CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014161	Aerococcus urinae strain CCUG36881 chromosome, complete genome	2 crisprs	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,RT,cas3,DinG	0	14	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014161_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014161_1

166956-169117

TypeI-E

I-C,I-E,II-B

Consensus_repeat	Method
CTTTTTCCCGCACATGCGGGGGTGATCC	PILER-CR
CTTTTTCCCGCACATGCGGGGGTGATCC	CRISPRCasFinder
CTTTTTCCCGCACATGCGGGGGTGATCC	CRT

35 spacers

The CRISPR arrays of NZ_CP014161_1

>merge|NZ_CP014161|1|166956-169117|PILER-CR,CRISPRCasFinder,CRT
CTTTTTCCCGCACATGCGGGGGTGATCCTTCTCAACTCAAAAGTTAGGCGAAAGAATTAACCTTTTTCCCGCACATGCGGGGGTGATCCACGGCTATACCCAAAGGGATATAGCTAATATTGTCTTTTTCCCGCACATGCGGGGGTGATCCTATCACTACCATTGAAGGCAATACTGGGAATCCCTTTTTCCCGCACATGCGGGGGTGATCCTCAAACACGATCAAGCTAATAAATGTTTTCATGCTTTTTCCCGCACATGCGGGGGTGATCCTAGTTACATTTCTAACACCACCAGCAAACACTTCTTTTTCCCGCACATGCGGGGGTGATCCTTATAAAGAGATCGCTTTTGAAATGGATCAAACCTTTTTCCCGCACATGCGGGGGTGATCCCACTCACCTCCTTCCTTTAAGCGAAAGAGCGGACTTTTTCCCGCACATGCGGGGGTGATCCTGCATCAAAGACAAACCGTTACCTAGTTCGTTTCTTTTTCCCGCACATGCGGGGGTGATCCCAGTTAAGTCATGGGAGCGGTCAACAGGCTCAACTTTTTCCCGCACATGCGGGGGTGATCCTCATCACCCCTTAGCTGATCTCACAAGAGCGATCTTTTTCCCGCACATGCGGGGGTGATCCCGAACATATCAGTCTAAATCATGAGGAAGTCGACTTTTTCCCGCACATGCGGGGGTGATCCCAAAGCCTCCCACATCTTTAATCTCGTCCCGCTCTTTTTCCCGCACATGCGGGGGTGATCCTCATCACCCCTTAGCTGATCTCACAAGAGCGATCTTTTTCCCGCACATGCGGGGGTGATCCCAAAGAATTAGGAGGATAAAAACATGCCAGAAACTTTTTCCCGCACATGCGGGGGTGATCCCTATGAAGTTGTAAGATGAGTTCTTCGTCTACCCTTTTTCCCGCACATGCGGGGGTGATCCTCCTTATAGTTACCTGCACAGATTTGATACTTACTTTTTCCCGCACATGCGGGGGTGATCCCGAACATATCAGTCTAAATCATGAGGAAGTCGACTTTTTCCCGCACATGCGGGGGTGATCCCAAAATAAGAAGTTTGAGAAAACAAAGAGGTTGCTTTTTCCCGCACATGCGGGGGTGATCCCGTGTTAAGATAAAAGTAAGTTAAGGGAAAGCACTTTTTCCCGCACATGCGGGGGTGATCCTTGGTTTGTCCTAGTATGTAGTCGATGCTTACCCTTTTTCCCGCACATGCGGGGGTGATCCTACAAGCTATAACTATCATCACTCATAATATATCTTTTTCCCGCACATGCGGGGGTGATCCTTATTGCCGTAATTAAGTCTACTATTTGGCGTTTCTTTTTCCCGCACATGCGGGGGTGATCCTTCGAAACTAGGCGCTTTGCCTAGTCTAGGGAACTTTTTCCCGCACATGCGGGGGTGATCCCCAATTGGTCTATGTTTAATTTCATTTCAATTTCTTTTTCCCGCACATGCGGGGGTGATCCTGTCGTAAGCGATCAAGCTAATAAATGTTTTCACTTTTTCCCGCACATGCGGGGGTGATCCTACCCTGACGATCGTTTATACGATATAGATGAACTTTTTCCCGCACATGCGGGGGTGATCCTGGGAGTCTGAAACTCTATACCTTAAAAAGACACTTTTTCCCGCACATGCGGGGGTGATCCATCGAGCAGATATTACTAGTCAGATTAAAAATACTTTTTCCCGCACATGCGGGGGTGATCCACTATCAAGTGATTCTTTTAAATCTCCTTGATACTTTTTCCCGCACATGCGGGGGTGATCCTTCAGACCGGCCGTCTACCTTGGCTAGTAACTCCTTTTCCCGCACATGCGGGGGTGATCCTAAAATCAGTTATCGAGAAGCCCAACAGATTCTCTTTTTCCCGCACATGCGGGGGTGATCCATCGAGCAGATATTACTAGTCAGATTAAAAATACTTTTTCCCGCACATGCGGGGGTGATCCACTATCAAGTGATTCTTTTAAATCTCCTTGATACTTTTTCCCGCACATGCGGGGGTGATCCTTCAGACCGGCCGTCTACCTTGGCTAGTAACTCCTTTTCCCGCACATGCGGGGGTGATCCCAGTGGAATAAGTCATTCTGTCACCAGCTAAACCTTTTTCCGCCCATGCGAGTGTTAATC

>NZ_CP014161|1|1|166956-169057|PILER-CR
CTTTTTCCCGCACATGCGGGGGTGATCC	TTCTCAACTCAAAAGTTAGGCGAAAGAATTAAC
CTTTTTCCCGCACATGCGGGGGTGATCC	ACGGCTATACCCAAAGGGATATAGCTAATATTGT
CTTTTTCCCGCACATGCGGGGGTGATCC	TATCACTACCATTGAAGGCAATACTGGGAATCC
CTTTTTCCCGCACATGCGGGGGTGATCC	TCAAACACGATCAAGCTAATAAATGTTTTCATG
CTTTTTCCCGCACATGCGGGGGTGATCC	TAGTTACATTTCTAACACCACCAGCAAACACTT
CTTTTTCCCGCACATGCGGGGGTGATCC	TTATAAAGAGATCGCTTTTGAAATGGATCAAAC
CTTTTTCCCGCACATGCGGGGGTGATCC	CACTCACCTCCTTCCTTTAAGCGAAAGAGCGGA
CTTTTTCCCGCACATGCGGGGGTGATCC	TGCATCAAAGACAAACCGTTACCTAGTTCGTTT
CTTTTTCCCGCACATGCGGGGGTGATCC	CAGTTAAGTCATGGGAGCGGTCAACAGGCTCAA
CTTTTTCCCGCACATGCGGGGGTGATCC	TCATCACCCCTTAGCTGATCTCACAAGAGCGAT
CTTTTTCCCGCACATGCGGGGGTGATCC	CGAACATATCAGTCTAAATCATGAGGAAGTCGA
CTTTTTCCCGCACATGCGGGGGTGATCC	CAAAGCCTCCCACATCTTTAATCTCGTCCCGCT
CTTTTTCCCGCACATGCGGGGGTGATCC	TCATCACCCCTTAGCTGATCTCACAAGAGCGAT
CTTTTTCCCGCACATGCGGGGGTGATCC	CAAAGAATTAGGAGGATAAAAACATGCCAGAAA
CTTTTTCCCGCACATGCGGGGGTGATCC	CTATGAAGTTGTAAGATGAGTTCTTCGTCTACC
CTTTTTCCCGCACATGCGGGGGTGATCC	TCCTTATAGTTACCTGCACAGATTTGATACTTA
CTTTTTCCCGCACATGCGGGGGTGATCC	CGAACATATCAGTCTAAATCATGAGGAAGTCGA
CTTTTTCCCGCACATGCGGGGGTGATCC	CAAAATAAGAAGTTTGAGAAAACAAAGAGGTTG
CTTTTTCCCGCACATGCGGGGGTGATCC	CGTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA
CTTTTTCCCGCACATGCGGGGGTGATCC	TTGGTTTGTCCTAGTATGTAGTCGATGCTTACC
CTTTTTCCCGCACATGCGGGGGTGATCC	TACAAGCTATAACTATCATCACTCATAATATAT
CTTTTTCCCGCACATGCGGGGGTGATCC	TTATTGCCGTAATTAAGTCTACTATTTGGCGTTT
CTTTTTCCCGCACATGCGGGGGTGATCC	TTCGAAACTAGGCGCTTTGCCTAGTCTAGGGAA
CTTTTTCCCGCACATGCGGGGGTGATCC	CCAATTGGTCTATGTTTAATTTCATTTCAATTT
CTTTTTCCCGCACATGCGGGGGTGATCC	TGTCGTAAGCGATCAAGCTAATAAATGTTTTCA
CTTTTTCCCGCACATGCGGGGGTGATCC	TACCCTGACGATCGTTTATACGATATAGATGAA
CTTTTTCCCGCACATGCGGGGGTGATCC	TGGGAGTCTGAAACTCTATACCTTAAAAAGACA
CTTTTTCCCGCACATGCGGGGGTGATCC	ATCGAGCAGATATTACTAGTCAGATTAAAAATA
CTTTTTCCCGCACATGCGGGGGTGATCC	ACTATCAAGTGATTCTTTTAAATCTCCTTGATA
CTTTTTCCCGCACATGCGGGGGTGATCC	TTCAGACCGGCCGTCTACCTTGGCTAGTAACT
CCTTTTCCCGCACATGCGGGGGTGATCC	TAAAATCAGTTATCGAGAAGCCCAACAGATTCT
CTTTTTCCCGCACATGCGGGGGTGATCC	ATCGAGCAGATATTACTAGTCAGATTAAAAATA
CTTTTTCCCGCACATGCGGGGGTGATCC	ACTATCAAGTGATTCTTTTAAATCTCCTTGATA
CTTTTTCCCGCACATGCGGGGGTGATCC	TTCAGACCGGCCGTCTACCTTGGCTAGTAACT
CCTTTTCCCGCACATGCGGGGGTGATCC

>NZ_CP014161|1|1|166956-169117|CRISPRCasFinder
CTTTTTCCCGCACATGCGGGGGTGATCC	TTCTCAACTCAAAAGTTAGGCGAAAGAATTAAC
CTTTTTCCCGCACATGCGGGGGTGATCC	ACGGCTATACCCAAAGGGATATAGCTAATATTGT
CTTTTTCCCGCACATGCGGGGGTGATCC	TATCACTACCATTGAAGGCAATACTGGGAATCC
CTTTTTCCCGCACATGCGGGGGTGATCC	TCAAACACGATCAAGCTAATAAATGTTTTCATG
CTTTTTCCCGCACATGCGGGGGTGATCC	TAGTTACATTTCTAACACCACCAGCAAACACTT
CTTTTTCCCGCACATGCGGGGGTGATCC	TTATAAAGAGATCGCTTTTGAAATGGATCAAAC
CTTTTTCCCGCACATGCGGGGGTGATCC	CACTCACCTCCTTCCTTTAAGCGAAAGAGCGGA
CTTTTTCCCGCACATGCGGGGGTGATCC	TGCATCAAAGACAAACCGTTACCTAGTTCGTTT
CTTTTTCCCGCACATGCGGGGGTGATCC	CAGTTAAGTCATGGGAGCGGTCAACAGGCTCAA
CTTTTTCCCGCACATGCGGGGGTGATCC	TCATCACCCCTTAGCTGATCTCACAAGAGCGAT
CTTTTTCCCGCACATGCGGGGGTGATCC	CGAACATATCAGTCTAAATCATGAGGAAGTCGA
CTTTTTCCCGCACATGCGGGGGTGATCC	CAAAGCCTCCCACATCTTTAATCTCGTCCCGCT
CTTTTTCCCGCACATGCGGGGGTGATCC	TCATCACCCCTTAGCTGATCTCACAAGAGCGAT
CTTTTTCCCGCACATGCGGGGGTGATCC	CAAAGAATTAGGAGGATAAAAACATGCCAGAAA
CTTTTTCCCGCACATGCGGGGGTGATCC	CTATGAAGTTGTAAGATGAGTTCTTCGTCTACC
CTTTTTCCCGCACATGCGGGGGTGATCC	TCCTTATAGTTACCTGCACAGATTTGATACTTA
CTTTTTCCCGCACATGCGGGGGTGATCC	CGAACATATCAGTCTAAATCATGAGGAAGTCGA
CTTTTTCCCGCACATGCGGGGGTGATCC	CAAAATAAGAAGTTTGAGAAAACAAAGAGGTTG
CTTTTTCCCGCACATGCGGGGGTGATCC	CGTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA
CTTTTTCCCGCACATGCGGGGGTGATCC	TTGGTTTGTCCTAGTATGTAGTCGATGCTTACC
CTTTTTCCCGCACATGCGGGGGTGATCC	TACAAGCTATAACTATCATCACTCATAATATAT
CTTTTTCCCGCACATGCGGGGGTGATCC	TTATTGCCGTAATTAAGTCTACTATTTGGCGTTT
CTTTTTCCCGCACATGCGGGGGTGATCC	TTCGAAACTAGGCGCTTTGCCTAGTCTAGGGAA
CTTTTTCCCGCACATGCGGGGGTGATCC	CCAATTGGTCTATGTTTAATTTCATTTCAATTT
CTTTTTCCCGCACATGCGGGGGTGATCC	TGTCGTAAGCGATCAAGCTAATAAATGTTTTCA
CTTTTTCCCGCACATGCGGGGGTGATCC	TACCCTGACGATCGTTTATACGATATAGATGAA
CTTTTTCCCGCACATGCGGGGGTGATCC	TGGGAGTCTGAAACTCTATACCTTAAAAAGACA
CTTTTTCCCGCACATGCGGGGGTGATCC	ATCGAGCAGATATTACTAGTCAGATTAAAAATA
CTTTTTCCCGCACATGCGGGGGTGATCC	ACTATCAAGTGATTCTTTTAAATCTCCTTGATA
CTTTTTCCCGCACATGCGGGGGTGATCC	TTCAGACCGGCCGTCTACCTTGGCTAGTAACT
CCTTTTCCCGCACATGCGGGGGTGATCC	TAAAATCAGTTATCGAGAAGCCCAACAGATTCT
CTTTTTCCCGCACATGCGGGGGTGATCC	ATCGAGCAGATATTACTAGTCAGATTAAAAATA
CTTTTTCCCGCACATGCGGGGGTGATCC	ACTATCAAGTGATTCTTTTAAATCTCCTTGATA
CTTTTTCCCGCACATGCGGGGGTGATCC	TTCAGACCGGCCGTCTACCTTGGCTAGTAACT
CCTTTTCCCGCACATGCGGGGGTGATCC	CAGTGGAATAAGTCATTCTGTCACCAGCTAAA
CCTTTTTCCGCCCATGCGAGTGTTAATC

>NZ_CP014161|1|1|166956-169117|CRT
CTTTTTCCCGCACATGCGGGGGTGATCC	TTCTCAACTCAAAAGTTAGGCGAAAGAATTAAC
CTTTTTCCCGCACATGCGGGGGTGATCC	ACGGCTATACCCAAAGGGATATAGCTAATATTGT
CTTTTTCCCGCACATGCGGGGGTGATCC	TATCACTACCATTGAAGGCAATACTGGGAATCC
CTTTTTCCCGCACATGCGGGGGTGATCC	TCAAACACGATCAAGCTAATAAATGTTTTCATG
CTTTTTCCCGCACATGCGGGGGTGATCC	TAGTTACATTTCTAACACCACCAGCAAACACTT
CTTTTTCCCGCACATGCGGGGGTGATCC	TTATAAAGAGATCGCTTTTGAAATGGATCAAAC
CTTTTTCCCGCACATGCGGGGGTGATCC	CACTCACCTCCTTCCTTTAAGCGAAAGAGCGGA
CTTTTTCCCGCACATGCGGGGGTGATCC	TGCATCAAAGACAAACCGTTACCTAGTTCGTTT
CTTTTTCCCGCACATGCGGGGGTGATCC	CAGTTAAGTCATGGGAGCGGTCAACAGGCTCAA
CTTTTTCCCGCACATGCGGGGGTGATCC	TCATCACCCCTTAGCTGATCTCACAAGAGCGAT
CTTTTTCCCGCACATGCGGGGGTGATCC	CGAACATATCAGTCTAAATCATGAGGAAGTCGA
CTTTTTCCCGCACATGCGGGGGTGATCC	CAAAGCCTCCCACATCTTTAATCTCGTCCCGCT
CTTTTTCCCGCACATGCGGGGGTGATCC	TCATCACCCCTTAGCTGATCTCACAAGAGCGAT
CTTTTTCCCGCACATGCGGGGGTGATCC	CAAAGAATTAGGAGGATAAAAACATGCCAGAAA
CTTTTTCCCGCACATGCGGGGGTGATCC	CTATGAAGTTGTAAGATGAGTTCTTCGTCTACC
CTTTTTCCCGCACATGCGGGGGTGATCC	TCCTTATAGTTACCTGCACAGATTTGATACTTA
CTTTTTCCCGCACATGCGGGGGTGATCC	CGAACATATCAGTCTAAATCATGAGGAAGTCGA
CTTTTTCCCGCACATGCGGGGGTGATCC	CAAAATAAGAAGTTTGAGAAAACAAAGAGGTTG
CTTTTTCCCGCACATGCGGGGGTGATCC	CGTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA
CTTTTTCCCGCACATGCGGGGGTGATCC	TTGGTTTGTCCTAGTATGTAGTCGATGCTTACC
CTTTTTCCCGCACATGCGGGGGTGATCC	TACAAGCTATAACTATCATCACTCATAATATAT
CTTTTTCCCGCACATGCGGGGGTGATCC	TTATTGCCGTAATTAAGTCTACTATTTGGCGTTT
CTTTTTCCCGCACATGCGGGGGTGATCC	TTCGAAACTAGGCGCTTTGCCTAGTCTAGGGAA
CTTTTTCCCGCACATGCGGGGGTGATCC	CCAATTGGTCTATGTTTAATTTCATTTCAATTT
CTTTTTCCCGCACATGCGGGGGTGATCC	TGTCGTAAGCGATCAAGCTAATAAATGTTTTCA
CTTTTTCCCGCACATGCGGGGGTGATCC	TACCCTGACGATCGTTTATACGATATAGATGAA
CTTTTTCCCGCACATGCGGGGGTGATCC	TGGGAGTCTGAAACTCTATACCTTAAAAAGACA
CTTTTTCCCGCACATGCGGGGGTGATCC	ATCGAGCAGATATTACTAGTCAGATTAAAAATA
CTTTTTCCCGCACATGCGGGGGTGATCC	ACTATCAAGTGATTCTTTTAAATCTCCTTGATA
CTTTTTCCCGCACATGCGGGGGTGATCC	TTCAGACCGGCCGTCTACCTTGGCTAGTAACT
CCTTTTCCCGCACATGCGGGGGTGATCC	TAAAATCAGTTATCGAGAAGCCCAACAGATTCT
CTTTTTCCCGCACATGCGGGGGTGATCC	ATCGAGCAGATATTACTAGTCAGATTAAAAATA
CTTTTTCCCGCACATGCGGGGGTGATCC	ACTATCAAGTGATTCTTTTAAATCTCCTTGATA
CTTTTTCCCGCACATGCGGGGGTGATCC	TTCAGACCGGCCGTCTACCTTGGCTAGTAACT
CCTTTTCCCGCACATGCGGGGGTGATCC	CAGTGGAATAAGTCATTCTGTCACCAGCTAAA
CCTTTTTCCGCCCATGCGAGTGTTAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014161.1\|WP_060777631.1\|170725_171817_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014161.1\|WP_060777618.1\|157022_157463_-\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|377953
NZ_CP014161.1\|WP_060777627.1\|166557_166860_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014161.1\|WP_060777624.1\|163291_164419_+\|glycosyltransferase-family-1-protein	unknown	unknown	gnl\|CDD\|340842
NZ_CP014161.1\|WP_060777628.1\|169133_169388_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP014161.1\|WP_060777622.1\|161519_161822_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP014161.1\|WP_060777623.1\|162138_163287_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|215310
NZ_CP014161.1\|WP_060777635.1\|174920_175916_+\|D-2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240662
NZ_CP014161.1\|WP_060777630.1\|169993_170707_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014161.1\|WP_060777636.1\|176071_177379_+\|SWIM-zinc-finger-family-protein	unknown	unknown	gnl\|CDD\|227059
NZ_CP014161.1\|WP_060777634.1\|173319_174669_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl\|CDD\|283235
NZ_CP014161.1\|WP_060777620.1\|159249_159954_+\|DUF554-domain-containing-protein	unknown	unknown	gnl\|CDD\|377371
NZ_CP014161.1\|WP_060777621.1\|160026_161235_-\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|366058
NZ_CP014161.1\|WP_060777633.1\|172395_173253_+\|glutathione-S-transferase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|223512
NZ_CP014161.1\|WP_060777619.1\|157599_158916_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl\|CDD\|283235
NZ_CP014161.1\|WP_060777632.1\|171958_172303_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014161.1\|WP_060777625.1\|164474_165800_+\|DUF308-domain-containing-protein	unknown	unknown	gnl\|CDD\|225786
NZ_CP014161.1\|WP_060777637.1\|177506_178352_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197321
NZ_CP014161.1\|WP_060777626.1\|165898_166516_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|240029
NZ_CP014161.1\|WP_060777629.1\|169552_169735_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP014161.1\|WP_060777618.1\|157022_157463_-\|PH-domain-containing-protein	gnl\|CDD\|377953	pfam08000, bPH_1, Bacterial PH domain. This family contains many bacterial hypothetical proteins. The structures of Structure 3hsa and Structure 3dcx show similarities to the PH or pleckstrin homology domain. First evidence of PH-like domains in bacteria suggests role in cell envelope stress response.	2.937e-35
NZ_CP014161.1\|WP_060777624.1\|163291_164419_+\|glycosyltransferase-family-1-protein	gnl\|CDD\|340842	cd03814, GT4-like, glycosyltransferase family 4 proteins. This family is most closely related to the GT4 family of glycosyltransferases and includes a sequence annotated as alpha-D-mannose-alpha(1-6)phosphatidyl myo-inositol monomannoside transferase from Bacillus halodurans. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria and eukaryotes.	2.15121e-105
NZ_CP014161.1\|WP_060777628.1\|169133_169388_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.31517e-07
NZ_CP014161.1\|WP_060777622.1\|161519_161822_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	7.71008e-22
NZ_CP014161.1\|WP_060777623.1\|162138_163287_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|215310	PLN02572, PLN02572, UDP-sulfoquinovose synthase.	0
NZ_CP014161.1\|WP_060777635.1\|174920_175916_+\|D-2-hydroxyacid-dehydrogenase	gnl\|CDD\|240662	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains. D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.	7.72469e-180
NZ_CP014161.1\|WP_060777634.1\|173319_174669_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl\|CDD\|283235	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein. This family consists of several bacterial branched-chain amino acid transport proteins which are responsible for the transport of leucine, isoleucine and valine via proton motive force.	3.1574e-129
NZ_CP014161.1\|WP_060777636.1\|176071_177379_+\|SWIM-zinc-finger-family-protein	gnl\|CDD\|227059	COG4715, COG4715, Uncharacterized conserved protein [Function unknown].	6.45832e-05
NZ_CP014161.1\|WP_060777620.1\|159249_159954_+\|DUF554-domain-containing-protein	gnl\|CDD\|377371	pfam04474, DUF554, Protein of unknown function (DUF554). Family of uncharacterized prokaryotic proteins. Multiple predicted transmembrane regions suggest that the region is membrane associated.	3.95913e-76
NZ_CP014161.1\|WP_060777621.1\|160026_161235_-\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	3.94536e-70
NZ_CP014161.1\|WP_060777633.1\|172395_173253_+\|glutathione-S-transferase-C-terminal-domain-containing-protein	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	2.86924e-74
NZ_CP014161.1\|WP_060777619.1\|157599_158916_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl\|CDD\|283235	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein. This family consists of several bacterial branched-chain amino acid transport proteins which are responsible for the transport of leucine, isoleucine and valine via proton motive force.	9.30792e-95
NZ_CP014161.1\|WP_060777625.1\|164474_165800_+\|DUF308-domain-containing-protein	gnl\|CDD\|225786	COG3247, HdeD, Uncharacterized conserved protein [Function unknown].	6.94457e-06
NZ_CP014161.1\|WP_060777637.1\|177506_178352_+\|exodeoxyribonuclease-III	gnl\|CDD\|197321	cd09087, Ape1-like_AP-endo, Human Ape1-like subfamily of the ExoIII family apurinic/apyrimidinic (AP) endonucleases. This subfamily includes human Ape1 (also known as Apex, Hap1, or Ref-1) and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Ape1 and Ape2 in humans. Ape1 is found in this subfamily, it exhibits strong AP-endonuclease activity but shows weak 3'-5' exonuclease and 3'-phosphodiesterase activities. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes exonuclease III (ExoIII) and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	1.12612e-113
NZ_CP014161.1\|WP_060777626.1\|165898_166516_+\|NUDIX-hydrolase	gnl\|CDD\|240029	cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	3.39277e-60

>NZ_CP014161.1|WP_060777627.1|166557_166860_+|hypothetical-protein
MMPYKNPSPGKIKNAHPLLVTCMQCKHDLCVYWKVGRGNLIKLQIHRIIEAEYDFGQRDNALLCPHCQEQLGSLSEHKGRPCYFLHRGRVQTKRLQHYKC
>NZ_CP014161.1|WP_060777626.1|165898_166516_+|NUDIX-hydrolase
MEADKLVEIAIELQSIAQAGLHYGRDDFDRERYQRIRDIAAEIMVKKTQLNWQEVQDLFCGDEGYQTPKVDTRAAIIQDDEILLVKERNGLWSLPGGWCEMNMSPMENTIKEAKEEAGREVKVKSVIAVQDRDKHNQPPYAYSIVKIFYLCEDLGGHYQDNIETSASQYFKADQLPDLDPERTTAEQIAMCFQAYRSEDWQTQFD
>NZ_CP014161.1|WP_060777625.1|164474_165800_+|DUF308-domain-containing-protein
MKENKWEFSQLISGILWILAGLAFILWQGQALLRLNSLVAWVIGLQGIFRILAQVIFDKNDGGAKNRIFQLFVALGQVVVAFIMLSFPISSTYFLMRVIGIYQLLMGLVSFVSYCLMRIDHVPNRLKRLLFALVHLIFALASLFLPIQDHNVLFWLGLYLVFIGVTYISDARTSLPSRSQDQKIKRRFRFPVPIVFNLLEPNRLANKLNHFIRQEVEDELAFSTAYQDYMEENETGAVDSLQVLVQTSNAHLDLIGHLNIAYHGTVYSYGNHDVDSGHLFRSIGDGVLCKIDHQKSIEFELANGITIFEYDIQLNQRQKEALEAKLAQIDDLLVPWAPKTESQWDSFGGRLKRATDCDMFKFKAGQYKTYFVFGSNCVLFCDEIIGSIGLDQFLMVGVMTPGTYFDYFNKQYEKGSTPVINRRIYSTDLLQFTQLDKLKDR
>NZ_CP014161.1|WP_060777624.1|163291_164419_+|glycosyltransferase-family-1-protein
MKIVIITETFLPATDGVVTRLIHAIDYMLECGHEVLIYAPEMEDMPIQYKDALIIPFKAVWFPFYRYRPWAIPTTDIQKQLAIDEPDIVHSVNPVGFAAAGIHYAVKMDIPLVASFHTNVPQYLSYYHLDVLSPVIWSYLRHWHNLAAANMVTSQAMYDLLNDNAIENLVILPKGVDLDQRDPKFYSDYMRQRLTADPKRDKLLLFVGRVAAEKEIDTLLPWLEARDDVNLAIVGDGPEKAALEEKFAHLPVTFTGFLHGEELSAAYASADAFIFPSVSETLGLVITEAMASGLPVIAAESAPTKEQIKHLENGLIYQQGDKASLDQCLALLDQEEVVENIVAKGQDYAQQFSWKNASRAMVDVYESVLEKQEMK
>NZ_CP014161.1|WP_060777623.1|162138_163287_+|NAD-dependent-epimerase/dehydratase-family-protein
MRIIVAGGDGFCGWPTALYLSKQGHDVAIVDNLVRRQYDKELNSNSITPIASLNERVDKWKELTGKDITVYQGDLNHYDFLSIVFKEFQPEAFVHYAEQRSAPYSMIDRDHARYTQANNVLGNLNVLFAIHDYAPDCHLIKLGTMGEYGTPNIDIEEGWLEVEHKGRRDRMLYPKKPGSFYHLTKVHDSHNIEFACRSWGIRATDLNQGVVYGVNTQETAMDPVLYNRFDYDGIFGTVFNRFVVQTANGLPMSVYGKGGQTRGFINIEDTVRCIEIAALNPAERGEFRVFNQMTEQFSVMDMAHKVEKVAQEMGLNPVINHVDNPRVEEEEHYFNAVMTELKDLGLDPHYLTDEVTKNLLELAMDNKDRAHQEVIMNSPSWK
>NZ_CP014161.1|WP_060777622.1|161519_161822_-|rhodanese-like-domain-containing-protein
MKEVTIEEFHKIVENEDDLNILDVRPRELYEEGHVPGAKHFPLSQIEDHLDELDKDKHYYAICHDGKGSKKASEILDENGFDVTNVEKGVPDYPGELEKA
>NZ_CP014161.1|WP_060777621.1|160026_161235_-|dicarboxylate/amino-acid:cation-symporter
MTKRLEKRKIGLVPRIILAIILGIIVGRLPIVPEFVLQIFATFTTIFSDFLSFVIPFMIIGFVVQGIADLSHGAGKLLGITVLTSYISTVIGGLLAYLVASNLFPLFITSDLVDQLSQAGEGIKPLFTIPLEPFFDVTGAIIFAFMMGLGISWLRQHGRGKVLYEAFSDFGGIISQVLATIIVPLLPVYIFGNIANLAYTGTVFAILNVFWKVFICVLIMHLLYITFLFFVFGTYAGKNPIELIKNQIPGYMTALGTQSSAATIPVNVKCALKNGVSEGIANFVVPLCATIHLAGSIITITSCATTLLLIYDMPHGFLMMLGFILMLGVAMVAAPGTPGGAIMSALPFLPMIGIASQAMQQIMISLYITQDSFGTAANVSGDNAIAVFIDKIYQEKIKSSDQ
>NZ_CP014161.1|WP_060777620.1|159249_159954_+|DUF554-domain-containing-protein
MAITGALVNAGLILLAGILGRFFGHFIQDDLAKAINQVLGLSVVLIAIQGALTTKSIIVVILSMVVGVIIGQLMDIDGRLNRWGNRIQSRLAGPDPESQFAEGLVTAVLITCVGAMGIVGAIQSGLYHDHATLFAKSILDFIIVLILGATYGMSPAFASLPILLYEGGIALLAQWLAPYLPEASLNELSAVGSLLVGVIGLSLFGVKDFKVSNMLPATFIPLILVPLFQYLGLY
>NZ_CP014161.1|WP_060777619.1|157599_158916_-|branched-chain-amino-acid-transport-system-II-carrier-protein
MTIKTKDILIIGFALFAIFFGAGNLIFPPYLGIVSGESWLSAALGFLTSDPFFPILGVLVTIYLGGRANDLGKRIHPQFGTVLAGIAIILIGPLFSVPRTGATTHEVFIQSLWPNIPIWLSSLVFFALTAYLALNPSKVINNIGKYLTPGILIILFFLVLVTLFNPPAPAAPSQIDQAFAYGFKEGYQTMDALGASLMASIVMSELKARGYSDKKTQMKAGALVGLVAFVLLAVVYLSLTYAGSTVSSLMGVNIDRTASFNGTVTAILGQWGHLIMGICVALACLTTAIGLTSAFSNFFVEVSKGRWSYQAITLVAVAIEFLISLLGTNQIIFLASFVLTTIYPIFMVLILFSVFDRKISYDLTYTGAVIGAGAVGLVQALAGTGLGALESLFGPLAQFTYQLPLSQLGLEWLLPALLVAGAFSLYAAMKDKEPASNT
>NZ_CP014161.1|WP_060777618.1|157022_157463_-|PH-domain-containing-protein
MAFNLSNLMQGALGNFSQKDQQELNEEYGDFLFKDEEIYSGYQLVRDAIIFTNIRIILVDKQGASGKKTALRSLYLSHIVDVEMESAGLAFDDSEITITYLKNIYRRPREEDTQNLTFEFPKQTDILPLYRFLGNLVIENRREINQ
>NZ_CP014161.1|WP_060777628.1|169133_169388_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MYLYYAIFTPSEDKYAIEFPDLDDAYSFGEDMNDALYMAKDLLEGWLIVAKKEGDSIPKASSPDDLKISEDALLVPIKVDLELS
>NZ_CP014161.1|WP_060777629.1|169552_169735_+|hypothetical-protein
MTQEKKRPRGRPATGRKRDKTLNMKFTEEERKYLKAQAKEHDLTLSDYFLTVAKAYEKKH
>NZ_CP014161.1|WP_060777630.1|169993_170707_+|hypothetical-protein
MAESARSVFISGSRTQNQLSQEVLDSIDAIIGQGIKINLGDSNKGIDKEVADLLRLENYKHVEIYTINQKPRIAIEKDWKVRYVHPDDGLNGQEQQMMKDRQMVNDSHWGLAIFDPIKKNRFGALQVSSGTLRNTIQMLLQGKSVKFFYVFENATRSHNLKGEEGLKQLEALINSYQGERLSREEKDLILSSRGVNKDDQPATIKRNKIFSKFTDLLQSERQLTASKDSDFQQTTLF
>NZ_CP014161.1|WP_060777631.1|170725_171817_+|hypothetical-protein
MTVKQAEKLKHIHPIEEITDFEAYYLDWYKDKVNEDRGPEHTAIGKSIYQLKYVYTPQMQQPYNDLPDWLKKAYMNELFKLAGFVGKGLGEIDLAFDFLIPAPSFNPRTRWNPNGQVKFIYDLVNVLSEQLGLPYHKGCLFKKDNVAAKDSIVSSENFEASCIRLPKDFPSYSKTGSAQPIGLVIDDLFERGDTAKISLGLLKAKNPEMQFKFLSCTKNKYHGLGKKVQVKFASFREFIAKNNSEFIKLKVVSPGDFYDKTVCVFSNNAGYEVFKEQLIKHNSNSYNISSTNDPIFSIKIKQGKGGYLDFFGLLDTPQEQIHQDLDLGFDPNFGYDFGLWDTPREPSNPNFGPDSFFDDDLPF
>NZ_CP014161.1|WP_060777632.1|171958_172303_+|hypothetical-protein
MKEDSNHFQKRRHFIHSLWQKDRYFCLAAMILEIAFVGIMVEFLVNPSWSIALVFLFLIWLLLTAFVNGSLLVRNLPKGHYWYRVGSILVEKSIEALLVGLVAAGAIMILTLAA
>NZ_CP014161.1|WP_060777633.1|172395_173253_+|glutathione-S-transferase-C-terminal-domain-containing-protein
MTTVYAKDYDYPVESGRYQLVVSQSCPFAQRTDIVRSLLGLNDVIGKSLTSPIKTDKIWDFSNQARGKDAVLDVEYLSELYHNTKSEYEGPYSVPALIDLTSKKVVNQESLDIIKDFSTRFKDLGTSQVGDLYPKDQRQAIDQCFDWVGTDLIGAPTKAHKASDQADYEQYADQFFDRLAEIDQALADHDYLVGDHLTLADVVLYTPLVRFDTTYYTAFQVNKYRLSDFPNLWSHLQKLHQIPAFQQSTNFQAIKEGTYLGKNGRDSFDKEVLPQGPVLDMWEVK
>NZ_CP014161.1|WP_060777634.1|173319_174669_-|branched-chain-amino-acid-transport-system-II-carrier-protein
MSKIALNWKERLIIALMLFGLFFGAGNIIFPVSLGQQAAGNVGLAVTGFNITAVGLPLLAIAAMGFSETESVFQIANKVNRPFAYFFTIALYLTIGPLFATPRLATVSYEVGITDFVPDHLETPALFLYSALFFLLVLCFSLRPSKIIEWVGKYLTPAFLILLGVILVRALFDTGSFRQVLYPTPAYQMAPLAMGLLEGYNTMDSLAGLAFGIIIIQSIRDFGIQQPRQISREVMTSGSLSILLMAFIYIALALLGTHSLQFIPLSVNGGQALSLITRHYFGLAGQVLLAVMITVACLKTAIGLVVALAETFATFHFFNLKQKHWTIIACLLAFLVANIGFDAILSLSLPVLMLLYPLACVLILLSLLPQSWQSPALYQVTMAVTFIPACLDFIKASPDFISQSALGSTLTQWASHYLPFFDLGFAWLLPATITIVLCLIGQKISKTTT
>NZ_CP014161.1|WP_060777635.1|174920_175916_+|D-2-hydroxyacid-dehydrogenase
MTKIIVYAVTAEEKPLVEAWASRHQVEVKLVTEELTVDTVDLAAGFDGVSTSQVPRIEEPIFSRLHDLGIKQIAQRSAGVDMYDLDQAKENGIIITNVPTYSPVSIAEYTLGTIIYLNRRLNNILPRTKAHNFSRSPEVRGRVLKDLTLAVIGAGHIGQELARIYAGLGGKVVAYDIAPDPAAEKYLSFVDSVEDAVAQADIVSLHMPLTKDNYHMFDADLLAQCKEGTILVNNGRGALVDTDALLAAIDSGHIASAALDTYEAEGPYVFKDWSDKTVEDERLKTLINHSKVLYTPHLAYYTDDAIKALVDGGLDSTLEVIETGDAKNRVN
>NZ_CP014161.1|WP_060777636.1|176071_177379_+|SWIM-zinc-finger-family-protein
MRLLGQEFPKKIYERGYRYYADDRVEDNYVKDQTYHFWVRGSEKYQVQLNLDPKEEVSKMTCDCPYADSGKACKHMAAAALYYQFGPYSEYAMSHHFPELDRLLSQLPRLSLLHYFKQVLLNHPQLVHDVYDSLLAREDEVADDELNVILDLFDEVDDIYYKHSQAGKIPIFKGFALIEDLTKYLNNNLNDILHHGQTLIALMLLNHVIEMVDQVEFEEEFGQAAIVINLCDQAYGSIVDYLSQEEREEGLAMLLALLNNHHSFWIDLLLPQVIGRHFDRFQERQRLLRACLYRMETLQEQFPDQDLEWYFEALFKLYQELEPSEKVVDFASRHIDYLASVDYLRRFALSYREDGGQIADKSEKYPVQILTGYLKQALVDLETAKNRSQYQRIATFLKNMDAIDGGQFVRHCFISQLEAHYPDRHALLEEFERSW
>NZ_CP014161.1|WP_060777637.1|177506_178352_+|exodeoxyribonuclease-III
MKFISWNIDSLNAALTSDSNRAQLSRQVLETIDQYDPDVIAIQETKLSAKGPTKKHQEALAEWFPDYNNAWVSSVEPARKSYAGNMVLYKNHLEPSISYPKIGAPDTMDSEGRIITLDFGPFYFTQVYTPNAGNGLKRLEERQVWDEKYAQYLSQLDQEKPLIATGDFNVAHKEIDLAHPENNHKSAGFTDEERSGFTKLLAHGFTDTFRHIHGDVEGVYSWWAQRVKTSKINNSGWRIDYFLVSDRIADAVEKSEMIDSGTRQDHTPIYLEISDEIRAGD

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Crispr_ID: NZ_CP014161_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014161_2

188070-188890

TypeI-E

I-C,I-E,II-B

Consensus_repeat	Method
CTTTTTCCCGCACATGCGGGGGTGATCC	CRISPRCasFinder
CTTTTTCCCGCACATGCGGGGGTGATCC	CRT

13 spacers

DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP014161_2

>merge|NZ_CP014161|2|188070-188890|CRISPRCasFinder,CRT
CTTTTTCCCGCACATGCGGGGGTGATCCTATATTTTTGATACCTATCTTGATTATGACTGGCTTTTTCCCGCACATGCGGGGGTGATCCCGAAATCTGGGAAAGTATCAAGACGTACTTTGCCTTTTTCCCGCACATGCGGGGGTGATCCTGGCATGACTATCGGAGGCGAGTCTATCTTTACCTTTTTCCCGCACATGCGGGGGTGATCCTAAAATAATCGTCCCACAAGTGGTGGACACATGCTTTTTCCCGCACATGCGGGGGTGATCCTGTGTCTAGTAATCCCATAATTTAATCTTCTCCCTTTTTCCCGCACATGCGGGGGTGATCCCAAGCTAACGTAGGGCTAACCTACAAGGTTGATCTTTTTCCCGCACATGCGGGGGTGATCCCGACAACTTGATCTCCAACTCAATGGGATCATACTTTTTCCCGCACATGCGGGGGTGATCCCCTAAGTTTTAAGCCATTCGAGGGCAAAATAAAACTTTTTCCCGCACATGCGGGGGTGATCCTTCTTGCTGCCTCGTTAACTTGTTTTTCTGCCGCTTTTTCCCGCACATGCGGGGGTGATCCTATACTTTTGGCAAAGACAAGATTAAAGCAGTACTTTTTCCCGCACATGCGGGGGTGATCCTGGTACGAATAACTCCATGATTATCCACCCGGGCTTTTTCCCGCACATGCGGGGGTGATCCCGCTGACCTGGAATGACTTCATCCCCGCACTAACTTTTTCCCGCACATGCGGGGGAATCCTGTTTGATCTAGCAACATCTTTGCCTAATCCAACTTTTTCCCGCACATGCGGGTGATTTTG

>NZ_CP014161|2|2|188070-188890|CRISPRCasFinder
CTTTTTCCCGCACATGCGGGGGTGATCC	TATATTTTTGATACCTATCTTGATTATGACTGG
CTTTTTCCCGCACATGCGGGGGTGATCC	CGAAATCTGGGAAAGTATCAAGACGTACTTTGC
CTTTTTCCCGCACATGCGGGGGTGATCC	TGGCATGACTATCGGAGGCGAGTCTATCTTTAC
CTTTTTCCCGCACATGCGGGGGTGATCC	TAAAATAATCGTCCCACAAGTGGTGGACACATG
CTTTTTCCCGCACATGCGGGGGTGATCC	TGTGTCTAGTAATCCCATAATTTAATCTTCTCC
CTTTTTCCCGCACATGCGGGGGTGATCC	CAAGCTAACGTAGGGCTAACCTACAAGGTTGAT
CTTTTTCCCGCACATGCGGGGGTGATCC	CGACAACTTGATCTCCAACTCAATGGGATCATA
CTTTTTCCCGCACATGCGGGGGTGATCC	CCTAAGTTTTAAGCCATTCGAGGGCAAAATAAAA
CTTTTTCCCGCACATGCGGGGGTGATCC	TTCTTGCTGCCTCGTTAACTTGTTTTTCTGCCG
CTTTTTCCCGCACATGCGGGGGTGATCC	TATACTTTTGGCAAAGACAAGATTAAAGCAGTA
CTTTTTCCCGCACATGCGGGGGTGATCC	TGGTACGAATAACTCCATGATTATCCACCCGGG
CTTTTTCCCGCACATGCGGGGGTGATCC	CGCTGACCTGGAATGACTTCATCCCCGCACTAA
CTTTTTCCCGCACATGCGGGGGAATCCT	GTTTGATCTAGCAACATCTTTGCCTAATCCAA
CTTTTTCCCGCACATGCGGGTGATTTTG

>NZ_CP014161|2|2|188070-188890|CRT
CTTTTTCCCGCACATGCGGGGGTGATCC	TATATTTTTGATACCTATCTTGATTATGACTGG
CTTTTTCCCGCACATGCGGGGGTGATCC	CGAAATCTGGGAAAGTATCAAGACGTACTTTGC
CTTTTTCCCGCACATGCGGGGGTGATCC	TGGCATGACTATCGGAGGCGAGTCTATCTTTAC
CTTTTTCCCGCACATGCGGGGGTGATCC	TAAAATAATCGTCCCACAAGTGGTGGACACATG
CTTTTTCCCGCACATGCGGGGGTGATCC	TGTGTCTAGTAATCCCATAATTTAATCTTCTCC
CTTTTTCCCGCACATGCGGGGGTGATCC	CAAGCTAACGTAGGGCTAACCTACAAGGTTGAT
CTTTTTCCCGCACATGCGGGGGTGATCC	CGACAACTTGATCTCCAACTCAATGGGATCATA
CTTTTTCCCGCACATGCGGGGGTGATCC	CCTAAGTTTTAAGCCATTCGAGGGCAAAATAAAA
CTTTTTCCCGCACATGCGGGGGTGATCC	TTCTTGCTGCCTCGTTAACTTGTTTTTCTGCCG
CTTTTTCCCGCACATGCGGGGGTGATCC	TATACTTTTGGCAAAGACAAGATTAAAGCAGTA
CTTTTTCCCGCACATGCGGGGGTGATCC	TGGTACGAATAACTCCATGATTATCCACCCGGG
CTTTTTCCCGCACATGCGGGGGTGATCC	CGCTGACCTGGAATGACTTCATCCCCGCACTAA
CTTTTTCCCGCACATGCGGGGGAATCCT	GTTTGATCTAGCAACATCTTTGCCTAATCCAA
CTTTTTCCCGCACATGCGGGTGATTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014161.1\|WP_060777647.1\|190558_190825_-\|DUF896-domain-containing-protein	unknown	unknown	gnl\|CDD\|368690
NZ_CP014161.1\|WP_060777642.1\|185543_186179_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP014161.1\|WP_060777649.1\|191690_192353_+\|ribosomal-protein-S18-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|223532
NZ_CP014161.1\|WP_060777641.1\|184830_185541_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187886
NZ_CP014161.1\|WP_060777652.1\|193838_194120_+\|DUF503-domain-containing-protein	unknown	unknown	gnl\|CDD\|377364
NZ_CP014161.1\|WP_060777646.1\|190074_190452_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NZ_CP014161.1\|WP_060777636.1\|176071_177379_+\|SWIM-zinc-finger-family-protein	unknown	unknown	gnl\|CDD\|227059
NZ_CP014161.1\|WP_156417355.1\|188983_189154_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014161.1\|WP_060777645.1\|189555_189999_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP014161.1\|WP_060777639.1\|181382_183113_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP014161.1\|WP_060777648.1\|190978_191710_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NZ_CP014161.1\|WP_060777643.1\|186183_187134_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP014161.1\|WP_060777638.1\|178624_181378_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP014161.1\|WP_060777653.1\|194185_196135_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP014161.1\|WP_060777640.1\|183706_184831_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP014161.1\|WP_076340196.1\|183105_183717_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP014161.1\|WP_076340197.1\|192297_192792_+\|ribosomal-protein-S18-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NZ_CP014161.1\|WP_060777644.1\|187134_188055_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
NZ_CP014161.1\|WP_060777637.1\|177506_178352_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197321
NZ_CP014161.1\|WP_060777651.1\|192736_193786_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585

Protein	Function_ID	Function_description	E-value
NZ_CP014161.1\|WP_060777647.1\|190558_190825_-\|DUF896-domain-containing-protein	gnl\|CDD\|368690	pfam05979, DUF896, Bacterial protein of unknown function (DUF896). In B. subtilis, one small SOS response operon under the control of LexA, the yneA operon, is comprised of three genes: yneA, yneB, and ynzC. This family consists of several short, hypothetical bacterial proteins of unknown function. These proteins are mainly found in gram-positive firmicutes. Structures show that the N-terminus is composed of two alpha helices forming a helix-loop-helix motif. The structure of ynzC from B. subtilis forms a trimeric complex. Structural modelling suggests this domain may bind nucleic acids. This family is also known as UPF0291.	2.77925e-28
NZ_CP014161.1\|WP_060777642.1\|185543_186179_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	6.00582e-66
NZ_CP014161.1\|WP_060777649.1\|191690_192353_+\|ribosomal-protein-S18-alanine-N-acetyltransferase	gnl\|CDD\|223532	COG0456, RimI, Acetyltransferases [General function prediction only].	1.6858e-21
NZ_CP014161.1\|WP_060777641.1\|184830_185541_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.17028e-45
NZ_CP014161.1\|WP_060777652.1\|193838_194120_+\|DUF503-domain-containing-protein	gnl\|CDD\|377364	pfam04456, DUF503, Protein of unknown function (DUF503). Family of hypothetical bacterial proteins.	1.3381e-20
NZ_CP014161.1\|WP_060777646.1\|190074_190452_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	1.06704e-09
NZ_CP014161.1\|WP_060777636.1\|176071_177379_+\|SWIM-zinc-finger-family-protein	gnl\|CDD\|227059	COG4715, COG4715, Uncharacterized conserved protein [Function unknown].	6.45832e-05
NZ_CP014161.1\|WP_060777645.1\|189555_189999_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.75077e-09
NZ_CP014161.1\|WP_060777639.1\|181382_183113_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	7.77155e-80
NZ_CP014161.1\|WP_060777648.1\|190978_191710_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	9.42621e-51
NZ_CP014161.1\|WP_060777643.1\|186183_187134_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	6.51507e-127
NZ_CP014161.1\|WP_060777638.1\|178624_181378_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.53488e-89
NZ_CP014161.1\|WP_060777653.1\|194185_196135_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NZ_CP014161.1\|WP_060777640.1\|183706_184831_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.64431e-156
NZ_CP014161.1\|WP_076340196.1\|183105_183717_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	6.98213e-35
NZ_CP014161.1\|WP_076340197.1\|192297_192792_+\|ribosomal-protein-S18-alanine-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	4.69178e-26
NZ_CP014161.1\|WP_060777644.1\|187134_188055_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	3.62868e-46
NZ_CP014161.1\|WP_060777637.1\|177506_178352_+\|exodeoxyribonuclease-III	gnl\|CDD\|197321	cd09087, Ape1-like_AP-endo, Human Ape1-like subfamily of the ExoIII family apurinic/apyrimidinic (AP) endonucleases. This subfamily includes human Ape1 (also known as Apex, Hap1, or Ref-1) and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Ape1 and Ape2 in humans. Ape1 is found in this subfamily, it exhibits strong AP-endonuclease activity but shows weak 3'-5' exonuclease and 3'-phosphodiesterase activities. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes exonuclease III (ExoIII) and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	1.12612e-113
NZ_CP014161.1\|WP_060777651.1\|192736_193786_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0

>NZ_CP014161.1|WP_060777644.1|187134_188055_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MPLTVITMRNCPPSLRGDLSKWMQEIATGVYVGNFNSRVREALWERVSQNVGVGEATMSYACRNEIGYQFETINAKRQVIDYEGIPLVLLPNTLEESKTNKKLGFSKVAKQRQAKKYSAYPKNNREEKEQSSYIIIDIETSGLDLLKDSIIEIAALTIKNGEIVKEFECLINYEGKLPLEITSLTGIDDQLLKKEGQKLENVLKEFKAFVGEVDLVGYNISFDIKFINYHLKKLNLPKLNNKSIDLMSFVKKEKLFLPNYKLESALTAYGINEEVPHRALADVHLIYGLALKVNKFLKFMNRQSRS
>NZ_CP014161.1|WP_060777643.1|186183_187134_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTKQSGAKKTNLTELPRIGDRVSFIYIEHAKINRIDSAITVVDSRGTVRIPAAMIGVLLLGPGTDISHRAVELIGDAGTSLVWVGEYGVRYYAHGRSLAHSTRFLEKQAKLVSNRRSRLAVARKMYQMRFPNEDVSSFTMQQLRGREGARVRKIYRQEAKRWQVEWTRRDYDPDHYEEGTPVNQALSAANVSLYGVVHSVITALGLSPGLGFVHTGHDKSFVYDIADLYKSEITIPIAFQIASEFNNDDEIGRIARLRVRDAMVDGKLMKRIVKDVQYLLEVNPDEELDIDVINLWDDRQGLVKYGINYQDYDGED
>NZ_CP014161.1|WP_060777642.1|185543_186179_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYMSRVAIDTNNPRKMKSLNHLGAYHNWVESSFPKEFVDQVRTRKLWRIDKVNGQEYLLIVSPNKPDQDALEKYGVNGSAQVADYSSFLDSLEEGMEAQFRVRLNPVVSKSQAGKKRGRVVPLYGDESQLNFLLDRDKKNGFEINPATLCIVEKGFEPVKKRNEATIRLSSATYEGVLKITDFEQFKQTLKEGFGRKKAYGFGLMTIIPMR
>NZ_CP014161.1|WP_060777641.1|184830_185541_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTLVLKFAGPLQAWGTNSHFETRHTDLYPSKSAVIGLISACLGYKRDDDEHIQSLNALDFAVRIDQQGNLLRDYHTAKKYKNNGKLDRTYVTNRYYLEDAIFLVAIGSENEDLINKIEAALKSPYYQPFMGRRALPLNADFIFQSTDKDVLTILKEIPWQASPWYKKNHSKRLSIYADAYLQTNQPSHQRRDRVHSFSQKGRKFSYRSECRIDIIVKDIGSFGDHDAFSVLKEVD
>NZ_CP014161.1|WP_060777640.1|183706_184831_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MKNNERIFVDIHAIQTVPPSNVNRDDTGSPKTAQYGGVRRARVSSQSWKRAMREYFYENSAQSNVGVRTLQIVRYLADKIHILDNTMDDESAMKLADETINKAGIKTAAPKGSKDKGHKQAKALFFLGDTQANELAQAAVDGVTDKKVLQNILRDNPAIDIALFGRMVADDPSLNEDASSQVAHAISTHAVRPEFDFYTAVDDLAPEDNAGAGMLGTVEYNSSTLYRYANVAVHELSRQLDDPKATLNTLKLFIESFTKSMPTGKINTFANQTLPQALLVTVRDDRPVNLVSAFEKPVKTQEGYVEQSIKQLFSEYHKVEKIMDLPLKTFYLVLDDQDIDCDEGKQEDGLTQLLNDFDEFVGPLIEKVQDQGDA
>NZ_CP014161.1|WP_076340196.1|183105_183717_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTETKEKQVSVYQVTARMLDDLNRNNGTATSKAYLARLRQSIGKPLSQTVDIWPLLFQYLPEEFLSKSGQTTSEQKAILTTLQLYALYHQGSSIGEARLNSQEKATNIGASLSYLRREKDQRVASDRRFNTLITATDFTELIYYLRQMVKLLKGKSQGQVVINYPRLAEDLYWYLRGYEENVRIRWAQSYYKNREEGVNSDEE
>NZ_CP014161.1|WP_060777639.1|181382_183113_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MAKFSLIDEPWIAVISKDSGENLLLSLRDVFEQAPSLNQLAGDSKTQDFAVLRLLLAILQTVYSRMNASGQPYDQVELADRYQQMTDVDEFDEDDYVENLEETWQSIWEEGEFTEAVNNYLTAWHDHFYLFDDQYPFFQVTQADIAGDKISKSKASSIQAKNINRTISESGNKIALFSPSYGENKEILKADQVARWLLTFQGYSGLSDKVIFGKEKYKASKGWLFDIGGLYLGGRNLFETLWLNTVLVHPREGYRLNRQKPCWEFSGSEIIDQYFSSDNCDNLAELYSNWSRAIYIDPMTDLNKPFAFEVVKLPEINHVDNFLEPMTVWRKNASGENKGRYTPRKHVVGQSLWRSFGLVLPSNSKKEEGEGESHRPEIITWFDYLDDITDSLLDNYPLTIYAVSMQDDGNATSWVPTDEIYDELKIDDQVAADLSSAGWIPRINDTVTETKEIIERTFRYFLMEIKDFRNMDGNHFIDQNIEELYFLIDLPFRDWLIEIKPEDAKDEKIIQWRQTLRKIVMDKINHIVKEAGPRDYKGKVYEAKDGQSYIKNIATAYNTVTYFINKKLSVREDRND
>NZ_CP014161.1|WP_060777638.1|178624_181378_+|CRISPR-associated-helicase/endonuclease-Cas3
MISALWGKKSEKIGQFYWLPLIQHLKDTYGVAGALWEHWMSPGQKEFIQMASHTNSDGAKKLYQYLAAIHDGGKASPAFQAMPNFSHHSEDLEKLLLEKLERAGFIGISKVQLSDRQKSHHSLAGQALLIDDQINKDIASIVGAHHGKPVDSNRDYKDQLKSYGNNYFQSDNPDAPIYQTWQRAQKNIFNWALNLSGYTQVDELPEISQAGQVLLAGALIMADWIASNEHYFPLIPIDHDSVSDFSQSRLEKGFTQWKKTDLWQPHGATDIDQFYEDRFKFSPRDMQQVFSETIEASDQPGIFILEAPMGLGKTEAALAGAEQLAFKTGRSGVYFGLPTQATSNGIFPRIKDWLERVEELNGDKASLRLAHGKAALNDDFAKLAHQVDPDGGEESTIITNEWFAGRKTTALDDFVVGTVDQFLLLALKQKHLMLRHLGFSKKVVIIDEVHSYDAYMSTYLYRALEWMGAYQVPVIILSATLPADKRLEMIQSYLKGRKKQVKRIDTPDQFNTTAYPLITYTDGDTVHQETHFDDKDIKYQTVKVHKLPVMEQMDILIELVEDLLQSGGVIGIIVNTVKRAQVIAKALSKQIGEDFVELLHSNFIATERAAKENHLLQQIGKDKKRPERKVIIGTQVIEQSLDIDFDVLISDLAPMDLLIQRVGRMHRHEINRPSKHHEPVLYVLGISESLEFEKGSESVYGGYLLARTQYFLPDILNIPNDISSLVQAVYSDKTMDLNHDIQAKYEEMVLKYESYLKSKKAKAKGYLLASPDHSGKKTLVGWLKSPSTEESEERAYAQVRDSQETIEVIALKKIGSGYGTFAEEVDLSERIDDPNVAKEIAKETLRLPYQLSYLYNDIIDKNINFLERYNLKYLSEWQEQSWLKGSLGIIFDENHEFVINDYKLMYDQKYGLICERM
>NZ_CP014161.1|WP_060777637.1|177506_178352_+|exodeoxyribonuclease-III
MKFISWNIDSLNAALTSDSNRAQLSRQVLETIDQYDPDVIAIQETKLSAKGPTKKHQEALAEWFPDYNNAWVSSVEPARKSYAGNMVLYKNHLEPSISYPKIGAPDTMDSEGRIITLDFGPFYFTQVYTPNAGNGLKRLEERQVWDEKYAQYLSQLDQEKPLIATGDFNVAHKEIDLAHPENNHKSAGFTDEERSGFTKLLAHGFTDTFRHIHGDVEGVYSWWAQRVKTSKINNSGWRIDYFLVSDRIADAVEKSEMIDSGTRQDHTPIYLEISDEIRAGD
>NZ_CP014161.1|WP_060777636.1|176071_177379_+|SWIM-zinc-finger-family-protein
MRLLGQEFPKKIYERGYRYYADDRVEDNYVKDQTYHFWVRGSEKYQVQLNLDPKEEVSKMTCDCPYADSGKACKHMAAAALYYQFGPYSEYAMSHHFPELDRLLSQLPRLSLLHYFKQVLLNHPQLVHDVYDSLLAREDEVADDELNVILDLFDEVDDIYYKHSQAGKIPIFKGFALIEDLTKYLNNNLNDILHHGQTLIALMLLNHVIEMVDQVEFEEEFGQAAIVINLCDQAYGSIVDYLSQEEREEGLAMLLALLNNHHSFWIDLLLPQVIGRHFDRFQERQRLLRACLYRMETLQEQFPDQDLEWYFEALFKLYQELEPSEKVVDFASRHIDYLASVDYLRRFALSYREDGGQIADKSEKYPVQILTGYLKQALVDLETAKNRSQYQRIATFLKNMDAIDGGQFVRHCFISQLEAHYPDRHALLEEFERSW
>NZ_CP014161.1|WP_156417355.1|188983_189154_-|hypothetical-protein
MNLIEKEEKLYKIIEDYIYFDFSDSKDKRRLSPSAPSEVVEAYKEFINLPKVEPIC
>NZ_CP014161.1|WP_060777645.1|189555_189999_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MKKSYPALFYFDKEFDGYFISFPDLNDGATQGESISDALYMASEYLGIVLGDALESNKKIPQPSNINDLSLVENYPYKEDINWQDDYDMEKSFISMVVTDVSEYLNLDELVDVTVSIPVWAESLAEGDGFDLSKLLTEAISNKHSNI
>NZ_CP014161.1|WP_060777646.1|190074_190452_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLVYPAIFEREDKYIIVKFPDIPAAMTQGEDLSQAYEKAVEVLGAALEDYDDYPEPSPIESVSEQFPDSDLALIGVDLVAYRRKYHSKTVRKTVTVPEWLNDLAIAKQINFSQTLTEALKEKLGV
>NZ_CP014161.1|WP_060777647.1|190558_190825_-|DUF896-domain-containing-protein
MTKIKGGLNMDELLKRINELAKKQKEDGLTAEEKEEQTQLRQEYLKIFRGNFKNIMMNTKVIDPEGTDITPEKLKKAQAEHHGKGQSK
>NZ_CP014161.1|WP_060777648.1|190978_191710_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MRTLAIDTSTVSMSIALIEDQTSKMEITTNTKIKHSKALLPLIKQLFTTVAWEVSDLDRVVVTRGPGSYTGLRIGVTTAKTLAWTLNIPLYSVTSLAAIAANAAEEDGIICPLINARRQTVFAMAYDSNGEEVEGLTMGHYRLADWLDQLKAACPDQSLYFISSDIDQFEELIKEHLGDQAKLLPAEKGVIHAPLLAKLELEEEDVATFLPEYAKLAEAEERWEEKHPEEAAANRGHYVERML
>NZ_CP014161.1|WP_060777649.1|191690_192353_+|ribosomal-protein-S18-alanine-N-acetyltransferase
MWKECFDRWLFQLGNKITQLFADEPGQALSQQIDLDKSTLTYGLDQELDLAISDSEWIDQMVALERAAYDGHQMWSKKDIYNDMLYHPSTFYLQAFKEKELLAFVGCRRDKESIHISNLAVLPSYQSLGIGSKLLDLVKHLAPDLERHAITLEVRLSNEGAQKFYLREGFKATGKMERYYRDNHEDALTLTWQDDAHQVAQEDEANHSLPPTRGQAHPQD
>NZ_CP014161.1|WP_076340197.1|192297_192792_+|ribosomal-protein-S18-alanine-N-acetyltransferase
MKQIIVYHRPEAKLIPRISQQALAFYQEAFEQMPHIALDWLERGLASPRLYLFLLLDEKQVVLAAATFQLLADEGELLHFAVSPHRRRQGLGALLLTQALVHLEEQGLARCFLEVRAHNIPAQALYESQCFKCIDQRKNYYQDNHEDAKVYLWERSTSDNNIGN
>NZ_CP014161.1|WP_060777651.1|192736_193786_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MQKFIYGRDRPVTTILGIESSCDETGAAIVIDGKEMKCNVVATQIKSHMRFGGVVPEIASRHHVEQITQVIDYAMKEADVTWPEIDAVAVTKGPGLVGSLLIGITAAKTLAFAHDKPLIGVNHMAGHIYANNISDQMVFPLLALVVSGGHTELVYMKEDGHYQKIGDTRDDAVGEAYDKVGRILGVPYPGGKRMDEMAQEGQAIYDYPRPMINEDNFDFSYSGLKSAVINHAHNAEQKGEELNPNDVAASFQAAAVEVLVTKTMRAIAAYPVKQLVVAGGVAANSSLRKELESHLAKEHPEVRLSYPPLSLCGDNGAMIAAAAYPQYQKGDFVGLDLDANPGLDLGDEN
>NZ_CP014161.1|WP_060777652.1|193838_194120_+|DUF503-domain-containing-protein
MVLIGLEVTFIIDQAYTLKDKRRIVKSMVERAQQREKVTAAEIADLDLVNQAVVAFGLVSNSYSKSRQRLLNYLEKIESWYPIEVIHTEWLEA
>NZ_CP014161.1|WP_060777653.1|194185_196135_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MIVLQGSKLMRRFGSDILFQDVQMTIQDNSRTALVGRNGTGKSTLLKMLAGIEEPDQGQVTRAKGKTIAYMDQHAAIENSQRTIYEEMRSVFKESIALIHHAEQAAQDLADAHDEASYQEALKRYDQLQEEVNQSNAYGYDSEIRMVLHGFQFPESDYDKPINQLSGGQRTRLALAKVLLEKRDILILDEPTNHLDIETLTWLEDYLPSYPGALLIVSHDRYFLDHVTNETYEMTGHSMEYYKGNYSFYLKEKAVRLESWQKAYDKQQKKIAKLEDYVARNLVRASTTKMAQSRRKQLEKMPKIEKPKQDEKSPHIQFLTDKASGNVVLTADHLGIGYDDHLLSYPIEMDIRKQQAIAVVGPNGVGKSTLLKTIIQEIPAIKGEIHYGANVTIGYYDQELAKLHSNKDVLHELWDDHPTINEENIRTILGSFLFSGQDVEKSVAMLSGGEKARLALAKLSFNHDNFLVLDEPTNHLDIDSKEILENALIAYDGTLLFVSHDRYFINRIATQVLEISPEGSTLYLGDYDYYLNKKAEQEARLEEENKENQASLTEEKSAPSQSAQAYQNRKERQKEERKLQRQSKKIEASIEGLDEEIAEIQEKMTDPDILQNYYELNQLDQSLKDTQAQQEELFKEWELVQSQLENFNQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014161_1	1.28\|168633\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168633-168665	33	MH622943	Myoviridae sp. isolate ctbc_4, complete genome	77022-77054	5	0.848
NZ_CP014161_1	1.32\|168876\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168876-168908	33	MH622943	Myoviridae sp. isolate ctbc_4, complete genome	77022-77054	5	0.848
NZ_CP014161_2	2.13\|188831\|32\|NZ_CP014161\|CRISPRCasFinder,CRT	188831-188862	32	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	148186-148217	6	0.812
NZ_CP014161_1	1.4\|167168\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	167168-167200	33	MH648903	Microviridae sp. isolate ctia008, complete genome	1960-1992	7	0.788
NZ_CP014161_1	1.14\|167778\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	167778-167810	33	MK448829	Streptococcus phage Javan7, complete genome	7067-7099	7	0.788
NZ_CP014161_1	1.14\|167778\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	167778-167810	33	MH853355	Streptococcus phage LF1, complete genome	35345-35377	7	0.788
NZ_CP014161_1	1.14\|167778\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	167778-167810	33	MK448970	Streptococcus phage Javan516, complete genome	10718-10750	7	0.788
NZ_CP014161_1	1.14\|167778\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	167778-167810	33	MK448953	Streptococcus phage Javan474, complete genome	9305-9337	7	0.788
NZ_CP014161_1	1.14\|167778\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	167778-167810	33	MK448945	Streptococcus phage Javan454, complete genome	9889-9921	7	0.788
NZ_CP014161_1	1.14\|167778\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	167778-167810	33	MK448941	Streptococcus phage Javan446, complete genome	10652-10684	7	0.788
NZ_CP014161_1	1.14\|167778\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	167778-167810	33	MH853358	Streptococcus phage LF4, complete genome	35345-35377	7	0.788
NZ_CP014161_1	1.14\|167778\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	167778-167810	33	MK448957	Streptococcus phage Javan484, complete genome	10285-10317	7	0.788
NZ_CP014161_2	2.13\|188831\|32\|NZ_CP014161\|CRISPRCasFinder,CRT	188831-188862	32	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	303265-303296	7	0.781
NZ_CP014161_1	1.19\|168083\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168083-168115	33	KX961629	Bacillus phage BJ4, complete genome	127902-127934	8	0.758
NZ_CP014161_1	1.19\|168083\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168083-168115	33	NC_031006	Bacillus phage DIGNKC, complete genome	128500-128532	8	0.758
NZ_CP014161_1	1.19\|168083\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168083-168115	33	MT584805	Bacillus phage Tomato, complete genome	131949-131981	8	0.758
NZ_CP014161_1	1.19\|168083\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168083-168115	33	MT584805	Bacillus phage Tomato, complete genome	132219-132251	8	0.758
NZ_CP014161_1	1.19\|168083\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168083-168115	33	NC_031024	Bacillus phage Belinda, complete genome	129947-129979	8	0.758
NZ_CP014161_1	1.19\|168083\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168083-168115	33	MG763894	Bacillus phage HonestAbe, complete genome	128941-128973	8	0.758
NZ_CP014161_1	1.19\|168083\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168083-168115	33	KJ489401	Bacillus phage Megatron, complete genome	128528-128560	8	0.758
NZ_CP014161_1	1.19\|168083\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168083-168115	33	KU847400	UNVERIFIED: Bacillus phage Crookii, complete genome	106889-106921	8	0.758
NZ_CP014161_1	1.24\|168389\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168389-168421	33	NC_014937	Bacillus thuringiensis CT43 plasmid pBMB0558, complete sequence	84390-84422	8	0.758
NZ_CP014161_1	1.24\|168389\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168389-168421	33	NZ_CP004875	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB95, complete sequence	66034-66066	8	0.758
NZ_CP014161_1	1.24\|168389\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168389-168421	33	NC_017202	Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT127, complete sequence	124911-124943	8	0.758
NZ_CP014161_1	1.24\|168389\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168389-168421	33	NZ_CP010580	Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB76, complete sequence	54386-54418	8	0.758
NZ_CP014161_1	1.24\|168389\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168389-168421	33	NZ_CP011357	Bacillus thuringiensis strain YC-10 plasmid pYC20, complete sequence	80203-80235	8	0.758
NZ_CP014161_1	1.24\|168389\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168389-168421	33	NZ_CP015155	Bacillus thuringiensis strain Bc601 plasmid pBTBC5, complete sequence	12299-12331	8	0.758
NZ_CP014161_1	1.24\|168389\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168389-168421	33	NZ_CP013058	Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-3, complete sequence	9134-9166	8	0.758
NZ_CP014161_1	1.24\|168389\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168389-168421	33	NZ_CP007614	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB95, complete sequence	13895-13927	8	0.758
NZ_CP014161_1	1.24\|168389\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168389-168421	33	NZ_CP004868	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB94, complete sequence	80101-80133	8	0.758
NZ_CP014161_1	1.24\|168389\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168389-168421	33	CP020756	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-17, complete sequence	77790-77822	8	0.758
NZ_CP014161_1	1.24\|168389\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168389-168421	33	NC_020393	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-107, complete sequence	100019-100051	8	0.758
NZ_CP014161_1	1.24\|168389\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168389-168421	33	NZ_CP021063	Bacillus thuringiensis strain ATCC 10792 plasmid poh2, complete sequence	60465-60497	8	0.758
NZ_CP014161_1	1.24\|168389\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168389-168421	33	NC_020239	Bacillus thuringiensis serovar kurstaki str. HD73 plasmid pHT77, complete sequence	74675-74707	8	0.758
NZ_CP014161_1	1.29\|168694\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168694-168726	33	AP014008	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C62A-MedDCM-OCT-S41-C20, * SEQUENCING IN PROGRESS *	10926-10958	8	0.758
NZ_CP014161_1	1.29\|168694\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168694-168726	33	NC_047711	Uncultured phage_MedDCM-OCT-S28-C10 DNA, complete genome, group G8, isolate: uvMED-CGR-C62A-MedDCM-OCT-S28-C10	13364-13396	8	0.758
NZ_CP014161_1	1.29\|168694\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168694-168726	33	AP013598	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23B-MedDCM-OCT-S30-C202, * SEQUENCING IN PROGRESS *	3766-3798	8	0.758
NZ_CP014161_1	1.29\|168694\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168694-168726	33	AP014009	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C62A-MedDCM-OCT-S45-C17, * SEQUENCING IN PROGRESS *	21315-21347	8	0.758
NZ_CP014161_1	1.29\|168694\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168694-168726	33	AP013551	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C23A-MedDCM-OCT-S43-C49, * SEQUENCING IN PROGRESS *, 2 ordered pieces	7918-7950	8	0.758
NZ_CP014161_1	1.33\|168937\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168937-168969	33	AP014008	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C62A-MedDCM-OCT-S41-C20, * SEQUENCING IN PROGRESS *	10926-10958	8	0.758
NZ_CP014161_1	1.33\|168937\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168937-168969	33	NC_047711	Uncultured phage_MedDCM-OCT-S28-C10 DNA, complete genome, group G8, isolate: uvMED-CGR-C62A-MedDCM-OCT-S28-C10	13364-13396	8	0.758
NZ_CP014161_1	1.33\|168937\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168937-168969	33	AP013598	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23B-MedDCM-OCT-S30-C202, * SEQUENCING IN PROGRESS *	3766-3798	8	0.758
NZ_CP014161_1	1.33\|168937\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168937-168969	33	AP014009	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C62A-MedDCM-OCT-S45-C17, * SEQUENCING IN PROGRESS *	21315-21347	8	0.758
NZ_CP014161_1	1.33\|168937\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168937-168969	33	AP013551	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C23A-MedDCM-OCT-S43-C49, * SEQUENCING IN PROGRESS *, 2 ordered pieces	7918-7950	8	0.758
NZ_CP014161_2	2.13\|188831\|32\|NZ_CP014161\|CRISPRCasFinder,CRT	188831-188862	32	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	223516-223547	8	0.75
NZ_CP014161_1	1.5\|167229\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	167229-167261	33	NZ_CP029200	Spiroplasma melliferum strain microbial plasmid psm1, complete sequence	12010-12042	9	0.727
NZ_CP014161_1	1.5\|167229\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	167229-167261	33	NZ_CP029200	Spiroplasma melliferum strain microbial plasmid psm1, complete sequence	34842-34874	9	0.727
NZ_CP014161_1	1.5\|167229\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	167229-167261	33	NZ_CP029201	Spiroplasma melliferum strain microbial plasmid psm2, complete sequence	272-304	9	0.727
NZ_CP014161_1	1.5\|167229\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	167229-167261	33	NZ_CP029201	Spiroplasma melliferum strain microbial plasmid psm2, complete sequence	14742-14774	9	0.727
NZ_CP014161_1	1.5\|167229\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	167229-167261	33	NZ_CP029201	Spiroplasma melliferum strain microbial plasmid psm2, complete sequence	29205-29237	9	0.727
NZ_CP014161_1	1.18\|168022\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168022-168054	33	MN694447	Marine virus AFVG_250M387, complete genome	18936-18968	9	0.727
NZ_CP014161_1	1.18\|168022\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168022-168054	33	KP836356	Marinitoga camini virus 2, complete genome	13935-13967	9	0.727
NZ_CP014161_1	1.29\|168694\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168694-168726	33	MN694471	Marine virus AFVG_250M232, complete genome	31135-31167	9	0.727
NZ_CP014161_1	1.33\|168937\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168937-168969	33	MN694471	Marine virus AFVG_250M232, complete genome	31135-31167	9	0.727
NZ_CP014161_1	1.35\|169058\|32\|NZ_CP014161\|CRISPRCasFinder,CRT	169058-169089	32	NZ_CP043502	Bacillus paralicheniformis strain A4-3 plasmid unnamed1, complete sequence	16008-16039	9	0.719
NZ_CP014161_2	2.1\|188098\|33\|NZ_CP014161\|CRISPRCasFinder,CRT	188098-188130	33	MG592501	Vibrio phage 1.127.O._10N.286.52.E12, partial genome	36886-36918	9	0.727
NZ_CP014161_2	2.1\|188098\|33\|NZ_CP014161\|CRISPRCasFinder,CRT	188098-188130	33	HQ632860	Vibrio phage jenny 12G5 genomic sequence	32814-32846	9	0.727
NZ_CP014161_2	2.5\|188342\|33\|NZ_CP014161\|CRISPRCasFinder,CRT	188342-188374	33	MK448898	Streptococcus phage Javan284, complete genome	2743-2775	9	0.727
NZ_CP014161_1	1.24\|168389\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168389-168421	33	NZ_MK715471	Arcobacter cryaerophilus strain M830MA plasmid pM830MA, complete sequence	80749-80781	10	0.697
NZ_CP014161_1	1.24\|168389\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168389-168421	33	NZ_CP019367	Borrelia turicatae 91E135 isolate Oz1 plasmid lpG29, complete sequence	26434-26466	10	0.697
NZ_CP014161_1	1.24\|168389\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168389-168421	33	NZ_CP009317	Bacillus cereus 03BB102 plasmid unnamed, complete sequence	114298-114330	10	0.697
NZ_CP014161_1	1.24\|168389\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168389-168421	33	NC_012473	Bacillus cereus 03BB102 plasmid p03BB102_179, complete sequence	22593-22625	10	0.697
NZ_CP014161_2	2.1\|188098\|33\|NZ_CP014161\|CRISPRCasFinder,CRT	188098-188130	33	NZ_CP035938	Acinetobacter cumulans strain WCHAc060092 plasmid p3_060092, complete sequence	7292-7324	10	0.697
NZ_CP014161_1	1.24\|168389\|33\|NZ_CP014161\|PILER-CR,CRISPRCasFinder,CRT	168389-168421	33	NZ_MG973074	Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence	70305-70337	11	0.667

1. spacer 1.28|168633|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 5, identity: 0.848

atcgagcagatattactagtcagattaaaaata	CRISPR spacer
aaggagcagatattactaggcatattaaaaaaa	Protospacer
*  **************** ** ******** *

2. spacer 1.32|168876|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 5, identity: 0.848

atcgagcagatattactagtcagattaaaaata	CRISPR spacer
aaggagcagatattactaggcatattaaaaaaa	Protospacer
*  **************** ** ******** *

3. spacer 2.13|188831|32|NZ_CP014161|CRISPRCasFinder,CRT matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 6, identity: 0.812

gtttgatctagcaacatctttgcctaatccaa--	CRISPR spacer
atttgatatagcaacatctttgcct--ttcagta	Protospacer
.****** *****************  *.**.

4. spacer 1.4|167168|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to MH648903 (Microviridae sp. isolate ctia008, complete genome) position: , mismatch: 7, identity: 0.788

tcaaacacgatcaagctaataaatgttttcatg	CRISPR spacer
ttatgcaaaatcaagctaataaattatttcatg	Protospacer
*.* .** .***************  *******

5. spacer 1.14|167778|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to MK448829 (Streptococcus phage Javan7, complete genome) position: , mismatch: 7, identity: 0.788

caaagaattaggaggataaaaacatgccagaaa	CRISPR spacer
aaagaaattaagaggataaaaacatggcaggat	Protospacer
 **..*****.*************** ***.*

6. spacer 1.14|167778|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to MH853355 (Streptococcus phage LF1, complete genome) position: , mismatch: 7, identity: 0.788

caaagaattaggaggataaaaacatgccagaaa	CRISPR spacer
aaagaaattaagaggataaaaacatggcaggat	Protospacer
 **..*****.*************** ***.*

7. spacer 1.14|167778|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to MK448970 (Streptococcus phage Javan516, complete genome) position: , mismatch: 7, identity: 0.788

caaagaattaggaggataaaaacatgccagaaa	CRISPR spacer
aaagaaattaagaggataaaaacatggcaggat	Protospacer
 **..*****.*************** ***.*

8. spacer 1.14|167778|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 7, identity: 0.788

caaagaattaggaggataaaaacatgccagaaa	CRISPR spacer
aaagaaattaagaggataaaaacatggcaggat	Protospacer
 **..*****.*************** ***.*

9. spacer 1.14|167778|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to MK448945 (Streptococcus phage Javan454, complete genome) position: , mismatch: 7, identity: 0.788

caaagaattaggaggataaaaacatgccagaaa	CRISPR spacer
aaagaaattaagaggataaaaacatggcaggat	Protospacer
 **..*****.*************** ***.*

10. spacer 1.14|167778|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to MK448941 (Streptococcus phage Javan446, complete genome) position: , mismatch: 7, identity: 0.788

caaagaattaggaggataaaaacatgccagaaa	CRISPR spacer
aaagaaattaagaggataaaaacatggcaggat	Protospacer
 **..*****.*************** ***.*

11. spacer 1.14|167778|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to MH853358 (Streptococcus phage LF4, complete genome) position: , mismatch: 7, identity: 0.788

caaagaattaggaggataaaaacatgccagaaa	CRISPR spacer
aaagaaattaagaggataaaaacatggcaggat	Protospacer
 **..*****.*************** ***.*

12. spacer 1.14|167778|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to MK448957 (Streptococcus phage Javan484, complete genome) position: , mismatch: 7, identity: 0.788

caaagaattaggaggataaaaacatgccagaaa	CRISPR spacer
aaagaaattaagaggataaaaacatggcaggat	Protospacer
 **..*****.*************** ***.*

13. spacer 2.13|188831|32|NZ_CP014161|CRISPRCasFinder,CRT matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 7, identity: 0.781

gtttgatctagcaacatctttgcctaatccaa	CRISPR spacer
atttgatatagcaacatctttccctttccaaa	Protospacer
.****** ************* ***  .* **

14. spacer 1.19|168083|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to KX961629 (Bacillus phage BJ4, complete genome) position: , mismatch: 8, identity: 0.758

cgtgttaagataaaagtaagttaagggaaagca	CRISPR spacer
tatgttaagatataagtaagttaaggaggaggt	Protospacer
..********** *************...**

15. spacer 1.19|168083|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NC_031006 (Bacillus phage DIGNKC, complete genome) position: , mismatch: 8, identity: 0.758

cgtgttaagataaaagtaagttaagggaaagca	CRISPR spacer
tatgttaagatataagtaagttaaggaggagat	Protospacer
..********** *************...**

16. spacer 1.19|168083|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to MT584805 (Bacillus phage Tomato, complete genome) position: , mismatch: 8, identity: 0.758

cgtgttaagataaaagtaagttaagggaaagca	CRISPR spacer
tatgttaagatataagtaagttaaggaggagat	Protospacer
..********** *************...**

17. spacer 1.19|168083|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to MT584805 (Bacillus phage Tomato, complete genome) position: , mismatch: 8, identity: 0.758

cgtgttaagataaaagtaagttaagggaaagca	CRISPR spacer
tatgttaagatataagtaagttaaggaggagat	Protospacer
..********** *************...**

18. spacer 1.19|168083|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NC_031024 (Bacillus phage Belinda, complete genome) position: , mismatch: 8, identity: 0.758

cgtgttaagataaaagtaagttaagggaaagca	CRISPR spacer
tatgttaagatataagtaagttaaggaggagat	Protospacer
..********** *************...**

19. spacer 1.19|168083|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to MG763894 (Bacillus phage HonestAbe, complete genome) position: , mismatch: 8, identity: 0.758

cgtgttaagataaaagtaagttaagggaaagca	CRISPR spacer
tatgttaagatataagtaagttaaggaggagat	Protospacer
..********** *************...**

20. spacer 1.19|168083|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to KJ489401 (Bacillus phage Megatron, complete genome) position: , mismatch: 8, identity: 0.758

cgtgttaagataaaagtaagttaagggaaagca	CRISPR spacer
tatgttaagataagagtaagttaaggaggagat	Protospacer
..***********.************...**

21. spacer 1.19|168083|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to KU847400 (UNVERIFIED: Bacillus phage Crookii, complete genome) position: , mismatch: 8, identity: 0.758

cgtgttaagataaaagtaagttaagggaaagca	CRISPR spacer
tatgttaagatataagtaagttaaggaggagat	Protospacer
..********** *************...**

22. spacer 1.24|168389|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NC_014937 (Bacillus thuringiensis CT43 plasmid pBMB0558, complete sequence) position: , mismatch: 8, identity: 0.758

ccaattggtctatgtttaatttcatttcaattt	CRISPR spacer
ctacttgatctatgtttaaattcatttctaaca	Protospacer
*.* ***.*********** ******** * .

23. spacer 1.24|168389|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP004875 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB95, complete sequence) position: , mismatch: 8, identity: 0.758

ccaattggtctatgtttaatttcatttcaattt	CRISPR spacer
ctacttgatctatgtttaaattcatttctaaca	Protospacer
*.* ***.*********** ******** * .

24. spacer 1.24|168389|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NC_017202 (Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT127, complete sequence) position: , mismatch: 8, identity: 0.758

ccaattggtctatgtttaatttcatttcaattt	CRISPR spacer
ctacttgatctatgtttaaattcatttctaaca	Protospacer
*.* ***.*********** ******** * .

25. spacer 1.24|168389|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010580 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB76, complete sequence) position: , mismatch: 8, identity: 0.758

ccaattggtctatgtttaatttcatttcaattt	CRISPR spacer
ctacttgatctatgtttaaattcatttctaaca	Protospacer
*.* ***.*********** ******** * .

26. spacer 1.24|168389|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011357 (Bacillus thuringiensis strain YC-10 plasmid pYC20, complete sequence) position: , mismatch: 8, identity: 0.758

ccaattggtctatgtttaatttcatttcaattt	CRISPR spacer
ctacttgatctatgtttaaattcatttctaaca	Protospacer
*.* ***.*********** ******** * .

27. spacer 1.24|168389|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015155 (Bacillus thuringiensis strain Bc601 plasmid pBTBC5, complete sequence) position: , mismatch: 8, identity: 0.758

ccaattggtctatgtttaatttcatttcaattt	CRISPR spacer
ctacttgatctatgtttaaattcatttctaaca	Protospacer
*.* ***.*********** ******** * .

28. spacer 1.24|168389|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013058 (Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-3, complete sequence) position: , mismatch: 8, identity: 0.758

ccaattggtctatgtttaatttcatttcaattt	CRISPR spacer
ctacttgatctatgtttaaattcatttctaaca	Protospacer
*.* ***.*********** ******** * .

29. spacer 1.24|168389|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007614 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB95, complete sequence) position: , mismatch: 8, identity: 0.758

ccaattggtctatgtttaatttcatttcaattt	CRISPR spacer
ctacttgatctatgtttaaattcatttctaaca	Protospacer
*.* ***.*********** ******** * .

30. spacer 1.24|168389|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP004868 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB94, complete sequence) position: , mismatch: 8, identity: 0.758

ccaattggtctatgtttaatttcatttcaattt	CRISPR spacer
ctacttgatctatgtttaaattcatttctaaca	Protospacer
*.* ***.*********** ******** * .

31. spacer 1.24|168389|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to CP020756 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-17, complete sequence) position: , mismatch: 8, identity: 0.758

ccaattggtctatgtttaatttcatttcaattt	CRISPR spacer
ctacttgatctatgtttaaattcatttctaaca	Protospacer
*.* ***.*********** ******** * .

32. spacer 1.24|168389|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NC_020393 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-107, complete sequence) position: , mismatch: 8, identity: 0.758

ccaattggtctatgtttaatttcatttcaattt	CRISPR spacer
ctacttgatctatgtttaaattcatttctaaca	Protospacer
*.* ***.*********** ******** * .

33. spacer 1.24|168389|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021063 (Bacillus thuringiensis strain ATCC 10792 plasmid poh2, complete sequence) position: , mismatch: 8, identity: 0.758

ccaattggtctatgtttaatttcatttcaattt	CRISPR spacer
ctacttgatctatgtttaaattcatttctaaca	Protospacer
*.* ***.*********** ******** * .

34. spacer 1.24|168389|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NC_020239 (Bacillus thuringiensis serovar kurstaki str. HD73 plasmid pHT77, complete sequence) position: , mismatch: 8, identity: 0.758

ccaattggtctatgtttaatttcatttcaattt	CRISPR spacer
ctacttgatctatgtttaaattcatttctaaca	Protospacer
*.* ***.*********** ******** * .

35. spacer 1.29|168694|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to AP014008 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C62A-MedDCM-OCT-S41-C20, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.758

actatcaagtgattcttttaaatctccttgata	CRISPR spacer
tgtatcaggtgattgttttaaatctccattaac	Protospacer
  *****.****** ************ * *

36. spacer 1.29|168694|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NC_047711 (Uncultured phage_MedDCM-OCT-S28-C10 DNA, complete genome, group G8, isolate: uvMED-CGR-C62A-MedDCM-OCT-S28-C10) position: , mismatch: 8, identity: 0.758

actatcaagtgattcttttaaatctccttgata	CRISPR spacer
tgtatcaggtgattgttttaaatctccattaac	Protospacer
  *****.****** ************ * *

37. spacer 1.29|168694|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to AP013598 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23B-MedDCM-OCT-S30-C202, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.758

actatcaagtgattcttttaaatctccttgata	CRISPR spacer
tgtatcaagtgattgttttaaatttccattaac	Protospacer
  ************ ********.*** * *

38. spacer 1.29|168694|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to AP014009 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C62A-MedDCM-OCT-S45-C17, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.758

actatcaagtgattcttttaaatctccttgata	CRISPR spacer
tgtatcaggtgattgttttaaatctccattaac	Protospacer
  *****.****** ************ * *

39. spacer 1.29|168694|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to AP013551 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C23A-MedDCM-OCT-S43-C49, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 8, identity: 0.758

actatcaagtgattcttttaaatctccttgata	CRISPR spacer
tgtatcaagtgattgttttaaatttccattaac	Protospacer
  ************ ********.*** * *

40. spacer 1.33|168937|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to AP014008 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C62A-MedDCM-OCT-S41-C20, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.758

actatcaagtgattcttttaaatctccttgata	CRISPR spacer
tgtatcaggtgattgttttaaatctccattaac	Protospacer
  *****.****** ************ * *

41. spacer 1.33|168937|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NC_047711 (Uncultured phage_MedDCM-OCT-S28-C10 DNA, complete genome, group G8, isolate: uvMED-CGR-C62A-MedDCM-OCT-S28-C10) position: , mismatch: 8, identity: 0.758

actatcaagtgattcttttaaatctccttgata	CRISPR spacer
tgtatcaggtgattgttttaaatctccattaac	Protospacer
  *****.****** ************ * *

42. spacer 1.33|168937|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to AP013598 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23B-MedDCM-OCT-S30-C202, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.758

actatcaagtgattcttttaaatctccttgata	CRISPR spacer
tgtatcaagtgattgttttaaatttccattaac	Protospacer
  ************ ********.*** * *

43. spacer 1.33|168937|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to AP014009 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C62A-MedDCM-OCT-S45-C17, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.758

actatcaagtgattcttttaaatctccttgata	CRISPR spacer
tgtatcaggtgattgttttaaatctccattaac	Protospacer
  *****.****** ************ * *

44. spacer 1.33|168937|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to AP013551 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C23A-MedDCM-OCT-S43-C49, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 8, identity: 0.758

actatcaagtgattcttttaaatctccttgata	CRISPR spacer
tgtatcaagtgattgttttaaatttccattaac	Protospacer
  ************ ********.*** * *

45. spacer 2.13|188831|32|NZ_CP014161|CRISPRCasFinder,CRT matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 8, identity: 0.75

gtttgatctagcaacatctttgcctaatccaa	CRISPR spacer
atttgatgtagcaacatctttccctttccaca	Protospacer
.****** ************* ***  .*  *

46. spacer 1.5|167229|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029200 (Spiroplasma melliferum strain microbial plasmid psm1, complete sequence) position: , mismatch: 9, identity: 0.727

tagttacatttctaacaccaccagcaaacactt	CRISPR spacer
catcattctttttaacaccaacagcaaacactt	Protospacer
.* .  . ***.******** ************

47. spacer 1.5|167229|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029200 (Spiroplasma melliferum strain microbial plasmid psm1, complete sequence) position: , mismatch: 9, identity: 0.727

tagttacatttctaacaccaccagcaaacactt	CRISPR spacer
catcattctttttaacaccaacagcaaacactt	Protospacer
.* .  . ***.******** ************

48. spacer 1.5|167229|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029201 (Spiroplasma melliferum strain microbial plasmid psm2, complete sequence) position: , mismatch: 9, identity: 0.727

tagttacatttctaacaccaccagcaaacactt	CRISPR spacer
catcattctttttaacaccaacagcaaacactt	Protospacer
.* .  . ***.******** ************

49. spacer 1.5|167229|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029201 (Spiroplasma melliferum strain microbial plasmid psm2, complete sequence) position: , mismatch: 9, identity: 0.727

tagttacatttctaacaccaccagcaaacactt	CRISPR spacer
catcattctttttaacaccaacagcaaacactt	Protospacer
.* .  . ***.******** ************

50. spacer 1.5|167229|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029201 (Spiroplasma melliferum strain microbial plasmid psm2, complete sequence) position: , mismatch: 9, identity: 0.727

tagttacatttctaacaccaccagcaaacactt	CRISPR spacer
catcattctttttaacaccaacagcaaacactt	Protospacer
.* .  . ***.******** ************

51. spacer 1.18|168022|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to MN694447 (Marine virus AFVG_250M387, complete genome) position: , mismatch: 9, identity: 0.727

caaaataagaagtttgagaaaacaaagaggttg	CRISPR spacer
aaaaataagaagattaagaaaacaaaaattaga	Protospacer
 *********** **.**********.*    .

52. spacer 1.18|168022|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to KP836356 (Marinitoga camini virus 2, complete genome) position: , mismatch: 9, identity: 0.727

caaaataagaagtttgagaaaacaaagaggttg	CRISPR spacer
ttcactaagaagttggaaaaaacaaagagggaa	Protospacer
.  * ********* **.************  .

53. spacer 1.29|168694|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to MN694471 (Marine virus AFVG_250M232, complete genome) position: , mismatch: 9, identity: 0.727

actatcaagtgattcttttaaatctccttgata	CRISPR spacer
ttttttccatgattcttttaaatctttttgata	Protospacer
 .* *.  .****************..******

54. spacer 1.33|168937|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to MN694471 (Marine virus AFVG_250M232, complete genome) position: , mismatch: 9, identity: 0.727

actatcaagtgattcttttaaatctccttgata	CRISPR spacer
ttttttccatgattcttttaaatctttttgata	Protospacer
 .* *.  .****************..******

55. spacer 1.35|169058|32|NZ_CP014161|CRISPRCasFinder,CRT matches to NZ_CP043502 (Bacillus paralicheniformis strain A4-3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cagtggaataagtcattctgtcaccagctaaa	CRISPR spacer
ttttatatgaagtcattctgtcagcatctaaa	Protospacer
.  *. *  ************** ** *****

56. spacer 2.1|188098|33|NZ_CP014161|CRISPRCasFinder,CRT matches to MG592501 (Vibrio phage 1.127.O._10N.286.52.E12, partial genome) position: , mismatch: 9, identity: 0.727

tatatttttgatacctatcttgattatgactgg	CRISPR spacer
gacattgttgatacctatcttgtttataaggtt	Protospacer
 *.*** *************** ****.*

57. spacer 2.1|188098|33|NZ_CP014161|CRISPRCasFinder,CRT matches to HQ632860 (Vibrio phage jenny 12G5 genomic sequence) position: , mismatch: 9, identity: 0.727

tatatttttgatacctatcttgattatgactgg	CRISPR spacer
aacattttcgattcctatcttgattattaggtt	Protospacer
 *.*****.*** ************** *

58. spacer 2.5|188342|33|NZ_CP014161|CRISPRCasFinder,CRT matches to MK448898 (Streptococcus phage Javan284, complete genome) position: , mismatch: 9, identity: 0.727

tgtgtctagtaatcccataatttaatcttctcc	CRISPR spacer
aaggctaagtaatcccatattttaatcctctct	Protospacer
 . *.. ************ *******.****.

59. spacer 1.24|168389|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK715471 (Arcobacter cryaerophilus strain M830MA plasmid pM830MA, complete sequence) position: , mismatch: 10, identity: 0.697

ccaattggtctatgtttaatttcatttcaattt	CRISPR spacer
ccacttggtctatgtttaaattcatcaaggcca	Protospacer
*** *************** *****.  ....

60. spacer 1.24|168389|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019367 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpG29, complete sequence) position: , mismatch: 10, identity: 0.697

ccaattggtctatgtttaatttcatttcaattt	CRISPR spacer
aaaattggtttatttttaatttcattaacgagt	Protospacer
  *******.*** ************   .  *

61. spacer 1.24|168389|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009317 (Bacillus cereus 03BB102 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.697

ccaattggtctatgtttaatttcatttcaattt	CRISPR spacer
tttgtatgtctatgttcaattttatttcaatag	Protospacer
.. .*  *********.*****.********

62. spacer 1.24|168389|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NC_012473 (Bacillus cereus 03BB102 plasmid p03BB102_179, complete sequence) position: , mismatch: 10, identity: 0.697

ccaattggtctatgtttaatttcatttcaattt	CRISPR spacer
tttgtatgtctatgttcaattttatttcaatag	Protospacer
.. .*  *********.*****.********

63. spacer 2.1|188098|33|NZ_CP014161|CRISPRCasFinder,CRT matches to NZ_CP035938 (Acinetobacter cumulans strain WCHAc060092 plasmid p3_060092, complete sequence) position: , mismatch: 10, identity: 0.697

tatatttttgatacctatcttgattatgactgg	CRISPR spacer
gtaattttttaaacctatcttgattatccttac	Protospacer
   ****** * ***************  .*.

64. spacer 1.24|168389|33|NZ_CP014161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 11, identity: 0.667

ccaattggtctatgtttaatttcatttcaattt	CRISPR spacer
tggtaaagtctatgttaaaattcatttcaatgg	Protospacer
. .   .********* ** ***********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1087521 : 1100279

Prochlorococcus_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060778358.1\|1087521_1088826_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	4.1e-20	33.0
WP_060778359.1\|1088829_1090110_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_060778360.1\|1090126_1091680_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	2.0e-66	44.2
WP_060778361.1\|1091660_1092251_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.0e-23	34.8
WP_060778362.1\|1092250_1093303_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	6.4e-64	42.3
WP_060779072.1\|1093295_1094747_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	5.9e-52	33.7
WP_060778363.1\|1094773_1097008_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.5e-139	38.8
WP_060778364.1\|1097004_1097688_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_060778365.1\|1097693_1097939_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_060778366.1\|1097972_1098692_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SPE1	Cyanophage	2.9e-44	43.0
WP_060785035.1\|1098691_1099831_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_060779073.1\|1099814_1100279_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.2e-19	44.4

DBSCAN-SWA_2

1675084 : 1685646

Streptococcus_phage(62.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060778790.1\|1675084_1676272_-	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	3.2e-88	47.2
WP_060778791.1\|1676275_1676914_-	VanZ family protein	NA	NA	NA	NA
WP_060778792.1\|1677105_1678617_-	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	4.8e-20	30.0
WP_060778793.1\|1678619_1679336_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.2e-31	34.3
WP_060778794.1\|1679487_1679889_+	single-stranded DNA-binding protein	A0A0K0MWE1	Streptococcus_phage	6.9e-11	33.6
WP_060778795.1\|1680148_1680625_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_060778796.1\|1680798_1681722_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	1.6e-47	38.3
WP_060778797.1\|1681750_1682755_-	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	1.1e-81	49.1
WP_060778798.1\|1682751_1683648_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.4e-06	26.9
WP_060778799.1\|1683924_1685646_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	2.4e-169	52.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014161

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection