP_059597720.1\|2730500_2731571_-\|peptidase-C45	unknown	unknown	gnl\|CDD\|367486
NZ_CP013387.1\|WP_059472311.1\|2733029_2733782_-\|glutamine-ABC-transporter-substrate-binding-protein-GlnH	unknown	unknown	gnl\|CDD\|236540
NZ_CP013387.1\|WP_059472307.1\|2728551_2729115_-\|4-carboxymuconolactone-decarboxylase	unknown	unknown	gnl\|CDD\|367130
NZ_CP013387.1\|WP_059597226.1\|2737658_2738507_-\|presqualene-diphosphate-synthase-HpnD	unknown	unknown	gnl\|CDD\|163278
NZ_CP013387.1\|WP_059472296.1\|2705807_2706206_-\|DUF4345-domain-containing-protein	unknown	unknown	gnl\|CDD\|372978
NZ_CP013387.1\|WP_059472310.1\|2731583_2732312_-\|glutamine-ABC-transporter-ATP-binding-protein-GlnQ	unknown	unknown	gnl\|CDD\|181906
NZ_CP013387.1\|WP_059597742.1\|2732308_2732965_-\|glutamine-ABC-transporter-permease-GlnP	unknown	unknown	gnl\|CDD\|181907
NZ_CP013387.1\|WP_108034109.1\|2716141_2722561_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187617
NZ_CP013387.1\|WP_059597726.1\|2708399_2709827_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
NZ_CP013387.1\|WP_059597722.1\|2722663_2724220_-\|acyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|214838
NZ_CP013387.1\|WP_059597224.1\|2735318_2737310_-\|squalene--hopene-cyclase	unknown	unknown	gnl\|CDD\|239222
NZ_CP013387.1\|WP_059472305.1\|2724806_2727440_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|274598
NZ_CP013387.1\|WP_059472301.1\|2710527_2711997_-\|NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|109787
NZ_CP013387.1\|WP_059597724.1\|2712029_2716145_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|365848
NZ_CP013387.1\|WP_059597727.1\|2706244_2707564_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013387.1\|WP_162499010.1\|2734082_2734556_-\|hypothetical-protein	gnl\|CDD\|236545	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional.	5.39791e-09
NZ_CP013387.1\|WP_059597721.1\|2729157_2730504_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|236027	PRK07483, PRK07483, aspartate aminotransferase family protein.	0
NZ_CP013387.1\|WP_059597743.1\|2707560_2708343_-\|outer-membrane-lipoprotein-sorting-protein	gnl\|CDD\|379924	pfam17131, LolA_like, Outer membrane lipoprotein-sorting protein. This is likely to be a family of outer-membrane lipoprotein-sorting proteins.	5.7963e-43
NZ_CP013387.1\|WP_059597725.1\|2709826_2710528_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	6.91276e-102
NZ_CP013387.1\|WP_059472347.1\|2734604_2735312_-\|phosphorylase	gnl\|CDD\|235926	PRK07077, PRK07077, phosphorylase.	4.34211e-100
NZ_CP013387.1\|WP_059472311.1\|2733029_2733782_-\|glutamine-ABC-transporter-substrate-binding-protein-GlnH	gnl\|CDD\|236540	PRK09495, glnH, glutamine ABC transporter periplasmic protein; Reviewed.	1.1507e-159
NZ_CP013387.1\|WP_059472307.1\|2728551_2729115_-\|4-carboxymuconolactone-decarboxylase	gnl\|CDD\|367130	pfam02627, CMD, Carboxymuconolactone decarboxylase family. Carboxymuconolactone decarboxylase (CMD) EC:4.1.1.44 is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway. In these bifunctional proteins CMD represents the C-terminal domain, pfam00561 represents the N-terminal domain.	0.00168358
NZ_CP013387.1\|WP_059597226.1\|2737658_2738507_-\|presqualene-diphosphate-synthase-HpnD	gnl\|CDD\|163278	TIGR03465, HpnD, squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.	6.82205e-106
NZ_CP013387.1\|WP_059472296.1\|2705807_2706206_-\|DUF4345-domain-containing-protein	gnl\|CDD\|372978	pfam14248, DUF4345, Domain of unknown function (DUF4345). This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 125 and 141 amino acids in length. There is a single completely conserved residue E that may be functionally important.	2.39037e-22
NZ_CP013387.1\|WP_059472310.1\|2731583_2732312_-\|glutamine-ABC-transporter-ATP-binding-protein-GlnQ	gnl\|CDD\|181906	PRK09493, glnQ, glutamine ABC transporter ATP-binding protein GlnQ.	5.4099e-173
NZ_CP013387.1\|WP_059597742.1\|2732308_2732965_-\|glutamine-ABC-transporter-permease-GlnP	gnl\|CDD\|181907	PRK09494, glnP, glutamine ABC transporter permease protein; Reviewed.	6.63025e-125
NZ_CP013387.1\|WP_108034109.1\|2716141_2722561_-\|SDR-family-oxidoreductase	gnl\|CDD\|187617	cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs. This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	1.66882e-99
NZ_CP013387.1\|WP_059597726.1\|2708399_2709827_-\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	8.75068e-32
NZ_CP013387.1\|WP_059597722.1\|2722663_2724220_-\|acyltransferase-domain-containing-protein	gnl\|CDD\|214838	smart00827, PKS_AT, Acyl transferase domain in polyketide synthase (PKS) enzymes.	3.87439e-53
NZ_CP013387.1\|WP_059597224.1\|2735318_2737310_-\|squalene--hopene-cyclase	gnl\|CDD\|239222	cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.	0
NZ_CP013387.1\|WP_059472305.1\|2724806_2727440_+\|MMPL-family-transporter	gnl\|CDD\|274598	TIGR03480, HpnN, hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.	0
NZ_CP013387.1\|WP_059472301.1\|2710527_2711997_-\|NAD(P)-binding-domain-containing-protein	gnl\|CDD\|109787	pfam00743, FMO-like, Flavin-binding monooxygenase-like. This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases.	3.5146e-71
NZ_CP013387.1\|WP_059597724.1\|2712029_2716145_-\|cytochrome-P450	gnl\|CDD\|365848	pfam00067, p450, Cytochrome P450. Cytochrome P450s are haem-thiolate proteins involved in the oxidative degradation of various compounds. They are particularly well known for their role in the degradation of environmental toxins and mutagens. They can be divided into 4 classes, according to the method by which electrons from NAD(P)H are delivered to the catalytic site. Sequence conservation is relatively low within the family - there are only 3 absolutely conserved residues - but their general topography and structural fold are highly conserved. The conserved core is composed of a coil termed the 'meander', a four-helix bundle, helices J and K, and two sets of beta-sheets. These constitute the haem-binding loop (with an absolutely conserved cysteine that serves as the 5th ligand for the haem iron), the proton-transfer groove and the absolutely conserved EXXR motif in helix K. While prokaryotic P450s are soluble proteins, most eukaryotic P450s are associated with microsomal membranes. their general enzymatic function is to catalyze regiospecific and stereospecific oxidation of non-activated hydrocarbons at physiological temperatures.	1.19853e-73
NZ_CP013387.1\|WP_059597720.1\|2730500_2731571_-\|peptidase-C45	gnl\|CDD\|367486	pfam03417, AAT, Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase.	1.88024e-53

>NZ_CP013387.1|WP_059472305.1|2724806_2727440_+|MMPL-family-transporter
MLTSVLVRLVAWSVRRPIWVVVLSLVVAALSSVYVAHHFKINTDISKLVENDPQWAALGDAIDDAFPQRSQTILAVVEAPAPEFATAAADALADGLRRETEAGRIGQVSEPGGGPLFEHNGLLFLPQQDVATTTAQLASARPLINVLAKDPSIAGLATTLSTTLGVPLQSGQVKLSGMAKLLSRSAATVDDVLAGKPAAFSWRALVDTDAAREPARTFVTVQPVVNYGALKAGEQTSRTIRATAQALQLDKRFGAVVRLTGEQPLADEEFASVEDGAAVNGIATLVIVLVILWIALRSKRMIASVFVTLFVGLVVTAALGLMMVGSLNMISVAFMVLFVGLGVDFAIQYGVKYREERHRAPNLEHALVGAAHAMGMPLTLATAAVAASFFSFLPTAYRGVSELGLIAGVGMFVALFTTMTLLPALIKLFAPPGERKPPGFPRLAPVDDYLDHHRKPILIGTLAVVIGALPLLTHLRFDFNPLHLKDPGSESMATLLALKDSPEASVNDVSMLAPSLAAADAAAKRLEALPEVGRTTTLSTFIPDAQPPKLATIAAAARDLLPALTQPAAAPVSDAQRVAALKRASNLLEYASEDYPGPGAAAAKHLSESLAKLAAADSATRDRAENAFSAPLKIALNQLAMLLQPSEITRENLPPQIARDWIAPDGRALVQISPKVPKGVDPGDDAMLRRFAKAVKAAEPGAIGGPISILHSADTIIRAFLQAAALSVVSITVLLWITLRRFGDVLRTLVPLLVSGVVTLELCVLFGMPLNFANIIALPLMLGVGVAFKVYFVMAWRAGQTGLLQSSLTHAVLFSAATTATAFGSLWLSHHPGTASMGRLLALALSCTLIGAVVFQPVLMGKPRTKRVTNQLQGIDE
>NZ_CP013387.1|WP_059597722.1|2722663_2724220_-|acyltransferase-domain-containing-protein
MVQVAFLFPGQGAFHAGATRALSGAYPAVQRAMQAIDAVSVRRLRRPLLATLWDEHVGVEDLLQYAPDLLQLAIYATSISYFEALRARAVRPDVLVGHSFGEIAALTCGGAFSIEEGADIVCDRIDALRAAAPAGGRMAAVSASPDAVRAHLAACFRGAPEERKGRVQIAVENHASQTVVSGAQEYVDEFSAYCIRNNTSAQILNSPYAFHHDDLENARIEFGRRLKAYRNKALEYPVYSPILNRYYSAADDLGACLARHLVLPVRFGDGVARLKAAGVGALVECGALNVLSKIAVRALGPGAIKTFPGASSVGGELGGLENVLAYFNGGSVMNDDIRASHLQLDFDEFWRDSGPGIVEKIKGELKRYFDARGLQATPAPQIVTERGGAAGFAPAAHAAAASVSPAAQAPAAPIVQAPAAPAAAPTAHVPRDRLFTELVAIYAEAMEYPVEVFTETVELEAELGIDSVKQTEIIQRITARYGLPPLPANFRAGDFKAMGQIVDFVHEHQGKAAALVMS
>NZ_CP013387.1|WP_108034109.1|2716141_2722561_-|SDR-family-oxidoreductase
MSNSYLKGKRVLVTGGAKNVGKAICRRFAEEGAHVIVNFFHSLDASKETAAELRALGATVDVVRASVAQPAQVERMFDEIEAKYGKLDILVNNAASGALLPVDDIDAAHFDRALDTNLKGAFWCARRAARLMARAGGGAIVNVSSVGSTLVPANYLVVGTAKAALESLTRYLAVEYASLGIRVNGASSTLIDGDVAAQFPDPDNTKRSSIAATPLGRLATAEDLADVVLFLASDAARWITGQVIVADGGLSLCSEALSPRREWRAAADSALPNGDVAPSSTAFPSRASAGAAPATSAAPHDAGLGAPDAESASEDDADEIAVVGMGVALPGASDPEAFWQALLNGPELFGNVPPDRWDYRSFYSPDPLAEDKSYQSRSVFIERFEPEARLRAEIEAAAAPGELTTLWLRHSLRQALDGVRVRAGDRTSFLVGYTADGSQHLEEGMVLAAMRARLRDALDEAGASPDERERRIAQIDAVLRARYARGTGELSEFFPHRVGLNAMRGVLPDDAEYMMVDTACSSSLYSVDLGIKSLLAGKHDVVACGGAFALAPRGSILFSKLHGLSRSGEVRPLDKACDGVLFADGAGVVILKRLKRALADGDRVLGVLKAFGSSSDGKGKAIYAPNSAGQRIAIDRAYRQADVPKDAVDWVVAHATGTPAGDLAEFQSLRDMLKRDRPVYVTSNKSLVGHTGWAAGVVSLIQVLLALEHGRIPPQHRFSEPPQEFDIDASGFTIPTRAVDWPRKTDAARVAAVSGFGFGGTNGHLIVGEYRPDLRASKPAARVNREPLAIVGWSAKFPGLDGRDAIAAWLNGASAAPGASFGLTYPLPSFDRVRMPPAVLRALDRCQLMALDAAHDMREQLRDYWGAHANAIGVVMGHMGPTRNAALYASRCYLDDIATAVRASVDDASRPALDDALARVAEKTKRLVPPTTENSFPGMMPNVIPARVANYHDLHGMNMTVDAGHASTLAAFEVASRFLRSGELDMVIVGGINGNSADEVQPAFDRSLAEGIVLFAVTTKAQADAAGLPVLAWVESDRAFADASAPQRALRDADGREVTYAGADGALAVLRALVGREDAASVALGNDRDRVRFGLRVDRNAPPVGDESTRTHAVSDAPGVDAPGVSSAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPSAPVSSHLSISSSTPVAASASTAHAVAPLAPLATTVRTESTAPVAPPVAAASTEKRVPIPATLKATDVAADGEPLGVARYRIDLQETPWHAGAGAIAYLPAGSVVVTDAPELLDGIGMLPADLLVLSTRTTTFSRARLVVVDTLGEAALRGLIPAGTRHVRLLTSLHTSVLAPDRLSAPSPGRLKLHDLAFLALKQCYDGVAQQGSFIALLLDAVKEDVLHPDAGMFTGLVKALAIELPNARSLAVLTDDADIRQGVAQTERESGAQHLLPVVALCGGRRLTPRVTRDAGELPADGFARLDPDSVVVAFGGARGITAELMKAVAEHFQPTIYLIGSSGLDAYGPDVFAGSDEAFARRRPDYIREQKALNPHLPLPAIIKAFERQVDARAARRNIDVMKSYCGPNKVFYLRADVLDAGSVRAAVDKIVAAGQPIDFVVNAAGLNRSASVNVKSFDDFVAVRDIKIRGYWNVRDAFGAAQPRAWCNFGSFIGLTGQAGETDYASGNDFLNTQAAYHRAALARDEFTIGWTLWRSVGLGANPVTRAFLEKSGLFTSMRTNEGIHHFLRELNLTERAASSVHLGAAERRAIEAHLPTFFEAPESAPAARTERSVQPRSYAPNVQAAPGARAGQPAQRSSHPTPPRDRIAPPPSHDFYLGREVRRTSDSVTFERIFDLRTDAYLQHHVVNRFATLPGTFVPELAAEAAMKLLPGLRVVGFRDAAFRHFLRVYDAQRPSTKRIHAQVVGREGDAAVVQVRITGDVLAPNGQVLVQDKLHFEIKALVAPRYASAPVWPMRPDEPRTPVADPYHFESAPVRLTGMFVSTADTGVTASGKVARYQLNVAPGDPVFSRFVVPSIMLDGLARVAVLNYVAGDYIPLAAPVSIGRIDLYEGGNDCELARRYDRIDLYATPREFALDGAHAGNRFAAVRSDGRMLMEMSGVSGVVIGYVHRTTGAYATKAEVDALAARLATERETA
>NZ_CP013387.1|WP_059597724.1|2712029_2716145_-|cytochrome-P450
MSKHRQAPGPRGSLVMGNLAAYKRNPITMLLRLHQQYGDVARNRLGPFVTHALAHPDHVQYVLQENHRNYVRGRFYDNFKMFFGDGLLTTDGEFWRRHRRAVQPLFHKKQVDAHTAAVGDAALALAHRWSALPPGKSIDVVEEMMHLSLRMLGLMVFNTDVSTHAEAVGPAVRFGIEAMMPQGNMNDFIPRWAPTRFNRRIAHARRAIDTIIAKIIADHRDERCEPSDVISLLLNARDPDTGAPMTQQEVHDEVMTVFLAGHETTGAGLAWALYALAQHPAVLRQLRDELDARLGGRAPTVQDFEQLPYLSQVVDEVLRVYPPIWGFTRDLVEDDEIGGYRIPARSSVFMSPYVTHRHPAFWRNPDAFDPENFASEAAARHRFVYFPFGGGMRKCIGFQTALLQMRVLVAVVAQHFDLNALPGHPIELGATISLRPVHGIRLVVKPRERQQSHLARVREHEAARALRPLGDTVEPTGAACPMAAAGEIGASAAAGAAAESAQALDVAHASGPAVADERAANRQHADAARLSLATPSTAAPRDAAADASARGVPAWRFTWRPAPVDPVPDAPSPALSGKRIALVNGRGGTVERITAALARTCTKVSVFAPAANADYAEAARTFVNEAGPFDGIVDLGLEAPFTLDDASAWEAPMRRTVELLKACYGDWAAEDDTSRLFYVALTWMDGMMGYGDAAAGAQPLGGLWAGLAKTLPQELPNCNVRVLDIAPDETGRVDRLVVNELYRWGFFEVGYRQGVRYTLHARRNELPPLAVDARASLAPGDTVLFSGGARGIGLLCARALAERHGCTVIVTGREASPDGSEPWMALDDEGFKRYGLEQLRAATPDNPPKAIRAMLQRLKRRRELKAALDEMAALDLPVRYRVCDVTDRAAVRALCDELGDSLRMVIHNAGVDQPVRLIQKGADDFARTVRTKVLGFANLCDAVRTRPRLVQFCNVGSLTGRWGGMTGETDYAAANEGLARLGLWAAKHALPPACGVKTLVWPTWEGVGMITNFAVTQRYITPMNVDEGVRHWLRELASPGSGEVMFMGAVGRAPTPVQIKGFLPIRELPNIGELVTRRHHVGEPLRFRPFKRFEGRYAIDPAVAPYAHAFRFNGRAVLPASLVLEHACAVGDWVMPPTGEPRDLSEMTNVVLRLDALPDVSNGGAPVEIGSEAAGYMIGDAWCVDVRCSDARTQAELLSMTLVYRTEPEQIGAAYARPPDATLEPSRLTSAPHAAWNGDLLPAGDWSVPDDASAGIVRIGRVPPAAVLSLWTLPFPLELRLPVNHVEHVLRVLLAEWGAAQSDAPAVWRIGGAKLARLPASSADGVVEYATGRFAMIDARGYVLLRLDDTRVDAAQATQPEAGALADPLTA
>NZ_CP013387.1|WP_059472301.1|2710527_2711997_-|NAD(P)-binding-domain-containing-protein
MTTTKATTEPTAATAASANRDCSNRYCIIGGGAAGIATAKNLREHGIAFDLIEREDGIGGTWYYGKPCSAIYKSVHMISSRAFSEYTDYPMPADYPTYARGDQALAYLRDYARRFGVYEHAEFNRTVLEVAPLADGGLWRVELDGHEVRHYKGVFVCNGHLSKPQVPDYPGRFDGLQLHSALYKTPDVLKDKRVLVVGAGNSGCDIAVEAVHHARAVFHSTRRGYYYWPKFLFGIPADRWAEWPLKLRLPLWARRFFGVRLLRLTTAGQPEDYGLPKPDHKLFEAHFIINSTLFYHLGHGDLVAKPDVVELKSDRVAFSDGSEEQIDAIVYATGFQLSFPFLDPSYLQWDKMQPRLYLNIFDQAHPNLFFIGLFQTSTGNWPLMDYQAQLVARYLRARDAAPRKAARIDRLIRRDRSNWNGGIHFSDTQRHVIEVEHFAYRLQLKRLIRALPDSRVAARQGRPVAVATAAPASATPATPSAVRVQAGEA
>NZ_CP013387.1|WP_059597725.1|2709826_2710528_-|ABC-transporter-ATP-binding-protein
MTIVSVDSISKTYLLGSVKVTGLAGVSVDIDANRFTVLSGPSGSGKTTLLNMIGCIDRPDAGRVVVAGQDTATLSDDALSDFRARQVGHVFQSFNLLPVLSAYENVEYPLLMARTPARERASRVAYLLDAVGLNGKGAHRPSQLSGGQRQRVAIARALAAGPSLVLADEPTANLDSVTGQAIIALMHRMQRESGVSFIVSSHDPQVLDAADDVVQIRDGRIVDRRRIAQEAQS
>NZ_CP013387.1|WP_059597726.1|2708399_2709827_-|ABC-transporter-permease
MHTFMLALRNLQRNRRRSITTLLAMIVGVCAVLLFGGFSKDITFGLQTDFVRRSGHLQIQRHGYYQYGSGNPVAYGIGGYERLIAQLRDDPVLATMIAVITPTLQFGGIAGNFEAGVSRTVLAQGAIADEQNRMQQWNDYGFPLAPKPYPLVGTVPDAALVGHGVARVLHLCAPLHVPDCGDGDNLKEAASAASGASAADAPADVIALAAAEADAQKSEGNGERAGATHIEVLAANAYGAPNVGGFTVVKAEQQGVKELDDVYLAMHLPRAQRLVYGGDAPRVTAIEIQLAHTAQLPAARARIDQLFGGRFEGQPLDVLDFAALNPFYDQTNRMFSMIFGFVFVLIGAIVLFVVSNTMSTAILERTVEIGTLRSMGVRRSGIQALFVCEGALLGLVGASIGVLVALGLAFAVNHSGLAWTPPARIDSVALTVRVWGEWRLIALTFVGLAFVAGLSAWLPARHAARLSIVDALRYV
>NZ_CP013387.1|WP_059597743.1|2707560_2708343_-|outer-membrane-lipoprotein-sorting-protein
MRRLFRTWWICLSLGAAVLARAQTPPDPQKLLAESDAIRTPAKSFMLTATLTEYRSGKQVDGNTLSIYSKPDAPGGAFRTLVRFVSPARDKGKLMLKNGNDLWFYDPANQASIRISPDQRLLGQAANGDVVTVNLAHDYQAELKGAEDVMDGDRQTRHCYKLSLTGKAQGLTYHRIEMWLDASNSRPVKAKFYSESDRLLKSAFYRRYTTELGVERPTETVIIDGLDSNWVTVMRFSGYAWRDIPDAWLQRDYLARFQAQ
>NZ_CP013387.1|WP_059597727.1|2706244_2707564_-|hypothetical-protein
MTRRSLAVLICAVAAVAAVASAAMPACAAAAGDADAANDATNAALDLADATPVAAPETARPWKFSVQDAVRWSDDRDAASSWRNQLSIECQFEQALTPTLSVNFAMRFDRFDPLSSGAASHRDVMLVKEAYASWKPSPLLAIDAGRINERIGAAIGYNPTDFFKAGAVSVDVPPDPDSRHTNRLGSVGVRAQRVWDSGSIALMLSPRLASRSEPGDPRASSDLQRTNGVDRWMLVGSQRITPTIQPQWVLYGESGQSPQFGQNLSVLLGNAVVAYAEWTGGWRPSLIGAATGGGNRDRAFRTRSAVGFTWTLPVDLSLTAELQSNSGGASASQWRALQASDPYAWGRAVRTSIAAQELPSRHGLFLMAAWRNVFMRRLDLTGFAQLDLGAGQQYWVELRRRFDKFDVAVQFLRQTGPSWSRFGAMPEASSVQVLGIFYQ
>NZ_CP013387.1|WP_059472296.1|2705807_2706206_-|DUF4345-domain-containing-protein
MSKRILQIATAILAAVPVVTGALGMMGIHDPLYASLGVTLPADATLDSNLRFYAGVWFGLGLGAFYTIPNIERNGVLFRALWTMIFVGGIGRLISLVSLGAPFPPFIGFTVLEIVGAPLFVWWQARVAETAG
>NZ_CP013387.1|WP_059472307.1|2728551_2729115_-|4-carboxymuconolactone-decarboxylase
MTKTKKRLPEFQRETATDEQKAVLDEILSGPRGNLNGPFLGWIASPELAQHAQRLGAFCRYRTGLPLRLSELAILVTSARWRSQAEWHIHHPIALDAGVPAAVAEAIRTGTAPAFDDADDALIFRFATELYETKRVSDATYDASVARFGRQVIVSLVALLGYYALVAMTLNVFEMRADGQTALPFAE
>NZ_CP013387.1|WP_059597721.1|2729157_2730504_-|aspartate-aminotransferase-family-protein
MTTVFHRAPRANLPVAVAGDGIEIIDSTGKRYIDACGGAAVSCLGHNNQRVIDAIKRQAQQLPYAHTSFFTTQPAEALADRLAAAAPAGLEHVYFVSGGSEAIEAALKLARQYFVEKGEPARRHFVARRQSYHGNTLGALAIGGNAWRRAPFLPLLIEAHHVSPCYAYREQRADESEAAFAQRLADELESKILALGPDTVAAFVAETVVGATAGAVPPVREYFRKIRAVCDKYGVLLILDEIMSGMGRTGHLFACEEDGVAPDLLAIAKGLGAGYQPIGATLVSDEIYRTIVGGSGFFQHGHTYIGHATACAAALEVQRVIAEDRLLDNVKARGEQLRALLRERYADHPHVGDVRGRGLFVGVELVRERDTKAPFEPQLKLNAIVKREAMRRGLMVYPMGGTADGDSGDHILLAPPFICTAQQIGAIVERLAGAIEAALASIGAAAVR
>NZ_CP013387.1|WP_059597720.1|2730500_2731571_-|peptidase-C45
MKFLKPVGVAGPPHDIGRQLGELARPVMDAYVAQSSAWRAVARWRGHPFVAELRRAAETAFPALVAELDGLAAGLGWHAEDVFVWNCRGELIHNAPDGCTTLALRTPRDRMIAHNEDGDPHLRGKCALVDVRPDGKPGFVSFYYPGSLPGHTFAVNRAGLVQAINNVRIRRPAAGVPRMILARAVLDALSLGDALRMLCDTPRASGFHHTLGCAGERRVVSVEASVARTSVLDIDGVSGHANHLIHPGGDTEAQIVTASSADRQARLAQLLPPLEGTVDASALWRVLADRAGDGLPIYRDDPNDPDDENTLATALFSIGDDGVAFEVREQGSVRFQQFVPVDAQRPPALRHEEGHA
>NZ_CP013387.1|WP_059472310.1|2731583_2732312_-|glutamine-ABC-transporter-ATP-binding-protein-GlnQ
MSMVEFRNVSKSFGHVPVLKDISLCIDAGEVVVVVGPSGSGKSTMLRCINALEKITGGDLLVDGQSVKGKAAVIHNIRLEAGMVFQQFNLFPQMTTLENVMFGPIQVRGASRAQARDQAMALLDKVGLEARANHYPSELSGGQQQRVAIARALAIKPKLMLFDEPTSALDPELRHEVLKVMRDLANEGMTMIVVTHEIGFAKQVGTRLLFMDQGGIAEDGDPRSLIDHPPTPRLKDFLKHVS
>NZ_CP013387.1|WP_059597742.1|2732308_2732965_-|glutamine-ABC-transporter-permease-GlnP
MQFDWSAIWAALPDLMDGVKLTVFIAFFGLAGGFLVGMVAGMFRAYGPALLNVLAQVYIELIRGTPIVVQVMFLYFALPLLAHIRIDGLTAAIVAITLNSGAYLAEVVRGALLSIPQGLTEAGLAMGLSMPRVLVKIVGPLAFRRLIPPLGNQCIVSLKDTSLFIVIGVGELTRKGQEIIAGNFQAVEIWTAVAVIYLVLTGVMTLTLRFVERRMRIL
>NZ_CP013387.1|WP_059472311.1|2733029_2733782_-|glutamine-ABC-transporter-substrate-binding-protein-GlnH
MGRRSFIKTVVAVALVGASLASAQAKDLVVGTDTSFMPFEFKQGDKYVGFDLDLWAEIAKDAGWTYKIQPMDFAGLIPALQTQNIDVALSGMTIKAERKKAIDFSDPYYDSGLAAMVQTNNTTIKSIDDLNGKVIAAKTGTATIDWIKAHLKPKEIRQFPNVDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGTPVSGDKYGIGFPKGSPLVAKVNAELAKMKADGRYAKIYKKWFGSEPPKS
>NZ_CP013387.1|WP_162499010.1|2734082_2734556_-|hypothetical-protein
MRPHFAQRRGANWFVVRSDRDESFSRRLSLLGSAMWDVSCCSPLPAPRSPLPAPRSQPSAFRPRSQSEAEAEAEAEAEAEAEAEAEAEAEAEAEAEAEAEAEAEAEAEAEAEAEAEAEAEAEAEVSDSQSRSPAIIVACAGRRRCLVPCAPLPMLCG
>NZ_CP013387.1|WP_059472347.1|2734604_2735312_-|phosphorylase
MAGSGHSAAPVIAVAGMAFEARIARGEGVEAVYAARADRLERALAEAADARGCAGVVSFGTAGGLAPDLVPGVLIVADAVDGPFGVLNTDSAWSARIVAALAGTPIAPRMRRGTLAAVGAPVVDAREKESLHRTKGALAVDMESHIAGAFAAARGVPFTVCRAIVDPAWRTLPKAATAGLREDGSTAILPILCELAKQPSQLGALLQVAGDARAARSTLVQARQAFERAGAWRIG
>NZ_CP013387.1|WP_059597224.1|2735318_2737310_-|squalene--hopene-cyclase
MNDMTEMHTLDATAASAAPAVTAGLDAAVARATDALLAAQNADGHWVYELEADSTIPAEYVLLVHYLGEEPNVELEQKIARYLRRIQQPDGGWPLFTDGAPNISASVKAYFALKVIGDDENAEHMQRARRAIHAMGGAETSNVFTRIQLALYGVVPWYAVPMMPVEVMLLPQWFPFHLSKVSYWARTVIVPLLVLNAKRPVAKNPRGVRIDELFKSAPVNTGLLPKQPHQSTGWFAFFRAVDGVLRLVDGLFPRYTRERAIRQAVAFVDERLNSEDGLGAIYPAMANAVMMYAALGYPEDHPNRAIARRSIEKLLVVGEDDAYCQPCLSPVWDTSLAAHALLETGDERARGAAVRGLDWLIPRQILDVRGDWISRRPHVRPGGWAFQYANPHYPDVDDTAVVVMAMDRVAKLDQSDAYREQIARAREWVVGMQSSDGGWGAFEPENTQYYLNNIPFSDHGALLDPPTADVSGRCLSMLAQLGETNASSEPARRAFDYMLKEQEPDGSWYGRWGMNYIYGTWTALCALNAAGLGHDDPRVKRAAQWLLSIQNQDGGWGEDGESYKLDYRGYERAPSVSSQTAWALLGLMAAGEVDNPAVARGIDYLLGAQREHGLWDETRFTATGFPRVFYLRYHGYRKFFPLWALARYRNLKRANTTRVTVGM
>NZ_CP013387.1|WP_059597226.1|2737658_2738507_-|presqualene-diphosphate-synthase-HpnD
MAVSNLVVDDNETDAAAVTSGSSFYLAMRILPAEQRDAMFQVYAFCRAVDDIADEGGPRAERAAQLDRWRADIDECYAGKPRASLVPLAREIGKFGLRREDFHAMIDGMAMDAAEDICAPDEATLDLYCDRVASSAGRLSVRIFGMPDESGRVLSHHLGRALQLTNILRDIDDDAAINRCYLPRELLAREGIAITDPQTIARDPKLPRVCATLVERARRHFAQADATMDASPRAQVRAPRIMSGAYRLILEAAVARGFASPRAPLRKPRARMLLLVARYALF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1335078 : 1369684

Escherichia_phage(33.33%)

transposase,integrase

attL 1334240:1334255|attR 1377498:1377513

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1334240:1334255	attL	NA	NA	NA	NA
WP_108033957.1\|1335078_1336578_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	8.6e-30	32.8
WP_059596311.1\|1336564_1337338_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.0e-34	36.8
WP_059472649.1\|1337334_1337550_+	hypothetical protein	NA	NA	NA	NA
WP_159082955.1\|1339405_1339933_+	hypothetical protein	NA	NA	NA	NA
WP_159082956.1\|1340008_1340662_+	hypothetical protein	NA	NA	NA	NA
WP_159082957.1\|1340855_1341317_+	hypothetical protein	NA	NA	NA	NA
WP_059597213.1\|1341388_1341763_-	HTH domain-containing protein	NA	NA	NA	NA
WP_082722250.1\|1341759_1341993_-	hypothetical protein	NA	NA	NA	NA
WP_059597223.1\|1342067_1343558_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_059597217.1\|1344933_1345926_+	DNA-binding protein	NA	NA	NA	NA
WP_059597218.1\|1346149_1352410_-	hypothetical protein	NA	NA	NA	NA
WP_159082958.1\|1352429_1353017_-	Vps62-related protein	NA	NA	NA	NA
WP_082722247.1\|1354409_1355762_-	hypothetical protein	NA	NA	NA	NA
WP_082722251.1\|1355827_1357183_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.5e-44	36.8
WP_082722248.1\|1357335_1358652_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_059597220.1\|1358652_1358910_-	hypothetical protein	NA	NA	NA	NA
WP_082722249.1\|1362024_1362651_-	hypothetical protein	NA	NA	NA	NA
WP_059597221.1\|1363049_1364750_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_159082959.1\|1365449_1366409_-	hypothetical protein	NA	NA	NA	NA
WP_059598020.1\|1368022_1369684_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
1377498:1377513	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2036784 : 2089127

Burkholderia_virus(59.65%)

integrase,plate,capsid,tail,transposase,tRNA

attL 2021175:2021192|attR 2082048:2082065

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2021175:2021192	attL	NA	NA	NA	NA
WP_059598269.1\|2036784_2037843_+	acyltransferase	A0A166XZF2	Gordonia_phage	2.8e-19	31.2
WP_059598268.1\|2037877_2038921_+	GDP-mannose 4,6-dehydratase	M1HKY0	Acanthocystis_turfacea_Chlorella_virus	8.7e-106	56.2
WP_059472839.1\|2038907_2039891_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_059472838.1\|2039875_2040253_-	cupin domain-containing protein	NA	NA	NA	NA
WP_059598281.1\|2040762_2041137_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	1.8e-61	97.5
WP_059598267.1\|2041133_2041574_-	regulatory protein GemA	Q6QIE7	Burkholderia_phage	1.4e-68	90.4
WP_059598266.1\|2041557_2041899_-	DUF2528 family protein	A4JWM6	Burkholderia_virus	2.9e-50	88.5
WP_059598265.1\|2042006_2042279_-	HU family DNA-binding protein	A4JWM7	Burkholderia_virus	8.2e-40	96.7
WP_059598264.1\|2042342_2042960_-	DUF3164 family protein	A4JWM8	Burkholderia_virus	2.8e-112	99.5
WP_059598263.1\|2043078_2043318_-	hypothetical protein	A1YZW1	Burkholderia_virus	2.4e-11	47.2
WP_059598262.1\|2043311_2043563_-	hypothetical protein	NA	NA	NA	NA
WP_059598261.1\|2043559_2043889_-	hypothetical protein	Q6QIE2	Burkholderia_phage	1.5e-51	92.6
WP_059598280.1\|2043890_2045102_-	AAA family ATPase	A4JWN1	Burkholderia_virus	4.0e-219	97.8
WP_059598260.1\|2045101_2046901_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JWN2	Burkholderia_virus	0.0e+00	98.1
WP_059598259.1\|2046918_2047830_-	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	9.5e-141	87.8
WP_021158474.1\|2047842_2048148_-	helix-turn-helix domain-containing protein	A4JWN4	Burkholderia_virus	1.4e-48	99.0
WP_059598258.1\|2048144_2048624_-	hypothetical protein	Q6QID6	Burkholderia_phage	2.4e-87	98.1
WP_059598257.1\|2048744_2048981_+	hypothetical protein	Q6QID5	Burkholderia_phage	4.5e-34	96.2
WP_059598256.1\|2049026_2049209_-	DNA-binding protein	A4JWN7	Burkholderia_virus	2.0e-26	95.0
WP_059598255.1\|2049334_2049763_+	helix-turn-helix transcriptional regulator	Q6QID2	Burkholderia_phage	2.2e-63	95.1
WP_059598254.1\|2049759_2050530_+	hypothetical protein	A4JWN9	Burkholderia_virus	5.2e-124	89.6
WP_059598253.1\|2050603_2050792_+	hypothetical protein	A4JWP0	Burkholderia_virus	3.1e-22	87.1
WP_059598252.1\|2050772_2051309_+	hypothetical protein	A4JWP1	Burkholderia_virus	3.6e-87	92.7
WP_159082985.1\|2051323_2051704_+	hypothetical protein	J9SVN1	Pseudomonas_phage	2.8e-14	44.4
WP_059598279.1\|2051804_2052029_+	hypothetical protein	A4JWP2	Burkholderia_virus	8.8e-24	78.6
WP_021158467.1\|2052095_2052443_+	phage protein	A4JWP3	Burkholderia_virus	5.2e-47	89.6
WP_059598250.1\|2052445_2053057_+	transglycosylase SLT domain-containing protein	Q6QIC7	Burkholderia_phage	1.5e-110	97.5
WP_059598278.1\|2053053_2053653_+	hypothetical protein	A4JWP5	Burkholderia_virus	1.2e-86	85.4
WP_059598249.1\|2053649_2053988_+	hypothetical protein	A4JWP6	Burkholderia_virus	7.3e-46	87.5
WP_006485389.1\|2053984_2054317_+	hypothetical protein	Q6QIC3	Burkholderia_phage	8.7e-60	100.0
WP_059598248.1\|2054318_2054864_+	DUF3486 family protein	A4JWJ3	Burkholderia_virus	1.5e-88	99.4
WP_059598247.1\|2054860_2056363_+	hypothetical protein	A4JWJ4	Burkholderia_virus	6.5e-288	97.6
WP_059598246.1\|2056359_2057835_+	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	2.1e-278	97.6
WP_059598245.1\|2057827_2058664_+\|capsid	minor capsid protein	A4JWJ6	Burkholderia_virus	8.1e-163	97.5
WP_059598244.1\|2058660_2059188_+	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	8.9e-91	98.3
WP_059598277.1\|2059402_2060521_+	hypothetical protein	A4JWJ9	Burkholderia_virus	3.6e-206	97.0
WP_059598243.1\|2060566_2061490_+	hypothetical protein	A4JWK0	Burkholderia_virus	1.2e-159	92.2
WP_059598242.1\|2061564_2061897_+	DUF2190 family protein	Q6QIB4	Burkholderia_phage	9.7e-51	98.2
WP_059598241.1\|2061898_2062351_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.2e-77	95.3
WP_059598240.1\|2062350_2062815_+	hypothetical protein	A4JWK3	Burkholderia_virus	5.6e-81	97.4
WP_059598239.1\|2062811_2063057_+	hypothetical protein	Q6QIB1	Burkholderia_phage	6.5e-28	77.8
WP_059598238.1\|2063060_2064494_+\|tail	phage tail protein	A4JWK5	Burkholderia_virus	7.9e-259	93.5
WP_059598237.1\|2064496_2065021_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	7.5e-90	94.8
WP_059598276.1\|2065143_2065473_+\|tail	phage tail assembly protein	Q6QIA8	Burkholderia_phage	1.2e-48	97.2
WP_059598236.1\|2065399_2065603_+	hypothetical protein	Q6QIA7	Burkholderia_phage	7.7e-27	89.6
WP_059598235.1\|2065605_2065848_-	hypothetical protein	A4JWK9	Burkholderia_virus	2.1e-31	88.8
WP_059598234.1\|2065877_2068490_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	0.0e+00	90.3
WP_059598233.1\|2068491_2069382_+\|tail	phage tail protein	A4JWL1	Burkholderia_virus	1.2e-98	93.8
WP_059598232.1\|2069381_2069591_+	hypothetical protein	Q6QIA3	Burkholderia_phage	1.4e-31	94.2
WP_059598231.1\|2069578_2070784_+	Cro/Cl family transcriptional regulator	A4JWL3	Burkholderia_virus	8.3e-209	95.0
WP_059598230.1\|2070780_2071383_+\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	2.5e-97	88.5
WP_059598229.1\|2071436_2071790_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	5.4e-60	94.0
WP_059598228.1\|2071786_2072938_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	1.1e-191	90.3
WP_059598227.1\|2072930_2073512_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	6.6e-95	90.2
WP_059598225.1\|2074598_2075054_+\|tail	phage tail protein	NA	NA	NA	NA
WP_082722416.1\|2075191_2075440_+	Com family DNA-binding transcriptional regulator	A0A1S5NPS9	Burkholderia_phage	6.2e-10	65.9
WP_059598224.1\|2075557_2076685_+	hypothetical protein	A4JWM1	Burkholderia_virus	1.4e-194	87.2
WP_059598223.1\|2076675_2077290_+\|tRNA	methionyl-tRNA formyltransferase	A4JWM2	Burkholderia_virus	5.3e-95	81.3
WP_059472936.1\|2077470_2078688_-	O-succinylhomoserine sulfhydrylase	A0A0B5JD48	Pandoravirus	8.8e-17	27.1
WP_059472837.1\|2078918_2080454_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	7.1e-88	42.1
WP_010109891.1\|2080505_2081000_-	CvpA family protein	NA	NA	NA	NA
WP_059472836.1\|2081006_2081819_-	SPOR domain-containing protein	NA	NA	NA	NA
WP_059472935.1\|2081848_2083162_-	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
2082048:2082065	attR	NA	NA	NA	NA
WP_059472835.1\|2083260_2084133_-	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA
WP_059598222.1\|2084216_2085032_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_059472833.1\|2085473_2086322_-	site-specific DNA-methyltransferase	R4THJ7	Phaeocystis_globosa_virus	9.5e-34	34.6
WP_059472832.1\|2086332_2087526_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_059597661.1\|2087595_2088318_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
WP_059472830.1\|2088314_2089127_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013386

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013387

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection