CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014208	Pantoea ananatis strain R100 plasmid, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP014207	Pantoea ananatis strain R100, complete genome	3 crisprs	cas3,DEDDh,DinG,csa3,PD-DExK	2	18	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014207_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014207_1

103383-103474

Orphan

Consensus_repeat	Method
GCAGCAACGTCACGGCGAACGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014207_1

>merge|NZ_CP014207|1|103383-103474|CRISPRCasFinder
GCAGCAACGTCACGGCGAACGGCACCGTAACGGGTCAGGATGTGAACGCACGCGGCAACATGTCTGCCGGCAGCAACATCACGGCGAACGGC

>NZ_CP014207|1|1|103383-103474|CRISPRCasFinder
GCAGCAACGTCACGGCGAACGGC	ACCGTAACGGGTCAGGATGTGAACGCACGCGGCAACATGTCTGCCG
GCAGCAACATCACGGCGAACGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014207.1\|WP_064372681.1\|112300_113062_+\|TIGR03747-family-integrating-conjugative-element-membrane-protein	unknown	unknown	gnl\|CDD\|163459
NZ_CP014207.1\|WP_042678056.1\|94325_94769_+\|type-IV-pilus-biogenesis-protein-PilM	unknown	unknown	gnl\|CDD\|369356
NZ_CP014207.1\|WP_064372656.1\|96455_97745_+\|type-4b-pilus-protein-PilO2	unknown	unknown	gnl\|CDD\|369114
NZ_CP014207.1\|WP_024472205.1\|100919_101504_+\|pilus-assembly-protein-PilX	unknown	unknown	gnl\|CDD\|285957
NZ_CP014207.1\|WP_064372660.1\|98242_99805_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|225363
NZ_CP014207.1\|WP_064372678.1\|109093_109726_+\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|377369
NZ_CP014207.1\|WP_064372653.1\|94779_96453_+\|PilN-family-type-IVB-pilus-formation-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274177
NZ_CP014207.1\|WP_064372665.1\|101990_102677_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014207.1\|WP_064372651.1\|93028_94324_+\|pilus-assembly-protein-PilL	unknown	unknown	gnl\|CDD\|163460
NZ_CP014207.1\|WP_064372662.1\|99794_100910_+\|pilus-assembly-protein-PilR	unknown	unknown	gnl\|CDD\|224376
NZ_CP014207.1\|WP_064372673.1\|107257_107971_+\|TIGR03759-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274770
NZ_CP014207.1\|WP_064372664.1\|101508_101994_+\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381603
NZ_CP014207.1\|WP_064372676.1\|108563_109094_+\|integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|378552
NZ_CP014207.1\|WP_064372671.1\|106556_107246_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184281
NZ_CP014207.1\|WP_042678069.1\|109737_110196_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014207.1\|WP_064372668.1\|104300_105197_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP014207.1\|WP_064372675.1\|107949_108567_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381613
NZ_CP014207.1\|WP_064372658.1\|97731_98235_+\|type-IV-pilus-biogenesis-protein-PilP	unknown	unknown	gnl\|CDD\|274394
NZ_CP014207.1\|WP_064372670.1\|105235_105706_-\|DUF1203-domain-containing-protein	unknown	unknown	gnl\|CDD\|377693
NZ_CP014207.1\|WP_064372679.1\|110199_112314_+\|type-IV-conjugative-transfer-system-coupling-protein-TraD	unknown	unknown	gnl\|CDD\|274767

Protein	Function_ID	Function_description	E-value
NZ_CP014207.1\|WP_064372681.1\|112300_113062_+\|TIGR03747-family-integrating-conjugative-element-membrane-protein	gnl\|CDD\|163459	TIGR03747, conj_TIGR03747, integrating conjugative element membrane protein, PFL_4697 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions].	2.87924e-95
NZ_CP014207.1\|WP_042678056.1\|94325_94769_+\|type-IV-pilus-biogenesis-protein-PilM	gnl\|CDD\|369356	pfam07419, PilM, PilM. This family contains the bacterial protein PilM (approximately 150 residues long). PilM is an inner membrane protein that has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body.	3.30504e-20
NZ_CP014207.1\|WP_064372656.1\|96455_97745_+\|type-4b-pilus-protein-PilO2	gnl\|CDD\|369114	pfam06864, PAP_PilO, Pilin accessory protein (PilO). This family consists of several enterobacterial PilO proteins. The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body. This family does not seem to be related to pfam04350.	4.93295e-55
NZ_CP014207.1\|WP_024472205.1\|100919_101504_+\|pilus-assembly-protein-PilX	gnl\|CDD\|285957	pfam08805, PilS, PilS N terminal. Type IV pili are bacterial virulence-associated adhesins that promote bacterial attachment to host cells. In Salmonella typhi, the structural pilin protein PilS interacts with the cystic fibrosis transmembrane conductance regulator. Mutagenesis studies suggest that residues on an alpha-beta loop and the C terminal disulphide-bonded region of PilS might be involved in binding specificity of the pilus.	3.6942e-15
NZ_CP014207.1\|WP_064372660.1\|98242_99805_+\|pilus-assembly-protein	gnl\|CDD\|225363	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion].	3.0209e-51
NZ_CP014207.1\|WP_064372678.1\|109093_109726_+\|restriction-endonuclease	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	1.25934e-21
NZ_CP014207.1\|WP_064372653.1\|94779_96453_+\|PilN-family-type-IVB-pilus-formation-outer-membrane-protein	gnl\|CDD\|274177	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family. Several related protein families encode outer membrane pore proteins for type II secretion, type III secretion, and type IV pilus formation. This protein family appears to encode a secretin for pilus formation, although it is quite different from PilQ. Members include the PilN lipoprotein of the plasmid R64 thin pilus, a type IV pilus. Scoring between the trusted and noise cutoffs are examples of bundle-forming pilus B (bfpB). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	6.1815e-100
NZ_CP014207.1\|WP_064372651.1\|93028_94324_+\|pilus-assembly-protein-PilL	gnl\|CDD\|163460	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family. This model describes the conserved N-terminal region of a variable length protein family associated with laterally transfered regions flanked by markers of conjugative plasmid integration and/or transposition. Most members of the family have the lipoprotein signal peptide motif. A member of the family from a pathogenicity island in Salmonella enterica serovar Dublin strain was designated PilL for nomenclature consistency with a neighboring gene for the pilin structural protein PilS. However, the species distribution of this protein family tracks much better with markers of conjugal transfer than with markers of PilS-like pilin structure. [Mobile and extrachromosomal element functions, Plasmid functions].	6.10008e-56
NZ_CP014207.1\|WP_064372662.1\|99794_100910_+\|pilus-assembly-protein-PilR	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	7.55864e-21
NZ_CP014207.1\|WP_064372673.1\|107257_107971_+\|TIGR03759-family-integrating-conjugative-element-protein	gnl\|CDD\|274770	TIGR03759, conj_TIGR03759, integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown. [Mobile and extrachromosomal element functions, Plasmid functions].	4.2887e-97
NZ_CP014207.1\|WP_064372664.1\|101508_101994_+\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381603	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins. Lytic transglycosylase-like protein, similar to Escherichia coli invasion protein IagB. IagB is encoded within a pathogenicity island in Salmonella enterica and has been shown to degrade polymeric peptidoglycan. IagB-like invasion proteins are implicated in the invasion of eukaryotic host cells by bacteria. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Members of this family resemble the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	1.39665e-41
NZ_CP014207.1\|WP_064372676.1\|108563_109094_+\|integrating-conjugative-element-protein	gnl\|CDD\|378552	pfam11072, DUF2859, Protein of unknown function (DUF2859). This is a bacterial family of uncharacterized proteins.	4.18029e-56
NZ_CP014207.1\|WP_064372671.1\|106556_107246_+\|hypothetical-protein	gnl\|CDD\|184281	PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional.	0.00154261
NZ_CP014207.1\|WP_064372668.1\|104300_105197_-\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.3516e-15
NZ_CP014207.1\|WP_064372675.1\|107949_108567_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381613	cd16892, LT_VirB1-like, VirB1-like subfamily. This subfamily includes VirB1 protein, one of twelve proteins making up type IV secretion systems (T4SS). T4SS are macromolecular assemblies generally composed of VirB1-11 and VirD4 proteins, and are used by bacteria to transport material across their membranes. VirB1 acts as a lytic transglycosylase (LT), and is important with respect to piercing the peptidoglycan layer in the periplasm. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	1.22958e-09
NZ_CP014207.1\|WP_064372658.1\|97731_98235_+\|type-IV-pilus-biogenesis-protein-PilP	gnl\|CDD\|274394	TIGR03021, pilP_fam, type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP. [Cell envelope, Surface structures].	6.04648e-22
NZ_CP014207.1\|WP_064372670.1\|105235_105706_-\|DUF1203-domain-containing-protein	gnl\|CDD\|377693	pfam06718, DUF1203, Protein of unknown function (DUF1203). This family consists of several hypothetical bacterial proteins of around 155 residues in length. Family members are present in Rhizobium, Agrobacterium and Streptomyces species.	1.47957e-38
NZ_CP014207.1\|WP_064372679.1\|110199_112314_+\|type-IV-conjugative-transfer-system-coupling-protein-TraD	gnl\|CDD\|274767	TIGR03754, conj_TOL_TraD, conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.	0

>NZ_CP014207.1|WP_064372665.1|101990_102677_+|hypothetical-protein
MTLLTLSMPWQFTAALFPVFLSLLSLMAKHVRKSIGLYYLPLNRGENEVTAAAVCWLFAAAATAVMLSPLSQRLPAFFFILFLFRLTLTDALAGLLPRHMTVSCLLAGLAASLWKPVSEGSGAALSVLAVHAAACLVVLVIVGALRQFSIMRDGRENPALGDVWLAGAVTGWLGFSDGCWAIGTGVVMFTLWQAPKRHTGEGGPLGPWLSAGAVTVTLIQLYQPIVVW
>NZ_CP014207.1|WP_064372664.1|101508_101994_+|lytic-transglycosylase-domain-containing-protein
MSRPVLIVMMFMTLFCARAQAFCFDAAGAKYHIDPLLIKAIATGESSLRPGVTNINHDPKTGRAVSTDYGLMQVNSSHIPSLIAKGFISSPQDLLTKPCLNVQIGTWILATHFQVCGISWNCLGSYNAGFRKDRHETRESYANRVYAIYKKLLLKERGIKL
>NZ_CP014207.1|WP_024472205.1|100919_101504_+|pilus-assembly-protein-PilX
MSVSNNTVKIHPDRGWGFSEQGYIALGYLLVITIVVIAGWKLLHKKDTAVEVTSLQTMLSNGVALKGRNGYDYSSGASMTGTLIKRDLAPSGYTVHGTPSSGTATLTNSYGGQVVIAPVAVNGYNNAFSVTTQSLPQSACIDVASGMNSSGTSNTLTINSTDFSDGASSETIAQACTADSGRTGNNTIVVTHNG
>NZ_CP014207.1|WP_064372662.1|99794_100910_+|pilus-assembly-protein-PilR
MSRNLRFRTERGMSLFERCRYHAVRLTFTGAHRQVFYENMRFLLENRKPLDISLKMIGDVHTSFGEKWHPYRELIEDCLEGLSDNTPGRSLSDVLAIWVPYEEAALITAGIRTGRIPVSLLQADKLIRARQRILNQVVFASVYPLVLVVLGGGLLGVNNLALVPMLSNISDPAGWTGALGFMKDLSDWTAQWGPAAAFSAAALFVASLLSLPRWRGSLRRVADNFLPWSLYKDLQGAVFLMNTGALLGAGVPELEALELLNGFAPPWLQERIEAAMDAMSEGHSLGMALRESGYDFPSREAVNYLSLLDDGKGSAEMISNYADRWLEQTLKRVARRANTTKFFSMLMILGFFALIILMVMQLQDTGSFNLR
>NZ_CP014207.1|WP_064372660.1|98242_99805_+|pilus-assembly-protein
MKPAKEIADFVFAEQHPTQGVTLLIDKNRRQDPSIQRWAMDMAKQHPGAKTEFVTLSELSQRRESAVAQGLVVTENDLDKKDVSRSQDKVLSYFSLAYELHSSDIHFEISADRKLTIIRMRIHGELEVIDELTDEEGITLVSTVYISMCDVREQSFYMGREQSGRVDAKFARQAGLYGARYEHRATPDGLFVVMRMIPDDSKNMPTLPQLGFLPGQIGIVMQMLRLPSGMVLLTGPTGSGKSASMRSFCDLWMKLTGGKKLLLTLENPTEGLMPGAIQTQVMPDDNSPEAISRAWNNGNASSLRLDPDALGTGEMRDLYSILAAIYACETGHLFFSTLHTKTPIGALRRMELFGIDRRLLADPSLIVGLIGQRLVPLLCENCKISWSDKMPELNMETRERLKKYCNVEGVCTPQQLFFRNPEGCECCRKVVPFNGRIVSKGVTGRAAVAEVMRTDARMMKIWLSDGPDAARLDWIKRGGISRLMHLMRYLAEGRVDPLEADLICPLDEDEHLHSEVSHVA
>NZ_CP014207.1|WP_064372658.1|97731_98235_+|type-IV-pilus-biogenesis-protein-PilP
MRRNSPAVICLLLSWTLMHHAQAADSGSLPPNVTLGELESAQAQNLLLEQRVQTARLQQQLRESQTPVASAPALSAVVPPLSSYPQAGQMPSSSSQVKESSSANTKSAGIRLVEIYGKPGQLRARLLLPSGGIAEVVKGDQIPGTAKRVTAVTETLVRLSDDTELSF
>NZ_CP014207.1|WP_064372656.1|96455_97745_+|type-4b-pilus-protein-PilO2
MKIKKKVSIHLSSGVTVRDRKNRREWVAGMEWEEAQSGIQWLRLGSRAADTHYRIQGARPHALVGNVSPGRTRSGLYSLALAFQLKESGNAWGIYRLSREHDSWVFLAINNGHLSVMGDFTGTRADAESAARNFLHFNENESGEFRCVAAADEDTDVLSVTSGFTGAQLKRCRLRRRLSPAEVALPSLLLIVLLYAGWYAKDTLSERARQAADEATFRARMAMTPAKPVLPASAPHPWAHQLPVPVMLSFCWLTREPLYASVAGWRVSDAECIPKGIRLRYTAMPGATVSDFARRVKELFGLDAVFNLQEGGKNGDVFIPARVSPAQFEDEKLPGTDVLLMRFISHLQRRNIDVKFDEVKPPVLAPGQEMKTAPQDWREFTFIINSRLQPELLFQGLDATGIRLTSVAISMNEQAKFNYTIKGSVYAQK
>NZ_CP014207.1|WP_064372653.1|94779_96453_+|PilN-family-type-IVB-pilus-formation-outer-membrane-protein
MSRTPLKMTLLAMAVLLSACSVRDVATIEKDNNTQGDTAQRILQSRLDMSQPAVVWADKPWVNLKPIQSAIAAPDDVRMPPCPVYFNSPEGLTLPQIASRINALCGFRVYISPEVSAALLQSAGGSVVTSQMSGRLPAPDDNGRVPLSQMGMPAQPAVMSTSEPVLFQGTRFQGDAQEALNIAASTLGLSVRRTTGRVDFFIQDTRTFQLAILNTKVDSSASITSGAGAQLGNQSGTGGTKGDVSSNQKTNYGMNSDLYNDIRKTVEQILTPKSGRYWLSDATGTLSVTDTPDVLDRVGRYIDYQNQVLHRQVQLTLQIVRFTQTKNVDRGLDWGLVAKTVSGLGASIGSTFTGAPANAGSFGLSILNSATGGAEKFSGSQLMIRALEQQGTVTMALNQTDPTANLTPVAYQLSNNTGMLNSSSSTAVANVGVTSSQSVSSITTGLFITMLPFVQANGDIQLQFAYSYTTPPDIKSFISKDGNTRNDVANTATEGLARKVNLRAGQTLVLTGSVQQNASSDKQGTFSPENYLLGGGQSGAKSRSTLIIMITPVLLGQ
>NZ_CP014207.1|WP_042678056.1|94325_94769_+|type-IV-pilus-biogenesis-protein-PilM
MGFALPIIALAMFFGLMASDAQRRNSDIVTQSVTVAAPVRLATDMLRTADAVNDWRHGRSVGDGPVSPAATGMMPPPDSRVQSVIQNGRLWVWVADTPGVYAALRNQSTTSALALTVSGGRLRMYDGTDMNLSLPSGVTEGSIVYLN
>NZ_CP014207.1|WP_064372651.1|93028_94324_+|pilus-assembly-protein-PilL
MAVPSGQAAKRAGIIACTVMLAGCVNTAATDTASVYSRSHTPARFDDIYRNRSPEVVRYDRYTLVSTRPADAQLDPLNQVVDITMPAQLVSTVGEGFRYLLLESGYSLCSATSAAFSELLSRPLPAVQRTIGPLKLSEALQVVAGPAWRLKVDEVNREVCFELRDQYRSFSAPAVSLPAIRPAVSAPVSKSYTPPVMQTKAVSVPTPASGLARNPFTGDVVTPSGLKPQSLSVPSPVLQQSQSSVTSGNLQASSQKPAPLASAGTSAAAHTTAKQNKAVITPTAVKTQTAPLTTVNATPKASSVVHQQPSTAVTPAPAADSRIVPTYSTGTPVTSPVTGQTWRAEPGTTLKEALTAWTAKAPCANGGNWVLIWPVALDYRIDAPLVFHGNFESVLVQVFDLYRHAEKPLFAEANRIQCLVSVSDTPTPGGR
>NZ_CP014207.1|WP_064372668.1|104300_105197_-|EamA-family-transporter
MKVSDVVRLILLAALWGASFLFMRIAVPAFGSVNVAFLRVLLGFTGLAAVVLLNSQLRTFGGKLGPTLALGIINSGLPFLLYCIAARWLPTGYSAIFNATAPMMGAIVGLSFFGEIITTRKIIGMITGLAGIVIISSPTYSDLGGMFIAGALACLMATTCYGFAGYLTRRWITDRGGLDPRMVALGSQAGASIFLLPFFGWSMFSENTVNWLQPHVWGCVAALGFICTALAYILYFRLIADIGPLKSLTVTFVIPPFACLWGYLVLDERIGAQFISGACLIGIAVWMMCYSGRKMQTS
>NZ_CP014207.1|WP_064372670.1|105235_105706_-|DUF1203-domain-containing-protein
MGFRISGLNPEPFTHLFGKGEHYLKQHRALRISVDSYPGYPDRISLRDIPAGETVILINHTYQPADTPYLGSHAVYLWEGCNEQGIYINKIPESIGLRILSLRAFDENHLMLQADICEGAAAEMMLKHFFDDPSVSYIHIHNAKQGCYACLAERVL
>NZ_CP014207.1|WP_064372671.1|106556_107246_+|hypothetical-protein
MVIALLGTLTASAVLLVRVSNLTIRVNTLDAAFRSGEIGQLSSNVTIMQEKLKTLEKQVSALAPVQDKVTSMSTEQLKLSTRVNQLSDASLSDQQSVEQLQQQLGQLRQEVQTSASAVEALKQQAVATPKAPEPEKAKPQPSQKAVSSPKKAKRSVRHAVMPAAPFELTGIERRGGQTFAVVIPRGVTVISSMRLLSPGDGFMGWTLRALEGNAALFSVNGSAVRLQVQ
>NZ_CP014207.1|WP_064372673.1|107257_107971_+|TIGR03759-family-integrating-conjugative-element-protein
MKKTLTATLILLPFWALASTAQTPAVNSRVAPIQENTTSSLSTQQQAQQWGLSDSDWSRYQTLMKGERGIMSPGLDPLTALGVETDNSAERRRLAELWVKHEYQRTEKELAFQRDVNAAWLRLYPETLAVNMGANAAGIAHDTQGRLALFLKENCSRCDARLAAVLADNRPVDLYLVGIESDDGLRAWAVKHNIPVEKVRSRQITLNHDNGLWFKYGMGQMPVILQQGGTGWQVAAY
>NZ_CP014207.1|WP_064372675.1|107949_108567_+|transglycosylase-SLT-domain-containing-protein
MAGCGVLKNAAVLVCLVSCACSANDRRQVIPDAYRQIAAAERVPAESLYSLAMAESTRKTSWGAKPWPWTINVAGRGYHYETREAAYTALLEFMQRWPLKNIDVGVAQVNLGWNGHFFPTYRDAFDPYLNLRAAARILRACYEARPGSWLNAAGCYHHPAGGKAARTYIAIVRRKLGQIATDTPGAPPATPVELASNTLTWIEPK
>NZ_CP014207.1|WP_064372676.1|108563_109094_+|integrating-conjugative-element-protein
MMKRNCLVRNTLFSACLLSVVTGASAALVVVGDLGGEPTAPYFDAINADKDAVAGAPAVPAAPPESLSISDMLPVSTPEMSPGPVSPQPLELSGMPPVFVLGDDSLSKQWLSQHAAALSQMHATGMVVSVKDAAALSALRALAPSTEMVPVSGGDLARRLHLAHYPVLITDKGLSQ
>NZ_CP014207.1|WP_064372678.1|109093_109726_+|restriction-endonuclease
MPVYVIAELIKANPVQVALVVALALVLVCLLSPYCLRSASDRRHRRYQKRAASALIRLTELRDDAARMVWLRKVNPYVFEEMLLTALSRQGFRIKRNARYSGDGGLDGQVWIAGQRWLIQAKRYGATINAQHVAAFGLLAVQEQSRGLFIHTGRTGLSSHDAFRRCPLVILISGQRLLQLLAGDRRWLDFHDNVHHLELQSGFRAPSSRH
>NZ_CP014207.1|WP_042678069.1|109737_110196_+|hypothetical-protein
MRIFFRTVPVAAINVLQSLNAGRAFKSLLLLLLSLLNYVFLLFMYLLKPVFLWPLMFLSAVLTILTMAVPVLLFASPVFTLSSACSGLLKVIHQFPEMWPVLILLSLQIDMLLFLRREYNREFTRMRDRLLKREIVHAGSGRGGDVTDKQRG
>NZ_CP014207.1|WP_064372679.1|110199_112314_+|type-IV-conjugative-transfer-system-coupling-protein-TraD
MSDRYVMESLLRPAVEMYSATVAGSATFICLTAPWSVALAPSVSWVTAAGFGVLALKRTSQGLKILRYRRNIRRLPRYALTSDQIPVSRRHLFLGKGFQWSPRHTQRLMEARRPECEIYVQPSVMYRLARELEKKMEYSLPWLCRMTSADSALNPFRPLPPVGGSSVYHGVEPDEVNVMSDLGERVGHMLVMGTTRVGKTRLAELLITQDIRQRNAAGEFEVVIVFDPKGDADLLRRMYAESHRAGRQDNFWVFHLGWPDISARYNAVGRFSRISEVASRVAGQLSSEGNAAAFREFAWRFVNIITRALVALGQRPDYNLILRYVTNIGELYETYVDNLLSGKAPALMGSLEALMQAGIKEKDLPRHLQGRPNGIKIWASEQVLASPQGKTLWDPVLDGLRSAVQYDRTYFDKIVASLLPLLEKLTTGKTAALLAPDYNDLSDPRPILDWHNIIKSRGVVYVGLDALSDPVVAAAVGNSMFADLVSEGGHIYKFGLGDEGDKKAGKAVINLHCDEFNELMGDEFIPLINKGGGAGFQVTAYTQTLSDIEARIGNAAKASQVIGNFNSLVMLRVREKNTAMLMTDQLPEVGVYQKTLTSGVTDVSRPGEGTDFNSNVNDQVTLVKVPMISPSDIINLPKGQAFALLEGGRLWKIRMPLPVSDDNDRFMPASLKQLADTMEKNYHSGESWWTGGDAGIPGGLHVPE
>NZ_CP014207.1|WP_064372681.1|112300_113062_+|TIGR03747-family-integrating-conjugative-element-membrane-protein
MSQNDGGNARQSAPAKHRHPGPFTLLLWDLPLSIIGILIGSLFVSLGVEYACMTFLWPDEGATHSYQVMLAESHWLSSGYTRSLLMATPVETITRWVQAAWHWLFVDSGFSHWLASFRETSRKGSGLIPSLNGFGASLISRLGEYLQATLWVTLIFFIRVMILFLSIPLFGLVIITGIVEGLVRRDLRRYGAGYESSFVYHHAKRFVKPALYGPCMLYLAWPTAVWPNLFLLPSALLVGGVLAVVTASFKKYL

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Crispr_ID: NZ_CP014207_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014207_2

1580863-1582133

Orphan

Consensus_repeat	Method
GCCGGTTACGGCAGTACCCAGAC	CRISPRCasFinder

26 spacers

The CRISPR arrays of NZ_CP014207_2

>merge|NZ_CP014207|2|1580863-1582133|CRISPRCasFinder
GCCGGATATGGCAGTACTGAGACGGCGGGTGATAGCAGCACATTAATTGCCGGTTATGGTAGCACCGGTACAGCGGGATCAGACAGCACATTAGTCGCGGGCTACGGCAGTACCCAAACCGCAGGTGAAGAGAGCAGCCAGATGGCGGGTTACGGCAGCACGCAGACCGGCATGAAAGGCAGCGATCTCACCGCCGGTTACGGCAGTACCGGCACGGCGGGCGCCGACAGCTCCCTGATCGCCGGTTACGGCAGTACCCAGACGGCGGGCGAAGACAGCTCGCTGACAGCCGGTTACGGCAGTACCCAGACCGCGCAGAAGGGCAGCGATCTTACGGCCGGTTATGGCAGTACCGGCACGGCGGGTGCCGACAGTTCATTAATCGCGGGCTACGGCAGCACCCAGACGGCCGGGGAAGAAAGCACCCAGACAGCCGGTTATGGCAGCACCCAGACCGCGCAGAAGGGCAGCGACCTTACGGCCGGTTACGGCAGTACCGGTACGGCCGGTGACGACAGCTCCCTGATCGCCGGTTACGGCAGTACCCAGACGGCGGGCGAAGACAGCTCGCTGACAGCCGGTTACGGCAGTACCCAGACCGCGCAGAAGGGCAGCGATCTTACTGCAGGTTATGGCAGTACCGGCACGGCGGGTGCCGACAGTTCATTAATTGCGGGCTACGGCAGCACCCAGACGGCCGGGGAAGAGAGCACCCAGACAGCCGGTTATGGCAGCACCCAGACCGCGCAGAAGGGCAGCGACCTTACGGCCGGTTACGGCAGTACCGGTACGGCGGGTGACGACAGCTCCCTGATCGCCGGTTACGGTAGTACCCAGACGGCGGGCGAAGACAGCTCGCTGACAGCCGGTTACGGCAGTACCCAGACCGCGCAGAAGGGCAGCGATCTTACTGCAGGTTATGGCAGTACCTCTACGGCAGGCTATGAAAGTTCATTGATCTCGGGCTATGGCAGTACCCAGACAGCGGGTTACGGTAGCACGCTGACAGCGGGTTACGGCAGTACGCAGACCGCGCAGAACGAAAGCGATCTCATCACCGGCTATGGCAGTACGTCTACAGCCGGGGCAAATAGTTCACTGATCGCAGGCTATGGCAGCACGCAGACAGCCAGCTACAACAGTGTGCTAACGGCGGGCTACGGCAGTACCCAGACGGCGAGAGAAGGCAGTGACCTCACTGCCGGGTACGGCAGCACCGGCACGGCAGGCTCGGACAGCTCAATCATTGCAGGTTACGGCAGCACCCAGAC

>NZ_CP014207|2|2|1580863-1582133|CRISPRCasFinder
GCCGGATATGGCAGTACTGAGAC	GGCGGGTGATAGCAGCACATTAATT
GCCGGTTATGGTAGCACCGGTAC	AGCGGGATCAGACAGCACATTAGTC
GCGGGCTACGGCAGTACCCAAAC	CGCAGGTGAAGAGAGCAGCCAGATG
GCGGGTTACGGCAGCACGCAGAC	CGGCATGAAAGGCAGCGATCTCACC
GCCGGTTACGGCAGTACCGGCAC	GGCGGGCGCCGACAGCTCCCTGATC
GCCGGTTACGGCAGTACCCAGAC	GGCGGGCGAAGACAGCTCGCTGACA
GCCGGTTACGGCAGTACCCAGAC	CGCGCAGAAGGGCAGCGATCTTACG
GCCGGTTATGGCAGTACCGGCAC	GGCGGGTGCCGACAGTTCATTAATC
GCGGGCTACGGCAGCACCCAGAC	GGCCGGGGAAGAAAGCACCCAGACA
GCCGGTTATGGCAGCACCCAGAC	CGCGCAGAAGGGCAGCGACCTTACG
GCCGGTTACGGCAGTACCGGTAC	GGCCGGTGACGACAGCTCCCTGATC
GCCGGTTACGGCAGTACCCAGAC	GGCGGGCGAAGACAGCTCGCTGACA
GCCGGTTACGGCAGTACCCAGAC	CGCGCAGAAGGGCAGCGATCTTACT
GCAGGTTATGGCAGTACCGGCAC	GGCGGGTGCCGACAGTTCATTAATT
GCGGGCTACGGCAGCACCCAGAC	GGCCGGGGAAGAGAGCACCCAGACA
GCCGGTTATGGCAGCACCCAGAC	CGCGCAGAAGGGCAGCGACCTTACG
GCCGGTTACGGCAGTACCGGTAC	GGCGGGTGACGACAGCTCCCTGATC
GCCGGTTACGGTAGTACCCAGAC	GGCGGGCGAAGACAGCTCGCTGACA
GCCGGTTACGGCAGTACCCAGAC	CGCGCAGAAGGGCAGCGATCTTACT
GCAGGTTATGGCAGTACCTCTAC	GGCAGGCTATGAAAGTTCATTGATC
TCGGGCTATGGCAGTACCCAGAC	AGCGGGTTACGGTAGCACGCTGACA
GCGGGTTACGGCAGTACGCAGAC	CGCGCAGAACGAAAGCGATCTCATC
ACCGGCTATGGCAGTACGTCTAC	AGCCGGGGCAAATAGTTCACTGATC
GCAGGCTATGGCAGCACGCAGAC	AGCCAGCTACAACAGTGTGCTAACG
GCGGGCTACGGCAGTACCCAGAC	GGCGAGAGAAGGCAGTGACCTCACT
GCCGGGTACGGCAGCACCGGCAC	GGCAGGCTCGGACAGCTCAATCATT
GCAGGTTACGGCAGCACCCAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014207.1\|WP_013024487.1\|1585915_1587169_-\|D-galactonate-dehydratase-family-member-RspA	unknown	unknown	gnl\|CDD\|239438
NZ_CP014207.1\|WP_014595264.1\|1589476_1590874_+\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP014207.1\|WP_064373177.1\|1588302_1589334_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|182130
NZ_CP014207.1\|WP_064373166.1\|1568704_1569784_-\|glycosyl-hydrolase-family-88	unknown	unknown	gnl\|CDD\|226678
NZ_CP014207.1\|WP_014606656.1\|1595025_1595736_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP014207.1\|WP_064373173.1\|1573791_1574388_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274396
NZ_CP014207.1\|WP_014595258.1\|1576788_1578525_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|227319
NZ_CP014207.1\|WP_013024496.1\|1595758_1596205_-\|DUF1640-domain-containing-protein	unknown	unknown	gnl\|CDD\|369525
NZ_CP014207.1\|WP_013024491.1\|1590973_1591684_+\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_CP014207.1\|WP_014595268.1\|1594375_1594882_+\|RcnB-family-protein	unknown	unknown	gnl\|CDD\|378715
NZ_CP014207.1\|WP_024472366.1\|1593101_1594244_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP014207.1\|WP_064373175.1\|1574393_1575362_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014207.1\|WP_024472321.1\|1572310_1572901_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014207.1\|WP_014606658.1\|1591959_1592628_-\|YecA-family-protein	unknown	unknown	gnl\|CDD\|236680
NZ_CP014207.1\|WP_014595259.1\|1578535_1579873_+\|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NZ_CP014207.1\|WP_064373170.1\|1573034_1573688_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014207.1\|WP_013024477.1\|1571032_1571869_-\|5-dehydro-4-deoxy-D-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|179169
NZ_CP014207.1\|WP_064373168.1\|1570215_1570977_-\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	unknown	unknown	gnl\|CDD\|181605
NZ_CP014207.1\|WP_019105056.1\|1575692_1575830_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014207.1\|WP_014595262.1\|1587493_1588261_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605

Protein	Function_ID	Function_description	E-value
NZ_CP014207.1\|WP_013024487.1\|1585915_1587169_-\|D-galactonate-dehydratase-family-member-RspA	gnl\|CDD\|239438	cd03322, RspA, The starvation sensing protein RspA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.	1.34263e-173
NZ_CP014207.1\|WP_014595264.1\|1589476_1590874_+\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.01622e-144
NZ_CP014207.1\|WP_064373177.1\|1588302_1589334_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
NZ_CP014207.1\|WP_064373166.1\|1568704_1569784_-\|glycosyl-hydrolase-family-88	gnl\|CDD\|226678	COG4225, COG4225, Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only].	1.89383e-96
NZ_CP014207.1\|WP_014606656.1\|1595025_1595736_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.57583e-26
NZ_CP014207.1\|WP_064373173.1\|1573791_1574388_-\|hypothetical-protein	gnl\|CDD\|274396	TIGR03023, Sugar_transferase., Undecaprenyl-phosphate glucose phosphotransferase. This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis, the Methylobacillus EpsB protein involved in methanolan biosynthesis, as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein, which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase, and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.	0.00279024
NZ_CP014207.1\|WP_014595258.1\|1576788_1578525_+\|ABC-transporter-permease-subunit	gnl\|CDD\|227319	COG4986, COG4986, ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism].	5.75074e-178
NZ_CP014207.1\|WP_013024496.1\|1595758_1596205_-\|DUF1640-domain-containing-protein	gnl\|CDD\|369525	pfam07798, DUF1640, Protein of unknown function (DUF1640). This family consists of sequences derived from hypothetical eukaryotic proteins. A region approximately 100 residues in length is featured.	3.82631e-07
NZ_CP014207.1\|WP_013024491.1\|1590973_1591684_+\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	5.11816e-52
NZ_CP014207.1\|WP_014595268.1\|1594375_1594882_+\|RcnB-family-protein	gnl\|CDD\|378715	pfam11776, RcnB, Nickel/cobalt transporter regulator. RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.	9.97795e-17
NZ_CP014207.1\|WP_024472366.1\|1593101_1594244_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	2.72074e-45
NZ_CP014207.1\|WP_014606658.1\|1591959_1592628_-\|YecA-family-protein	gnl\|CDD\|236680	PRK10396, PRK10396, hypothetical protein; Provisional.	2.83561e-146
NZ_CP014207.1\|WP_014595259.1\|1578535_1579873_+\|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.10133e-115
NZ_CP014207.1\|WP_013024477.1\|1571032_1571869_-\|5-dehydro-4-deoxy-D-glucuronate-isomerase	gnl\|CDD\|179169	PRK00924, PRK00924, 5-keto-4-deoxyuronate isomerase; Provisional.	0
NZ_CP014207.1\|WP_064373168.1\|1570215_1570977_-\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	gnl\|CDD\|181605	PRK08993, PRK08993, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD.	1.32856e-167
NZ_CP014207.1\|WP_014595262.1\|1587493_1588261_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.4571e-101

>NZ_CP014207.1|WP_014595259.1|1578535_1579873_+|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein
MLNNPPTLNPDVSNRKPEGRKAVLTVKDIKHGYDKTHGEVLILDDVNLTLQEGEIVGLLGRSGSGKSTLLRIISGLITPGSGAVEYLGKPLNGPAKGVAMVFQTFALFPWLTVLQNVEAGLEALGVEKAERRKRALAAIDLIGLDGFENAYPRELSGGMRQRVGFARALVVDPTLLLMDEPFSALDVLTAETLRTDLLDLWNEGQMPMKSVLIVTHNIEEAVFMCDRILVLSSNPGRVVAEIKVPFGHPRNRLDPAFRRLVDDVYTQMTARPTSDNVKKSLRLGTHLPQVSTNLMAGLIETLAAAPYHGRADMPDVARSLHLEVDELFPIAEVLQSLGFADVREGDIFLTPPARVFAESDTQQRKVMFADHLLRYVPLAALIKTVLDERPGHRAPRMRFEQELEDSLADSAAKETLDSVINWGRYAEIFSYNDQTEYFSLEDVEF
>NZ_CP014207.1|WP_014595258.1|1576788_1578525_+|ABC-transporter-permease-subunit
MNFRFTMLAANRRLLPNVWDAVAFPLIICLIAMVAVGFHQTLMPIDSLKTQAISLDPTNLPEYAMRTTLRMLVAMLASLVFSLIYGTLAAKSRRAEKVLVPILDILQSVPVLGYISFTVTFFIALFPGQVLGVELAAIFALFTSQAWNMTFSFYQSLRTVPADLVEVSRGFHLTGWQRFWKLDAPFAVPGLVWNMMMSMSGGWFFIVASEAITVGNNTFTLPGVGGYLAQAILHKDIHAVGWVLLTMVIVILAYDQLLFRPLVAWADKFRMENTRSGNAPTSWVRDLMRRTRLIHQIFTPLRLLLSALARISWRWPTAAPVRFENNTRRASRLGDIVWGAFVILLTLYVVYRVITYVQIGVTLDEVKHVFTLGLITLLRVTVLILISSLIWVPLGVMIGLRPALAGKIQPVAQFLAAFPANLMFPVFVIMIVHFHLNPDIWLSPLIVLGTQWYILFNVVAGTTAFPNDYKEAAANFHIRGWQWWRQVMLPGIFPYYITGAITASGGAWNASIVSEFVQWGNTQVTAHGLGAYIAQTTAAGDFPKIILGIAVMSLFVTLFNRLLWRPLYVYAESKFRAN
>NZ_CP014207.1|WP_019105056.1|1575692_1575830_-|hypothetical-protein
MASLDDIVLQPLSASREKATSTLFFMILFIPNIVKGEVKKTQAFD
>NZ_CP014207.1|WP_064373175.1|1574393_1575362_-|hypothetical-protein
MALPGQSSNNLPDYNIARRLGMVSADDIDFTALANRLDCTRDFSQVGIIYSDGRGQWLVRPSRRYASSNQSNVSHVVITKVPTLTSQTAAKSITDTLSKPSLANEITSTAFSCGAAVATAFLAIAAGSTVPLTAGATGVVAGIIAAGTFATVGQCINGGARLLLISAGHEESVNWIDSQGWYTATCTALDLISLAGAGAGLKGIFDTYKLMRGASSARAIEWLKTLSRAERKRITQEIIRIQNPGISNSGIKAIMHMGGYPKRFPTEALQKSLQKELANAIINTSAFAGSALTGTIRNPQTVSQSGKYIIGLLQSFNATGIN
>NZ_CP014207.1|WP_064373173.1|1573791_1574388_-|hypothetical-protein
MLKKLKKTLTLSKSYSKKIDTFDIAKLEKVKDEMIDEMEEPVGWHTMGLPLVASCFLAIFSFVIPQTSLWQGIYTLMGWPKYALMIGIMVAAFFYAFLVVLSLLFISKGSYVFLRFHLLVLAITTLFSLFFVCYCFFSWLTGSGVHALLFGLSFPGLFAACLSWKCLDTDMFYRMIAYCLHNRAWRKQIEGQRKNHAS
>NZ_CP014207.1|WP_064373170.1|1573034_1573688_-|hypothetical-protein
MDEISTKFFNKNAHGRLIIMFKHLKNALALSEKFSAKIVKGNDEQLESVKDEMMNEMDTPIGWHTMGIPLIISAILTVVSFSLPQISIWHGISKWMDWSKNAFFIGAMITDLVGCIIIIPLMAVVGKGQYLALKSYVYIAFSTATLAISFLIYTILGTLLGADIKTTHLIVSIIGVILIILSFMCINSLVFYRMIAYCLHNRAWRKQIEMQREKPHL
>NZ_CP014207.1|WP_024472321.1|1572310_1572901_-|hypothetical-protein
MFYNLKSSLELSKKVTAQISKANDEQLESIKDEMTDKMEVPIGWHIMGIPLSSSLICSLFSCAMSLMPLGIKMIDNFNWPKYPTLTGVFITSIIYCLFVYISAFSIVRGFYHAIKIYLAIYVFTTTLASLNFIFDIVAIYQARMHSAWLISSSVISMLLIIFCIRSLNSRMFYKSVAYYLFARAWRKKLYRQKYKP
>NZ_CP014207.1|WP_013024477.1|1571032_1571869_-|5-dehydro-4-deoxy-D-glucuronate-isomerase
MEVRQSIHSAHANALDTQGLRDEFLIEKIFVPDEFTMVYSHIDRIIVGGVMPVGQAVAIGNDVGKQLGVSYFLERRELGMINIGGPGQVTIDGEDYEIGHREALYIGKGAREVLFSSLAPHRPAKFYYNCAPAHKTLPIRKVTAGDAAAVTLGDNLTSNRRTINKYLVPDVLETCQLSMGLTQLEPGNLWNTMPCHTHERRMEVYLYFDMDDDACVFHMMGEPQETRHLLVHNEQAVISPAWSIHSGVGTKAYTFIWGTVGENQVFDDMDHISVKDLR
>NZ_CP014207.1|WP_064373168.1|1570215_1570977_-|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD
MILNAFSLQDKIAVVSGCNTGLGQAMALGLAEAGCNIVGINQVEPDETIKQVTALGRRFLSLKADLRNIDAIPALLDSAIAYFDRIDILVNNAGMIRREDAINFSEQDWDDVMDLNIKSLFFMSQAAARHFIAQEDGGKIINIASMLSFQGGIRVPSYTASKSGVMGITRLLANEWAKHRINVNAIAPGYMATDNTQQLRADAQRSAEILDRIPAGRWGKPEDLMGPVVFLASRASDYMNGYTIAVDGGWLAR
>NZ_CP014207.1|WP_064373166.1|1568704_1569784_-|glycosyl-hydrolase-family-88
MELLSTARQLDRLLNGFTQLKDEGKFNEPNMDGTAGDYISFAHWEWPQGVGLFGLVRLWELTRRDDIYQIIENWFQQNIQKGLPPLNINTTAPMLPLSLLWAHNRAPHYQAVLDSWADRVMTELPRTPEQGFQHVVSDGINPMEIWDDTLFMVVLFLGHYGVASGRQALVDEAVRQFLLHARYLNDPQTGLWFHGWSFAEKSHFAQARWARGNAWITVGIIEFLELTQLRGGVRDYLLECLKTQINSLITLQSESGAWHTLLDHPDSYEEISATAGFGYGLLKGVRLGYGDERWLQAGLQALGAVQRNIDSSGTVHNVSYGTRMGRTLQFYKDIPLQPTGYGQALAILCLTEGLRHLKK
>NZ_CP014207.1|WP_013024487.1|1585915_1587169_-|D-galactonate-dehydratase-family-member-RspA
MSNLFITNVKTILTAPGGIDLVVVKIETNEPGLYGLGCATFTQRIYAVQSAIDEYLAPFLIGKDPARIEDIWQSAAVSGYWRNGPVMNNALSGIDMALWDIKGKQAGLPVYELLGGKCRDGIALYVHTDGADEVEVEDSARAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAYAKSIPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLEDPVAPENTEWLKMLRQQSSTPIAMGELFVNVNEWKPLIDNKLIDYIRCHISSIGGITPAKKIAIYSELNGVRTAWHSPGDISPIGVCANMHLDLSSPNFGIQEYTPMNDALREVFPGCPEVDQGYAYVNDKPGLGIDINEALAAKFPCEGGNPTWTMARTPDGTVWRP
>NZ_CP014207.1|WP_014595262.1|1587493_1588261_+|SDR-family-oxidoreductase
MTAMFDLTGKTALITGSSRGLGFAYAEALAAAGAEVILNGTREAVLNEAVEQLKNKGYRVSGRVFDVTCESAIEQVFASLDEQGIAVDIVINNAGIQYRKPMLELELENWQKVIDTNLTSAFLVSRAAAKRMIARDRGGKIINVGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNSALVDDARFDSWVKSSNPSQRWGRPEEVAGTAVFLSSPASDYINGQIIYVDGGWLAVL
>NZ_CP014207.1|WP_064373177.1|1588302_1589334_+|alcohol-dehydrogenase-catalytic-domain-containing-protein
MTHACVAKGKKEIAVEQRELKYSDDDVVVQVECGGICGSDIHYYHEGRAGLSVIKQPLVIGHEFVGRIFQAPAASGLEPGQKVAINPSQPCGQCEYCWAGKQNACATMRFMGSAQFTPHVNGGFAQYVVVPAKQCVAYDEQVPASVMAVAEPTAVVIHALNVAGSIVGKRVLVMGAGPIGALAIAAASASGAAEIVAFDPSERCRRIAVEMGADAAVDASDRAAVARYGENRGYFDVTLEASGAEAAIESSILVTRPGGVVVQIGMGKSPLNFPVAQMLVKEISWKGSFRFIDEFDVAVKWLEKGIIDPRPILSGNYAYHDIEAALKAASDKTQHSKVLVQFS
>NZ_CP014207.1|WP_014595264.1|1589476_1590874_+|MHS-family-MFS-transporter
MSHLNTNTTERNTSDLVRASVSGWLGTTLEFMDFQLYSLGAALVFHEVFFPEQSGAMALILAMGTYGAGYIARIVGAVFFGKMGDRVGRKKVLFITIALMGVCTTLIGVLPTYQQVGILAPLLLVALRIIQGLGAGAEISGASTMLAEYAPKGKKGIIASLVAMGTNCGTLSATAIWAAMFFFFTNDEVIAWAWRIPFLASFVVMGFAIWLRFNLKESPVFENVAESATVKPHDQPAQSVFQLIKGKAFWIATGLRFGQAGNSGIIQTFLAGYMVQTLLFNKAVPTDAIMVSSVIGFMTIPLIGWLSDRIGRRIPYRILTLGSIILAYPMISLIVDNAQAVSTIMVCLIVIHNIAVLGQAAIEGITMAEMFGSRNRFAQMAISKEIGGLFATGLGPLLAGIFCQLTGTWYPIAIMLIGYSCIGLLASLIMPEVVDRDLTAEADASGGVPDGCHPVAPSIRAGSGE
>NZ_CP014207.1|WP_013024491.1|1590973_1591684_+|FadR-family-transcriptional-regulator
MSIKSIQKQNVVNEVFEQIKAKLLDGSWSAGTRLPSEAELTHSFNVSRVSIRSAVQRLRDLGIVITRQGSGSYVCEDFSPQMLNHNARPLMHLSREAFNDMMVFRQTVEFKCVELAVEHATEEDIGLLEQALNNMLINKGDYKKYSEADYEFHLAIIRASHNSVFYNVMKSIKDIYYYYLEELNRSLGITLESVEAHIKVFMAIKNRDASSAVQVLNEAMKHNVVAIDMIKKEEGE
>NZ_CP014207.1|WP_014606658.1|1591959_1592628_-|YecA-family-protein
MKEGPLSEKELQWLEDMLEKYGSEASILDVSELDGLLTAVLSGPTTVEPSRWLVALWGGEKHIPKWSNEREMTRFMELSFQHMNDIADRLSEFPEQFEPLFGVREMEGLEFTVVEEWCYGYMRGVALTDWSALPAELQDSLDAIALHGTEENLEKVDALTPEEMESSIDAIRPAALALHDYWISQPEAIPQVQQPVTAEKQPGRNDPCPCGSGRKYKQCCLH
>NZ_CP014207.1|WP_024472366.1|1593101_1594244_+|serine-hydrolase
MISALLLAACGTLSQTSAPAGDKLYLTHSDFHDNLDDLVRHYMQRKQVSGISIAIIHHLNPTLFYSAGVTDDVHRYPITPETLFALGSLSKGVTAEVIIELVNEGQLHWSDTLADLLPSDVRLSQDARQITLLQLVTHTSGLPRQDMDLPMFMQFMGYLRSGQNFYGNLDSDDVLEYLADFSAPRQRGAQYSNLGYALLGYILRERCHSDIETLAHQRIFRPLGMNNTSFVPERLSGFSTRALGHAGDQPKLIPRGDLTPDWRFQRNMVAAGSLYSNARDLSVYLRAHLTAGSDPARNRAFAEINKGVYQQGAQTQNIAWVTDRLAGRNITYQVGYIGGYSAFIGFDKQAGNAIVVLQNAFNWSNYLGITLLLNLAEKDR
>NZ_CP014207.1|WP_014595268.1|1594375_1594882_+|RcnB-family-protein
MRRTQIAFISAGLLFGSLSLIPAAQAAGETTDNVPPPPQIQPANPTAQPGDNNAQPGAAAPAQPQAPMSSDSNDGITPTTPSQSAGNPGKPNYDLSTIIIDYKEHKIGDTVPDKYRSKTYTITEWQKRNLPAPQPDTHWAYINANYILITNDTGKIVMGKSGDIFFRG
>NZ_CP014207.1|WP_014606656.1|1595025_1595736_+|GNAT-family-N-acetyltransferase
MMSQHVNQYGQPVGQSMPDWQPRPLPQREVLQGQVCRLEPFSVASHAEALWQAWSLAEDGRDWTYLSDGPFNDEAAWLTHAATMEASQDPLHFSVIDVETGKAVGTLSLMRVDAQNGVMEVGYVTFSRLLKQTRMATEAHFLLMRYAFEQLGYRRYEWKCDSCNLPSRRAALRLGFRFEGEFRQARVYKGRTRDTSWFSIIDSEWPAVKNGLERWLAEANFTADGRQREKLETLRG
>NZ_CP014207.1|WP_013024496.1|1595758_1596205_-|DUF1640-domain-containing-protein
MTLTMMNTHKAFKRLQRAGINDRQAEAMVDIFSALKQDNALSRADVMQAFQRQNQHIFSLSTQLKKTESCLRTDVDELKADVSVLKTDVAVLKTDVSVLKTDVAELKTDVSVLKTDVGSLKNDMRWVQRLLMIMTTTLLMATIKYVLA

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Crispr_ID: NZ_CP014207_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014207_3

1978607-1978745

Unclear

Consensus_repeat	Method
CAAAAACAGGGCATTTATCGACGCTTACCATGATGACAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014207_3

>merge|NZ_CP014207|3|1978607-1978745|CRISPRCasFinder
CAAAAACAGGGCATTTATCGACGCTTACCATGATGACAAATCCGTGGCCAGAGAAGTGTCAGATACGCTTTGCCAGTTAAGTGCAGAACGTGCTGGCAACAAAAACAGGGCATTTATCGACGCTTACCATGATGACAAA

>NZ_CP014207|3|3|1978607-1978745|CRISPRCasFinder
CAAAAACAGGGCATTTATCGACGCTTACCATGATGACAAA	TCCGTGGCCAGAGAAGTGTCAGATACGCTTTGCCAGTTAAGTGCAGAACGTGCTGGCAA
CAAAAACAGGGCATTTATCGACGCTTACCATGATGACAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014207.1\|WP_014606466.1\|1977835_1978087_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|337856
NZ_CP014207.1\|WP_029568484.1\|1982960_1983689_-\|DUF2076-domain-containing-protein	unknown	unknown	gnl\|CDD\|370723
NZ_CP014207.1\|WP_015700863.1\|1977502_1977823_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014207.1\|WP_014606464.1\|1979294_1979597_+\|phosphate-starvation-inducible-protein-PsiF	unknown	unknown	gnl\|CDD\|183165
NZ_CP014207.1\|WP_014606468.1\|1976997_1977294_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|288556
NZ_CP014207.1\|WP_014606469.1\|1975829_1976477_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP014207.1\|WP_014593045.1\|1981401_1982214_-\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_CP014207.1\|WP_014606461.1\|1984607_1984799_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182421
NZ_CP014207.1\|WP_013024839.1\|1985277_1986189_-\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|234726
NZ_CP014207.1\|WP_019106660.1\|1973265_1974696_+\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NZ_CP014207.1\|WP_064374273.1\|1974721_1975735_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP014207.1\|WP_013024822.1\|1972937_1973252_+\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|376749
NZ_CP014207.1\|WP_014593046.1\|1982509_1982959_+\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
NZ_CP014207.1\|WP_013024821.1\|1971629_1972934_+\|PTS-cellobiose-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_CP014207.1\|WP_013024819.1\|1970646_1970826_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014207.1\|WP_013024838.1\|1984951_1985242_+\|pyrimidine/purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|182565
NZ_CP014207.1\|WP_014593043.1\|1978920_1979175_+\|anti-adapter-protein-IraP	unknown	unknown	gnl\|CDD\|236666
NZ_CP014207.1\|WP_014606463.1\|1979819_1981352_+\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|369639
NZ_CP014207.1\|WP_014606473.1\|1971237_1971546_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99906
NZ_CP014207.1\|WP_014593048.1\|1983971_1984496_+\|shikimate-kinase-AroL	unknown	unknown	gnl\|CDD\|235153

Protein	Function_ID	Function_description	E-value
NZ_CP014207.1\|WP_014606466.1\|1977835_1978087_-\|hypothetical-protein	gnl\|CDD\|337856	pfam10798, YmgB, Biofilm development protein YmgB/AriR. YmgB is part of the three gene cluster ymgABC which has a role in biofilm development and stability. YmgB represses biofilm formation in rich medium containing glucose, decreases cellular motility and also protects the cell from acid which indicates that YmgB has an important function in acid-resistance. YmgB binds as a dimer to genes which are important for biofilm formation via a ligand. Due to its important function in acid resistance it is also known as AriR (regulator of acid resistance influenced by indole).	2.22548e-09
NZ_CP014207.1\|WP_029568484.1\|1982960_1983689_-\|DUF2076-domain-containing-protein	gnl\|CDD\|370723	pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076). This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins.	1.79143e-59
NZ_CP014207.1\|WP_014593045.1\|1981401_1982214_-\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	3.98565e-124
NZ_CP014207.1\|WP_014606468.1\|1976997_1977294_+\|hypothetical-protein	gnl\|CDD\|288556	pfam11720, Inhibitor_I78, Peptidase inhibitor I78 family. This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.	7.27993e-09
NZ_CP014207.1\|WP_014606469.1\|1975829_1976477_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	4.3828e-13
NZ_CP014207.1\|WP_014606461.1\|1984607_1984799_+\|hypothetical-protein	gnl\|CDD\|182421	PRK10380, PRK10380, hypothetical protein; Provisional.	8.38434e-27
NZ_CP014207.1\|WP_013024839.1\|1985277_1986189_-\|recombination-associated-protein-RdgC	gnl\|CDD\|234726	PRK00321, rdgC, recombination associated protein; Reviewed.	0
NZ_CP014207.1\|WP_019106660.1\|1973265_1974696_+\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NZ_CP014207.1\|WP_013024822.1\|1972937_1973252_+\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|376749	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.	6.12884e-33
NZ_CP014207.1\|WP_064374273.1\|1974721_1975735_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.02116e-104
NZ_CP014207.1\|WP_014606464.1\|1979294_1979597_+\|phosphate-starvation-inducible-protein-PsiF	gnl\|CDD\|183165	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF.	1.71388e-21
NZ_CP014207.1\|WP_014593046.1\|1982509_1982959_+\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	1.80968e-78
NZ_CP014207.1\|WP_013024821.1\|1971629_1972934_+\|PTS-cellobiose-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	1.53528e-141
NZ_CP014207.1\|WP_013024838.1\|1984951_1985242_+\|pyrimidine/purine-nucleoside-phosphorylase	gnl\|CDD\|182565	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase.	1.23427e-64
NZ_CP014207.1\|WP_014593043.1\|1978920_1979175_+\|anti-adapter-protein-IraP	gnl\|CDD\|236666	PRK10244, PRK10244, anti-adapter protein IraP.	3.96403e-29
NZ_CP014207.1\|WP_014606463.1\|1979819_1981352_+\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|369639	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	2.78256e-47
NZ_CP014207.1\|WP_014606473.1\|1971237_1971546_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	1.4088e-44
NZ_CP014207.1\|WP_014593048.1\|1983971_1984496_+\|shikimate-kinase-AroL	gnl\|CDD\|235153	PRK03731, aroL, shikimate kinase AroL.	2.13601e-93

>NZ_CP014207.1|WP_014606466.1|1977835_1978087_-|hypothetical-protein
MRVQSNSASRAITDYFNSPDWNVPPESDLLAVIMRELMEAGQPTTNKAVIARVINKLEFEGDEQRLQRYRALLARLMEARPHE
>NZ_CP014207.1|WP_015700863.1|1977502_1977823_+|hypothetical-protein
MEYFQRISVLFLLLVSPVALASSPEAWQKSQQVMRQACINASTLSKVKVLGQVVEYDDSVGYSALLLEGLYPQKHMKNRRGRELCLFQRSSGRASVSEANQYRLAK
>NZ_CP014207.1|WP_014606468.1|1976997_1977294_+|hypothetical-protein
MNHYGKALVAAGFLLLTGCQSATQSDKAAVPLDAQADSCGASQYQHFVGKPLSAIDNQRFTQKVRAIPWNSAVTMDFNFTRLNFMADKSGNISRVYCG
>NZ_CP014207.1|WP_014606469.1|1975829_1976477_-|CPBP-family-intramembrane-metalloprotease
MNTNSDRVTLTLFYVGSFVVYYLVTMLITLFPNYGILRNDGLLVPVLCLFEFAVIYPLYRFYCQRRTDIPLGFLRSGQTLLFIGALFILMAAQTQYLQPEGWLVAQTQQGRSSMLILLLTAVLLAPVFEEVLFRGFLLQGFLLWAPNSRFACMLLTSLLFALMHTQYVHWETVVALTLFSLLLCYARLRSNSLALPVFLHTLNNLIAILPAWYFA
>NZ_CP014207.1|WP_064374273.1|1974721_1975735_-|LacI-family-transcriptional-regulator
MITMLDVARKAGVSKATVSRVLAGNRYVSKSTQQKVYQAIAETGYRPNLLARSLATQKSQNIGLIVTHSLFNGPYFSELLFQAATLTNNYGRQLILADGKTCADDERAAIEFLLDLRCDAIIIYPRFLDTEALDAIIEQHEIPIMVVNRQLPRHPAHCVWATHQHNTFQATRYLIARGHHDIAFIRGMTGSPTAAARLAGYEQALAEQGLADRACIVQGAWTPASGMAAAKQLLDAGVTFSALMASNDDMAIGAALALHAAGKRLPQDVSLLGFDDIRMAEFFLPPLTTVHVPVAEMIQHTLAQLVAMLEGQEVEALPPFSGHLIERASVADGPHKR
>NZ_CP014207.1|WP_019106660.1|1973265_1974696_+|glycoside-hydrolase-family-1-protein
MQHSTLTAFPDGFLWGASTSAYQVEGGWDADGKGPSVIDKATFSQAITDFTVCSDHYHRFKEDIALLAEMGLKTYRFSIAWSRLYPEGDGALNEAGVAFYQQLIDEICRHGITPLVTLYHFDLPWALQQDGGWSSRRTVAAFERFAITCFEQFGSQVKYWLTINEQNMMILKGDVIGTLPPGTADPQKTLYQQNHHMMLAQAKAMIACHERLPDAKIGPAPNISCVYAASSRPEDVLAADNFSAIRNWLYLDLAVHGRYNPVVWAFLKQRGWLPTIEDEDMAIIAAGQPDFIAFNYYASATVGAEGEHHDPDSRPHADQQMAGIDRSVYVGCNNPHLQQNQFGWYIDPVGFRITARQIYARYALPLIVTENGLGAFDTLAADNKVHDDYRIDYLREHIAQLQLAIADGVELFGYCPWSAIDLVSTHQGISKRYGFIYVNRDEKALKDLARYRKKSFFWYQKLIRSNGATLNASVDY
>NZ_CP014207.1|WP_013024822.1|1972937_1973252_+|PTS-lactose/cellobiose-transporter-subunit-IIA
MEIDESTVIELIIQAGEARSCSMEALRAARQQNWERADSMLTAATAAAKAAHQIQTRLIGADEGSGKIPVNLIMVHAQDHLMNAMLCRELAEEIIQLRRELAAR
>NZ_CP014207.1|WP_013024821.1|1971629_1972934_+|PTS-cellobiose-transporter-subunit-IIC
MSRLSESLFGVIENRISPLAGRLSSQRHVIAIRDGFIASMPFLIVGSFMLLFAHPPFSADSSWAFAQWWLGMVKAHEEQIMMPYNMTMGIMALYIASAIAYNLANSYKMNGFMAASLSLMAFLVVAAPQTGKMLPVGSLGGEGIFTAILVALFATELMHFLQKHNIGFKLPEQVPPKIRQSFDLLIPIITIFITLFPLSLWVQAQFGMLLPQAIMAIFSPIISASDSLPAVLVAVLLCHLLWFAGIHGAVIVGGILQAFWLTNLGLNQQALNAGEPVSHVFIEPFWQFFIVIGGSGSTMGLVLLYLRSQSAHLRSIGKLSIVPSMFNINEPVIFGSPVVMNPILFIPFVLAPLVNAVIAWIATKTNLINHVISLAPWTTPAPIGAAWSTGWDWRVIVLIAVLVTIATLIYYPFFKMYERQLLQQELSAAQPVKE
>NZ_CP014207.1|WP_014606473.1|1971237_1971546_+|PTS-sugar-transporter-subunit-IIB
MPKILLCCAAGMSTSMVVQKMEKAAKEQGIAVEIKAVGIEEFTDLIADYDCCLLGPQIKYKLADFEPVAQQHSKPIAVINSMDYGMMKGEKILSDALKLIHS
>NZ_CP014207.1|WP_013024819.1|1970646_1970826_-|hypothetical-protein
MLIGFVLLVSACGHDACEALPVSERIYPTKAACEVMANRIHKVRPNVVLLCGEVHRSDN
>NZ_CP014207.1|WP_014593043.1|1978920_1979175_+|anti-adapter-protein-IraP
MKNLIAELLITLAEKEEASKEQVVQIEALELVITAMLRMMPPEQHQSLVNSIDTAMIHAGVDHNDHNAALLKNAVTRLLHRPHS
>NZ_CP014207.1|WP_014606464.1|1979294_1979597_+|phosphate-starvation-inducible-protein-PsiF
MKGNILMIVLAGIMMSSHASAADKTPQQQKMAMCNEHASSQSLKGDVRKQFMSDCLKKDSKVADMSPQQIKMKTCNLQAGDKKLTGDARKTFMSQCLKKS
>NZ_CP014207.1|WP_014606463.1|1979819_1981352_+|Rieske-2Fe-2S-domain-containing-protein
MNYQFVIALKDLPQRQPVKKKLGETEFLLIREADSVQAFQAKCPHAGAPLEQGAICGDRLICPWHKAAFELSSGKMCEPLALADLKQYPVRIENGQILVNPKAMSPASPVGSGASAPVFVVLGGGAAGSAALWRLRHDGFKGRLVLVESEPEAPYDRTALTKFVPSGKMDIDDVPSLLGSDILDHVERIQKRVERVDNEAHRLVFADDSTLQFDKLLIATGAEPVKPSLAGADLAGVHILRNKQHTASLLAAVDRSQQIVIIGNSFIGMELASSLRNRDVEVTVIARHALPFAAQFGEAIGRYFHQLHQANGVTFVEGEIASLQGENHVTGVRLKTGQQIAADVVLFATGVKPATSFIHDLPRVEDGSLQTDEQLRVAENVWVAGDIATYPSAQGPLRIEHFRVAEQQGQTAAMNMLGNIHHYDRVPFFWTAHYGTRYEYIGHATDWDDYQQVGSLEEKTFMAFYGKEGRLAAVFSCGLYTLTAALVEKMQEPMTMEQALAWYQAHHSAQ
>NZ_CP014207.1|WP_014593045.1|1981401_1982214_-|pyrroline-5-carboxylate-reductase
MLEKKIGFIGGGNMAKAIIGGLINSGQMTPSAIWIYDRKPSTNQQMAEQYGINAAESAEALAQHVDILFGAVKPNVILKVLKELANSLKKEAVVVSIAAGVTLDNLASVLGHDRKIIRAMPNTPSLVGEGMTSVTPNVLVEQSETDEVVAIFESFGQAAVVDEYLIHSVVGVSGSAPAYVFMFIEAMADAAVAGGMPRAQAYRFAAQAVKGSAQMVLETGKHPGELKDMVCSPGGTTIEAVKVLEEKGFRSAVIEAMQQCMAKSDKLSRS
>NZ_CP014207.1|WP_014593046.1|1982509_1982959_+|YaiI/YqxD-family-protein
MSIWVDADACPNVIKDVLYRAADRTQTMVTFVANQFLRVPPSPWLRTLQVPAGFDVADNEIVKRVQAGDLVITADIPLAAEVIEKGASALNPRGERYSPATIRERLTMRDFMDTMRASGVQTGGPAAMSPRDRQQFANELDSWLRQRQR
>NZ_CP014207.1|WP_029568484.1|1982960_1983689_-|DUF2076-domain-containing-protein
MQREEQELIENLFSRLKQAESQTAARDAAAEQLIKQHLQAQPGAPYYMAQAILIQEAALKKLNERVQELENHLAQQQAQQQQQQQQPKSSGGFLSSLFGGGSQQAQPAQPSPQWNSAPQQPPQQPYASAPAPRGSGFLGGALQTAVGVAGGVVMADMLTSMFHHSQPEEIVNIINEPQSLPQVDDSLNTFNGGNDHSFLDQGTGADNQSFLDQSNGWSDTYADNGDLNDFGGNDYDDDDSFV
>NZ_CP014207.1|WP_014593048.1|1983971_1984496_+|shikimate-kinase-AroL
MSLSIFLIGARGCGKTTIGEALSHALGYAFRDTDHHLQFTTQRTVAEIVAAEGWESFRARETDSLKAVTAPSTIIATGGGMVLAEGNRRYMREHGQVIWLSAPPDILARRLESQPENAQRPTLTGRPIAEEMGEVLRARAHLYRSAAHHEVNAMLAPERVVEQILQSLSLARAS
>NZ_CP014207.1|WP_014606461.1|1984607_1984799_+|hypothetical-protein
MPTRPPYPREARVVTVEKGPEGKKVTSWQLRADHPKPDSLISEHESEQEAHDAKDRYEDVEKE
>NZ_CP014207.1|WP_013024838.1|1984951_1985242_+|pyrimidine/purine-nucleoside-phosphorylase
MLNVSEYFDGKVKSIGFDSASTGRASVGVMAEGEYTFGTAQPEEMTVVSGSMKVLLPGETEWKWFEAGSVFNVPGHSEFHLQVGEPSAYLCRYLKD
>NZ_CP014207.1|WP_013024839.1|1985277_1986189_-|recombination-associated-protein-RdgC
MLWFKNMMVYRLNRDIPLSADDMEKQLEAFTFSPCGSQDMSKTGWVAPMGNRSDALTHVNNGQIVICARKEEKILPSPVVKQALEAKIDKLEAEQSRKLKKTEKDSLKDEVLHSLLPRAFSRFSQTYMWIDTVNNLIMVDCASAKKAEDTLALLRKSLGSLPVVPLTLESPIELTLTEWVRSGDVPAGFALMDEAELKAILEDGGVIRCKKQDLVCDEIANHIEAGKLVTKLALDWQERIQFVLSDDGSVKRLKFSDTLRDQNDDIDREDFAQRFDADFILMTSELAALTSNLVEALGGEAQR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP014207_2	2.5\|1581078\|25\|NZ_CP014207\|CRISPRCasFinder	1581078-1581102	25	NZ_CP014207.1	1584966-1584990	0	1.0
NZ_CP014207_2	2.17\|1581654\|25\|NZ_CP014207\|CRISPRCasFinder	1581654-1581678	25	NZ_CP014207.1	1584966-1584990	2	0.92

1. spacer 2.5|1581078|25|NZ_CP014207|CRISPRCasFinder matches to position: 1584966-1584990, mismatch: 0, identity: 1.0

ggcgggcgccgacagctccctgatc	CRISPR spacer
ggcgggcgccgacagctccctgatc	Protospacer
*************************

2. spacer 2.17|1581654|25|NZ_CP014207|CRISPRCasFinder matches to position: 1584966-1584990, mismatch: 2, identity: 0.92

ggcgggtgacgacagctccctgatc	CRISPR spacer
ggcgggcgccgacagctccctgatc	Protospacer
******.* ****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014207_2	2.11\|1581366\|25\|NZ_CP014207\|CRISPRCasFinder	1581366-1581390	25	NZ_CP016082	Streptomyces sp. SAT1 plasmid unnamed2, complete sequence	16052-16076	2	0.92
NZ_CP014207_2	2.3\|1580982\|25\|NZ_CP014207\|CRISPRCasFinder	1580982-1581006	25	NZ_CP022991	Paraburkholderia aromaticivorans strain BN5 plasmid pBN1, complete sequence	466448-466472	3	0.88
NZ_CP014207_2	2.7\|1581174\|25\|NZ_CP014207\|CRISPRCasFinder	1581174-1581198	25	NZ_CP048425	Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence	220598-220622	3	0.88
NZ_CP014207_2	2.17\|1581654\|25\|NZ_CP014207\|CRISPRCasFinder	1581654-1581678	25	NZ_CP016082	Streptomyces sp. SAT1 plasmid unnamed2, complete sequence	16052-16076	3	0.88
NZ_CP014207_2	2.17\|1581654\|25\|NZ_CP014207\|CRISPRCasFinder	1581654-1581678	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	303458-303482	3	0.88
NZ_CP014207_2	2.17\|1581654\|25\|NZ_CP014207\|CRISPRCasFinder	1581654-1581678	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	304756-304780	3	0.88
NZ_CP014207_2	2.17\|1581654\|25\|NZ_CP014207\|CRISPRCasFinder	1581654-1581678	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	305416-305440	3	0.88
NZ_CP014207_2	2.24\|1581990\|25\|NZ_CP014207\|CRISPRCasFinder	1581990-1582014	25	NC_015465	Synechococcus phage S-CBS3, complete genome	16068-16092	3	0.88
NZ_CP014207_2	2.5\|1581078\|25\|NZ_CP014207\|CRISPRCasFinder	1581078-1581102	25	HQ225832	Tetrasphaera phage TJE1, complete genome	8414-8438	4	0.84
NZ_CP014207_2	2.6\|1581126\|25\|NZ_CP014207\|CRISPRCasFinder	1581126-1581150	25	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	410392-410416	4	0.84
NZ_CP014207_2	2.9\|1581270\|25\|NZ_CP014207\|CRISPRCasFinder	1581270-1581294	25	NZ_CP013600	Rhizobium sp. N741 plasmid pRspN741e, complete sequence	723809-723833	4	0.84
NZ_CP014207_2	2.9\|1581270\|25\|NZ_CP014207\|CRISPRCasFinder	1581270-1581294	25	NZ_CP013504	Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence	723821-723845	4	0.84
NZ_CP014207_2	2.9\|1581270\|25\|NZ_CP014207\|CRISPRCasFinder	1581270-1581294	25	NZ_CP013510	Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence	722250-722274	4	0.84
NZ_CP014207_2	2.9\|1581270\|25\|NZ_CP014207\|CRISPRCasFinder	1581270-1581294	25	NZ_CP013521	Rhizobium sp. N113 plasmid pRspN113d, complete sequence	726497-726521	4	0.84
NZ_CP014207_2	2.9\|1581270\|25\|NZ_CP014207\|CRISPRCasFinder	1581270-1581294	25	NZ_CP013494	Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence	713380-713404	4	0.84
NZ_CP014207_2	2.9\|1581270\|25\|NZ_CP014207\|CRISPRCasFinder	1581270-1581294	25	NZ_CP013594	Rhizobium sp. N871 plasmid pRspN871d, complete sequence	723821-723845	4	0.84
NZ_CP014207_2	2.10\|1581318\|25\|NZ_CP014207\|CRISPRCasFinder	1581318-1581342	25	MN484601	Gordonia phage Sixama, complete genome	4322-4346	4	0.84
NZ_CP014207_2	2.12\|1581414\|25\|NZ_CP014207\|CRISPRCasFinder	1581414-1581438	25	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	410392-410416	4	0.84
NZ_CP014207_2	2.13\|1581462\|25\|NZ_CP014207\|CRISPRCasFinder	1581462-1581486	25	NZ_CP048425	Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence	220598-220622	4	0.84
NZ_CP014207_2	2.16\|1581606\|25\|NZ_CP014207\|CRISPRCasFinder	1581606-1581630	25	MN484601	Gordonia phage Sixama, complete genome	4322-4346	4	0.84
NZ_CP014207_2	2.18\|1581702\|25\|NZ_CP014207\|CRISPRCasFinder	1581702-1581726	25	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	410392-410416	4	0.84
NZ_CP014207_2	2.19\|1581750\|25\|NZ_CP014207\|CRISPRCasFinder	1581750-1581774	25	NZ_CP048425	Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence	220598-220622	4	0.84
NZ_CP014207_2	2.23\|1581942\|25\|NZ_CP014207\|CRISPRCasFinder	1581942-1581966	25	NC_047783	Klebsiella phage vB_KpnP_KpV48, complete genome	3937-3961	4	0.84
NZ_CP014207_2	2.25\|1582038\|25\|NZ_CP014207\|CRISPRCasFinder	1582038-1582062	25	NZ_CP028972	Aminobacter sp. MSH1 plasmid pUSP4, complete sequence	38380-38404	4	0.84
NZ_CP014207_2	2.4\|1581030\|25\|NZ_CP014207\|CRISPRCasFinder	1581030-1581054	25	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	163595-163619	5	0.8
NZ_CP014207_2	2.22\|1581894\|25\|NZ_CP014207\|CRISPRCasFinder	1581894-1581918	25	NC_021909	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence	540938-540962	5	0.8
NZ_CP014207_2	2.22\|1581894\|25\|NZ_CP014207\|CRISPRCasFinder	1581894-1581918	25	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	380738-380762	5	0.8

1. spacer 2.11|1581366|25|NZ_CP014207|CRISPRCasFinder matches to NZ_CP016082 (Streptomyces sp. SAT1 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.92

ggccggtgacgacagctccctgatc	CRISPR spacer
ggccggtgacgacggctccctgagc	Protospacer
*************.********* *

2. spacer 2.3|1580982|25|NZ_CP014207|CRISPRCasFinder matches to NZ_CP022991 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN1, complete sequence) position: , mismatch: 3, identity: 0.88

cgcaggtgaagagagcagccagatg	CRISPR spacer
cgcaggtgaagagagcagccatcag	Protospacer
*********************   *

3. spacer 2.7|1581174|25|NZ_CP014207|CRISPRCasFinder matches to NZ_CP048425 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

cgcgcagaagggcagcgatcttacg	CRISPR spacer
cgcgctgaagggcagcgatcttcgg	Protospacer
***** ****************  *

4. spacer 2.17|1581654|25|NZ_CP014207|CRISPRCasFinder matches to NZ_CP016082 (Streptomyces sp. SAT1 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

ggcgggtgacgacagctccctgatc	CRISPR spacer
ggccggtgacgacggctccctgagc	Protospacer
*** *********.********* *

5. spacer 2.17|1581654|25|NZ_CP014207|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

ggcgggtgacgacagctccctgatc	CRISPR spacer
ggcgggtgacgagagttccctgaac	Protospacer
************ **.******* *

6. spacer 2.17|1581654|25|NZ_CP014207|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

ggcgggtgacgacagctccctgatc	CRISPR spacer
ggcgggtgacgagagttccctgaac	Protospacer
************ **.******* *

7. spacer 2.17|1581654|25|NZ_CP014207|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

ggcgggtgacgacagctccctgatc	CRISPR spacer
ggcgggtgacgagagttccctgaac	Protospacer
************ **.******* *

8. spacer 2.24|1581990|25|NZ_CP014207|CRISPRCasFinder matches to NC_015465 (Synechococcus phage S-CBS3, complete genome) position: , mismatch: 3, identity: 0.88

agccagctacaacagtgtgctaacg	CRISPR spacer
tgccaactacaacagcgtgctaacg	Protospacer
 ****.*********.*********

9. spacer 2.5|1581078|25|NZ_CP014207|CRISPRCasFinder matches to HQ225832 (Tetrasphaera phage TJE1, complete genome) position: , mismatch: 4, identity: 0.84

ggcgggcgccgacagctccctgatc	CRISPR spacer
ttcggtcgccgacagctacctgatc	Protospacer
  *** *********** *******

10. spacer 2.6|1581126|25|NZ_CP014207|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

ggcgggcgaagacagctcgctgaca	CRISPR spacer
ggcgggtgaagacagctcgccgagg	Protospacer
******.*************.** .

11. spacer 2.9|1581270|25|NZ_CP014207|CRISPRCasFinder matches to NZ_CP013600 (Rhizobium sp. N741 plasmid pRspN741e, complete sequence) position: , mismatch: 4, identity: 0.84

ggccggggaagaaagcacccagaca	CRISPR spacer
ggccgcggaagaaatcacccagatc	Protospacer
***** ******** ********.

12. spacer 2.9|1581270|25|NZ_CP014207|CRISPRCasFinder matches to NZ_CP013504 (Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence) position: , mismatch: 4, identity: 0.84

ggccggggaagaaagcacccagaca	CRISPR spacer
ggccgcggaagaaatcacccagatc	Protospacer
***** ******** ********.

13. spacer 2.9|1581270|25|NZ_CP014207|CRISPRCasFinder matches to NZ_CP013510 (Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence) position: , mismatch: 4, identity: 0.84

ggccggggaagaaagcacccagaca	CRISPR spacer
ggccgcggaagaaatcacccagatc	Protospacer
***** ******** ********.

14. spacer 2.9|1581270|25|NZ_CP014207|CRISPRCasFinder matches to NZ_CP013521 (Rhizobium sp. N113 plasmid pRspN113d, complete sequence) position: , mismatch: 4, identity: 0.84

ggccggggaagaaagcacccagaca	CRISPR spacer
ggccgcggaagaaatcacccagatc	Protospacer
***** ******** ********.

15. spacer 2.9|1581270|25|NZ_CP014207|CRISPRCasFinder matches to NZ_CP013494 (Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence) position: , mismatch: 4, identity: 0.84

ggccggggaagaaagcacccagaca	CRISPR spacer
ggccgcggaagaaatcacccagatc	Protospacer
***** ******** ********.

16. spacer 2.9|1581270|25|NZ_CP014207|CRISPRCasFinder matches to NZ_CP013594 (Rhizobium sp. N871 plasmid pRspN871d, complete sequence) position: , mismatch: 4, identity: 0.84

ggccggggaagaaagcacccagaca	CRISPR spacer
ggccgcggaagaaatcacccagatc	Protospacer
***** ******** ********.

17. spacer 2.10|1581318|25|NZ_CP014207|CRISPRCasFinder matches to MN484601 (Gordonia phage Sixama, complete genome) position: , mismatch: 4, identity: 0.84

cgcgcagaagggcagcgaccttacg	CRISPR spacer
cgcgcagaagggcggcgaccataat	Protospacer
*************.****** **

18. spacer 2.12|1581414|25|NZ_CP014207|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

ggcgggcgaagacagctcgctgaca	CRISPR spacer
ggcgggtgaagacagctcgccgagg	Protospacer
******.*************.** .

19. spacer 2.13|1581462|25|NZ_CP014207|CRISPRCasFinder matches to NZ_CP048425 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

cgcgcagaagggcagcgatcttact	CRISPR spacer
cgcgctgaagggcagcgatcttcgg	Protospacer
***** ****************

20. spacer 2.16|1581606|25|NZ_CP014207|CRISPRCasFinder matches to MN484601 (Gordonia phage Sixama, complete genome) position: , mismatch: 4, identity: 0.84

cgcgcagaagggcagcgaccttacg	CRISPR spacer
cgcgcagaagggcggcgaccataat	Protospacer
*************.****** **

21. spacer 2.18|1581702|25|NZ_CP014207|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

ggcgggcgaagacagctcgctgaca	CRISPR spacer
ggcgggtgaagacagctcgccgagg	Protospacer
******.*************.** .

22. spacer 2.19|1581750|25|NZ_CP014207|CRISPRCasFinder matches to NZ_CP048425 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

cgcgcagaagggcagcgatcttact	CRISPR spacer
cgcgctgaagggcagcgatcttcgg	Protospacer
***** ****************

23. spacer 2.23|1581942|25|NZ_CP014207|CRISPRCasFinder matches to NC_047783 (Klebsiella phage vB_KpnP_KpV48, complete genome) position: , mismatch: 4, identity: 0.84

agccggggcaaatagttcactgatc	CRISPR spacer
agccggggcaaatagttcaaagaaa	Protospacer
*******************  **

24. spacer 2.25|1582038|25|NZ_CP014207|CRISPRCasFinder matches to NZ_CP028972 (Aminobacter sp. MSH1 plasmid pUSP4, complete sequence) position: , mismatch: 4, identity: 0.84

ggcgagagaaggcagtgacctcact	CRISPR spacer
ggcgagagaaggcagtgacacgacc	Protospacer
******************* . **.

25. spacer 2.4|1581030|25|NZ_CP014207|CRISPRCasFinder matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 5, identity: 0.8

cggcatgaaaggcagcgatctcacc	CRISPR spacer
aattatgaaaggcagcgatctcaac	Protospacer
 . .******************* *

26. spacer 2.22|1581894|25|NZ_CP014207|CRISPRCasFinder matches to NC_021909 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence) position: , mismatch: 5, identity: 0.8

cgcgcagaacgaaagcgatctcatc	CRISPR spacer
cgcgcagaccgaaagcgatctatgt	Protospacer
******** ************   .

27. spacer 2.22|1581894|25|NZ_CP014207|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.8

cgcgcagaacgaaagcgatctcatc	CRISPR spacer
agcgcagaacgaaagcgatgtcgcg	Protospacer
 ****************** **..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

292505 : 321452

Erwinia_phage(70.37%)

tail,tRNA,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064372775.1\|292505_293519_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.5e-105	57.7
WP_001144069.1\|293797_294013_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_064372776.1\|294129_295875_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.6e-72	37.5
WP_013027259.1\|296188_298033_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
WP_029569167.1\|298105_298621_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_029569168.1\|299999_301196_-	hypothetical protein	NA	NA	NA	NA
WP_029569169.1\|301909_302101_-	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_029569170.1\|302239_302770_+	hypothetical protein	NA	NA	NA	NA
WP_014604972.1\|303149_303371_-	late control protein ogr/delta	F1BUT0	Erwinia_phage	8.2e-22	68.1
WP_029569172.1\|303444_304602_-	cytochrome c1	A0A0M5M5V5	Salmonella_phage	2.4e-80	43.3
WP_014604970.1\|304603_305107_-\|tail	phage tail protein	F1BUT6	Erwinia_phage	4.4e-55	69.5
WP_014604969.1\|305113_307180_-\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	9.8e-08	46.3
WP_013027268.1\|307172_307295_-\|tail	GpE family phage tail protein	Q858U8	Yersinia_virus	7.4e-09	61.5
WP_013027270.1\|307327_307624_-\|tail	phage tail assembly protein	F1BUU0	Erwinia_phage	6.0e-28	72.2
WP_013027271.1\|307678_308191_-\|tail	phage major tail tube protein	F1BUU2	Erwinia_phage	3.3e-82	85.3
WP_014594650.1\|308203_309373_-\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	3.3e-202	89.7
WP_014604968.1\|309851_310385_-\|tail	tail fiber assembly protein	A0A0A7NRZ7	Enterobacteria_phage	8.0e-39	47.8
WP_014604966.1\|312001_312535_-\|tail	phage tail protein I	F1BUP2	Erwinia_phage	4.2e-80	79.1
WP_013027277.1\|312527_313436_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	5.0e-134	82.8
WP_013027278.1\|313439_313790_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	2.1e-48	81.9
WP_013027279.1\|313786_314371_-\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	9.9e-83	79.4
WP_014594656.1\|314463_314934_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	1.3e-48	63.2
WP_014604964.1\|315020_315455_-	hypothetical protein	F1BUQ1	Erwinia_phage	1.6e-37	58.3
WP_014604963.1\|315451_315961_-	lysozyme	E5G6N1	Salmonella_phage	4.8e-57	66.3
WP_014604962.1\|315944_316169_-	hypothetical protein	F1BUQ4	Erwinia_phage	9.8e-31	82.4
WP_014604961.1\|316174_316378_-\|tail	tail protein X	F1BUQ5	Erwinia_phage	2.9e-26	80.6
WP_013027286.1\|317070_317295_-	hypothetical protein	F1BUR9	Erwinia_phage	2.6e-15	64.6
WP_064372782.1\|317502_319566_-	replication endonuclease	F1BUS0	Erwinia_phage	4.1e-264	70.7
WP_013027288.1\|319562_319790_-	hypothetical protein	F1BUS2	Erwinia_phage	1.7e-14	51.4
WP_013027289.1\|319789_320035_-	DUF2732 family protein	F1BUS3	Erwinia_phage	5.2e-09	54.1
WP_014604958.1\|320074_320443_-	hypothetical protein	F1BUS4	Erwinia_phage	9.4e-39	58.3
WP_015699474.1\|320867_321452_+	phage repressor protein	A0A218M4J1	Erwinia_phage	2.5e-33	42.2

DBSCAN-SWA_2

1480185 : 1489835

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064373062.1\|1480185_1481439_+	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.7e-71	40.1
WP_064373064.1\|1481484_1483857_-	S8 family peptidase	NA	NA	NA	NA
WP_064373066.1\|1483874_1484861_-	ATP-binding protein	A0A2K9R7H3	Dishui_lake_phycodnavirus	3.8e-10	24.6
WP_064373069.1\|1485052_1485241_-	hypothetical protein	NA	NA	NA	NA
WP_064373072.1\|1485326_1485599_-	hypothetical protein	A0A2I8TV89	Erwinia_phage	3.4e-09	48.0
WP_064373074.1\|1486135_1486393_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.1e-20	60.0
WP_071887035.1\|1486421_1486961_+	ash family protein	Q7M2A7	Enterobacteria_phage	2.3e-25	62.0
WP_064373078.1\|1486957_1487182_+	hypothetical protein	NA	NA	NA	NA
WP_064373080.1\|1487178_1487499_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_064373082.1\|1487510_1489835_+	DNA primase	Q7M2A8	Enterobacteria_phage	2.5e-310	69.1

DBSCAN-SWA_3

1935557 : 1945644

Streptococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064373277.1\|1935557_1936691_-	porin OmpC	Q1MVN1	Enterobacteria_phage	1.7e-107	55.4
WP_024471994.1\|1937042_1938146_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.9e-59	42.0
WP_064373280.1\|1938155_1939409_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	5.1e-92	45.8
WP_029569687.1\|1939768_1940488_+	LexA family transcriptional regulator	A0A2I6PIE7	Escherichia_phage	6.5e-44	35.8
WP_013024787.1\|1940909_1941188_+	hypothetical protein	NA	NA	NA	NA
WP_064373283.1\|1941384_1941852_+	lysozyme	H9C148	Vibrio_phage	1.0e-29	45.3
WP_013024789.1\|1941848_1942196_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	5.6e-17	45.1
WP_013024790.1\|1942192_1942483_+	hypothetical protein	NA	NA	NA	NA
WP_014593017.1\|1942682_1944431_+	amylovoran biosynthesis protein AmsF precursor	A0A1S6L3G8	Erwinia_phage	2.2e-157	46.7
WP_013024792.1\|1944732_1945644_+	lipid A hydroxylase LpxO	H8ZJK8	Ostreococcus_tauri_virus	3.0e-33	35.8

DBSCAN-SWA_4

2817822 : 2831557

Tupanvirus(11.11%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014593593.1\|2817822_2819751_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.1e-125	36.8
WP_026020952.1\|2819754_2820306_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.9e-15	31.8
WP_004157374.1\|2820406_2820604_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_006118956.1\|2820648_2821005_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_106120997.1\|2821126_2821171_+	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_013025578.1\|2821319_2822303_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.4e-33	42.1
WP_064373668.1\|2822317_2824705_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	1.2e-09	32.0
WP_006118960.1\|2824709_2825012_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	5.6e-13	40.0
WP_064373669.1\|2825111_2826101_+	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	1.5e-14	27.2
WP_013025582.1\|2826134_2826680_+	glutathione peroxidase	A0A1S7DM81	Molluscum_contagiosum_virus	1.8e-14	40.7
WP_019105319.1\|2826680_2827430_+	vitamin B12 ABC transporter ATP-binding protein BtuD	NA	NA	NA	NA
WP_014605964.1\|2827496_2827955_+	endopeptidase	A0A217EQL1	Bacillus_phage	5.5e-12	38.4
WP_064373671.1\|2828247_2828982_+	EAL domain-containing protein	NA	NA	NA	NA
WP_064373672.1\|2829072_2830509_+	YdiU family protein	NA	NA	NA	NA
WP_013025587.1\|2830510_2831557_-	3-deoxy-7-phosphoheptulonate synthase	A0A0B5IW14	Pandoravirus	3.0e-82	47.9

DBSCAN-SWA_5

3693339 : 3700482

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064374050.1\|3693339_3693888_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.8e-54	58.5
WP_064374051.1\|3693891_3694770_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.1e-107	63.8
WP_064374053.1\|3694815_3695712_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.0e-25	35.3
WP_064374055.1\|3695711_3696797_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.1e-98	53.4
WP_064374057.1\|3696939_3698016_-	UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase	NA	NA	NA	NA
WP_015699941.1\|3698526_3699540_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	4.5e-75	43.7
WP_014594076.1\|3699585_3700482_-	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	6.7e-46	40.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014207

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection