CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013861	Pseudomonas fragi strain P121 chromosome, complete genome	4 crisprs	csa3,cas3,DEDDh,DinG,WYL	1	1	5	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013861_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013861_1

1036828-1036920

Orphan

Consensus_repeat	Method
TGTAGGAGCGAGCTTGCCTCGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013861_1

>merge|NZ_CP013861|1|1036828-1036920|CRISPRCasFinder
TGTAGGAGCGAGCTTGCCTCGCGACAGGCTCAACGCAGATTCATGGAGGGACCGCGTAGCCTGCATCGCTGTAGGAGCGAGCTTGCTCGCGAG

>NZ_CP013861|1|1|1036828-1036920|CRISPRCasFinder
TGTAGGAGCGAGCTTGCCTCGCGA	CAGGCTCAACGCAGATTCATGGAGGGACCGCGTAGCCTGCATCGC
TGTAGGAGCGAGCTTGCTCGCGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013861.1\|WP_010655634.1\|1025464_1025650_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013861.1\|WP_003443292.1\|1033351_1034380_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|224208
NZ_CP013861.1\|WP_003443281.1\|1039747_1040140_-\|protease-inhibitor-I42-family-protein	unknown	unknown	gnl\|CDD\|378179
NZ_CP013861.1\|WP_010655639.1\|1031190_1032066_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176129
NZ_CP013861.1\|WP_010655646.1\|1050672_1051326_+\|Pr6Pr-family-membrane-protein	unknown	unknown	unknown
NZ_CP013861.1\|WP_003443285.1\|1037934_1038678_-\|carboxy-S-adenosyl-L-methionine-synthase-CmoA	unknown	unknown	gnl\|CDD\|273244
NZ_CP013861.1\|WP_167542001.1\|1045553_1046936_-\|porin	unknown	unknown	gnl\|CDD\|226185
NZ_CP013861.1\|WP_010655637.1\|1027088_1028549_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013861.1\|WP_010655633.1\|1024078_1025263_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|214947
NZ_CP013861.1\|WP_003443290.1\|1034948_1036325_+\|multicopper-oxidase-family-protein	unknown	unknown	gnl\|CDD\|225043
NZ_CP013861.1\|WP_010655645.1\|1048161_1050198_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP013861.1\|WP_082711665.1\|1038791_1039133_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377946
NZ_CP013861.1\|WP_003443288.1\|1036324_1036813_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP013861.1\|WP_003443295.1\|1032198_1033338_+\|FMN-dependent-L-lactate-dehydrogenase-LldD	unknown	unknown	gnl\|CDD\|183033
NZ_CP013861.1\|WP_003443279.1\|1040376_1042806_-\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
NZ_CP013861.1\|WP_010655638.1\|1028545_1030144_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013861.1\|WP_010655640.1\|1036981_1037938_-\|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	unknown	unknown	gnl\|CDD\|237898
NZ_CP013861.1\|WP_003443274.1\|1050419_1050650_+\|DUF2132-domain-containing-protein	unknown	unknown	gnl\|CDD\|378300
NZ_CP013861.1\|WP_010655644.1\|1043005_1045423_-\|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase	unknown	unknown	gnl\|CDD\|274418
NZ_CP013861.1\|WP_010655636.1\|1026275_1026587_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013861.1\|WP_003443292.1\|1033351_1034380_+\|FUSC-family-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	9.89855e-14
NZ_CP013861.1\|WP_003443281.1\|1039747_1040140_-\|protease-inhibitor-I42-family-protein	gnl\|CDD\|378179	pfam09394, Inhibitor_I42, Chagasin family peptidase inhibitor I42. Chagasin is a cysteine peptidase inhibitor which forms a beta barrel structure.	3.79344e-27
NZ_CP013861.1\|WP_010655639.1\|1031190_1032066_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176129	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold. This CD includes the substrate binding domain of CidR which positively up-regulates the expression of cidABC operon in the presence of acetic acid produced by the metabolism of excess glucose. The CidR affects the control of murein hydrolase activity by enhancing cidABC expression in the presence of acetic acid. Thus, up-regulation of cidABC expression results in increased murein hydrolase activity. This substrate binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.28255e-90
NZ_CP013861.1\|WP_003443285.1\|1037934_1038678_-\|carboxy-S-adenosyl-L-methionine-synthase-CmoA	gnl\|CDD\|273244	TIGR00740, tRNA_cmo5U34-methyltransferase, tRNA (cmo5U34)-methyltransferase. This tRNA methyltransferase is involved, together with cmoB, in preparing the uridine-5-oxyacetic acid (cmo5U) at position 34. [Unknown function, Enzymes of unknown specificity].	2.05776e-102
NZ_CP013861.1\|WP_167542001.1\|1045553_1046936_-\|porin	gnl\|CDD\|226185	COG3659, OprB, Carbohydrate-selective porin [Cell envelope biogenesis, outer membrane].	4.52671e-148
NZ_CP013861.1\|WP_010655645.1\|1048161_1050198_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	8.22573e-55
NZ_CP013861.1\|WP_010655633.1\|1024078_1025263_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|214947	smart00974, T5orf172, This entry represents the putative helicase A859L.	5.81328e-13
NZ_CP013861.1\|WP_003443290.1\|1034948_1036325_+\|multicopper-oxidase-family-protein	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	3.62789e-95
NZ_CP013861.1\|WP_082711665.1\|1038791_1039133_-\|hypothetical-protein	gnl\|CDD\|377946	pfam07947, YhhN, YhhN family. The members of this family are similar to the hypothetical protein yhhN expressed by E. coli. Many are annotated as possible transmembrane proteins, and in fact they all have a high proportion of hydrophobic residues. A human member of this family, formerly known as TMEM86B, is a lysoplasmalogenase that catalyzes the hydrolysis of the vinyl ether bond of lysoplasmalogen. Putative conserved active site residues have been proposed for the YhhN family.	8.32651e-16
NZ_CP013861.1\|WP_003443288.1\|1036324_1036813_+\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	3.61546e-62
NZ_CP013861.1\|WP_003443295.1\|1032198_1033338_+\|FMN-dependent-L-lactate-dehydrogenase-LldD	gnl\|CDD\|183033	PRK11197, lldD, L-lactate dehydrogenase; Provisional.	0
NZ_CP013861.1\|WP_003443279.1\|1040376_1042806_-\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP013861.1\|WP_010655640.1\|1036981_1037938_-\|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	gnl\|CDD\|237898	PRK15068, PRK15068, tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB.	0
NZ_CP013861.1\|WP_010655644.1\|1043005_1045423_-\|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase	gnl\|CDD\|274418	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.	0
NZ_CP013861.1\|WP_003443274.1\|1050419_1050650_+\|DUF2132-domain-containing-protein	gnl\|CDD\|378300	pfam09905, VF530, DNA-binding protein VF530. VF530 contains a unique four-helix motif that shows some similarity to the C-terminal double-stranded DNA (dsDNA) binding domain of RecA, as well as other nucleic acid binding domains.	8.80719e-45

>NZ_CP013861.1|WP_003443288.1|1036324_1036813_+|nucleoside-deaminase
MRQGRQPQIIDRSRDQDYMREALALAAQGAALGEVPVGAVLVQNGEIIGRGFNCPISGSDPSAHAEMVAIRAAAAAASNYRLPGSTLYVTLEPCSMCAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQGFLNHRVLFEGGVLAEECGAILSEFFKARRAK
>NZ_CP013861.1|WP_003443290.1|1034948_1036325_+|multicopper-oxidase-family-protein
MSFTRRQILGGLAGLVVVGVGAGGASRYWLGKMADAEAGHDYELIAAPLDVELVPGHQTEAWAFGPSAPGTELRVRQGEWLRVRFINHLPVATTIHWHGIRLPLEMDGVPYVSQLPVLPGEYFDYKFRVPDAGSFWYHPHVNSSEELGRGLVGPLIVEEREPTGFQHERTLSIKNWHVDEEGGFLPFSITREAARGGTPGRLSTINGSHVPTIDLPAGQITRVRILNLDNTLTYRLNIPGIEARIYALDGNPVEPRPLGKEYWLGPGMRICLAIKAPAAGQELSLRDGPVRLGTLRSVASNAAAVEWPPALPANPIAEPDVANAEKINFNFEWVGSVSENLGPDQPPSLWQINGVAWDIKDKTCADRPIAKLKLGQSYIFELKNMTQYQHPIHLHGMSFKVLASNRKKIIPYFTDTYLLGKNERARVALVADNPGVWMFHCHVIDHMETGLMAAIEVS
>NZ_CP013861.1|WP_003443292.1|1033351_1034380_+|FUSC-family-protein
MSQSLTVKMLEAVRNVPIGYVVCGGVVCTVPALLAARLHNPLFCWSAIAAFWSYLSIPSDKSPKGCIFGLVFGITGAVASGLGAWTMVWPQLAIALSALFAFAGAYAQVCGARISIPALLTATAFAVSTAFPAKDFAQGFAYARYFLYGSLWATGSALLFQWCQYDQPDAAKRPVLWSALRTNFTPKSNFFLHGLRVALSGALSVWLVQLWSLHYGYWMTLTVFLIMQPYMHSTLRMSLERVGGTFLGGAIAAVLGYAIHDPFLLAALILPVSIGTLAGRSVSHISYLMFLTPHFILVAQVGQSGGSELDLVFLRMLYSTGGALLAIIASLVIFPRWQTAEP
>NZ_CP013861.1|WP_003443295.1|1032198_1033338_+|FMN-dependent-L-lactate-dehydrogenase-LldD
MIISSASDYREAARRKLPRFLFDYIDGGAYAEHTMRANSADLASISLRQRILRNVDSLSLKTTLFGKEQSLPIILSPVGLTGMYARRGEVQAAKAAATKGIPFCLSTVSVCSIEEVSSQSSQSIWFQLYVLKDRGFMRNALERAQAAGVTTLVFTVDMPTPGARYRDAHSGMSGPLAASRRILQATTRPDWAFNVGILGRPHDLGNISKYLGKATTLEDYVGWLGNNFDPSISWKDLEWIREFWKGPMIIKGILDPQDAKDAVSFGADGIVVSNHGGRQLDGVLSTARALPPIAEVVGDDLTVLVDSGIRSGLDVVRMLALGAKACLLGRSTVYALAADGQHGVENMLDIFSQEMRVAMTLTGVTSIDKIDRTALVPVE
>NZ_CP013861.1|WP_010655639.1|1031190_1032066_-|LysR-family-transcriptional-regulator
MNLRTLRVFVEVVRQGGFSQAAEVVSLTQSSVSKAVRTLEDELGTPLLNRIGHKSELTAAGEIAYRRALVLLAERNDLIAEINELRDLKGGTLRIGLPPVGSGVLFAEMFATYRSRYPMVNIELIEHGSKKLCECLEAGEVDLAALLIPIDETFAYQEVRNEPLVVVLPSAHSLSRRKRMNFSDLADSPFILFDEGFALNALIMAACDRRGIVPRVTARSGQIDFIADLVAAGLGVAFLPRMLAQKHKHAGIALVPLEEPHTDWNIALAWRAGAHLPPAAMAWLDLAKELR
>NZ_CP013861.1|WP_010655638.1|1028545_1030144_-|hypothetical-protein
MDRYEPPEPRSPLPELTQLLTPGTLGFYTHVECTELYASRPDHDGIINIFTLLIAEEQSDLEPAAACFLTPKPIRIKSLNGWSFGLRRYTVAIGTLIPALTALEAGEGWKLSGDELEIGELLPMPAQFVPPDNGAPVPWNKLLKNNFWTGSHLFEWTDHKKEPLTPLFADPRRLQELSAEIEKYIPLQLATMSDRLGNLAVQLPITVLMAKFEKLQDGDFQVEHAWHPKASPRPLMAVCELEHDDIITGFASARLKERITPLPMRAGRGLHRGFIWDEQSSTLLVASGAGSFISTISFNMRSPDPEPRTFSVKKPDGSWDSRRVGMTAFSNHSIVGDPQPDDNGGWTAKRMYAEQANRLAAERRFVQYRPTRGDKNAGRRKALDDLRALIIAYGEKGAWLWDPYLSANEILETLFYCPYQGVDLRGLTTSKAGPSDKIRQTLDECQSNWRGLKLELRVQKGAAGWDFHDRFLIFPSGPDGAMAWSLGTSVNSVGTAHHILQKVDNAQLVVDAFTDLWELLGGQDHLIWRRPS
>NZ_CP013861.1|WP_010655637.1|1027088_1028549_-|hypothetical-protein
MNAADVLLSAMAEATRPGAVEVPNSLLAAIEAQSDPFHAISDWDACNELFDAIRSQFSFVELVRRGKPPSGEDFDKLTGLLRWIIQEGADWNVSADPSRTRLVALFVVGQFTTMEANFWSTVPDDFRPNDGLLASLERVIEGLTMSFTTKGLAPPIWELEAVEKFEKADAKSDWIGIAQGWRLIEDGFFPSIAIAQTAQCLDRFAPERLVQAISGLRQTAPVMSVVLSLPPNAALRLGSRSTNPHVQFATTYISVSLRSNREPLSEDSKKSLVQILENVSKDKPRWAAWMHVFNLFPSRFPELQTPLGCALADANDTALQAYVDAISLHWSGQQTRFSVAECLRAFRDRAIAKKRKALWNFAFQRWMCWGYGLNGTADSLIKISRCELDYALVGYAVECLDGDPRQHMIASLIEKLQTVENNWHPGITDCLSEWNAVLSEMQPLFLAISIEGTDADWIDEKPTMRLPFDPDKEAYVILKYGRPQID
>NZ_CP013861.1|WP_010655636.1|1026275_1026587_-|hypothetical-protein
MFTRSLLLSFCAVLLVGCTGRGFQPPAPDYTKWYKEGVSQTGIIAAMRACGYTNVDGAGDRSPIDVRLLNFYCMKDAGYKRKDNLDMCKLGRIGESPVCDGRR
>NZ_CP013861.1|WP_010655634.1|1025464_1025650_+|hypothetical-protein
MKDRSHDDVMAEFFQADPSYAAGLLAEVVRDGDANELAILKRQLSGAFAIKNANQRSLTEL
>NZ_CP013861.1|WP_010655633.1|1024078_1025263_+|GIY-YIG-nuclease-family-protein
MANEFDLDELEAELSDFAASDKKTGRTPREERIIAGFEDIQRFVKERGHAPRHGDDKDIFERLYAVRLDRLRDQEESRPLLMPLDHEGLLNLPEVRDPQGDYMMTDDELLAELAGGDDGSDIQNLRHVRSNAEKREAEEIAQRERCEDFEHFQPLFEQVQRELHSGVRVTRIFIRDASIEEGQFFILGGQTVYVAEVGETIKAPNGESDARLRVIYSNGTESNLLRRSLQRALYKDDAGRRITDADAGPLFGETLEPDDIESGTIYVLRSHSTHPFVVEHRELIHKIGVTGGKVETRIAGAEKDATYLLADVEVVATYKLHNINRTRMENLFHRLFSTAQIELTIPDRFGNPVKPREWFLVPLHVIDEAVERIRDGSIASVMYDPASARFNGLK
>NZ_CP013861.1|WP_010655640.1|1036981_1037938_-|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB
MIDLSPLARRLAGTPLAAWANALQAQLDVKMEKGHGDLERWQSALDALPDVKPTEIDLLNGLTLDTDCDDATRTQMRQALMGLSPWRKGPFDLFGVHVDTEWHSDWKWSRVAPHINLKHKRILDVGCGNGYYMWRMLGAGAHSVIGVDPNWLFFCQFQAVQRFLQQEAAWHLPFPFEDLPPNLEGFDTVFSMGVFYHRRSPIEHLLALKDCLVKGGELVLETLVIEGDVNQVLVPEDRYAQMRNVWFLPSIPALERWLRRAGFNDVRCVDVSTTTVEEQRATEWMKFQSLSDYLDPNDPGKTVEGLPAPMRAVIIARK
>NZ_CP013861.1|WP_003443285.1|1037934_1038678_-|carboxy-S-adenosyl-L-methionine-synthase-CmoA
MSKEPDRIFAQPLAQVPDFAFNEDVVRVFPDMIKRSVPGYPTIVENLGVLAAQFAQPDSVLYDLGCSLGAVTQALRRHVRSEGCQVIAVDNSPAMVERCREYLNAQNSMFQELLPVDVIEGDILALEFKPASVVALNFTLQFIAPEQRLALLARIRQSLLPGGALILSEKLRFNDPEEHALLTDLHVAFKRANGYSDLEIAQKRSAIENVMKPDSLEEHRERLLAAGFSKVVPWFQCLNFASLIALP
>NZ_CP013861.1|WP_082711665.1|1038791_1039133_-|hypothetical-protein
MPALALALLAGISLLSVMAAKGLGDLLIPVCIYALTISAMLWRALARLGSGVPGRSAWLAAAGALAFVASDSMIGINRFVLSFDAAPYLIILTYWLGQWGIAASAFSQSKRDH
>NZ_CP013861.1|WP_003443281.1|1039747_1040140_-|protease-inhibitor-I42-family-protein
MPHARILSLLSLSLLTACAHPPANNLTVEDQSDCPIQLHNGQNLTLSLPSNPTTGYRWAIQDSAGGILRSLSPEVYSSTDNGQLLGSGGQSTWRFQAFATGNGRLRLTSQQPWEPEAEPAQTFDCQITVN
>NZ_CP013861.1|WP_003443279.1|1040376_1042806_-|endopeptidase-La
MSDQQEFPDNTTEYTDVEHTETESTEHAAGTELALPGQNLPDKVYIIPIHNRPFFPAQVLPVIVNEEPWAETLELVSKSPHHSLALFFVDTPPDDPRHFDTSSLPEYGTLVKVHHASRENGKLQFVAQGLTRVRISMWLKHHRPPYLVEVEYPKENTAPTDEVKAYGMALINAIKELLPLNPLYSEELKNYLNRFSPNDPSPLTDFAAALTSATGNELQEVLDCVPILKRMEKVLPMLRKEVEVARLQKEISAEVNLKIGEHQREFFLKEQLKVIQQELGLTKDDRSADIEQFKQRLEGKTLPPQAQKRIDEEMNKLSILETGSPEYAVTRNYLDWATAVPWGVFGQDKLDLKHARKVLDAHHAGLDDIKNRILEFLAVGAYKGSVSGSIVLLVGPPGVGKTSVGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALKDVEVMNPVIMLDEIDKMGQSFQGDPASALLETLDPEQNVDFLDHYLDLRLDLSKVLFVCTANTLDSIPGPLLDRMEVIRLSGYITEEKIAIAKRHLWPKQLEKAGVSKNSLSISDSALRAVIDGYAREAGVRQLEKQLGKLVRKAVVKLLDDPEAVIKIGPRDLEASLGMPPFRNEQVISGTGVITGLAWTSMGGATLPIEATRIHTLNRGFKLTGQLGDVMKESAEIAYSYISANLQKFGGDPRFFDEAFVHLHVPEGATPKDGPSAGVTMASALLSLARNQAPKKGIAMTGELTLTGYVLPIGGVREKVIAARRQKIHELILPEPNRGNFEELPDYLKEGITVHFAKRFADVAKVLF
>NZ_CP013861.1|WP_010655644.1|1043005_1045423_-|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase
MSTDGAFSRGRLLPSLLGILLLLMGLAMLVGGIKLLTLGGSSYYLLAGIGFGLSGALLIAGRRAALGLYALVLFASTVWALMEVGLDWWQLVPRLALWFAIGIVLLLPWFRRPLLRGQPAPVATGALGVAVVLAGAAALASQFTSPGEIKGQLDRDAVPGMTNTAPAMPDGDWQSYGRTAHGDRYSPLKEITPQNAHKLVPAWTYRTGDIPGAGDPGETTAENTPLKVNGMLYVCTPHSQVIALDPDTGKEIWRFDPKISTMNEANFKGWAHMTCRGVSYHDEAAYAKAGTEQSPAEPAAATASNSCPRRLFVPTADTRLIAINADTGKMCEDFGDHGQVDLRHNIGDFTPGGYYSTSPPAVTKDLVVIGGHVTDNLSTNEPSGVIRAYDVRTGKLVWNWDSGNPDDTTPIAEGKTYTRNSPNMWSMFAVDENLGMLYLPMGNQMPDQYGGDRTEDSEKYSAGVTALDINTGKVRWTRQFTHHDLWDMDVGGQPTLMDMKTADGVKPALLASTKQGSIYVLDRRTGEDIVPIHEVPAPGDAVKGDHTSPTQPRSDLNLSPPDLTERDMWGVTPFDQMLCRINFKSLRYDGMYTPPSLQGSIVYPGNFGVFDWGGISVDPVRQIAFLNPSYMAFTSKLIPREEIAALGPRVSETEGVQPNEGAPYGVILEPLLSPLGLPCQAPSWGYVAAVDLTNNQLIWKHKNGTVRDSSPVPLPLPMGVPSLGGTFTTAGGVAFLSGTLDQYLRAYDVSNGKLLWEGRLPAGGQATPMTYTGKDGTQYVLVVAGGHGSLGTKQGDYVVAFKLAE
>NZ_CP013861.1|WP_167542001.1|1045553_1046936_-|porin
MSTFQILRKPGARRPIAGQKALSLLGSLAVLGLASSVQAAPAFDSDSKWMLGDWGGTRSELEKQGYAFSLDYVGEVGSNLHGGYDHDRTARYSDQFGLGTHLDLQKILGWNDAEFQLTITQRSGNNISNDRINDPRVGGFTSAQEVWGRGQTTRLTQMWYQQKFFDQKLDIKVGRFGQGEDFNTFPCDFQNLAFCGSQVGNWAGSIWYNWPVSQWALRVKYHLTPELYAQVGAYEQNPSNLDRGNGFKLSGSGTQGAVLPIELVWTPKINGLPGEYRAGYYYSNAKATNVYKDVNGQPAALTGEAYRSSSSKNGMWLGVQQQLTSRASDQSRGLSVFANATAHDKKTNAVDNYVQAGLIYKGVFDARPKDDIGFAMARVHVNPAYRKNAQATNQARALYDFDNPDYLPPQDTEYSAELYYGVHVTNWLTVRPNLQYIRHPGGVSKVDDALIGGLKIQSSF
>NZ_CP013861.1|WP_010655645.1|1048161_1050198_-|TonB-dependent-receptor
MSAPAFPRNLRRLRLTPLATALLIASPAYALELQPQVITGNPLGSSQLASPTTVLEGDDLTLQQQGSLGETLNKQPGVSSSYFGPGASRPIIRGLDGDRIRILRNGVGALDASSLSYDHAVPLDPVNVERIEIVRGPAALLYGGNAIGGVVNTFDNRIPTEAIDGIHGAGELRYGGAATTRSSAGKLEAGDGTFALHLDANAREFNDLKIPGEARSRHAPQSDDDDSKRGRLGNSNGRQDGGALGGSYTWDDGYAGLSYSTYDANYGSPAEQDVRIRMKQDHYAFASEIRNLQGPFSALKLNAGYTDYEHREIEGGEVGTTFKNKGYEARVEARHLPLGPLNGVIGAQVNRNEFSALGEEAFVPQTDTNSGALFILEELQATDRLKLSLGGRLEHTVVDPDAKGNERFSAADSSKSFTAASLSSGAVFTLTPIWSLAATLGYTERAPTFYELYANGAHVATGTYEVGNASLSKEKAVSSDLALRFDNGTHKGSFGVFYSHFSNYIGLLGTGRTLNEEGQPDADGIPEYTYSGVRARFTGFEARDHWTLGESAYGKFALELSGDYTRATNLDTGEALPRIAPLRLSSGLLWELDRWQARIDVEHASNQGRVPANESGTDGYTTLGASAGYHFDVGSSQWLAFVKGDNLTNQTVRYASSILRDIAPAPGRGIEVGLRTTF
>NZ_CP013861.1|WP_003443274.1|1050419_1050650_+|DUF2132-domain-containing-protein
MTEPNNNPLHGVTLEQILTALVAHYEWEGLAERIDIRCFKSDPSIKSSLTFLRKTPWAREKVEKLYVKYARTKREL
>NZ_CP013861.1|WP_010655646.1|1050672_1051326_+|Pr6Pr-family-membrane-protein
MGLSEARQRMLCRLVAILGWIGLAIQLDLVLFARWTSGASLVGGLVAYFSFFTILSNTLAATVLTFAAGTRNATGKGFFLQPWVSSGIAVSIIVVGVAYSLLLRQLWQPQGLQWLANEVLHDIMPVLFTLYWWFCVPKGSLRLSHIGLWVLYPALYFAYILLRGHLLGTYPYPFVDVETLGYAQVFVNACGILAGFVLVALVVVGLDRWRGRTTLLL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP013861_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013861_2

1937017-1937140

Orphan

Consensus_repeat	Method
GCGAGCTGTTGCGATTTGCGCTGAAAAGCTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013861_2

>merge|NZ_CP013861|2|1937017-1937140|CRISPRCasFinder
GCGAGCTGTTGCGATTTGCGCTGAAAAGCTCGTGTGCTGCGGGATACGATTTCACTGACACCCCGCAACACCTGTAGGAGCGAGCTTGTCTCGCGAGCTGTTGCGATTTGCGCTGAAAAGCTCG

>NZ_CP013861|2|2|1937017-1937140|CRISPRCasFinder
GCGAGCTGTTGCGATTTGCGCTGAAAAGCTCG	TGTGCTGCGGGATACGATTTCACTGACACCCCGCAACACCTGTAGGAGCGAGCTTGTCTC
GCGAGCTGTTGCGATTTGCGCTGAAAAGCTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013861.1\|WP_010656109.1\|1930586_1931999_-\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_CP013861.1\|WP_010656110.1\|1929319_1930528_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173852
NZ_CP013861.1\|WP_003447525.1\|1927582_1929295_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
NZ_CP013861.1\|WP_010656106.1\|1936577_1936988_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013861.1\|WP_003447539.1\|1937698_1939108_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP013861.1\|WP_010656107.1\|1933138_1936360_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP013861.1\|WP_010656112.1\|1922712_1923765_+\|NADP(H)-dependent-aldo-keto-reductase	unknown	unknown	gnl\|CDD\|381320
NZ_CP013861.1\|WP_003447523.1\|1926722_1927586_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP013861.1\|WP_010656103.1\|1943738_1947086_+\|maltose-alpha-D-glucosyltransferase	unknown	unknown	gnl\|CDD\|274140
NZ_CP013861.1\|WP_010656102.1\|1947085_1949311_+\|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl\|CDD\|235445
NZ_CP013861.1\|WP_003447541.1\|1939226_1940648_-\|cytochrome-c-oxidase-accessory-protein-CcoG	unknown	unknown	gnl\|CDD\|274278
NZ_CP013861.1\|WP_010656101.1\|1949545_1950346_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|226098
NZ_CP013861.1\|WP_003447543.1\|1940913_1941150_-\|DUF3203-family-protein	unknown	unknown	gnl\|CDD\|314397
NZ_CP013861.1\|WP_010656108.1\|1931982_1933149_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP013861.1\|WP_060781753.1\|1941680_1943678_+\|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	unknown	unknown	gnl\|CDD\|200482
NZ_CP013861.1\|WP_003447522.1\|1925745_1926726_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP013861.1\|WP_165439661.1\|1941307_1941466_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182059
NZ_CP013861.1\|WP_010656100.1\|1950407_1951109_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133016
NZ_CP013861.1\|WP_010656111.1\|1924046_1925732_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173857
NZ_CP013861.1\|WP_010656099.1\|1951105_1951705_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|283141

Protein	Function_ID	Function_description	E-value
NZ_CP013861.1\|WP_010656109.1\|1930586_1931999_-\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	2.52429e-89
NZ_CP013861.1\|WP_010656110.1\|1929319_1930528_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173852	cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.	3.72303e-135
NZ_CP013861.1\|WP_003447525.1\|1927582_1929295_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NZ_CP013861.1\|WP_003447543.1\|1940913_1941150_-\|DUF3203-family-protein	gnl\|CDD\|314397	pfam11462, DUF3203, Protein of unknown function (DUF3203). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	3.24706e-11
NZ_CP013861.1\|WP_003447539.1\|1937698_1939108_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.64654e-149
NZ_CP013861.1\|WP_010656107.1\|1933138_1936360_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP013861.1\|WP_010656112.1\|1922712_1923765_+\|NADP(H)-dependent-aldo-keto-reductase	gnl\|CDD\|381320	cd19094, AKR_Tas-like, Escherichia coli Tas protein and similar proteins. Escherichia coli Tas protein is the prototype of this family. It is an NADP(H)-dependent aldo-keto reductase that catalyzes the reversible reduction of ketones to the respective alcohols using NADP(H) as a hydride donor.	8.29134e-173
NZ_CP013861.1\|WP_003447523.1\|1926722_1927586_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.59147e-80
NZ_CP013861.1\|WP_010656103.1\|1943738_1947086_+\|maltose-alpha-D-glucosyltransferase	gnl\|CDD\|274140	TIGR02456, Trehalose_synthase, trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (). [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP013861.1\|WP_010656102.1\|1947085_1949311_+\|1,4-alpha-glucan-branching-protein-GlgB	gnl\|CDD\|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
NZ_CP013861.1\|WP_003447541.1\|1939226_1940648_-\|cytochrome-c-oxidase-accessory-protein-CcoG	gnl\|CDD\|274278	TIGR02745, iron-sulfur_cluster-binding_protein, cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.	0
NZ_CP013861.1\|WP_010656101.1\|1949545_1950346_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	2.58536e-67
NZ_CP013861.1\|WP_010656100.1\|1950407_1951109_-\|glycosyltransferase	gnl\|CDD\|133016	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.	3.30644e-15
NZ_CP013861.1\|WP_010656108.1\|1931982_1933149_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.80099e-54
NZ_CP013861.1\|WP_060781753.1\|1941680_1943678_+\|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	gnl\|CDD\|200482	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins. GlgE is a (1,4)-a-D-glucan:phosphate a-D-maltosyltransferase, involved in a-glucan biosynthesis in bacteria. It is also an anti-tuberculosis drug target. GlgE isoform I from Streptomyces coelicolor has the same catalytic and very similar kinetic properties to GlgE from Mycobacterium tuberculosis. GlgE from Streptomyces coelicolor forms a homodimer with each subunit comprising five domains (A, B, C, N, and S) and 2 inserts. Domain A is a catalytic alpha-amylase-type domain that along with domain N, which has a beta-sandwich fold and forms the core of the dimer interface, binds cyclodextrins. Domain A, B, and the 2 inserts define a well conserved donor pocket that binds maltose. Cyclodextrins competitively inhibit the binding of maltooligosaccharides to the S. coelicolor enzyme, indicating that the hydrophobic patch overlaps with the acceptor binding site. This is not the case in M. tuberculosis GlgE because cyclodextrins do not inhibit this enzyme, despite acceptor length specificity being conserved. Domain C is hypothesized to help stabilize domain A and could be involved in substrate binding. Domain S is a helix bundle that is inserted within the N domain and it plays a role in the dimer interface and interacts directly with domain B. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP013861.1\|WP_003447522.1\|1925745_1926726_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.50502e-90
NZ_CP013861.1\|WP_165439661.1\|1941307_1941466_-\|hypothetical-protein	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0.000989101
NZ_CP013861.1\|WP_010656111.1\|1924046_1925732_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173857	cd08492, PBP2_NikA_DppA_OppA_like_15, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP013861.1\|WP_010656099.1\|1951105_1951705_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|283141	pfam05401, NodS, Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.	5.02566e-11

>NZ_CP013861.1|WP_010656106.1|1936577_1936988_+|hypothetical-protein
MTLKPLLLVPSLGLVLLLSACAGPMPKQDPGEAWIGLKEEGNSDLMAERVDGKNINDGRYFEVTPGAHWLDVTLFEGATGDENQVDCQGKVNYRQFKAGERYQLIESSLGPEVSATLVDSHGKEVAHTADFTCMPG
>NZ_CP013861.1|WP_010656107.1|1933138_1936360_-|efflux-RND-transporter-permease-subunit
MLGLVKTALHKPYTFIVLAIFICIIGPLAALRTPTDVFPDIGIPVVAVVWQYTGLAPADMAGRVIYTYERSLSTTVNDIEHIESQSLPGMGIVKIFFQPGVDIRTANAQVTAVSQTVLKQMPPGITPPLILNYSASTVPILQLAFSSPTLSEAKIRDLVQNNIRLPLSSLPGLAMPTPMGGKQRQITLDLDPQALAAKGLSAQDVGNALAAQNQIIPVGTAKLGTYEYTVLLNNSPKAIDELNDLPIKTVNGALITIGQVAHVRDGSPPQTNIVRVDGQRAVLMPALKNGNISTLSIVDGIRSMLPRINETLPPSLKTSLLGDASVFVKQSVGSVAQEGIIAALLTSAMILLFLGSWRSTLIIAVSIPLAVLSAIALLALSGQTLNVMTLGGLALAVGILVDDATVTIENINWHLEQGKSVRDAILDGARQIVGPAFVSLLCICIVFVPMFMLQGIAGYLFRPMALSVIFAMGSSFILSRTLVPTLAMFLLKPHVAEQGPGHHPEDGYINHHEGDRHTPQHCAAVRALLSFQQGFERRFSAVRDGYYGVLKLALAHRKGFLSGFMACVLASFALLPSLGQDFFPATDAGALALHVRLPLGTRIEESAAAFDRIESRIREIIPADQLDTIIDNIGIPLSGIDMAYSSSGTIGPQDGDIQVTLKADHSPTADYVKRLREALPESFPGSQFAFMPADISTQILNFGAPAALDVKVSGRDDAANRTYALELQRRLQHVPGIADLRIQQSVGYPSLQVKVDRLRANGLGITERDVTNSMVASLAGSSQVAPTFWLNPQNGVSYGVVAATPQYRLDSLPSLEALPVTGSSGQSQILGGLATITRGESPAVVTHYNIEPTLDLYANIQGRDLGSVAADVQKVIDGASDLRPKGATITLHGQIDALHEAFSGLSLGLLGAVVLIYLLIVVNFQSWLDPFVIITALPAALAGIVWMLFLSGTSLSVPALTGAILCMGVATANSILVVSFCRERLAEHGDALKAALEAGYTRFRPVCMTALAMMIGMLPLALSEEQNAPLGRAVIGGLMLATVATLLFVPVVFSLVHGREKNRSAAGETTHVV
>NZ_CP013861.1|WP_010656108.1|1931982_1933149_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MSSDPKPSPKRLMYLGIGGLTLAALLVANGLAARSRHGHEVANWTEVAALPVVSVFQPLQNAHGDTLRLPAHLEAWSKASIHARVSGYLKSWHSDIGSKVTAGQVLAVIDSPDLDQQLAQTRAHMLQEQANARLAATTASRWQNLLASHSVSRQEADEKTSNAAAARASAQAAEADYARLSSLEDYKTIRAPFAGTITARHTDIGQLIKADTDSDTELFDIADTHQLRLYVPVPQNYASVIRPGMPVQLSVPEHPGQTFSAKLIGNSAAIDQRSGTLMAQFVAPNPGDVLMPGDYAEATLAIPPDTHGVSIPASALIFRAQGTQVAVLDSARHVHMQNIHIGLDLGDRLVIDQGLKPADTVIDNPPDALREGDPVKLADAGATHAAKA
>NZ_CP013861.1|WP_010656109.1|1930586_1931999_-|efflux-transporter-outer-membrane-subunit
MQPKLKRGALLLALALQGCSLAPAYRPPQLDLPQHYREQSSDNPWHSAQPADQLSPQWWRLYHDERLNALQQRLLKTNPDLAAALAHYQGAQAYASQLHAGLLPQITASGQPLRQRQSDSRPLRGSDQPAVYNSNTAGFALNFDLDLWGKIRNQVAAGDARALASADDLAVARLSLQRQLASLYVQLDGLDAQQRILSSSLDDYSQALQLTRARYQGQISSELDLTRAQSQLAEAEAQLDDVRGQRNLTEHAIGELLGEPASNFELPAGKQTLSLPAQPGALPSTLLQRRPDIAAAERRMFAANAQIGVAKAAWYPDFSLTGLLGGQTQGSGNLLAASNRFWALGPLVNLPIFDGGRLNAEERQARSEFEEASAHYRSQVLHAVREVEDNLAQLRDLRQQGLDQQAAANAAEHTRALATNSYEAGAVSYLDVVTAQTAALQAQRAVQALRTRQLQASVGLLTALGGGWAG
>NZ_CP013861.1|WP_010656110.1|1929319_1930528_+|acyl-CoA-dehydrogenase
MSKLFAVTERPVATVAELNARADRLLPEIGQGAALRERDRLLPFEAVAQIAKAGFFSARIPVRYGGSGGSVKEVIGLLIRIAAVDSNVAQALRPGFGFVEGLLASRADDAEGERERWFERYLQGAVIGNAGWEVGGANGSISARIVRDGEHYRATGHKYYSTGSLYADWVSAVALDENDQPVSFILPRNRQGLELLDDFDSMGQRLTASGTTRLNNVQVLAQEIRTRTVEEGKRTIVTPFLQLFLAAVQAGIARNALNDAVAFANEHARPIKHSSANRSVDDPYVELSVGDISARAFTAEAVVLRAAEAIDRAWAGDLDPLLVDRAAVDVAQAQYIAAESALKAAELVFDVGGASTTGRAHNLDRHWRNARTVANHNPRQWKAAAVGAWQLKGTPPPTSGLF
>NZ_CP013861.1|WP_003447525.1|1927582_1929295_+|ABC-transporter-ATP-binding-protein
MSDKHLIVEGLSIEFDGQTVVHNLSFTLAPGKTLALVGESGSGKSVTARSLIGLAGAGARVTARTLSYGGQDLLGLSERGWRRLRGKGIGFVLQDALVSLDPLRPVGKEILEVLKAHNWGDRRSRAERVIELLDKVGVPQPRLRARQRPDQLSGGLRQRALIASALALSPGLVIADEPTTALDATVQAQILEVLQEIKARGDSLLIISHDLAVVAQLADEVLVLRHGVTVEQGPMQQVLRNPRHPYTRALLDAVPAEHARGTRLSPGQPAVGGQPRPAADSPLLLRASGLGKAYVGPDHQSRQVVDGVSFELRAGRTLGIVGESGSGKTTVARMVLGLLEPDAGRVEFLGQPWTAAGSQRVTEKQRRLHRRDISVIYQDPLSSFDPRWSVARILADALDVAGYEAGQQAVRIRQLLEQVRLPADLATRRPLQLSGGQRQRVAIARAIASNPKVIICDEPVSALDVSVQAQVLDLLADLQASLGLAYLFISHDLGVIRHVSDEVLVMRHGKVVESAPVEALFDNPQHEYTRRLLGAVPRLPGAQVQLVVPPLEAENSAWLFDESQLWKIAI
>NZ_CP013861.1|WP_003447523.1|1926722_1927586_+|ABC-transporter-permease
MSELTFETTLPAVRVQRTASRLRPGPLLAVTFLAFLIIAALAPQLFAHSDPLAIVPHDAFHPPGWAHWFGTDQSGRDIFSRVIYGTRQSLFIGLAATALAMGIAIVLGLLGGLGGAYLDRGVGWLLEILFAFPSLVLALLFVAIFGSGVGPLIVATGLGGAPGYARMVRGQVLAVRNAGYIEAAVALGHPTRRIILRQLLPNAMRPLIVTLTMGVGQAIVWASALSFLGLGAPPPAPEWGTMLSMGRDFVANAWWLTFFPGLFIVLTTLSTTVAGRYLQQRLEGRLS
>NZ_CP013861.1|WP_003447522.1|1925745_1926726_+|ABC-transporter-permease
MSAITYSNARHERLARLARRATWRLAGGVLVLWAVATLTFFALHLMPGDPVLAILGGASGNPTAETIAQATREFGLDKPLAVQYALYLGRLLQGDLGMSYSQHLPVTQVLAEQSWATLQLTFSALALAWLLVLALTVLTAGRGRWVSSLASLAETLAAALPHFWLGILLLAVFAFGLRWFPPAGSDGWRTLVLPAVALAIPLAGFIAQVTRESLELTLEQPFVLTARTRGLSDTAVRFKHALRHAVLPGISLSGWAIGALISGAVVIEVIFSRKGLGRQLYQAVQAQDLPLTIGISLAVAAVYVLANIVIDLLYLWIDPRQQGKTA
>NZ_CP013861.1|WP_010656111.1|1924046_1925732_+|ABC-transporter-substrate-binding-protein
MLERSPHLRSQGRRSRSLLKRTPLIGFAALCSLLVGCGPDTSTVARSDKPVSGGTLVYATDREPTCLDPHVSGDMPQVFIGQQYLDSLVSMDEQGQIGPWLAKGWEVSADGLVYTFHLRNDVHFTDGTPFNAAAVKANLDHMANPKTQSSTAGGYIRQYRSTEVLDDYTAVVHLATPYAAFLEVLAQGFLGIESPTALLRSRDQNCESPVGSGPFKIVKWDRQSQVELVRNPDYNWAPPTARHQGPAWLERIVWKFIQEPSVRFASLQAGEVDVIEALPPESHEAARRNPDLTMLVALRPGNPTNGTLNITRAPFDNVKVREAFVRSADVEGALKSVYFNEFPRAGGALSSATRFYSPDFEHAQDYDQGRAAQLLDESGWTGRDAEGYRTRDGKRLQVHVVIGNRTPPSELTLWEQVQATTRKAGFELLVEQMSDVQATQRQADWDYDIRVGYWNTNSADVLRIVFGSEFVQPAGVGGYHQNTAGFASPQFDAINQQALATQDPEQRRALYYQTQQIASQQYLQLTTYPQSSRLGIYKTTQGVRLEPSLAVTYLYDAWVNK
>NZ_CP013861.1|WP_010656112.1|1922712_1923765_+|NADP(H)-dependent-aldo-keto-reductase
MRYRQLGRSDIKVSVIGLGTMTWGHQNSESDAHQQIELALAEGVNLIDTAEMYPTPTHADTWRTTERYIGSWLARSGRRADVVLASKIAGPAREPGGQLHIRDGLTRHDRRNIVEALDGSLKRLNTDYLDLYQLHWPDRATNFFGQREYPYAEDNQSVAIEETLSVLAEQVKAGKIRHIGVSNETPWGVAEFIKQSERLGLPRIVSVQNPYSLLSRLYEGGLSEFSHREGVGLLAYSPLAFGSLTGKYLGGARPEGSRLAAVYRTFNRYDGPAVDQAVNGYLEIARQHNLSPAQLALAYVINKPFVASALTGQTSLAQLRENLGALHLTLDPDILAQIEAVHQRTPNPAP
>NZ_CP013861.1|WP_003447539.1|1937698_1939108_-|PLP-dependent-aminotransferase-family-protein
MKRYEKFADDIAELIRSGVLGPGQRVPSVRYASQTYGVSPSTVFQAYYLLERRGLIRAKPRSGYFVNVHAPSPFSEPVFSSHVTESTEVDVSALVFSVLDSMKDPHTVPFGSAFPSPTLFPLQRLARSMATASREMDPRMVVTDMSPGNPQLRRQIALRYMVGGLMLPMEELLITNGALEALNLCLQAVTEPGDLVAIEAPAFYACLQVLERLKLKAVEIPVHPRDGIDLGVLAQTLERHPIKAVWCMTSFQNPIGATMPEAKKQALVELLRGHQVPLIEDDVYAELYYGQHAPKPAKAFDSEGLVMHCGSFAKSLAPGYRIGWVAAGRYAQKIERLKLMTSLCASMPAQAAIADYLQHGGYDRHLRKLRYALEEQQSAMLAAIARYFPAQTRVSQPSGGYFLWLELPEQMDSLKLFQMALAQGISIAPGPIFSATQRFRNCIRLNYGSPWNEASEKAMETLGKIVRSF
>NZ_CP013861.1|WP_003447541.1|1939226_1940648_-|cytochrome-c-oxidase-accessory-protein-CcoG
MSEQIPVQILETFEASRPRAAKNKSRSSDNLIHTRSFTGLFRTLRIVGAGFLFLLFFGTVWLNWDGRQAVLWDLSESKFHIFGATFWPQDFILLSALLIIAAFGLFAITVFAGRVWCGYTCPQSTWTWLFMWCEKITEGDRNQRIKLQAAPWRLNKILRRTAKHALWMAISVMTALTFVGYFTPIRPLATELLTLEMAGISLFWVLFFTGATYINAGWLREAVCMHMCPYARFQSVMFDKDTLAISYDVNRGESRGPRKRGVEPAQAGLGDCIDCQMCVQVCPTGIDIRDGLQMECIGCAACIDACDTVMDKMGYARGLVRYTSEHQLQGGTTHLLRPRLIGYAAVLVLMIGALVVALDQRSMVSLDVIKDRGLFRENSQGQIENIYSLKIINKTQEPQHYRVSLQDNQDFRLQGKTELTLAPGEIVDVPVSVALLAERPKSSSQTIGFVVTDTDQPSVRSVAKSRFVAPLNR
>NZ_CP013861.1|WP_003447543.1|1940913_1941150_-|DUF3203-family-protein
MTITIDADKSCWYESPEGSEHSPAERVEVITDHASRMCMALMNGLRIAITSDEAEALVAAGAKDSRELLRAGGSESII
>NZ_CP013861.1|WP_165439661.1|1941307_1941466_-|hypothetical-protein
MNIPIPAETPDPNIDDPVLPPGDAEPVPEEDPPLKDPDPIGDPPCEDAPMRI
>NZ_CP013861.1|WP_060781753.1|1941680_1943678_+|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase
MTADFPQDPDSTVTLPLSQALLLPRIVIEATSPVLENGEFAVKATAGQQVDVLSKVFVDGHEQLAVMLHWRLASSAHWSATPMHFLGNDSWNAQFPVPEVGRYLFCIEAWIDRYASFCHELEKKHQAGIAVSLELQEGRILVQHAIELSQGERREQLQALLGQLSGLLETEQVALFMHEHSAQLMAEAQNHAYLSLSPKYPVEVERPLAQFASWYELFPRSVTDDPARHGTFNDVHQRLPMIHDMGFDVLYFPPIHPIGRRHRKGPNNALQAGPDDPGSPYAIGSEEGGHDAIHPQLGSRDDFRRLVAAAADHGLEIALDFAIQCSQDHPWLKQHPGWFNWRPDGSIRYAENPPKKYQDIVNVDFYAPDAIPGLWLELRDIVLGWVDEGVKIFRVDNPHTKPLPFWQWLIADVRAQNPEVIFLAEAFTTPAMMARLGKVGYTQSYTYFTWRNTKAELAAYFTELNQSPLRECFRPNFFVNTPDINPGFLHDSGRPGFLIRAALATMGSGLWGMYSGFELCESAAVPGKEEYLDSEKYQIRPRDFSAPGNIVAEIAQLNRIRRQNPALHSHLGLTLYNAWNDNILYFGKRSADGSNFVLVAISLDPHNAQEAHFELPLWEMGLADDAWTSGEDLMNGHRWTWYGKTQWMRIEPWHQPFGIWRIKPL
>NZ_CP013861.1|WP_010656103.1|1943738_1947086_+|maltose-alpha-D-glucosyltransferase
MANQPASASFIKDPLWYKDAVIYQVHIKSFFDSNNDGIGDFPGLISKLDYIAELGVNTLWLLPFYPSPRRDDGYDIADYRGVHPDYGTLADVKRFIAQAHKRGLRVITELVINHTSDQHPWFQKARRAKAGSRARDYYVWSDTDEKYDGTRIIFLDTETSNWTWDPVAGQYFWHRFYSHQPDLNFDNPQVMKEVLAVMRYWLDMGIDGLRLDAIPYLIERDGTNNENLPETHQILKQIRAEIDAHYPDRMLLAEANQWPEDTQQYFGDSDGINGDECHMAFHFPLMPRMYMALAQEDRFPITDILRQTPEIPANCQWAIFLRNHDELTLEMVTDKERDYLWNYYAADKRARINLGIRRRLAPLMERDRRRIELLNSLLLSMPGTPTLYYGDEIGMGDNIYLGDRDGVRTPMQWSIDRNGGFSRANPASLVLPPIMDPLYGYQSVNVEAQSGDPHSLLNWTRRLLSVRQQQQAFGRGTLKMLSPSNRRILAYIREYTDGDGKTETILCVANVSRSAQAAELELSEFAGRVPVEMLGGNAFPPIGQMDFMLTLAPYGFYWFLLATENQMPSWHAEPAQSLPELLTLVLKQRLEELLDTPPRTTLENVILPAWLPKRRWFGQKNAPVEQVKILHGTRFGDALHPMLLTEVQVTSGGEQHHYQVPLGVLGEDQASSTLAQQSVLSRLRRGPQVGFMTDAFALEAFVRAVLAGMQSGEKISSSAGTISFTATAQLAALGLNEQSEVRYLTAEQSNSSVVIGGAMVLKLIRKISSGQHPELELGAYLTEAGYQHISPLLGAVVRHGTGGEETLLMIAQGYLSNQGDAWTWTQNNLERAIRDEMADAMSEHEQHYNALAELADFAGLLGQRLGEMHGVLAQASDNPDFAPQTTSEADTRQWASHINGQLKQALKLLKQHLPELGEPEQKQVKKLLAQQGAITAHVQQLAKRTQGGLKIRVHGDLHLGQVLVVKGDAYFIDFEGEPARPLSARRSKHSPYKDLSGVLRSFDYAAAMAVSNVQQSDHSDQADDARQRVVERYLQEARTALVDAYRQATASLAHDWKVAGGEDAALALFSLEKAAYEIIYEAANRPAWLRVPLQGLSDLLTHLPSTAKPLPDGEK
>NZ_CP013861.1|WP_010656102.1|1947085_1949311_+|1,4-alpha-glucan-branching-protein-GlgB
MSSNKVPGPGKMAVLPARDDIEALINTRHRDPFAVLGPHPDGEGGQVIRAFLPGALSVKVVARDSDEVIGTLDSSEVPGLFAGHFADVRGYRLSISWAGGEQTSEDPYSFGPLLGEMDLYLFAEGNHRDLSSCFGAQVMSVDGVPGVRFAVWAPNARRVSVVGDFNIWDGRRHPMRLRHPSGVWELFIPRLAPGEAYKYEILGANGILPLKADPVALATQLPPDTASRVASPLQVDWQDAAWMQSRAEHQKPDAPLSIYELHTGSWQCEVDDIGEVARLYNWHELAERLIPYVQKLGFTHIELMPIMEHPFGGSWGYQPLSQFAPSARYGSPDDFAAFVNACHVAGIGVILDWVPAHFPNDTHGLAQFDGTALYEYANPLEGYHQDWNTLIYNLGRTEVHGFMLASALHWLKHFHIDGLRVDAVASMLYRDYSRKAGEWVPNIHGGRENLEAIEFLRHLNDVVALEAPGALMIAEESTAWPGVSQSTQQGGLGFAYKWNMGWMHDSLHYIQQDPMYRAHHHNELSFGLVYAWSERFILPISHDEVVHGKHSLIDKMPGDRWQKFANLRAYLSFMWAHPGKKLLFMGCEFGQWREWNHDQQLDWYLLQYHDHQGVQKLVGDLNRLYREEPALHDQDDVAQGFQWLIGDDATNSVYAWLRWSKAGKPLLVVANFTPVPRPGYRIGVPFSGTWQEVLNSDADTYAGSNYGNGGGVMTQALPSHGQEVSLALNLPPLGVLILQPT
>NZ_CP013861.1|WP_010656101.1|1949545_1950346_-|endonuclease/exonuclease/phosphatase-family-protein
MTLDIAGNDIESPAPGAVPDVHRMKVLTVNMHKGFTAFNRRFILPELRDAVRSTSADLVFLQEVLGEHEKHASRYDAWPQVSQYEFLADSMWTDYAYGRNAVYPDGHHGNAVLSKYPIKSYRNLDVSITGPERRGLLHCVLDVPGHENVHAICVHLSLLESHRQLQIVLLNQLLKSLPPDDPVIIAGDFNDWKEQGNAMLSQRDDLHEVFERHHGKLARTYPARWPLLRLDRIYLRNASSHHPTILGHKPWPHLSDHLPLAVEVHL
>NZ_CP013861.1|WP_010656100.1|1950407_1951109_-|glycosyltransferase
MIGILIPAHNEQDLLAQCLQAALTAARHPELNGEAVKVTLVLDSCSDGSADIAAKYDIKVLHIKARNVGVARGTGAQWLLEQGARWISCTDADSLVADDWLVAQLALNTDAVCGTVRIDDWGPLVDAPARARYLAAYEARDGHRHIHGANLGFSARAYRDAGGFQPLACHEDVHLVKRLQASGASIAWSHRPRVTTSARLDCRARGGFGDYLKSLLIAPAADQHQPDPRPGAL
>NZ_CP013861.1|WP_010656099.1|1951105_1951705_-|methyltransferase-domain-containing-protein
MGVSTAFFDQLYEQNPDPWAFRERWYEQRKRALTLASLPRQHYGSIYELGCANGELSAGLAQRTDRLLCCDAAARAVELAQQRLSHCPNVEVRQSRLPADWASGRFDLIVLSELGYYLDANELQSMIERIAGSLAEQGQVLACHWRPAIEGCALTGDQVHGLLHAGLGLSRLAQHLEDDFVLEVWGLDPMSVASQEGLR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP013861_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013861_3

4004188-4004294

Orphan

Consensus_repeat	Method
ATTAGCGCCTACAAAAACAGTGTGGGAGCTGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013861_3

>merge|NZ_CP013861|3|4004188-4004294|CRISPRCasFinder
ATTAGCGCCTACAAAAACAGTGTGGGAGCTGGCAGGCTAACCCCCCATCGCTGGCAAGCCAGCTCCCACGGGGTATTAGCGCCTACAAAAACAGTGTGGGAGCTGGC

>NZ_CP013861|3|3|4004188-4004294|CRISPRCasFinder
ATTAGCGCCTACAAAAACAGTGTGGGAGCTGGC	AGGCTAACCCCCCATCGCTGGCAAGCCAGCTCCCACGGGGT
ATTAGCGCCTACAAAAACAGTGTGGGAGCTGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013861.1\|WP_003440394.1\|4003749_4004154_+\|SufE-family-protein	unknown	unknown	gnl\|CDD\|376883
NZ_CP013861.1\|WP_003440376.1\|4008106_4009258_+\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265
NZ_CP013861.1\|WP_010655967.1\|4009257_4010067_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|236841
NZ_CP013861.1\|WP_003440371.1\|4010147_4010528_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013861.1\|WP_010655965.1\|3997904_3999104_+\|succinyldiaminopimelate-transaminase	unknown	unknown	gnl\|CDD\|236393
NZ_CP013861.1\|WP_003440403.1\|4001054_4001417_+\|ArsC-family-reductase	unknown	unknown	gnl\|CDD\|239333
NZ_CP013861.1\|WP_003440422.1\|3993209_3993953_-\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NZ_CP013861.1\|WP_010655969.1\|4011088_4013602_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsB	unknown	unknown	gnl\|CDD\|235325
NZ_CP013861.1\|WP_003440366.1\|4013688_4014090_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378225
NZ_CP013861.1\|WP_010655970.1\|4014178_4017238_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP013861.1\|WP_010655966.1\|4002547_4003753_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|333967
NZ_CP013861.1\|WP_003440391.1\|4004331_4005141_-\|tRNA-cyclic-N6-threonylcarbamoyladenosine(37)-synthase-TcdA	unknown	unknown	gnl\|CDD\|224100
NZ_CP013861.1\|WP_003440407.1\|3999181_4000825_-\|Na+/H+-antiporter	unknown	unknown	gnl\|CDD\|129911
NZ_CP013861.1\|WP_081481297.1\|3994244_3995108_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP013861.1\|WP_003440388.1\|4005416_4008008_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133057
NZ_CP013861.1\|WP_010655964.1\|3995175_3997878_+\|[protein-PII]-uridylyltransferase	unknown	unknown	gnl\|CDD\|234709
NZ_CP013861.1\|WP_003440361.1\|4017243_4018344_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP013861.1\|WP_010655968.1\|4010638_4010848_-\|cold-shock-domain-containing-protein	unknown	unknown	gnl\|CDD\|278729
NZ_CP013861.1\|WP_003440400.1\|4001453_4002488_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|211834
NZ_CP013861.1\|WP_003440424.1\|3992133_3993003_-\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491

Protein	Function_ID	Function_description	E-value
NZ_CP013861.1\|WP_003440394.1\|4003749_4004154_+\|SufE-family-protein	gnl\|CDD\|376883	pfam02657, SufE, Fe-S metabolism associated domain. This family consists of the SufE-related proteins. These have been implicated in Fe-S metabolism and export).	1.45612e-53
NZ_CP013861.1\|WP_003440376.1\|4008106_4009258_+\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_CP013861.1\|WP_010655967.1\|4009257_4010067_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|236841	PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional.	8.80717e-89
NZ_CP013861.1\|WP_010655965.1\|3997904_3999104_+\|succinyldiaminopimelate-transaminase	gnl\|CDD\|236393	PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional.	0
NZ_CP013861.1\|WP_003440403.1\|4001054_4001417_+\|ArsC-family-reductase	gnl\|CDD\|239333	cd03035, ArsC_Yffb, Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.	2.07448e-59
NZ_CP013861.1\|WP_003440422.1\|3993209_3993953_-\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	2.59447e-168
NZ_CP013861.1\|WP_010655969.1\|4011088_4013602_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsB	gnl\|CDD\|235325	PRK04974, PRK04974, glycerol-3-phosphate 1-O-acyltransferase PlsB.	0
NZ_CP013861.1\|WP_003440366.1\|4013688_4014090_+\|hypothetical-protein	gnl\|CDD\|378225	pfam09619, YscW, Type III secretion system lipoprotein chaperone (YscW). This entry is encoded within type III secretion operons. The protein has been characterized as a chaperone for the outer membrane pore component YscC. YscW is a lipoprotein which is itself localized to the outer membrane and, it is believed, facilitates the oligomerization and localization of YscC.	2.34034e-38
NZ_CP013861.1\|WP_010655970.1\|4014178_4017238_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP013861.1\|WP_010655966.1\|4002547_4003753_+\|cysteine-desulfurase	gnl\|CDD\|333967	pfam00266, Aminotran_5, Aminotransferase class-V. This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-.	1.02982e-171
NZ_CP013861.1\|WP_003440391.1\|4004331_4005141_-\|tRNA-cyclic-N6-threonylcarbamoyladenosine(37)-synthase-TcdA	gnl\|CDD\|224100	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism].	4.22051e-128
NZ_CP013861.1\|WP_003440407.1\|3999181_4000825_-\|Na+/H+-antiporter	gnl\|CDD\|129911	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309., Na+/H+ antiporter, bacterial form. The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36) The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals. Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in (1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles. This model is specific for the bacterial members of this family. [Transport and binding proteins, Cations and iron carrying compounds].	4.28661e-106
NZ_CP013861.1\|WP_081481297.1\|3994244_3995108_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	6.77067e-177
NZ_CP013861.1\|WP_003440388.1\|4005416_4008008_+\|glycosyltransferase	gnl\|CDD\|133057	cd06435, CESA_NdvC_like, NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.	1.15543e-145
NZ_CP013861.1\|WP_010655964.1\|3995175_3997878_+\|[protein-PII]-uridylyltransferase	gnl\|CDD\|234709	PRK00275, glnD, PII uridylyl-transferase; Provisional.	0
NZ_CP013861.1\|WP_003440361.1\|4017243_4018344_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	5.52888e-76
NZ_CP013861.1\|WP_010655968.1\|4010638_4010848_-\|cold-shock-domain-containing-protein	gnl\|CDD\|278729	pfam00313, CSD, 'Cold-shock' DNA-binding domain.	2.8133e-27
NZ_CP013861.1\|WP_003440400.1\|4001453_4002488_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|211834	TIGR03536, DapD_gpp, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.	0
NZ_CP013861.1\|WP_003440424.1\|3992133_3993003_-\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	1.50805e-127

>NZ_CP013861.1|WP_003440394.1|4003749_4004154_+|SufE-family-protein
MTLPADAQAALDSFEHCTGWEQRARLLMQWGQRLPELDLADKNEANRVHGCESQVWLLGELRDGHWQFAASSDARLIRGLVALLLARVNGLSGEQLQQVDLPEWFNQLGLSRQLSPSRSNGLNAVLQRMRELAG
>NZ_CP013861.1|WP_010655966.1|4002547_4003753_+|cysteine-desulfurase
MLLPSPWRADFPAIAAMQRQDQTYLDNAATTQKPQALLDALQHYYANGAANVHRAQHLPGAHATQAFENTRQKVTQWLNASDCGQIVFTHGATSALNLLAYGLEHQFTQGDEIVISALEHHANLLPWQQLAKRKKLTLVILPLDADGVIDLDAAARLITPRTRLLAVSQLSNVLGVWQPLPELLALAKAQNALTVVDGAQGIVHGRHDVNTLGCDFYVFSSHKLYGPDGLGVLFGRHAALARLQHWQFGGEMVQDADYQSATFRPAPLGFEAGTPPIASVIGLGATLSYLSTLDQAAVEAHEAALHSLLIDGLTQRQGVRLLGSPQLALVSFVVDGVHNADLAHLLTEQGIAVRAGHHCAMPLLKSFGLAGAIRVSLALYNDSDDLQRFFEALDQALELLQ
>NZ_CP013861.1|WP_003440400.1|4001453_4002488_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MSTTLFSAAFGVGTQNRQGAWLEVFYAQPLLNPSAELIAAIAPILGYTGGNQAITFSTAQAAQMAEIAKPIDTAQAALLTRLAESHKPLVATLLAEDAALTSTPEAYLKLHLLSHRLVKPHGLSLAGVFPLLPNVAWTSQGAIDLGELAERQLEARLRGELLEVFSVDKFPKMTDYVVPAGVRIADSARIRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGCSTMGTLSGGGNIVIKVGEGCLIGANAGIGIPLGDRNTVESGLYVTAGTKVALLDENNQLVKVVKARDLAGQPDLLFRRNSETGAVECKTHKSAIELNEALHAHN
>NZ_CP013861.1|WP_003440403.1|4001054_4001417_+|ArsC-family-reductase
MTDSNKTLHLFGIKACDTMKKARTWLDEHAVRYDFHDYKTSGIDREHLTQWCNEHGWQVVLNRAGTTFRKLDDERKADLDQAKAIELMLAQPSMIKRPVLDLGDKTLIGFKPDLYAAALL
>NZ_CP013861.1|WP_003440407.1|3999181_4000825_-|Na+/H+-antiporter
MQTAYTVLILLMLVGVSRLLGRVIPLPLPLVQIAAGAVLAWPTLGLHVALNPELFLFLFLPPLLFSDGWRMPKREFWRLRGPILTLAVGLVLFTVVGAGYFIHWLLPSIPLPVAFALAAVLSPTDAVAVSAIAQNRLPAPLMHMLQGEALMNDATGLVTFKFALAAAITGVFSLANASVTFLLVACGGLAIGVALSWVVGRMRSWMITRGWDDPATHVVFMLLLPFAAYVLAERLGASGILSAVAAGMMQSWLDLLPRQTSTRLLNRSVWSLLEFAFNGLIFLLLGLQLPDIIKAVVRLEPTLWPTLMYRCLDVVVIFLVLLALRFIWVQSIWRLSGLLRRWRGKGELTMVPTARSCWLLTVGGVRGAVTLAGVMSVPLLISEGLDFPERELLIFIAAGVILLSLIVACIALPLLLRGIPKSQDDAMRAEVREAWRRTAEAAIHALEAEEVVEPEKQDAALAALAAELKARIMSEYRHQLEVFNDSAEAQALASQMDHLESRLRLKALRAQRLELYSLRRHHEIGDDVLSEVLRDLDLSEANLGTVK
>NZ_CP013861.1|WP_010655965.1|3997904_3999104_+|succinyldiaminopimelate-transaminase
MNNALNQLQPYPFEKLRALLGSVQPNTDKRPIALSIGEPKHRSPDFVAKALADNLDQMAVYPTTLGIPALREAIGGWAERRFQVPKGWLDPARNILPVNGTREALFAFTQTVVNRGDDALVISPNPFYQIYEGAAFLAGAKPHYLPCLAEHGFNPDFDAVAAETWDNCQILFLCSPGNPTGALIPLDTLKKLIALADKHDFVIAADECYSELYFDEQTPPVGLLSACVDLGREDFKRCVVFHSLSKRSNLPGLRSGFVAGDAEILKAFLLYRTYHGCAMPVQTQLASIAAWNDEAHVRTNRDLYREKFDAVLEILGPVLDVQRPDGGFYLWPNVEGDDADFCRDLFAEEQVTVVPGSYLSREVDGFNPGAGRVRMALVAPLAECVEAAERICEFILRRK
>NZ_CP013861.1|WP_010655964.1|3995175_3997878_+|[protein-PII]-uridylyltransferase
MPQVDPELFDRGQFQAELALKASPIAAFKKAIRQAREALDERFRSGRDIRRLIEDRAWFVDNILQQAWDQFSWSNQADIALVAVGGYGRGELHPYSDIDLLILLDNADHEIFRDSIERFLTLLWDIGLEVGQSVRSVDECAEQARADLTIITNLMESRTVAGPERLRQRMLDVTSTAHMWPSKDFFLAKRAEQKARHHKYNDTEYNLEPNVKGSPGGLRDIQTILWVARRQYGTLNLRALAGEGFLVESEHALLASSQEFLWKVRYALHMLAGRAEDRLLFDHQRSIAELLGFTGEDTKQTIENFMQQYYRVVMSIAQLSDLIIQHFEEVILAPDDAAPPAPLNSRFQLHDGYIEATSDHVFKRTPFAMLEIFLLMAQHPEIKGVRADTIRLLREHRYLIDDDFRKDIRNTSLFIELFKCKIGIHRNLRRMNRYGILGRYLPEFGFIVGQMQHDLFHIYTVDAHTLNLIKHLRKLQYTQVSEKFPLASKLMAKLPKPELIYLAGLYHDIGKGRHGDHSEIGAVDAEAFCIRHQLPQWDTRLIVWLVQNHLVMSTTAQRKDLSDPQVIHDFAQIVGDETRLDYLYVLTVADINATNPTLWNSWRASLLRQLYTETKRALRRGLENPVDREEQIRQTQSAALDILVRNGNDQDDVEQLWSQLGDDYFLRHTSADVALHTEAILQQPADGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSKFTLDTYIVLDNDGETIGNNPARVERIRKGLTEALRNPDDYPNIIQRRVPRQLKHFAFPPQVTIHNDAQRPVTVLELSAPDRPGLLARIGMIFLEFDLSLQNAKIATLGERVEDVFFVTDENNQPLSDPQLCMRLQEAIVEQLTVDKDSTPEPWRLSI
>NZ_CP013861.1|WP_081481297.1|3994244_3995108_+|type-I-methionyl-aminopeptidase
MAFLWRCAAAKHPRNPDDERQPAKRARMTVTLKTPEDIAKMRIAGKLAAEVLEMIAEHVKPGVTTEELDRICHDYIVNVQQAIPAPLNYKGFPKSICTSINHVVCHGIPGDKVLKDGDTLNIDVTVIKDGYHGDTSRMFHVGKVPVWAERLSQVTQECMYKAIEIVKPGCRLGDIGEVIQKHAEKNGFSVVREFCGHGIGKVFHEEPQILHYGRAGTGMELKAGMTFTIEPMINQGKADTKVLGDGWTAITKDRKLSAQWEHTLLVTETGYEIFTLRSDDTIPRVSA
>NZ_CP013861.1|WP_003440422.1|3993209_3993953_-|30S-ribosomal-protein-S2
MSQVNMRDMLKAGVHFGHQTRYWNPKMGKYIFGARNKIHIINLEKTLPMFNEALTFVERLAQGKNKILFVGTKRSAGKIVAEEATRCGSPYVDHRWLGGMLTNFKTIRASIKRLRDLEIQAEDGTFAKLTKKEALMRTRDLEKLDRSLGGIKDMGGLPDALFVIDVDHERIAITEANKLGIPVIGVVDTNSSPEGVDYIIPGNDDAIRAIQLYMGAMADAVIKGRNHVAGGTDVFVEEAPAAAVVEG
>NZ_CP013861.1|WP_003440424.1|3992133_3993003_-|elongation-factor-Ts
MAEITAALVKELRERTGEGMMDCKKALTKAGGDIEKAIDDMRASGAIKAAKKAGNVAAEGAIAVKVAEDGKSAVILEVNSQTDFLALQDDFKKFVADSVEKAFAEKLTDAAPLIASQEADRLVLVGKVGENVNIRRLARIEGDVVDAYLHGNKIGVVVALKGGNAELARDIAMHVAASNPEFLLPSQVSADAIEREKTVFMSLNEDKIKGKPAEIVEKMVAGRISKFLAEASLVEQAFVKNPEIKVGELAKKAGAEIVSFTYFKVGDGIEKPVDDFAAEVAAQVAASKQ
>NZ_CP013861.1|WP_003440391.1|4004331_4005141_-|tRNA-cyclic-N6-threonylcarbamoyladenosine(37)-synthase-TcdA
MSTEDPRFAGVARLYGIEGLERLRAAHVAIVGVGGVGSWAAEAIARCGVGEISLFDLDDVCVSNSNRQLHALSTTIGRDKVEVMAERLRQINPDCKVHAVADFVTRETMAEYITPDIDCVIDCIDSVNAKAALIAWCKRRKIQIITTGGAGGQIDPTLIQVCDLNRTFNDPLASKVRSTLRRDYGFSRTMTRHYSVPCVFSTEQLRYPKPDGSICLQKSFVGDGVKLDCAGGFGAVMMVTATFGMVAATKAVDKIVAGVRRPSERVKPA
>NZ_CP013861.1|WP_003440388.1|4005416_4008008_+|glycosyltransferase
MSSRKFGLNLVVVLAIAALFTGFWALINRPVSAPNWPEQISGFSYSPFQQGQYPQKDQYPTDDEMRRDLEIISKLTDNIRTYSVDGTLGDIPKLAEEFGLRVTIGIWISPDLERNEREIQKAIELANNSRSVVRVVVGNEALFREEITPEDLIVLLDRVRAAVKVPVTTSEQWHIWEKYPQLAKHVDLIAAHILPYWEFIPVDKAGEFVLDRARDLKKMFPKKPLLLSEVGWPSNGRMRGGADATPADQAIYLRTLVNTLNRRGYNYFVIEAFDQPWKASDEGSVGAYWGVYNAARQQKFNFEGPVVAIPQWRVLAIGSVVMGLLSLALLLIDGSALRQRGRTFLTFTAFLCGSVLVWIGYDYSQQYSTWFSLTVGILLGLGAFGVFIVLLTEAHELAEAVWIRKRRREFLPVEHEDAYRPKVSIHVPCYNEPPEMVKQTLDALANLDYPDFEVLIIDNNTKDPAVWEPVRDYCATLGPRFKFFHVAPLAGFKGGALNYLIPHTAPDAEVIAVIDSDYCVDRNWLKHMVPHFADPKIAIVQSPQDYRDQNESTFKKLCYSEYKGFFHIGMVTRNDRDAIIQHGTMTMTRRSVLEELGWADWCICEDAELGLRVFEKGYSAAYSHNSYGKGLMPDTFIDFKKQRFRWAYGAIQIIKRHASSLLRGKDTQLTRGQRYHFLAGWLPWVADGMNIFFTVGALLWSAAMIIVPTRVDPPLLIFAIPPLALFVFKVGKIIFLYRRAVGVNLKDAFAAALAGLALSHTIAKAVLYGFFTTSIPFFRTPKNADNHGFWVAISEAREEVFIMLLLWGAALGIFLVQGLPSNDMRFWVVMLLVQSLPYLAALIMAFLSSLPKPVEAPEEHPAV
>NZ_CP013861.1|WP_003440376.1|4008106_4009258_+|succinyl-diaminopimelate-desuccinylase
MTAHADLSPTLQLACDLIRRPSVTPIDADCQKLMMQRLGDAGFKLEPMRIEDVDNFWATHGKNEGPVLCFAGHTDVVPTGPVQAWQNDPFDALIDEHGMLCGRGAADMKGSLASMLVAAERFVADYPDHKGSVAFLITSDEEGPAHHGTKAVIERFKARNERLDWCIVGEPSSTTLVGDVVKNGRRGSLGAKLTVRGVQGHVAYPHLAKNPIHLAVPALTELAAEHWDNGNAFFPPTSFQISNLNSGTGATNVIPGDLVAVFNFRFSTESTVEGLQKRVADILDKHGLDWHIDWALSGLPFLTEPGALLDAVSSSIKQVTGRETKASTSGGTSDGRFIATLGTQVVELGPVNATIHQVNERVLASDLDVLTEIYYQTLIRLLA
>NZ_CP013861.1|WP_010655967.1|4009257_4010067_+|methyltransferase-domain-containing-protein
MLACPICSQPLSAVDNGVACPTGHRFDRARQGYLNLLPVQHKNSRDPGDNQAMVEARRDFLNAGHYAPVAKRLAELAAERAPQRWLDIGCGEGYYTAQIAEALPNADGYALDISREAVKRACKRNPHLTWLIASMARVPLADASCQFLASVFSPLDWLEAKRLLSPGGGLMRVGPTRGHLMELRERLYDEVRDYADDKHLALVPEGMQLQHSETLEFVLSLSEPKDRANLLAMTPHGWRASAERRAQVIDHPQPLVVTVSMRYDYFILQ
>NZ_CP013861.1|WP_003440371.1|4010147_4010528_+|hypothetical-protein
MRQPDIEIYLKEAKAGHEHVVTWLSEALGPCTPWVKKGQVWKCTAGDIPVTWMPNAVGKWNSLFLDSDKTPWDDDIACAQAAFKALNVEVRCAPGTWEEEQGEADADRWIRISEDGQEEITWKTGA
>NZ_CP013861.1|WP_010655968.1|4010638_4010848_-|cold-shock-domain-containing-protein
MSTRVTGSVKWFNDAKGYGLIQCADGADVFVHYRAIRGEGHRSLAEGQQVEYTQVKGDKGLQAEDVVGL
>NZ_CP013861.1|WP_010655969.1|4011088_4013602_+|glycerol-3-phosphate-1-O-acyltransferase-PlsB
MTRSPFRRLVFGALRRLLYLWVRSETINQSSLTLNLDRSRPVFYVLQSPSLTELAVVDAECTKAGLPRPVLPVAVGSMIEPEAFFYLTPEPDWLGRQDKRGAPPALTRLVDALTLNPGEDAQIIPVSVFWGQSPDSESSPWKLLFADSWAVTGRLRRLLRILILGRKTRVQFSAPIHLRELIDHNKGHERTVRMAQRILRVHFRNLKTATIGPDLSHRRNLVKGLIKEPAVRQAIVDEAERENISADKAKALALRYANEIASDYTYTAIRFFEVILSWFWNKIYDGVKIHNIEGVQNVAQGHEIVYVPCHRSHIDYLLLSYLLFRNGLTPPHIAAGINLNMPLMGRLLRRGGAFFMRRTFKGNPLYTSVFNEYMHTLFTKGFPVEYFVEGGRSRTGRMLQPKTGMLAITVRSFLRSSRMPIVFVPVYIGYERVLEGRTYLGELRGASKKKESVFDIFKVIGALKKQKFGQVAVNFGEPIKLAEFLDGEQPGWRQQELAPSYRPEWLHGATNRLGEKVARHLNEAAAINPVNLVALVLLSTSKLALDDRAMARVLDLYLALLRRVPYSPHTTVPEGDGQALIEHVKSMDLLSEQSDALGKVLYLDEQNAVLMTYYRNNVLHIFALPALLASFFQSSSRMTREQILRYTHALYPYLQSELFIRWSEDELDAVVDQWLEAFVEQGLLRFENAVYLRPAPSSRHFVLLTLLSRSIAQTLQRFYMAISLLLNSGQNTLSAEELEDLCTMMAQRLSILHGLNAPEFFDKSLFRHFIQSLLEEDVLRRDANGKLSYHELLGELAEGAAKRVLPAEIRLSIRQVALHRSEDPADQAPLSLEKPLK
>NZ_CP013861.1|WP_003440366.1|4013688_4014090_+|hypothetical-protein
MKKVLLLSLTALLGACSSMTPAPQAALDGEVFYLQRIALPPGATLEVSLQDVSLADAPAVTLAKQSGPVKGQVPLPFHLSYDPAEVKPGHTYAVSARIEDNGQLLFITTERNSVDLNAKTQQPIRLRVDQVQQ
>NZ_CP013861.1|WP_010655970.1|4014178_4017238_-|efflux-RND-transporter-permease-subunit
MGFNLSAWALRNRQIVLFLMLLLAIVGGLSYTKLGQSEDPPFTFKAMVIRTLWPGASAEEVSRQVTERIEKKLMETGDYERIVSFSRPGESQVTFMARDSMPSARIPELWYQVRKKISDIRQNLPPDIQGPFFNDEFGTTFGNIYSLSGEGFDYGVLKDYADRIQIQLQRVKDVGKVELLGLQDEKIWIELSNLKLATLGLPLATVQQALKEQNAVSTAGFFETPTERVQLRVSGNFKTVEQIEGFPIRVGERTLRISDVADVHRGFNDPPAPRMRFMGQDAIGLAVAMKDGGDILVLGKALETEFERLQQNLPAGMQLSKVSDQPAAVKSSVGEFVQVLVEALAIVLLVSFFSLGVRTGLVVALTIPLVLAMTFAAMYYLGIGLHKISLGALVLALGLLVDDAIIAVEMMAIKMEQGYDRLKAASFAWTSTAFPMLTGTLITAAGFLPIAMAQSSTGEYTRSIFQVVTIALLASWIAAVVFVPYLGALLLPDLAKIHGAKHGSATPDPYGTPFYQRVRRLVEWCVRRRKTVIVLTVLLFLGSVVLFRFVPQQFFPASSRLELMVDLKQAEGVSLSNTNEQVKHLESLLKDHPGIANYVAYVGTGSPRFYLPLDQQLPAASFAQFVVLAKSIEERETLRTWLIETLDQQFPGVRSRVTRLETGPPVGYPVQLRVTGEHIEEVRALARKVAARVRENPHVVNVHLDWEEPSKVVYLNVDQDRARALGVSTANLSHFLQSTLLGSSVSQYREDNELIEILLRGTPHERTELSLLPSLAVPTDNGQSVALSQIATLEYGFEEGIIWHRNRLPTVTVRADIYGKEQPATLVQQILPTLQDVRAELPDGYLLEVGGTVEDSSRGQDSVKAGVPLFIVVVLTLLMVQLRSFSRMVMVFLTAPLGLIGVTLFLLVFGKPFGFVAMLGTIALSGMIMRNSVILVDQIEQDKAAGMDPWQAIIEATVRRFRPIVLTALAAVLAMIPLSRSVFFGPMAVAIMGGLIVATALTLLFLPALYAAWFRVKKV
>NZ_CP013861.1|WP_003440361.1|4017243_4018344_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MLRHALPRAVPVCLVFLLSACGHEEPAQISISPAMVEQPQPSALASQSYPGEVRARFDPQLAFRIGGKVTRRLVDEGERVKANQPLAELDPQDVRLQLEATRAQVAAGQANLNLVRAERDRYKTLLDRQMVSRSQFDNAENLYRSGEARLQQLKAEQDVASNQASYAVLRAPQDGVIAQRQVEVGQVVAAGQTVFTLAADGEREVLISLPEQAFGRFKIGLPVSVELWSQPDQRFSGRIRELSPAADPRSRTFAARIAFTSGKVPAELGQSARVFIQSEGVSPLSVPLSALSAENGATYVWRVGPGNKLEQVPVRTGPFGEKNVPVLEGLKADDWIVSAGVHVLHPGQQVRPVDRSNRTINVAVKE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP013861_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013861_4

4399392-4399750

Orphan

Consensus_repeat	Method
TGTGGGAGCTGGCTTGCCAGGGATTGGCTGTGTGGGCATGCCTTCTCC	PILER-CR

4 spacers

The CRISPR arrays of NZ_CP013861_4

>merge|NZ_CP013861|4|4399392-4399750|PILER-CR
TGTGGGAGCTGGCTTGCCAGGGATTGGCTGTGTGGGCATGCCTTCTCCCACAGGGGACTTGTGAAGCTGAAAGCTTTTTGTGGGAGCTGGCTTGCCAGGGATTGGCTGTGTGGGCATGCCTTCTCCCACAGGGGGCTTGTGAGGCTGAGAGCTTCTTGTGGGAGCTGGCTTGCCAGGGATTGGCTGTGTGGCCATGCCTTCTCCAACAGGGCGCTTGTGAGGCTGAGAGCTTCTTGTGGGAGCTGGCTTGCCAGGGATTGGCTGTGTGGGCATGCCTTCTCCCACTGGGACTTGTGAAACTGAAAGCTTCCTGTGGGAGCTGGCTTGCCAGGGATTGGCTGTGTGGGCATGCCCTCTCC

>NZ_CP013861|4|1|4399392-4399750|PILER-CR
TGTGGGAGCTGGCTTGCCAGGGATTGGCTGTGTGGGCATGCCTTCTCC	CACAGGGGACTTGTGAAGCTGAAAGCTTTT
TGTGGGAGCTGGCTTGCCAGGGATTGGCTGTGTGGGCATGCCTTCTCC	CACAGGGGGCTTGTGAGGCTGAGAGCTTCT
TGTGGGAGCTGGCTTGCCAGGGATTGGCTGTGTGGCCATGCCTTCTCC	AACAGGGCGCTTGTGAGGCTGAGAGCTTCT
TGTGGGAGCTGGCTTGCCAGGGATTGGCTGTGTGGGCATGCCTTCTCC	CACTGGGACTTGTGAAACTGAAAGCTTCC
TGTGGGAGCTGGCTTGCCAGGGATTGGCTGTGTGGGCATGCCCTCTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013861.1\|WP_010656941.1\|4394298_4395597_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP013861.1\|WP_003439420.1\|4410625_4411216_-\|TerD-family-protein	unknown	unknown	gnl\|CDD\|376767
NZ_CP013861.1\|WP_010657265.1\|4409414_4410629_-\|tellurium-resistance-protein-TerA	unknown	unknown	gnl\|CDD\|226595
NZ_CP013861.1\|WP_003439428.1\|4407245_4407821_-\|TerD-family-protein	unknown	unknown	gnl\|CDD\|376767
NZ_CP013861.1\|WP_003439418.1\|4411289_4411964_-\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NZ_CP013861.1\|WP_003439424.1\|4408898_4409348_-\|tellurite-resistance-TerB-family-protein	unknown	unknown	gnl\|CDD\|226316
NZ_CP013861.1\|WP_003439451.1\|4389462_4390374_-\|5-dehydro-4-deoxyglucarate-dehydratase	unknown	unknown	gnl\|CDD\|235141
NZ_CP013861.1\|WP_003439429.1\|4406629_4407208_-\|TerD-family-protein	unknown	unknown	gnl\|CDD\|376767
NZ_CP013861.1\|WP_010657266.1\|4411960_4412920_-\|HpcH/HpaI-aldolase/citrate-lyase-family-protein	unknown	unknown	gnl\|CDD\|379744
NZ_CP013861.1\|WP_003439453.1\|4387942_4389307_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326
NZ_CP013861.1\|WP_010656940.1\|4396790_4398149_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP013861.1\|WP_003439448.1\|4391607_4392384_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273922
NZ_CP013861.1\|WP_003439449.1\|4390748_4391495_-\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_CP013861.1\|WP_010657262.1\|4400988_4401615_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP013861.1\|WP_010657261.1\|4400369_4400852_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP013861.1\|WP_003439446.1\|4392478_4394221_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|224490
NZ_CP013861.1\|WP_010657264.1\|4407847_4408891_-\|TerC/Alx-family-metal-homeostasis-membrane-protein	unknown	unknown	gnl\|CDD\|274743
NZ_CP013861.1\|WP_003439441.1\|4395648_4396737_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP013861.1\|WP_010656944.1\|4386377_4387931_-\|galactarate-dehydratase	unknown	unknown	gnl\|CDD\|274491
NZ_CP013861.1\|WP_003439457.1\|4385274_4386198_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176117

Protein	Function_ID	Function_description	E-value
NZ_CP013861.1\|WP_010656941.1\|4394298_4395597_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	5.54415e-68
NZ_CP013861.1\|WP_003439420.1\|4410625_4411216_-\|TerD-family-protein	gnl\|CDD\|376767	pfam02342, TerD, TerD domain. The TerD domain is found in TerD family proteins that include the paralogous TerD, TerA, TerE, TerF and TerZ proteins It is found in a stress response operon with TerB and TerC. TerD has a maximum of two calcium-binding sites depending on the conservation of aspartates. It has various fusions to nuclease domains, RNA binding domains, ubiquitin related domains, and metal binding domains. The ter gene products lie at the centre of membrane-linked metal recognition complexes with regulatory ramifications encompassing phosphorylation-dependent signal transduction, RNA-dependent regulation, biosynthesis of nucleoside-like metabolites and DNA processing linked to novel pathways.	1.44776e-63
NZ_CP013861.1\|WP_010657265.1\|4409414_4410629_-\|tellurium-resistance-protein-TerA	gnl\|CDD\|226595	COG4110, COG4110, Uncharacterized protein involved in stress response [General function prediction only].	5.17687e-96
NZ_CP013861.1\|WP_003439428.1\|4407245_4407821_-\|TerD-family-protein	gnl\|CDD\|376767	pfam02342, TerD, TerD domain. The TerD domain is found in TerD family proteins that include the paralogous TerD, TerA, TerE, TerF and TerZ proteins It is found in a stress response operon with TerB and TerC. TerD has a maximum of two calcium-binding sites depending on the conservation of aspartates. It has various fusions to nuclease domains, RNA binding domains, ubiquitin related domains, and metal binding domains. The ter gene products lie at the centre of membrane-linked metal recognition complexes with regulatory ramifications encompassing phosphorylation-dependent signal transduction, RNA-dependent regulation, biosynthesis of nucleoside-like metabolites and DNA processing linked to novel pathways.	7.31731e-124
NZ_CP013861.1\|WP_003439418.1\|4411289_4411964_-\|HAD-IB-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.88482e-41
NZ_CP013861.1\|WP_003439424.1\|4408898_4409348_-\|tellurite-resistance-TerB-family-protein	gnl\|CDD\|226316	COG3793, TerB, Tellurite resistance protein [Inorganic ion transport and metabolism].	3.23645e-36
NZ_CP013861.1\|WP_003439451.1\|4389462_4390374_-\|5-dehydro-4-deoxyglucarate-dehydratase	gnl\|CDD\|235141	PRK03620, PRK03620, 5-dehydro-4-deoxyglucarate dehydratase; Provisional.	0
NZ_CP013861.1\|WP_003439429.1\|4406629_4407208_-\|TerD-family-protein	gnl\|CDD\|376767	pfam02342, TerD, TerD domain. The TerD domain is found in TerD family proteins that include the paralogous TerD, TerA, TerE, TerF and TerZ proteins It is found in a stress response operon with TerB and TerC. TerD has a maximum of two calcium-binding sites depending on the conservation of aspartates. It has various fusions to nuclease domains, RNA binding domains, ubiquitin related domains, and metal binding domains. The ter gene products lie at the centre of membrane-linked metal recognition complexes with regulatory ramifications encompassing phosphorylation-dependent signal transduction, RNA-dependent regulation, biosynthesis of nucleoside-like metabolites and DNA processing linked to novel pathways.	1.92726e-113
NZ_CP013861.1\|WP_010657266.1\|4411960_4412920_-\|HpcH/HpaI-aldolase/citrate-lyase-family-protein	gnl\|CDD\|379744	pfam15617, C-C_Bond_Lyase, C-C_Bond_Lyase of the TIM-Barrel fold. This family of TIM-Barrel fold C-C bond lyase is related to citrate-lyase. These genes are found in the biosynthetic operon, with other enzymatic domains, associated with the Ter stress response operon and are predicted to be involved in the biosynthesis of a ribo-nucleoside involved in stress response.	2.93345e-126
NZ_CP013861.1\|WP_003439453.1\|4387942_4389307_-\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.70624e-159
NZ_CP013861.1\|WP_010656940.1\|4396790_4398149_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	7.19921e-155
NZ_CP013861.1\|WP_003439448.1\|4391607_4392384_-\|hypothetical-protein	gnl\|CDD\|273922	TIGR02001, gcw_chp, conserved hypothetical protein, proteobacterial. This model represents a conserved hypothetical protein about 240 residues in length found so far in Proteobacteria including Shewanella oneidensis, Ralstonia solanacearum, and Colwellia psychrerythraea, usually as part of a paralogous family. The function is unknown.	1.02055e-30
NZ_CP013861.1\|WP_003439449.1\|4390748_4391495_-\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	6.57103e-56
NZ_CP013861.1\|WP_010657262.1\|4400988_4401615_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	3.88282e-28
NZ_CP013861.1\|WP_010657261.1\|4400369_4400852_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.47259e-40
NZ_CP013861.1\|WP_003439446.1\|4392478_4394221_-\|amidohydrolase	gnl\|CDD\|224490	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only].	2.94658e-142
NZ_CP013861.1\|WP_010657264.1\|4407847_4408891_-\|TerC/Alx-family-metal-homeostasis-membrane-protein	gnl\|CDD\|274743	TIGR03718, R_switched_Alx, integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.	1.73101e-115
NZ_CP013861.1\|WP_003439441.1\|4395648_4396737_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP013861.1\|WP_010656944.1\|4386377_4387931_-\|galactarate-dehydratase	gnl\|CDD\|274491	TIGR03248, galactar-dH20, galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0714).	0
NZ_CP013861.1\|WP_003439457.1\|4385274_4386198_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176117	cd08426, PBP2_LTTR_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.70654e-44

>NZ_CP013861.1|WP_010656940.1|4396790_4398149_-|glutamine-synthetase
MKGNLDRLSHWLKENKITEVECLISDLSGIARGKISPTNKFLNEQGMRLPESVLLQTVTGDYVEDDIYYELLDAADIDMHCRPDQDAVFIVPWASEPTAQVIHDTYDKQGNAIELSPRNLLKKVLSLYTARGWKPIVAPEMEFYLTQRSPDPDYPLKPPVGRSGRQETGRQSYSIEATNEFDPLFEDMYDWSEAQGLDLDTLIHEEGTAQMEINFRHGGALSLADQIIIFKRTMREAALKHDVSATFMAKPMTGEPGSAMHVHQSVVDLETGVSVFSNPDGSMSELFMHHIGGLQKYIPETLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSDPQNRRVENRLAGADANPYLALAASLLCGYAGMVEGIEPSAPVVGRGYERRNLRLPLTLEAALECMEQSDMAKKYLGERFTKGFVAVKRVEHENYKQVISSWEREFLLFSV
>NZ_CP013861.1|WP_003439441.1|4395648_4396737_-|polyamine-ABC-transporter-substrate-binding-protein
MKRIALKLTLAALCGLAGQASAQDVVNIYNWTDYIAEDTLVNFEHQTGIKPVYDVFDSNETLEGKLLAGRTGYDVVVPSNHFLGRQIKAGVFQKLDKSQIPNWKNLDPVLLARLEANDPGNEYAVPYLWGTNGIGYNVDKVKQVLGIDKIDSWSVLFEPENLKKLKSCGVAFMDSADEVMPSMLNYLGLDARSLKPEDYKVAEKKLQPLRPYISYFHSSKYVTDLANGDICIAFGYSGDVYQAIHRAQEAGNGVNIAYVVPKEGGNLWFDMLTIPADAKNPKQAHAFINYLLQPEVIAKISEYVGYANANTQATALMSDEITHNPSIYPPESVQAKLYVSSELPPDLMRWMTRSWNKFKSGR
>NZ_CP013861.1|WP_010656941.1|4394298_4395597_-|FAD-binding-oxidoreductase
MTSMLSLPHTYYSATRNQQLTCPVLEGQAEADVCIIGAGFTGLNTAIELAERGHSVIVLEAHQIAWGASGRNGGQLIRGVGHDLDAHEKTIGREGVRVLEHLGLDAVDLVRQRIEKHAIDCDLRWGFCELANTPRHVENLIAEQESLHRLGYRHKVELIGRADMHRVVGSERYLGGLTDEGSGHLHPLNLALGEARVAQQLGVRLYQSSAATRIEYGPQIRVHTASGVVRAKTLVLAGNAHLGELEPALSGKVLAAASYVIATEPLSEELASALIPDNRALCDQRVGLDYYRLSADRRLLFGGACHYSGRTLQDIAGYMRPKMLEVFPQLAGKRIDFQWSGMIGIGANRLPQIGRLQAHPNVFYAQAYAGHGINTTHMAARLVAQAISLEQSNGFELFSRVPHMTFPGGKHLRSPLLALGMLWYRLKEIAGH
>NZ_CP013861.1|WP_003439446.1|4392478_4394221_-|amidohydrolase
MKRFTPCVLAALFALPSLPALAAADLVFINGKVFTGVPGQPLVSAVAVENGKISKVGSDAEIQALADSGTQRVDLAGKVLMPGMIDTHSHPVSAGLNSLGANLLDEEKPLPELEQWIIEQDKAGTARSGDVINIAGVSSAYWEQARELGKIFNQGRWADQPLVLSGIDGHTGWANNAMLKRAKIDAALVKSLPANEQGYVGHEADFTPTGFFAESRWDQVRGQIPPASPEVMLKAAREAVKVNNQYGVTAWMDAASNAGPGDALFDFTATEQTLGVLPLYRQLAENGELTAHVAALMLTNSQSKPADLEVLARVMKQFEGVPNLTFPGIKVFADGILEYPGQTAAVIVPYKNSNKNGELLIDPAHFGELVVAAEKRGWIVHMHAVGDRAVRESLNGFEYARKLNPTPVAHSISHLQLVNPKEFPRFAQLGVIASMQLLWAIEESYTIDLVKPYISAFAYGYQYPAKSLQDAGAMISGASDWPVSSPNPWNAIGQAVTRDGPMGVLNAKERVDRQTMFYAYTINAAKTLGLAEQIGSLAPGKQADLIILDRDVFNVGDHELYDTKVLKTYFAGKPVNAPEA
>NZ_CP013861.1|WP_003439448.1|4391607_4392384_-|hypothetical-protein
MNAASVFMLAGLALSPLLSAQAVELNDQFSLLITPTLVSDYRANGLSQTKGDPAAQLAVTLSHASGLYAGIWTSNVNFGYGSKARQEIEYYAGYAWQISDNISLDTFYTRYEYPRESGYNQSDVQTVLDVYGVLLGGKYVTNMQGPEYEDENGEFHEGKKDEDLSTFFVGYRTLLPAEFGLELRYEYVDYKDKVFFSDSGKGRADYTDWEIKLTRDFVGVSWGLSYIDTSLSKAECQSYTGYDDVCGATLLASASKTF
>NZ_CP013861.1|WP_003439449.1|4390748_4391495_-|FadR-family-transcriptional-regulator
MENPNDVPRLPRKRRSLAQELVTVLSEQIRDGLLKRGDKLPTESAIMEAHGVSRTVVREAISRLQAAGQVETRHGIGTFVLDTPSPSGFRIDPATVVTLRDVLAILELRISLEVESAGLAAQRRSDEQLAAMRAALDALNENTARDGDAVASDFQFHLQIALSTGNRYFTDIMTHLGTSIIPRTRLNSAHLAHDDQQQYMHRLSREHEEIYTAIARQDSDAARAAMRLHLTNSRERLRHAHEEAEARG
>NZ_CP013861.1|WP_003439451.1|4389462_4390374_-|5-dehydro-4-deoxyglucarate-dehydratase
MNPQELKSILSSGLLSFPITDFNAQGDFHREGYIKRLEWLAPYGASALFAAGGTGEFFSLAASEYSQVIKTAVDTCANSVPILAGVGGSTRQAIEYAQEAERLGAKGLLLLPHYLTEASQDGVAAHVEAVCKSVKIGVIVYNRNVCRLTAPLLERLAERCPNLIGYKDGLGDIELMVSIRRRLGDRFSYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAMDFYHAIAREDHTTVGKIIDDFFLPYLDIRNRKAGYAVSIVKAGATISGYTAGPVRTPLTDLLPEEYEALAALIDKQGPQ
>NZ_CP013861.1|WP_003439453.1|4387942_4389307_-|MFS-transporter
MPATKPTHVRYLILLMLFVVTTINYADRATIAIAGSSLQKDLGIDAVTLGFIFSAFGWAYVAGQIPGGWLLDRFGSKKVYALSIFTWSLFTVLQGYVGEFGISTAVVALFMLRFLVGLAEAPSFPGNARIVAAWFPTAERGTASAIFNSAQYFATVIFAPLMGWIVYTFGWQHVFIVMGGIGIVFSLIWLKVIHSPRQHPMINEAEFRHIADNGGLVDMDQDKGTGKKVDGPKWDYIRQLLTNRMMLGVYLGQYCINGITYFFLTWFPVYLVQERGMTILKAGFIASLPAICGFIGGVLGGVISDYLLRKGHSLTFARKAPIIGGLLLSTSIVACNYVDIEWMVVGFMALAFFGKGVGALGWAVVSDTSPKQIAGLSGGLFNMFGNIASITTPIVIGYIISTTGSFKWALVFVGCNALVAVFSYLVIVGPIKRVVLKEPPVSGPQLTKLVSAHP
>NZ_CP013861.1|WP_010656944.1|4386377_4387931_-|galactarate-dehydratase
MTLIEHSDSPRTIRLHALDNVAVVVNDQGVPAGTELADGLVTLDFVPQSHKVTLVDIARGGAVIRYGQTIGYALQAIARGSWVNEDQLRMPTAPPLDSLPLATEVPVAQAPLEGFTFEGYRNADGTVGTRNILGITTTVQCVTGVLNHAVKRIRDELLPRYPHVDDVVALTHSYGCGVAISATDAYIPIRTVRNLARNPNLGGEALVISLGCEKLQAGQVMHDNDSSVDLSEPWLYRLQDSSHGFGEMVEQIMALAETRLKKLDLRRRETVPASELILGMQCGGSDAFSGITANPALGYASDLLLRAGATVMFSEVTEVRDAIYLLTSRAESRSVAQELVREMDWYDRYLAKGEADRSANTTPGNKKGGLSNIVEKSLGSIVKSGSSAINAVLGPGERFTGKGLIFCATPASDFVCGTLQLAAGMNLHVFTTGRGTPYGLAMAPVVKVSTRTELAQRWPDLIDIDAGRIATGRATIEELGWELFHYYLDVASGKKHTWAEQHKLHNDITLFNPAPIT
>NZ_CP013861.1|WP_003439457.1|4385274_4386198_+|LysR-family-transcriptional-regulator
MENSFQEKRLGYLHEVGFQGGIRKAADVLDVNPSVISRQIALLERSLHLPLLERRGRNVVLTEAGKLLSDHFSETQKRREVLSKQLNDLRYMRGGTVSLRIGPGMVADFVANELREFSKVYPDVFVDISSGDMSATLMMLVRGEVDMALSFGPIDNVSLQRRSFTRGPICAIVPEDHPLKEFTVIAVSELANHRLIGLSNAYGVQRYINKIFESENQVFTPAYRCNQQSVAITLCQAGLGVAFMTAQSLGQQGKDSKLLAIPLDHPIARASQCHILRSSDRRLHPASEHLWWLLVNYLERTQTEETL
>NZ_CP013861.1|WP_010657261.1|4400369_4400852_-|Lrp/AsnC-family-transcriptional-regulator
MTEQALSAIDARILAALQQDGRTTNQTLADGIGMSASPCWRRVRQLEEHKVIQGYRAVLDRRKIGLGVLVFVRVTIDRHSEVEARKFEQEVMALEDVVACYSIGGDADFLLQVVSRDLDTFADFAMSVIRRLTGIKEMQSMFVLKEIKPFVAWPVKGPKA
>NZ_CP013861.1|WP_010657262.1|4400988_4401615_+|LysE-family-translocator
MLEFSQVLTYTAALAVAAAIPGPGMAALVARSVSGGALPGFSLLLGLILGDLIYLSFAVFGLSLVAQHFDTLFVLVRICAALYLAYLAWQFWRAQPQPVNVGKPLNRQELFSAWLSGLTITLGNPKTIAFYLALLPLVINLESVSLQVWGVMLVPLTIAVLFMVGGLFVLGAVRIRHVLASPRAQRGLFRGAAIIMLGAAAAMLVQAA
>NZ_CP013861.1|WP_003439429.1|4406629_4407208_-|TerD-family-protein
MAVSLSKGGNVSLTKEAPGLTEVIVGLGWDPRVTDGTEFDLDASVFIVGESGKVLNDGSFVFYNNKTSPDGNVVHQGDNRSGAGEGDDEQINVNLAGLAQEAKKLAFAVTIHDADGRKQNFGQVSNAYIRVLNKADNKELARFDLSEDASTETAMVFGELYRNGEEWKFKAIGQGFAGGLAPLASNFGVNLG
>NZ_CP013861.1|WP_003439428.1|4407245_4407821_-|TerD-family-protein
MALSLSKGGNLSLSKEAPGMTKVLVGLGWDARSTDGQDFDLDASAFLLKADGKVRADSDFIFYNQLKSTDGSVEHTGDNRTGEGDGDDEAIKIDLSKVPAEIDKIAITVTIHEADARKQNFGQVRNAFIRLVNQDNNNEVVRYDLAEDASTETAMIFAELYRNGAEWKFRAVGQGFNGGLKPLAESFGLKF
>NZ_CP013861.1|WP_010657264.1|4407847_4408891_-|TerC/Alx-family-metal-homeostasis-membrane-protein
MENTAIGFPPTTIAVFVALAVIALAVDLFTHKSDKPVTLTNAAVWSVFWVLISLAFAGYLYYAHGPSVASLFVTGYALEKVLSVDNLFVFMAIFAWFKVPDALRHRVLYWGIIGAIVFRLIFVAIGTGLLAFGPWVEVLFAVVVAWTAIMMLRSKEEDEEEDYSKHMAYRFAQKLFPVWPKLHGHNFFVSRKELEKEITKPQNKGMTLAAKGTLFATPLFLCVVVVEVSDILFAFDSVPAVIAVSREPLIVYSAMMFAILGLRTMYFVLEALKRYLVHLEKSVIALLFFIAGKLALNATDHLFGHGYEIDPNTSLIVVLVVLAIGVVASIMFPGKEELSDVKNDTNA
>NZ_CP013861.1|WP_003439424.1|4408898_4409348_-|tellurite-resistance-TerB-family-protein
MLEWLKTNATAARDKLSAEVSKFKNREFMEAVVSGCALVAAADGNISSDEKQKMVGFIQNSNELKAFDVKDVIKSFNEVCDKFEFDQQIGRAEALKSIGQLRKKEDAARLLVRVCCAIGSADGNFDESERAACRTICNELGLNPGDFDL
>NZ_CP013861.1|WP_010657265.1|4409414_4410629_-|tellurium-resistance-protein-TerA
MSTLTPGANTAVTTGTLSVTISYSPVPGADLDVSAFLLNESGKVRGDNDMCFFGQQSVNNGAVKLAESAPGRSVFSLNLDAIDAAIDKVALTATIYENKARFDAFPQLNVSVSGGIEAPIPTVGMQETALILGEFYRRQGAWKFRCVAQGFAGGLAPLAQHFGVDIAAPAPAPAPTPAAPPAAPAPVVAPAAAPAPASKVNLSKITLDKQRPSISLDKKDGDFGEIKINLNWNRATPSGGGGFFASLRGKSGGIDLDVGCLYEMENGRKGAVQALGNAFGDFRDEPFIQLMGDDRTGSVSDGEWLRINGKEWRKMRRVLVYAFIYEGAPNWQATDGVITLYIPGEPPIEVRLSEEGGTKGMCAIALLENVGGSVKVNRRVEFFKGHSDMDKAFGWGMRWAAGSK
>NZ_CP013861.1|WP_003439420.1|4410625_4411216_-|TerD-family-protein
MAISLSKNQTISLEKEAGTGLKKIRMGLGWDPVKPSGFFAKLLNSDTAIDLDASCILLDSAGQPQDLVWFRQLKSTDGSIVHSGDNRTGEGDGDDESIQVNLEQLPASVKHLVFTVNSFTGQNFEAVENAYCRIVDELSGKELARFNLSDKGRHTGVVMAYLSRTAAGWDLTAVGTVANGRTAQDLSSEAAKAVRP
>NZ_CP013861.1|WP_003439418.1|4411289_4411964_-|HAD-IB-family-hydrolase
MNDVLNTPVKGKQVLSAFDFDGTLTYHDTFVPFLRFAFGNRLFAMRLMRMIPSTVCYLLGQISRNDLKEKLITVYLTGAKEAWVKERAEAFCDVSWQRLMRPLGLTSVANQLEQGATVTICSASPELVLTPFAKKLGIGLIGTRLASVDGVLTGEIDGTNCRCEQKVIRLEAKYGPLDRYTLRAWGDTRGDEQMLGAAEEPHWREFHALWRRKRPLDVCLREEL
>NZ_CP013861.1|WP_010657266.1|4411960_4412920_-|HpcH/HpaI-aldolase/citrate-lyase-family-protein
MIKHSAFALGATLYMPATRPDIMDVVMGEKIQGLRSLVVCLEDAVAETDVQQGLSNLKNLLLGIEARGGRPSGGPILFVRPRDAAMAAVLNEWSLMRHVDGFVVPKLRLGNIREWQHAVTRNELMLMPTLETPEVYDPGAMVELRSAMLEQLPGRIIALRIGGNDLMGCLGLRRSPAMTLYSTPMSYVIPMLCGVMGSAGFALTAPVFEQLNSPQLLEQELALDMAHGLVGKTAIHPSQIAVIHRALQVSLEDLNSARHILSEAAPAVFKFNDAMCEPATHYKWAQTIIERAHWQGVRPETGGSSDTFGGSLRLAELVG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP013861_4	4.2\|4399518\|30\|NZ_CP013861\|PILER-CR	4399518-4399547	30	NZ_CP013861.1	4399828-4399857	1	0.967
NZ_CP013861_4	4.2\|4399518\|30\|NZ_CP013861\|PILER-CR	4399518-4399547	30	NZ_CP013861.1	4400141-4400170	1	0.967
NZ_CP013861_4	4.2\|4399518\|30\|NZ_CP013861\|PILER-CR	4399518-4399547	30	NZ_CP013861.1	4399985-4400014	2	0.933

1. spacer 4.2|4399518|30|NZ_CP013861|PILER-CR matches to position: 4399828-4399857, mismatch: 1, identity: 0.967

cacagggggcttgtgaggctgagagcttct	CRISPR spacer
cacagggggcttgtgaggctgaaagcttct	Protospacer
**********************.*******

2. spacer 4.2|4399518|30|NZ_CP013861|PILER-CR matches to position: 4400141-4400170, mismatch: 1, identity: 0.967

cacagggggcttgtgaggctgagagcttct	CRISPR spacer
cacagggcgcttgtgaggctgagagcttct	Protospacer
******* **********************

3. spacer 4.2|4399518|30|NZ_CP013861|PILER-CR matches to position: 4399985-4400014, mismatch: 2, identity: 0.933

cacagggggcttgtgaggctgagagcttct	CRISPR spacer
cacagggggcttgtggggctgaaagcttct	Protospacer
***************.******.*******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013861_4	4.2\|4399518\|30\|NZ_CP013861\|PILER-CR	4399518-4399547	30	MN434094	Klebsiella phage AmPh_EK80, complete genome	83760-83789	8	0.733

1. spacer 4.2|4399518|30|NZ_CP013861|PILER-CR matches to MN434094 (Klebsiella phage AmPh_EK80, complete genome) position: , mismatch: 8, identity: 0.733

cacagggggcttgtgaggctgagagcttct	CRISPR spacer
ttgcgggggcttgggaggctgagagcatag	Protospacer
.   ********* ************ *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

368643 : 413568

Catovirus(20.0%)

protease,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004419586.1\|368643_370347_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	8.0e-48	28.6
WP_004419584.1\|370465_371938_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_004419582.1\|372047_372641_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_004419581.1\|373037_375035_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	7.0e-19	26.7
WP_004419578.1\|375127_376306_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.9e-25	36.5
WP_004419575.1\|376302_377148_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_004419573.1\|377216_378164_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010656689.1\|378523_379900_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_004419569.1\|380344_381448_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_004419567.1\|381552_381810_-	hypothetical protein	NA	NA	NA	NA
WP_004419565.1\|382045_382528_-	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
WP_004419563.1\|382540_383506_-	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_010656688.1\|383638_384526_-	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_004419560.1\|384599_385526_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004419558.1\|385691_386627_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_004419555.1\|386623_387040_-	DUF3010 family protein	NA	NA	NA	NA
WP_004419553.1\|387088_387490_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_004419552.1\|387709_388687_+	membrane dipeptidase	NA	NA	NA	NA
WP_060781714.1\|388816_389287_+	hypothetical protein	NA	NA	NA	NA
WP_004419549.1\|389264_391325_+	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_010656687.1\|391450_393394_+	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_010656686.1\|393390_394602_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_010656685.1\|394705_395476_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_004419538.1\|395972_397265_-	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_004419536.1\|397546_398647_+	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_004419533.1\|398828_399053_+	hypothetical protein	NA	NA	NA	NA
WP_004419530.1\|399049_399352_+	cell division protein ZapA	NA	NA	NA	NA
WP_004419528.1\|399434_400478_-	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_010656682.1\|400769_402023_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	3.0e-100	54.4
WP_004419522.1\|402045_403296_+	sarcosine oxidase subunit beta	NA	NA	NA	NA
WP_004419517.1\|403310_403643_+	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_004419514.1\|403639_406657_+	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_004419513.1\|406768_407401_+	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_004419510.1\|407492_408350_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_004419507.1\|408456_409656_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	1.1e-11	27.3
WP_010656681.1\|409699_410374_-	anti-sigma K factor	NA	NA	NA	NA
WP_085985557.1\|410370_411003_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_004419500.1\|411390_411948_+	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_010656679.1\|411950_412838_-	acyltransferase	NA	NA	NA	NA
WP_004419495.1\|413067_413568_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA

DBSCAN-SWA_2

1180888 : 1213397

Pseudomonas_phage(78.57%)

portal,lysis,terminase,tRNA,tail,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003443013.1\|1180888_1181584_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_003443012.1\|1181710_1182172_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.4e-39	52.0
WP_003443011.1\|1182248_1182959_-	RNA-binding protein S4	NA	NA	NA	NA
WP_010655688.1\|1183030_1183495_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_029612274.1\|1183593_1184916_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_010655690.1\|1185041_1186061_+	hypothetical protein	NA	NA	NA	NA
WP_010655691.1\|1186057_1187677_+	recombinase family protein	Q3HQV4	Burkholderia_phage	2.5e-160	56.9
WP_010655692.1\|1187726_1187978_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_010655693.1\|1188110_1188668_+	hypothetical protein	NA	NA	NA	NA
WP_010655694.1\|1188677_1188902_+	hypothetical protein	NA	NA	NA	NA
WP_010655695.1\|1188898_1189180_+	hypothetical protein	A8YQQ5	Burkholderia_virus	2.9e-08	43.1
WP_010655696.1\|1189303_1190008_-	helix-turn-helix domain-containing protein	A0A1W6JTC8	Pseudomonas_phage	9.2e-51	61.7
WP_010655697.1\|1190111_1190339_+	Cro/Cl family transcriptional regulator	NA	NA	NA	NA
WP_010655698.1\|1190335_1190944_+	hypothetical protein	NA	NA	NA	NA
WP_010655699.1\|1191135_1191867_+	hypothetical protein	NA	NA	NA	NA
WP_010655700.1\|1192563_1192824_-	transcriptional regulator	Q8HA63	Vibrio_phage	2.5e-09	34.6
WP_029612279.1\|1192896_1193838_-\|portal	phage portal protein	A0A0U4B0L9	Pseudomonas_phage	4.5e-101	77.4
WP_010655703.1\|1195889_1196816_+	hypothetical protein	A0A0U4JVV6	Pseudomonas_phage	3.2e-59	45.9
WP_010655704.1\|1196817_1197837_+\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	2.1e-120	66.1
WP_010655705.1\|1197833_1198550_+\|terminase	terminase	A0A0U4JEJ1	Pseudomonas_phage	3.9e-73	63.0
WP_010655706.1\|1198648_1199110_+\|head	head completion/stabilization protein	A0A0U4J933	Pseudomonas_phage	2.8e-48	64.1
WP_010655707.1\|1199106_1199556_+\|tail	tail protein	A0A0U4IBS7	Pseudomonas_phage	8.5e-50	67.4
WP_010655708.1\|1199545_1200226_+	virion morphogenesis protein	A0A0U4ISN1	Pseudomonas_phage	1.4e-67	62.8
WP_010655709.1\|1200237_1201353_+	DUF2586 family protein	A0A0U4KLE6	Pseudomonas_phage	1.5e-140	69.0
WP_010655710.1\|1201359_1201809_+	DUF2597 family protein	A0A0U3TH58	Pseudomonas_phage	2.3e-55	71.6
WP_010655712.1\|1202017_1202224_+	hypothetical protein	NA	NA	NA	NA
WP_010655713.1\|1202220_1202688_+	lysozyme	A0A0U4JP67	Pseudomonas_phage	2.6e-57	72.3
WP_010655714.1\|1202684_1203125_+\|lysis	lysis protein	A0A0U4JXC2	Pseudomonas_phage	5.3e-20	50.9
WP_010655715.1\|1203156_1203444_+	hypothetical protein	A0A0U4B0P2	Pseudomonas_phage	2.3e-24	61.5
WP_010655716.1\|1203467_1203608_+	hypothetical protein	A0A0U4B0S4	Pseudomonas_phage	3.6e-15	76.1
WP_010655717.1\|1203614_1205597_+\|tail	phage tail tape measure protein	A0A0U4IJ81	Pseudomonas_phage	6.9e-136	40.9
WP_010655718.1\|1205593_1205911_+	DUF2590 family protein	A0A0U4B0N5	Pseudomonas_phage	1.5e-37	79.6
WP_010655719.1\|1205907_1207083_+	hypothetical protein	A0A0U4JJ14	Pseudomonas_phage	4.3e-162	72.2
WP_010655720.1\|1207075_1207687_+\|tail	phage tail protein	A0A0U4JVX3	Pseudomonas_phage	7.7e-78	77.0
WP_010655721.1\|1207676_1209287_+\|tail	tail fiber protein	A0A0U4K5K2	Pseudomonas_phage	1.1e-128	48.5
WP_010655722.1\|1209296_1210007_+	hypothetical protein	A0A0U4JEJ6	Pseudomonas_phage	2.3e-49	41.8
WP_010655723.1\|1210003_1210924_+	hypothetical protein	NA	NA	NA	NA
WP_010655724.1\|1210920_1211463_+	hypothetical protein	A0A0U4J942	Pseudomonas_phage	1.7e-60	69.1
WP_029612287.1\|1211459_1212170_+	hypothetical protein	A0A2I7RNK1	Vibrio_phage	3.5e-42	43.3
WP_010655726.1\|1212142_1213093_+	hypothetical protein	A0A0U4IBV2	Pseudomonas_phage	1.6e-98	57.1
WP_060781729.1\|1213094_1213397_+	hypothetical protein	A0A2R3UAY9	Myoviridae_environmental_samples	6.4e-17	45.5

DBSCAN-SWA_3

2719806 : 2786626

Pseudomonas_phage(61.54%)

protease,transposase,terminase,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003445767.1\|2719806_2720289_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_003445769.1\|2720402_2721551_-	PQQ-dependent sugar dehydrogenase	NA	NA	NA	NA
WP_003445772.1\|2721973_2722480_-	hypothetical protein	NA	NA	NA	NA
WP_003445774.1\|2722679_2722994_-	acid-resistance protein HdeA	NA	NA	NA	NA
WP_010657037.1\|2724518_2724872_-	hypothetical protein	NA	NA	NA	NA
WP_010657038.1\|2725117_2726425_-	MFS transporter	NA	NA	NA	NA
WP_010657039.1\|2726602_2727943_-	amidase	NA	NA	NA	NA
WP_003445790.1\|2727950_2728628_-	DUF2848 domain-containing protein	NA	NA	NA	NA
WP_003445792.1\|2728651_2729341_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010657040.1\|2729556_2729832_-	DUF2798 domain-containing protein	NA	NA	NA	NA
WP_010657041.1\|2729963_2730893_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003445798.1\|2731100_2731547_+	SRPBCC family protein	NA	NA	NA	NA
WP_010657042.1\|2731613_2731967_-	hypothetical protein	NA	NA	NA	NA
WP_003445802.1\|2732064_2732808_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_010657043.1\|2732988_2733525_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010657044.1\|2733727_2734984_-	hypothetical protein	NA	NA	NA	NA
WP_003445809.1\|2735316_2736012_-	hypothetical protein	NA	NA	NA	NA
WP_003445810.1\|2736146_2737583_-	MFS transporter	NA	NA	NA	NA
WP_010657045.1\|2737639_2738455_-	shikimate dehydrogenase	NA	NA	NA	NA
WP_156428464.1\|2738486_2738822_+	hypothetical protein	NA	NA	NA	NA
WP_010657474.1\|2739513_2739957_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_029613039.1\|2740274_2741690_-	hypothetical protein	NA	NA	NA	NA
WP_082711658.1\|2741896_2742487_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_010657076.1\|2742769_2744200_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_010657077.1\|2745172_2745409_+	hypothetical protein	NA	NA	NA	NA
WP_156428465.1\|2745506_2745680_+	hypothetical protein	NA	NA	NA	NA
WP_081481323.1\|2746028_2746643_+	hypothetical protein	NA	NA	NA	NA
WP_010657079.1\|2746817_2747651_-	hypothetical protein	NA	NA	NA	NA
WP_010657080.1\|2747873_2749154_-	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	9.4e-110	49.8
WP_010657081.1\|2749143_2749572_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A218MND2	uncultured_virus	1.5e-16	39.7
WP_029612866.1\|2749722_2750415_+	hypothetical protein	A0A2H4J991	uncultured_Caudovirales_phage	2.8e-60	50.2
WP_081481320.1\|2750446_2750656_-	hypothetical protein	A0A2H4JG60	uncultured_Caudovirales_phage	2.4e-15	63.9
WP_029612868.1\|2750722_2750983_-	hypothetical protein	NA	NA	NA	NA
WP_039736968.1\|2751051_2751555_-	lysozyme	A0A2H4JBH9	uncultured_Caudovirales_phage	8.6e-51	68.1
WP_010657085.1\|2751551_2752061_-	glycoside hydrolase family 104 protein	A0A1Y0T0U4	Pseudomonas_phage	1.1e-50	60.7
WP_010657087.1\|2753166_2753901_-	hypothetical protein	NA	NA	NA	NA
WP_010657088.1\|2753901_2754261_-	hypothetical protein	NA	NA	NA	NA
WP_010657089.1\|2754261_2757993_-\|tail	phage tail protein	A0A1B0VMH5	Pseudomonas_phage	0.0e+00	68.8
WP_010657090.1\|2758049_2758646_-\|tail	tail assembly protein	A0A1B0VME1	Pseudomonas_phage	1.2e-78	76.8
WP_029612872.1\|2758701_2759124_-	hypothetical protein	A0A1B0VMH3	Pseudomonas_phage	6.7e-57	82.1
WP_029612874.1\|2759158_2759449_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_029612876.1\|2759647_2759893_+	hypothetical protein	NA	NA	NA	NA
WP_010657094.1\|2759885_2760095_-	hypothetical protein	NA	NA	NA	NA
WP_010657095.1\|2760118_2760883_-	C40 family peptidase	A0A2H4J1J7	uncultured_Caudovirales_phage	2.0e-128	81.7
WP_010657096.1\|2760885_2761638_-\|tail	phage minor tail protein L	A0A1B0VNE0	Pseudomonas_phage	1.3e-122	80.8
WP_010657097.1\|2761649_2761985_-\|tail	phage tail protein	A0A1B0VMG7	Pseudomonas_phage	2.2e-42	69.6
WP_010657098.1\|2761988_2765372_-\|tail	phage tail tape measure protein	A0A1B0VMG8	Pseudomonas_phage	2.5e-234	51.5
WP_029612878.1\|2765376_2765676_-	hypothetical protein	A0A1B0VMG9	Pseudomonas_phage	5.5e-21	54.2
WP_010657100.1\|2765693_2766083_-	hypothetical protein	A0A1B0VMH4	Pseudomonas_phage	8.4e-46	72.1
WP_010657101.1\|2766093_2766741_-\|tail	phage tail protein	A0A1S5R1H0	Pseudomonas_phage	2.1e-49	47.9
WP_010657102.1\|2766809_2767226_-	hypothetical protein	A0A2H4J130	uncultured_Caudovirales_phage	1.3e-36	56.9
WP_029612880.1\|2767222_2767819_-	hypothetical protein	A0A2H4J0Q3	uncultured_Caudovirales_phage	2.9e-53	49.5
WP_010657104.1\|2767933_2768245_-	hypothetical protein	NA	NA	NA	NA
WP_010657105.1\|2768350_2768719_-	hypothetical protein	A0A1B0VRJ4	Pseudomonas_phage	4.2e-55	85.0
WP_010657106.1\|2768779_2769142_-	DNA-directed RNA polymerase subunit alpha	NA	NA	NA	NA
WP_010657107.1\|2769248_2769752_-	hypothetical protein	A0A1B0VND3	Pseudomonas_phage	9.4e-74	83.8
WP_156428466.1\|2769814_2770420_-	hypothetical protein	A0A1B0VMF7	Pseudomonas_phage	2.7e-51	57.5
WP_010657109.1\|2770446_2771412_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	1.4e-161	89.6
WP_010657110.1\|2771424_2772153_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	2.0e-117	91.3
WP_060781791.1\|2772295_2772808_+	hypothetical protein	NA	NA	NA	NA
WP_010657112.1\|2772810_2773899_-\|head	head morphogenesis protein	A0A1B0VMF3	Pseudomonas_phage	6.4e-176	87.8
WP_010657113.1\|2773873_2775289_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	4.6e-251	89.0
WP_010657114.1\|2775285_2776587_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	4.1e-145	58.0
WP_010657115.1\|2776573_2777035_-	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	1.0e-50	77.3
WP_010657116.1\|2777066_2777681_-	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	7.4e-105	89.4
WP_010657117.1\|2777752_2778169_+	hypothetical protein	NA	NA	NA	NA
WP_010657118.1\|2778247_2778700_+	hypothetical protein	NA	NA	NA	NA
WP_010657119.1\|2778992_2779313_-	hypothetical protein	D5LH08	Escherichia_phage	9.1e-06	39.2
WP_010657120.1\|2779302_2779638_-	hypothetical protein	A0A088FVG2	Escherichia_phage	4.9e-18	45.3
WP_010657121.1\|2779771_2780176_-	hypothetical protein	NA	NA	NA	NA
WP_010657122.1\|2780718_2781102_-	hypothetical protein	NA	NA	NA	NA
WP_010657123.1\|2781368_2781950_-	hypothetical protein	A0A059VF83	Pseudomonas_phage	4.6e-80	73.6
WP_029612882.1\|2781946_2782549_-	hypothetical protein	A0A0U1VZM0	Pseudomonas_phage	4.6e-67	64.5
WP_029612884.1\|2782545_2783133_-	DUF1367 family protein	Q9MC49	Pseudomonas_phage	1.8e-92	79.9
WP_010657126.1\|2783125_2783341_-	TraR/DksA family transcriptional regulator	A5X9I2	Aeromonas_virus	8.8e-05	49.2
WP_010657127.1\|2783340_2784147_-	ATP-binding protein	A0A2H4J3E5	uncultured_Caudovirales_phage	4.0e-90	61.3
WP_029612886.1\|2784136_2784964_-	replication protein	W6MYB0	Pseudomonas_phage	4.6e-41	39.5
WP_010657129.1\|2785029_2785452_-	Rha family transcriptional regulator	A0A2D1GNM7	Pseudomonas_phage	3.0e-33	50.7
WP_010657130.1\|2785535_2785775_-	hypothetical protein	A0A088CE43	Shigella_phage	1.6e-10	46.5
WP_010657131.1\|2785861_2786626_+	LexA family transcriptional regulator	A0A2H4J0J9	uncultured_Caudovirales_phage	3.2e-73	57.6

DBSCAN-SWA_4

2789932 : 2796025

Pseudomonas_phage(62.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010657135.1\|2789932_2790526_+	zinc ribbon domain-containing protein	A0A0S2SY85	Pseudomonas_phage	5.4e-12	35.9
WP_010657136.1\|2790945_2791284_+	hypothetical protein	NA	NA	NA	NA
WP_010657137.1\|2791385_2791571_+	carbon storage regulator CsrA	H2BD56	Pseudomonas_phage	3.0e-09	60.8
WP_156428468.1\|2791812_2792040_-	hypothetical protein	NA	NA	NA	NA
WP_010657138.1\|2792184_2792430_+	hypothetical protein	A0A2H4J404	uncultured_Caudovirales_phage	5.0e-12	44.4
WP_010657139.1\|2792435_2792882_+	hypothetical protein	A0A2H4J7X7	uncultured_Caudovirales_phage	1.5e-54	73.2
WP_010657140.1\|2793040_2794144_+	hypothetical protein	A0A1B0VN89	Pseudomonas_phage	1.1e-77	77.7
WP_010657141.1\|2794151_2794922_+	single-stranded DNA-binding protein	A0A125RNR3	Pseudomonas_phage	8.8e-55	48.8
WP_010657142.1\|2794918_2795536_+	exonuclease	A0A1B0VMB3	Pseudomonas_phage	1.4e-95	81.5
WP_010657143.1\|2795548_2796025_+	single-stranded DNA-binding protein	M1NRI2	Streptococcus_phage	6.1e-06	40.6

DBSCAN-SWA_5

3351754 : 3356638

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003442061.1\|3351754_3352426_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.9e-109	95.1
WP_003442060.1\|3352536_3352929_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.0e-63	92.3
WP_010656406.1\|3352930_3353293_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	4.1e-47	78.3
WP_003442058.1\|3353292_3353571_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.4e-33	72.7
WP_003442057.1\|3353567_3353903_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.1e-49	86.5
WP_003442054.1\|3353899_3354901_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	7.9e-181	91.3
WP_010656407.1\|3354989_3355988_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003442050.1\|3356059_3356287_+	YheU family protein	A0A2H4J8A7	uncultured_Caudovirales_phage	2.1e-36	98.7
WP_003442048.1\|3356305_3356638_-	YnfA family protein	A0A2H4JF35	uncultured_Caudovirales_phage	1.9e-51	91.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013861

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection