CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP013042	Endosymbiont of Bathymodiolus septemdierum str. Myojin knoll isolate A1	2 crisprs	cas3,DEDDh,csa3,cas6,DinG,cas2,cas1,cas9	1	2	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP013042_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP013042_1

1076887-1077055

TypeII

Consensus_repeat	Method
AGTTATAGACCCCTCCCTCTCTCTGGTCTGATATACT	CRISPRCasFinder

2 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_AP013042_1

>merge|NZ_AP013042|1|1076887-1077055|CRISPRCasFinder
AGTTATAGACCCCTCCCTCTCTCTGGTCTGATATACTAAATAAATATGTGCAAAGACATTCTGGCTAGTTATAGACCCCTCCCTCTCTCTGGTCTGATATACTTTCGGCAGTCGCCTTAGTCGGTGGTGGCTCGTTATAGACCCCTCCCTCTCTCTGGTCTGATATACT

>NZ_AP013042|1|1|1076887-1077055|CRISPRCasFinder
AGTTATAGACCCCTCCCTCTCTCTGGTCTGATATACT	AAATAAATATGTGCAAAGACATTCTGGCT
AGTTATAGACCCCTCCCTCTCTCTGGTCTGATATACT	TTCGGCAGTCGCCTTAGTCGGTGGTGGCT
CGTTATAGACCCCTCCCTCTCTCTGGTCTGATATACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP013042.1\|WP_066045018.1\|1088023_1089211_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226984
NZ_AP013042.1\|WP_066046126.1\|1078446_1079670_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|225865
NZ_AP013042.1\|WP_066044989.1\|1071524_1072292_+\|FtsQ-type-POTRA-domain-containing-protein	unknown	unknown	gnl\|CDD\|224505
NZ_AP013042.1\|WP_066045006.1\|1079711_1082876_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
NZ_AP013042.1\|WP_066045010.1\|1084413_1085082_+\|Bax-inhibitor-1-family-protein	unknown	unknown	gnl\|CDD\|198415
NZ_AP013042.1\|WP_066044987.1\|1070653_1071532_+\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234948
NZ_AP013042.1\|WP_066044981.1\|1068417_1069827_+\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|234757
NZ_AP013042.1\|WP_066045004.1\|1077431_1078322_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_AP013042.1\|WP_066044997.1\|1074834_1075845_-\|CDP-6-deoxy-delta-3,4-glucoseen-reductase	unknown	unknown	gnl\|CDD\|181058
NZ_AP013042.1\|WP_066045012.1\|1085074_1085602_+\|RNA-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|234820
NZ_AP013042.1\|WP_066045001.1\|1077112_1077442_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_AP013042.1\|WP_066044995.1\|1074526_1074832_-\|BolA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376601
NZ_AP013042.1\|WP_066045014.1\|1085651_1086929_+\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
NZ_AP013042.1\|WP_070104565.1\|1072985_1074587_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|182727
NZ_AP013042.1\|WP_066044999.1\|1075913_1076849_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NZ_AP013042.1\|WP_066045016.1\|1086943_1088014_+\|threonine-synthase	unknown	unknown	gnl\|CDD\|236013
NZ_AP013042.1\|WP_066044991.1\|1072266_1072977_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013042.1\|WP_066045008.1\|1083069_1084353_-\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|235160
NZ_AP013042.1\|WP_066044979.1\|1067957_1068425_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_AP013042.1\|WP_066044984.1\|1069823_1070657_+\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237553

Protein	Function_ID	Function_description	E-value
NZ_AP013042.1\|WP_066045018.1\|1088023_1089211_+\|AAA-family-ATPase	gnl\|CDD\|226984	COG4637, COG4637, Predicted ATPase [General function prediction only].	1.23463e-89
NZ_AP013042.1\|WP_066046126.1\|1078446_1079670_+\|IS256-family-transposase	gnl\|CDD\|225865	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.82712e-119
NZ_AP013042.1\|WP_066044989.1\|1071524_1072292_+\|FtsQ-type-POTRA-domain-containing-protein	gnl\|CDD\|224505	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane].	2.18833e-06
NZ_AP013042.1\|WP_066045006.1\|1079711_1082876_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	4.73281e-129
NZ_AP013042.1\|WP_066045010.1\|1084413_1085082_+\|Bax-inhibitor-1-family-protein	gnl\|CDD\|198415	cd10433, YccA_like, YccA-like proteins. A prokaryotic member of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	2.24299e-54
NZ_AP013042.1\|WP_066044987.1\|1070653_1071532_+\|D-alanine--D-alanine-ligase	gnl\|CDD\|234948	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.	8.75619e-158
NZ_AP013042.1\|WP_066044981.1\|1068417_1069827_+\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|234757	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional.	0
NZ_AP013042.1\|WP_066045004.1\|1077431_1078322_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	8.56393e-97
NZ_AP013042.1\|WP_066044997.1\|1074834_1075845_-\|CDP-6-deoxy-delta-3,4-glucoseen-reductase	gnl\|CDD\|181058	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated.	8.1313e-163
NZ_AP013042.1\|WP_066045012.1\|1085074_1085602_+\|RNA-pyrophosphohydrolase	gnl\|CDD\|234820	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.	4.42852e-76
NZ_AP013042.1\|WP_066045001.1\|1077112_1077442_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	5.42793e-41
NZ_AP013042.1\|WP_066044995.1\|1074526_1074832_-\|BolA-family-transcriptional-regulator	gnl\|CDD\|376601	pfam01722, BolA, BolA-like protein. This family consist of the morphoprotein BolA from E. coli and its various homologs. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5.	6.16394e-31
NZ_AP013042.1\|WP_066045014.1\|1085651_1086929_+\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	0
NZ_AP013042.1\|WP_070104565.1\|1072985_1074587_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|182727	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional.	2.50627e-97
NZ_AP013042.1\|WP_066044999.1\|1075913_1076849_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	4.9743e-135
NZ_AP013042.1\|WP_066045016.1\|1086943_1088014_+\|threonine-synthase	gnl\|CDD\|236013	PRK07409, PRK07409, threonine synthase; Validated.	0
NZ_AP013042.1\|WP_066045008.1\|1083069_1084353_-\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	gnl\|CDD\|235160	PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.	1.42223e-164
NZ_AP013042.1\|WP_066044979.1\|1067957_1068425_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	2.98808e-55
NZ_AP013042.1\|WP_066044984.1\|1069823_1070657_+\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237553	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase.	2.85366e-126

>NZ_AP013042.1|WP_066044999.1|1075913_1076849_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MSIQPNTAVFLMGPTASGKTDFAIELSKQFPVRLISVDSALIYKGMDIGTAKPNAETLRQYPHQLINICNPEDSYSAFDFVQDAKTQIQIAFNNNETPILVGGTAFYFNALEHGLSDLPESTPESREKFTQLLCEKGASTLHQDLATIDPTAAKRIHPNDAQRITRALEVFDISGKTLTELQGNKQLGLTYPVKKIILMPPRPELHARIEQRFLSMIDNDFLAEVKTLKQNPALHEDLPSIRCVGYRQAWQYLNNEIDKATMIEKSIIATRQLCKRQSTWLRNEPNALTLEMPDITKAIEFIHNERPLHDS
>NZ_AP013042.1|WP_066044997.1|1074834_1075845_-|CDP-6-deoxy-delta-3,4-glucoseen-reductase
MFTIENQATGKVFRTEGNGPILDDALIHGLNFPYGCQKGFCGKCKATIIEGEVGYDTDVPNGITPEEVADGMALLCQCHAKSDVSLVVEELDSLADIKVKILPCKVESITHLNHDVAQIFLKIPGAESLQYFAGQYIDLIHPDFEPRAFSIANAPKNSNLIELHVRLVDGGKFTHFIFNEMKEKSLLKLEGPKGDFFFREDSKKPVILLAGGTGFAPIKSIVEHAIATNLSRQIYVYWGAREACDLYMDLPQQWANTHDNIHFVPVLSEADEAWQGKTGYVHDSVLADFEDLTGYEVYACGPPAMVKSAANTFVAQGMIKDNFFSDAFVFAYTKEK
>NZ_AP013042.1|WP_066044995.1|1074526_1074832_-|BolA-family-transcriptional-regulator
MDMQQHLTEQLTTALSPAHLQVLNESKNHSGPATQSHFKLIVVSDEFTGLKLIDRHRFINQLFKEELTHIHALAMHTYTPSEWKMKQGAPASPQCAGGSKS
>NZ_AP013042.1|WP_070104565.1|1072985_1074587_-|LysM-peptidoglycan-binding-domain-containing-protein
MEDETGRTRFSAVCRGVKILRILLLLSFVLLSACSTQETTSDKHFVNFTVAEKPVKLISSKIEGEDLWRYISRGSTLKARSQRDLYWHIKWFKENPDYLTRVTKRAGPYLHLVIQEVKKAGLPIELALLPIVESAYYPFSYSHGTASGLWQFIPDTGRLYGLKQNYWMDERRSVIRSTRAAVAYLKNLHTLFKGDWLLAIASYNSGPGRVQKAVKKNKAKGRKADFWNISLPAETRGYVPRLLAVAELIKHPEKYGQTITPISNMPKLESVFVYSQLDLSLISEWTGLSLDEIYTLNPDLNRWATPDTTRYELLLPIDKVARFKKARASYPKQKQLRYKRYTIKSGDSLNSLAKRFNSSVSYIKSINNIKGTRIKLGQKIIITIPKKAKDYYSLSIEQRKKQRFNSRKYGKKITHIVAKGEILWVISNRYGVPVDSIIKWNYLSNATKGLQIGKKLVIWQVPKTKASALKNLTKKGVNVKRTLSYKVKSGDNLSTIAHKFKVRISQLRQWNNLAKNKPLKIGKKLKIIKSIVE
>NZ_AP013042.1|WP_066044991.1|1072266_1072977_-|hypothetical-protein
MNQLPVNKVFIAGFAFAMTHWKKILEISLVPLVISLPLLMMLPELLMVAKQVFLAIEQTAPDTPLPEIILPDNTGIYFILFLYGNISLSIDMYRLVILGRQSVGITPVFDLGKIARFFGLTLLVGMVTIVPLVLTNLLILQFIISFLMVPITLNFVNIAIGKPSRYRWGLSFPTHMNLFFLQVIVPMLVVLLLTSLAKLIGFGVGAEWVARVLVFYWSAITLALCYQLLTTSGKTP
>NZ_AP013042.1|WP_066044989.1|1071524_1072292_+|FtsQ-type-POTRA-domain-containing-protein
MIKKQNRRYNAHKKTTAQRLMPIAKILSILIILGFTIWGVVKIKEMDFLQTKITWQIDNNLLVAQSHLESKVQPLIKNKYLLLNLIEIKQVLENEPWIATANIKRLFFNSIQVSIKTHKIAMRWENINCKQKSVPGCLGYISTNGTLFMPRKTVKSNAVLAHSKAEQAVITQLYQDYQNYQKSSGEMRIHAFSKTQIDTLIFKPNIKVILGYQQKQQRLERFLKAYKELKKTTPKVKLNRASFDMRYPKGFSLKL
>NZ_AP013042.1|WP_066044987.1|1070653_1071532_+|D-alanine--D-alanine-ligase
MIAVLMGGNSAEREVSLNSGEAVYNALKNQGVDCFKFDWHGNNLDTLWVQNFDKAFIVLHGRGGEDGYIQQQLEQRNIKYTGSGATTSEQCMNKATTKNIWRQHNLPLSPSVLSKVGQKIPDIDFPLPWAVKPILEGSSVGISKVKTIEGLNKALELAWEYDEIALIEQWVEGSEYTVSILKGEALPVIQIKTNQGFYDYASKYLANDTQYLCPCGLSDDNEQLLKEIAMRAFTLMGAETWGRVDFILDKENLPYLLEINTVPGMTSHSLVPMAVKARGMSFDELVMEILND
>NZ_AP013042.1|WP_066044984.1|1069823_1070657_+|UDP-N-acetylmuramate-dehydrogenase
MRLRNESMHKHCSLRAGGKVKDFFVPDTINELSDFLKNNQQPILILGLGSNLLVRDCGFNGTAIKLTHLNQLTFKDGLIHAGAGVTLAKLSRFCESQQLNGVEFLSAIPGSVGGALAMNAGAFGADIWSFVESVNTINHSGKVFMRDKSEYDIAYRSVIPHQKDEIFIGANLKTSQTEKQDNIKVLLKKRNESQPIGLPNCGSVFKNPPNNHAAKLIEDSGLKGFCIGGACVSKKHANFIINQNNATTNDIENLIQHIQQTVKSNCEIDLETEVVII
>NZ_AP013042.1|WP_066044981.1|1068417_1069827_+|UDP-N-acetylmuramate--L-alanine-ligase
MNNLRPAFTSRIKKIHFIGIGGSGMSGIAEVLHNLDYQISGSDLIQSPITQRLQALGCKIFHQHHQDNVQNVDAVVISSAINSENPELIKARKNNIAVMPRAEMLAEIMRFRFGIAVAGTHGKTTTTSLITHILNTAKLDPTYIIGGILNSSGINAKLGESDYLVAEADESDASFLLLQPMLSVITNIDQDHMSTYDNDYNKLKDAFISFTSNLPFYGACVVCGDDIGVQSILEKISRPTVTYGFSDNVDIQAIDISQIGRKMHFEVRCHCHKNIEPFKVELNGIGKHNVLNTLAAIGVACELDIDTHLIQNALKSFSGVARRLDFHGILNIDNKKTLLFDDYGHHPNEIKAVLESLRDTYKNRRLMVIFQPHRYTRTRDLFDDFCHALSKVDALILLDVYAANEQPIANISSSTLANSIRQRSTVSPIVVKDVNEALKVLPNIVQDNDVILTLGAGNIHSLVSLLTKK
>NZ_AP013042.1|WP_066044979.1|1067957_1068425_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MIKTGIGQDSHAFINGKPLVLGGVTFDHPQGLKGNSDADVILHSLTNAISSITGKNILGAEADKLCKQGVTDSAEYLKLALVDLGDWHIDHIAITMECLVPKIFPNIDAIKSNIANLTNIKITDVGLTATTGEGLTAFGRGEGIQVFTIITVSNE
>NZ_AP013042.1|WP_066045001.1|1077112_1077442_-|CRISPR-associated-endonuclease-Cas2
MLNKNDRFMRLIVFFDLPTKTKQDKRVYTVFRRYLLKDGFIMLQFSVYSRVCKGLDSVESHLKYLKSILPPKGNIRMLQVTEKQYARMEILLGSVKKTEKSAGKQLLLF
>NZ_AP013042.1|WP_066045004.1|1077431_1078322_-|type-II-CRISPR-associated-endonuclease-Cas1
MSWQTLLISNPCKLSIKNGNILLRRLDDEDANIAISEVSAIVIENPQVTMTAVFMSHCADSNIVVIFSDEKYTPIGVFHPFYQHSRMTKHAFLQNNWSQSFKNRVWQKIVKAKILNQQQTLIKITKQPNKQLSLIASKVQSADKTNREAYAATIYWRTLFENFKRNNTNDIRNSALDYGYSIVRSAIARSISASGFVPAFGFHHKNELNAFNLVDDLIEPFRAFIDFEVYLLNPSKTGTKLTFKMRADLVNILNKQVVFKQEKTTLLNAIQMMVFGLLSASEHQDIDLLLLPRHAQ
>NZ_AP013042.1|WP_066046126.1|1078446_1079670_+|IS256-family-transposase
MNQQKLRAFAGELAKDIHTQDDLADLSASLVKMTIEAALGAEMEHHLGYPKYGQNGNESNASNNARNGYYSKIVKGNHGEVELAIPRDRNANFEPAIIEKGQTRLGAFDNQILSLYAKGMSTRDIVTTFKEMYDADISATLVSNVTQAVITQATEWRNRPLDEIYPIVYLDGIVIKVRQDKQIIKKTMYIALGVNLEGKKECLGLWLSKNESSKFWLGVLNDIANRGVKDILIASVDGLTGFPEAINAVFPQADVQLCIVHMVRNSLKYVGYKEHKNVASDLKQIYQSITEEEALLALDEFEYKWDTQFPSIAKSWRRNWDNVATLFAYPEAIRKAIYTTNAIESLNSMIRKSIKNRKIFNHDNSAFKVVFLAIEAASKKWTMPIRNWSQAMNQFIILHEDRLKDYV
>NZ_AP013042.1|WP_066045006.1|1079711_1082876_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MRILGVDLGVASVGWALVNDKNNKIIDSGVRIFTQSTNREGKTLAAVRRSFRGGRRVLSRRKQRLNQLKKLFIAHKLLSKSEFKHLFNSKNRLDIWQLRAKGLEQQLNNKEWARVLYHIAKRRAYQSNRKSEESGNTDKKKVLSGISKNEKKMNELGYKTIGEMLYTENRYPDNRIRRNKKDQYKHSISRDLLRKEIDVLFESQRDFGNQFATDGLKEHYKDIAFTQRPIKFKADLVGKCTFETQEYRGAKNCFSVEKSTLLSKINNTDLIDKSTGEIKRLFEISEFDKLLDIFYSIKEVKYTTLRKQLKITDAFKFKQLDYHQNFEYKTNIKAKIEDFYKLEDWLTPEQKVLLEKQVLDDKKEKFKCYKYSSIRSILSLSESQKFNGVKYDTKVENTVFGKLNGYHSIKKELNKEVFDLLFIDKDKFNKIAEILSYQKDDKSATQDLKKQVFNDFNMDKTIVNEAINSLLNISFSGFNSLSLKAINKLLPYLCQGLKYHDAVAHSEYKHHSQFKAANPQQYLRPLNKEENYQITSPTVKRVFSQFRKVLNAVIRKHGSFDAMHIEMARELKNSKKIKFEIQTGQKEYAQEKEAIRVKFLEIFKYEGSGRDLLKLRLYEQQHGKCIYSKKEIEINKLLEDGYVEIDHILPWSRTFDNSLNNKALCLSAENQNKANQTPFEYLTNSDKNSKDSKEWQEYKNYVSSFAGIKQAKKHKLLNTTLPPRRGNDFSDDIKNPESGFLARNLNDTAYASRFIKNFVQNHLQFSQNDTIKQKVKVRSGALTNQLRYNWGIEEKNRDNNLHHAEDAIILAFATQGEVQRMSTISAKREDFKYQTAKERKIKFTPPFSDFKSVLDESVGDIFVSFAPRRKISGAAHKATIKPKDTGGKYKFPVNNGMAENGVIQRVDVFKNAKNKYQFIVFYPADFYKDDFPELDLKGNEIDKNVQFLFSLFKDDLIEFKTKKTKTKDSKHLLAYFKYIRSDGKIAFQQNYKAEIERKESDNKKGYKDILLATGSGLASLKKYQVSVLGDIAEVKNEKRLPLIKQMYKSKPKKK
>NZ_AP013042.1|WP_066045008.1|1083069_1084353_-|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase
MKLVLGLGDTGLSIARFLSKQNIAYRIADSRQNPPSLNNCPQSPILGDWTLDLLADIDEIFISPGIAQTEPIVLWAKQQNISIVSDIELFSRHAQAPIIGITGSNGKSTVTQLFGEMIANDGKKVAIGGNIGKPALDCLDDDIAYYVLELSSYQLDYTQNLRLFTGVVLNITPDHLDRYLSFEHYAQSKLSLYTHCQTSVINIDEPLTSKQSSSKIFGMDIPKNPKDFGTVTCHNSTYLLKGDTSLMCIDDMPLIGEHNIKNALAALSLGDQIGLSTEAMIATLKTFKGLEHRLEKVTEKNNITYYNDSKATNAISTITAIQALISTHKNIILIMGGVAKQEDYHPLFTLINEHKIPVVLIGKDTHKFEKSITNTTLANTLEDAITTAQSLIIKGAILLSPACASFDMFDNFEQRGRMFKDYVNSAH
>NZ_AP013042.1|WP_066045010.1|1084413_1085082_+|Bax-inhibitor-1-family-protein
MSTFTTTATMGSVQVKNKVLSDTMRLLSYTLVFGGLSSWFAVTTGAGFGSAMVASLVAIAVIWFVLPKTQNSNKGIVTAFAVAGLLGYSLGPMLTHYLAMPNGASLVMQALTGTGVSFFAISFYAQNTKKDFSFMGGMIFFAMVGVIALSLINIFFIESSFVSLAISFAVVLLMGAFMLMQMSSIINGGERNYIAATVGLYLSLHNMFASLLHILGAFGGDD
>NZ_AP013042.1|WP_066045012.1|1085074_1085602_+|RNA-pyrophosphohydrolase
MIDREGYRANVGIVITNDKQQVLLAKRFKKEGWQLPQGGIDKGENELEALLRELEEEVGLRAEHIEVVAKTPKWLRYDLPKNKRSKYCVGQKQVWFLLKLIGSESDIKLDTHTKIEFEDWKWVDYWHPIEAIIDFKKPIYEDMLKALAPVLFNNQHKVPVQYSRPLKCSAITFSK
>NZ_AP013042.1|WP_066045014.1|1085651_1086929_+|homoserine-dehydrogenase
MNIGILGLGTVGGGVVNVLAKNNAEIKRRTGASIQVTHAAVRDVNQARICPTDHIKLTEDPLTIVNDASIDVVLELMGGTGLAKELVEAALRNGKHVITANKALIATHGNALLALAKSNNVHLLFEAAVAGGIPILKSLEQGLSANQVEMVAGIINGTGNFILTEMRDKGRDFADVLKEAQELGYAEADPTFDVEGIDAAHKLAILASIAFGCELDFDKVSSEGISEVSGEDVAFATELGYSIKHLGIAKKINGQIQMRVHPTLIPKTQLLANVDGVMNAVLVKGNAVGPTLYYGAGAGAEATASAVIADLVDVIKGTVSADVFGWKSLKAVQSQNVNDIESVFYLRLLAKDTTGVLADITSILANHNISVESVVQKQIDAQNNAHIAIITNSVETGDINTAVAEIQEKDFIQAAIKIIHVETLD
>NZ_AP013042.1|WP_066045016.1|1086943_1088014_+|threonine-synthase
MSKRYTGLINHYKNRLPVDKNTKFISLGEGNTPLIRLENIPALLGKNVDIYVKYEGLNPTGSFKDRGMTMAVTKAVEAGSKAIICASTGNTSASAAAYAARAGIKAFVLIPEGKIALGKLAQAMMHGAVIIQIKGNFDDGMRLVKEVANHAPVSIVNSINPFRLQGQKTAAFEIVEELGDAPDYHCLPVGNAGNISAHWMGYKEYNQDGISAKTPSMVGYQAEGAAPFTKGEMVDNPETIATAIRIGHPQSWDLAHKVKEESNGWFDAISDEAILAAQKLLTEQEGIFCEPASATSLAGAMIDINNGKIPEGSTIVCTLTGHGLKDPDTAIAQCKSEMILINPVMDEVKNAILENM
>NZ_AP013042.1|WP_066045018.1|1088023_1089211_+|AAA-family-ATPase
MKIESIKIKNFKAFKNAEMKDIPRFCVIVGANGSGKTTLFNVFGFLKDALTDDVNTAFNKRGRFNEVISRDCSGSIEFEIKFRAKDTSKNNPIITYSLSISQKNGKALVEKEVLKYRRGSKGTPWHFLEFSNGKGYAVTNELDGDTDINELSREEQTLKSPDILAIKGLAQFEKFPAVIALSELIDNWHVSDIHVNEARNIQQADYAEHLSTLGENLSNVVDYLHNNHKSTLDEIIKILQQRILGISKVEAKTIETGQVLLKIQDESFDKPFLVRYISDGTIKMLAYLVLLYDPKPYPLLCVEEPENQLYPHLLEELAEEFRAYANRGEQVFVSTHSPDFLNAVEVNEVFYLSKNNGYTTIKRISDDEQIKAFMNDGDKMGYLWKQGFFDQLGKQ

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Crispr_ID: NZ_AP013042_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP013042_2

1317388-1317531

Orphan

Consensus_repeat	Method
GCCTTATCATAATCTTCAATGGCTTTTTCAAACTGTTTTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP013042_2

>merge|NZ_AP013042|2|1317388-1317531|CRISPRCasFinder
GCCTTATCATAATCTTCAATGGCTTTTTCAAACTGTTTTAAATGAGTATAAGCATTGCCGCGGTTGTAAAAGGCCTTGGCATACTTTGGGTTTAAGTCAATAGCCTTATCATAATCTTCAATGGCTTTATCAAACTGTTTTAAA

>NZ_AP013042|2|2|1317388-1317531|CRISPRCasFinder
GCCTTATCATAATCTTCAATGGCTTTTTCAAACTGTTTTAAA	TGAGTATAAGCATTGCCGCGGTTGTAAAAGGCCTTGGCATACTTTGGGTTTAAGTCAATA
GCCTTATCATAATCTTCAATGGCTTTATCAAACTGTTTTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP013042.1\|WP_066045517.1\|1323881_1324568_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013042.1\|WP_066045471.1\|1311762_1313574_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NZ_AP013042.1\|WP_066045508.1\|1321864_1322278_-\|arsenate-reductase-ArsC	unknown	unknown	gnl\|CDD\|319973
NZ_AP013042.1\|WP_066045504.1\|1321517_1321769_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013042.1\|WP_066045457.1\|1306730_1307954_+\|aminopeptidase-P-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|182804
NZ_AP013042.1\|WP_066045465.1\|1309508_1310342_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|234731
NZ_AP013042.1\|WP_083502999.1\|1313785_1314553_+\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	unknown	unknown	gnl\|CDD\|238816
NZ_AP013042.1\|WP_066045483.1\|1316419_1316722_-\|ribosome-assembly-RNA-binding-protein-YhbY	unknown	unknown	gnl\|CDD\|198171
NZ_AP013042.1\|WP_066045468.1\|1310714_1311677_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_AP013042.1\|WP_066045495.1\|1319749_1320295_-\|ADP-compounds-hydrolase-NudE	unknown	unknown	gnl\|CDD\|183303
NZ_AP013042.1\|WP_066045480.1\|1315334_1316420_-\|lipid-A-disaccharide-synthase	unknown	unknown	gnl\|CDD\|234580
NZ_AP013042.1\|WP_066045491.1\|1319087_1319753_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_AP013042.1\|WP_066045511.1\|1322277_1322493_-\|DUF2892-domain-containing-protein	unknown	unknown	gnl\|CDD\|378561
NZ_AP013042.1\|WP_066045459.1\|1307950_1308970_+\|anthranilate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234682
NZ_AP013042.1\|WP_066045514.1\|1322495_1323833_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372604
NZ_AP013042.1\|WP_083503001.1\|1317690_1318932_-\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|143501
NZ_AP013042.1\|WP_066045462.1\|1308970_1309516_+\|oligoribonuclease	unknown	unknown	gnl\|CDD\|235429
NZ_AP013042.1\|WP_066045498.1\|1320313_1320580_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|379063
NZ_AP013042.1\|WP_157059398.1\|1320594_1321500_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_AP013042.1\|WP_083503000.1\|1314532_1315342_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|238806

Protein	Function_ID	Function_description	E-value
NZ_AP013042.1\|WP_066045471.1\|1311762_1313574_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NZ_AP013042.1\|WP_066045508.1\|1321864_1322278_-\|arsenate-reductase-ArsC	gnl\|CDD\|319973	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family. Arsenate reductase plays an important role in the reduction of intracellular arsenate to arsenite, an important step in arsenic detoxification. The reduction involves three different thiolate nucleophiles. In arsenate reductases of the LMWP family, reduction can be coupled with thioredoxin (Trx)/thioredoxin reductase (TrxR) or glutathione (GSH)/glutaredoxin (Grx).	8.39569e-47
NZ_AP013042.1\|WP_066045457.1\|1306730_1307954_+\|aminopeptidase-P-N-terminal-domain-containing-protein	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	9.5481e-123
NZ_AP013042.1\|WP_066045465.1\|1309508_1310342_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|234731	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	3.99197e-146
NZ_AP013042.1\|WP_083502999.1\|1313785_1314553_+\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	gnl\|CDD\|238816	cd01638, CysQ, CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family. It has been proposed that CysQ helps control intracellular levels of PAPS, which is an intermediate in cysteine biosynthesis (a principal route of sulfur assimilation).	1.58047e-87
NZ_AP013042.1\|WP_066045483.1\|1316419_1316722_-\|ribosome-assembly-RNA-binding-protein-YhbY	gnl\|CDD\|198171	smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome.	1.72063e-28
NZ_AP013042.1\|WP_066045468.1\|1310714_1311677_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NZ_AP013042.1\|WP_066045495.1\|1319749_1320295_-\|ADP-compounds-hydrolase-NudE	gnl\|CDD\|183303	PRK11762, nudE, adenosine nucleotide hydrolase NudE; Provisional.	1.99681e-104
NZ_AP013042.1\|WP_066045480.1\|1315334_1316420_-\|lipid-A-disaccharide-synthase	gnl\|CDD\|234580	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.	4.57903e-146
NZ_AP013042.1\|WP_066045491.1\|1319087_1319753_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.50955e-123
NZ_AP013042.1\|WP_066045511.1\|1322277_1322493_-\|DUF2892-domain-containing-protein	gnl\|CDD\|378561	pfam11127, DUF2892, Protein of unknown function (DUF2892). This family is conserved in bacteria. The function is not known.	9.20181e-05
NZ_AP013042.1\|WP_066045459.1\|1307950_1308970_+\|anthranilate-phosphoribosyltransferase	gnl\|CDD\|234682	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional.	0
NZ_AP013042.1\|WP_066045514.1\|1322495_1323833_-\|hypothetical-protein	gnl\|CDD\|372604	pfam13435, Cytochrome_C554, Cytochrome c554 and c-prime. This family is a tetra-haem cytochrome involved in the oxidation of ammonia. It is found in both phototrophic and denitrifying bacteria.	0.00774474
NZ_AP013042.1\|WP_083503001.1\|1317690_1318932_-\|diaminopimelate-decarboxylase	gnl\|CDD\|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NZ_AP013042.1\|WP_066045462.1\|1308970_1309516_+\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	1.06698e-119
NZ_AP013042.1\|WP_066045498.1\|1320313_1320580_-\|thioredoxin-family-protein	gnl\|CDD\|379063	pfam13192, Thioredoxin_3, Thioredoxin domain.	6.42635e-22
NZ_AP013042.1\|WP_157059398.1\|1320594_1321500_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	6.31965e-59
NZ_AP013042.1\|WP_083503000.1\|1314532_1315342_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|238806	cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.	8.86762e-124

>NZ_AP013042.1|WP_066045483.1|1316419_1316722_-|ribosome-assembly-RNA-binding-protein-YhbY
MNKLTNNQKKFLRARGHALKPIVMVGQHGLSESVLKELEISMTKHELLKIKIRAEDREDRQRMIDEIVNVTQAHLIQVIGAVMVIYRGFDEEPEIILPRK
>NZ_AP013042.1|WP_066045480.1|1315334_1316420_-|lipid-A-disaccharide-synthase
MKIAISAAETSGDLIGSKLVTALKAQNSDIQIQGLAGDKMIEAGCEQLWDQKRVNVMGLSEVLKKLPALLQLRKTIIDYFSKNKPDVFIGVDGPDFNFMIEKKLKRRGVKTVHFISPSVWAWRQSRVKKIKKSTDLVLCLFPFEVDFYQKHQQRALFVGHPLAETLHPRVNYQSSKKILLMPGSRVSEITRLLPEMLVATSIMAQQDAQLTFHLALANDELLAWAKPLAEKANVSISTGDAHQRMPESDLVLVASGTAALELALLGVPMVVVYKLSVFSYFIVSRLVKIEHVSLPNIIANKSLVPELIQDEANGANIAEKAMTILQNDSALLVQEFNAIHQQLNMNASEESARLISEFVNE
>NZ_AP013042.1|WP_083503000.1|1314532_1315342_-|carboxylating-nicotinate-nucleotide-diphosphorylase
MNKIIELALNEDIGSGDVSAHLLEDKIVSAQVIARESAIICGVEYAQAVFLSLDKDIQIEWHFKEGERIQAKQVLCTLSGASNSIISGERVALNFLQTLSAVATQTKTLVDKIAHTNAQLLDTRKTIPGLRLAQKQAVKCGGGVNHRIGLFDAIMLKENHIIAAGSITKAVQLAKDQYPDLPLIVEVEDLEQLTEVLGLTGITRALCDNFSITDLIQAVKLANHKLPLEASGNIDENTIVKVAETGVDYISTGSITKNIQAIDLSLRFS
>NZ_AP013042.1|WP_083502999.1|1313785_1314553_+|3'(2'),5'-bisphosphate-nucleotidase-CysQ
MMFDQILPSLIKLTTKVGDEILSHYKNDIKVEFKTDETPLTIADKNAHRAIAEALSKLTPNTPVLSEESTVVDFKERSKWTEYWLIDPLDGTKDFIERTGEFCICIAYIKNHRAIFGLVYAPITRVHYYGFEGVAYKYHQNIQTIINACMKKQPLRIVTGHHSSNNSKLKAHFATLGEYELNNLGSALKFCEIAQGHYDYYPRFGPCSEWDTAAGGCILQNAGGLVVDENGKPLRYNTQDSLLSPPFFASGKPKG
>NZ_AP013042.1|WP_066045471.1|1311762_1313574_+|RNA-polymerase-sigma-factor-RpoD
MKSTTKAHKQALQNLITVGKDKGYLTYAELNDMLPEDLLTQDQIEPIVSILEELDIIVSETVPDADTLVVESGAKAQSTSAEAATAALAALDSEFGRTTDPVRMYMREMGVVDLLEQEDEIRIAKEIEEGIFEIMQAITLYPSITDLFFKAHMRLEEGKCKMTDVIIGYQNDAQDFAKKKAAFDSGEFDDDDEYADMEEMEYTGPDEDQVYLRYDKILKAAKKYEDTNKEYGLHDKKTISTRTALAKNLSDLRLAPKLVSTMVDVVCERIAKVKKQEKIIQNACLYADMERKQFFDLFTDNETNFDWLKNAKLDKKVKDKLADSEDKIYYAQKNLKEYEEEMQLTIAELKAINKLYRRGDRRAKTAKAQMIEANLRLVISIAKKYANRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVKRQLLQKYGREASPEELSVEMELPESKIIKILKIAKEPLSMETPVGDDEDSNIGDFIEDINLSSPVETTTKESLRETTGDLLANLSSREAKVLKMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPSRAHKLASFLE
>NZ_AP013042.1|WP_066045468.1|1310714_1311677_+|ribose-phosphate-pyrophosphokinase
MSLDKIKIFSGNANPQLSGEIISNLNVIQGKALVSKFSDGEARVEILENVRGCDVFVLQPTCGPSPAETLMELLVIVDALKRSSASRITAVVPYLGYSRQDRRSRLTRVPITAKLAAKMIEAAGVDRILTVDLHADQIQGFFNIPIDNIYAQPVLIEDILAQNYKDIVVVSPDVGGVVRARAAAKRLNDADLAIIDKRRPEANVVEVMNVIGKVKGRTCVLIDDMVDTAGTLCQAAAILKERGAKKVVAYATHAVLSGKAIVNINNSELDELVATNTIPLSAPATNCKKIRQLSLAPKLAEVIKRISEEQSISTIFSDAK
>NZ_AP013042.1|WP_066045465.1|1309508_1310342_+|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MSKTWLSPAKINLFLHINSKREDGYHNLQTIFQLLDYYDELTFEIRQDGVISRISGNETVPEAEDLIIRAAKALQKSTGTALGADISVLKKIPAGGGLGGGSSNAATTLLALNQLWNTKYSTKQLSEIGLSLGADVPIFIAGHSAWAEGVGEALTPICLPKHHFLVVCINKHISTKKIFSHKALTMTPIIGKIQPFSELINPHNDCLEAAIELEDEILEALTHLKLSENYLYEPRMTGTGCCVFVAFENEKDALVALRNVPRQWLGFVAKAIDTLPK
>NZ_AP013042.1|WP_066045462.1|1308970_1309516_+|oligoribonuclease
MSNKETNLIWIDLEMTGLLPESDVIIEIATIVTDKDLNILAEGPALAIHQSDVLLDKMDEWNTEHHTNSGLVKRVKESTTSTLQAEIKTIEFLQQWVDKGASPMCGNTICQDRRFLYNAMPKLEKFFHYRHIDVSTLKELIKRWKPEAALEREGESEHLALADIRESIRELKHYRKTFINV
>NZ_AP013042.1|WP_066045459.1|1307950_1308970_+|anthranilate-phosphoribosyltransferase
MNIQEAIKAVIAKQDLTQEQMHSVMSDIMTGKTEDAQIGGFLVGLSMKGETVAEITAAAKVMRSLATQVNLKNPKHLVDTCGTGGDGLGLFNISTACAFVVAAAGAQVAKHGNRSISSKSGSADVLEAAGVNLDMTPEEISKSVEKIGVGFMFAPAHHSAMKHAIGARKSLAVRTIFNVLGPLTNPAKAPHQVMGVYDKNLVEPIANVLKSLGSKQVMVVHSKDGLDEISIADDTFVAELKDGKVTTYTINPTDFGLPLGDLNDIKAEDAESSLLLIQNALDGTDGAAKNIVALNAGAAIYVSGVVDSLQAGVNKAMKILNSGVAHQKLDDFVKESTGC
>NZ_AP013042.1|WP_066045457.1|1306730_1307954_+|aminopeptidase-P-N-terminal-domain-containing-protein
MTNQHRQKKLLSQLKDGALVIIATNPEQTRNGDVHYPFRPHSDFWYLTGFTEPESVAVFSREGYTIFLREKDQKRQIWDGERLGVKSALEVLKADYAYSIDALKTQLPQLIKNATTVYYDFKPCKLDDDIMECLATTQTQSLGEYLHEMRLIKDDNEIALMQKAADISVETHQLAMQETAPKLFEYEIASIFDGNFRKYNAEHAYTPIVAGGKNACVLHYIQNNKVLNEGELLLIDAGCEVEGYASDITRTFPINGIFSGAQQQIYQLVLDAQLAAIAAIKPGVAITTPHNIATEIIQQGLIDLGILTKNGDVKQFYMHGTGHWLGMDVHDVGCYQQGKQDREYEIGMVTTVEPGIYIRKSDKINPIYWDIGVRIEDNILVIKGGNRVLTQALEKEIDDIEKIMETQ
>NZ_AP013042.1|WP_083503001.1|1317690_1318932_-|diaminopimelate-decarboxylase
MSFSYQNQTLHAESIAIMELMDAYGSPLYVYSRTDIENNWREFDQAFGAHPHLVCYAVKANSNIAVLNVLAKLGSGFDIVSIGELERVLKAGGEASKCVFSGVAKTVIEIERALEVGVRCFNVESESELDRINTVAKSIGKKAPISIRVNPNVDAKTHPYISTGLKENKFGVDIGEAIDLYKKANNADYLEVQGLDCHIGSQITDVSPFLDALDKVLALVWQLNDEGISIHHLDLGGGVGIDYDGEQTINIKAYIDAIINKVGQTEIILEPGRAIVGNAGIFVTKVEFLKQNSEHSFAIVDGAMNDLLRPSFYNAYHQVLPVNENATGTKAQWDLVGPICETGDFLAKNRDLSLSEGDYLALMSAGAYGFSMSSNYNSRPRVAEVMVSGENHQLVRKRESVQDLFAKERLYEG
>NZ_AP013042.1|WP_066045491.1|1319087_1319753_-|leucyl/phenylalanyl-tRNA--protein-transferase
MIEIPPSFFLKSPSTPFPDASLALDEPNGLIAIGGDLSSERLISAYQQGIFPWYSDNEPVIWYSPNPRMIITPEALHIAKSLGKTLRSNQFEVRINADFDSVIRHCKSVIRKDQTGTWIDADMVRAYTELYHQGVVQSVEVYQNDVLVGGLYGVRMGRVFFGESMFSKVSNASKIAFVHLVKNMDYEMIDCQVESTHLKSLGAFNIPRDVFIQKLQKLLLK
>NZ_AP013042.1|WP_066045495.1|1319749_1320295_-|ADP-compounds-hydrolase-NudE
MKKKPIVTNIKNIATTKFFNIQSMDIEFSNGEKRQYERLKPDGDGAVLVIPMLDDDTVLMIYEYSGGTDRYELALTKGKIDAGESPIEAANRELIEEIGYGARQLSFVKTMTLAPGYQSNFTHIILAQDLYKDSAQGDEPEPLEVVKHKLSDLENLVYNEDLTEARTIAALYMAKEIIRNQ
>NZ_AP013042.1|WP_066045498.1|1320313_1320580_-|thioredoxin-family-protein
MIEVKVLGTGCANCKATQKLIEKVCSDNAIPISIEKIEDTAQIMSYGIMSTPGVVVDGKIAHAGGIPDAKTVLSWFKSQCCPTDNDCC
>NZ_AP013042.1|WP_157059398.1|1320594_1321500_-|sulfurtransferase
MRILISFILVLISQFALANRDFLIDSDWLSERIEDKNIRVLEVRYHPHRYFTIGHIPGAVQVQRFKDLGDNNANPIMRFPSKKAFEDTLRRWGINNDSTIVIYDDSGTALASRVYFLLELYGFNMNQVKILNGGSRAWNSFEDMTTETTRVSRGNVVLQEKNPNLFIEWQDVYGDVVSERDKNIVLLDARPHKMYTGEVIKHSILAGHIPGAINIVSMKGISAQEWIDEKGLIDLYAQIPKDKTIYVYCHDGFRMSLAYLQLKSLGYKHVKLYNGGWSHWGNRLTLPTVEDEAPYAGDYEL
>NZ_AP013042.1|WP_066045504.1|1321517_1321769_-|hypothetical-protein
MASFKPNYIIPGHRHITNLVEASKDTYDYLVFLRDEIRKVVANDDCIMIATNINQDKFNYLKILKALQEKMPNNVFLQLEFEN
>NZ_AP013042.1|WP_066045508.1|1321864_1322278_-|arsenate-reductase-ArsC
MHEKKYLILCTGNSCRSIIAEALLNYDLSYCVNAYSAGVAASGKVNPNAEKILKQNNMWSENYHSKAIETILGVKFDLVVTVCGNAQETCPTFPGKTEVIHIGFDDPDGQAFDVFKQTFMQIREKLVPVVSDKLCLS
>NZ_AP013042.1|WP_066045511.1|1322277_1322493_-|DUF2892-domain-containing-protein
MTINNAVNFMAGSVVTLGLALAHFNGTIDITNTSWLWLSAFVGLNLMQMAITGFCPAKFIFKLLGLKDTKG
>NZ_AP013042.1|WP_066045514.1|1322495_1323833_-|hypothetical-protein
MKKYYKNWILLILIVITGQSVIAIAAPDPLKDPKYCGSCHQRIYKEWSGSLMGKDLNNSIVYQFYTGTNPAGKKDGLGFQPLMHGKNGDCADCHVPELALEKHAKGEEVDLGIAMKQKLDHGISCNFCHSIADVHINKDKNGRYNTRIFETVTMDHSGVKYGPRADAKSLAHPTMKSDLIRDSKLCGTCHLNQEKFLSISQYDDWKKAYTSGKTNQTCQQCHMPILPGRHKLATVTGLNNPKRITRAHTFVGAHDTEMLKKALTLEVKPEVKNGKLIVNTTVENVGAGHKVPGSGPIRNVILKIEVTDVDGKILNYIGDKRGLLPPLAGFGNPKTKKRGPNDWAGKPGKMYAKVYKSKPIAKMGNRSMVGVGGFLADAVVFDTALKPREPDHAKFVYALPKNTKSIKIKARIVYRDAFKPLSDKKGWKLAQREMITVNKIFNLKE
>NZ_AP013042.1|WP_066045517.1|1323881_1324568_-|hypothetical-protein
MKKYLLGSILITLSISSIASDFACKVPVQSFGNIKKMTAGDFSPNVLFKDVKLSNTSVGYGPGADHQYELTIVNGVVYMARPGKDDEVMMRTILKEADGAAMLQIATPKAWKLYGEMDDIDSFNGLAFEMDDVVEEIECGENVLMPFKIIGYANSLTWSMDTENPRVVNSKNQSVEVVGLYNVNNKQKYFMVKGYNIHPHVLLTNLGEAGHLRNISLQAGAKLYLPQK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_AP013042_1	1.2\|1076990\|29\|NZ_AP013042\|CRISPRCasFinder	1076990-1077018	29	NZ_AP013042.1	1372282-1372310	0	1.0
NZ_AP013042_1	1.2\|1076990\|29\|NZ_AP013042\|CRISPRCasFinder	1076990-1077018	29	NZ_AP013042.1	1394063-1394091	0	1.0

1. spacer 1.2|1076990|29|NZ_AP013042|CRISPRCasFinder matches to position: 1372282-1372310, mismatch: 0, identity: 1.0

ttcggcagtcgccttagtcggtggtggct	CRISPR spacer
ttcggcagtcgccttagtcggtggtggct	Protospacer
*****************************

2. spacer 1.2|1076990|29|NZ_AP013042|CRISPRCasFinder matches to position: 1394063-1394091, mismatch: 0, identity: 1.0

ttcggcagtcgccttagtcggtggtggct	CRISPR spacer
ttcggcagtcgccttagtcggtggtggct	Protospacer
*****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP013042_1	1.2\|1076990\|29\|NZ_AP013042\|CRISPRCasFinder	1076990-1077018	29	NZ_CP034999	Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence	608450-608478	7	0.759
NZ_AP013042_1	1.1\|1076924\|29\|NZ_AP013042\|CRISPRCasFinder	1076924-1076952	29	NC_019760	Microcoleus sp. PCC 7113 plasmid pMIC7113.02, complete sequence	24629-24657	8	0.724

1. spacer 1.2|1076990|29|NZ_AP013042|CRISPRCasFinder matches to NZ_CP034999 (Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence) position: , mismatch: 7, identity: 0.759

ttcggcagtcgccttagtcggtggtggct	CRISPR spacer
ggcaacagtcgccttagtcggaggtgctt	Protospacer
  *..**************** **** .*

2. spacer 1.1|1076924|29|NZ_AP013042|CRISPRCasFinder matches to NC_019760 (Microcoleus sp. PCC 7113 plasmid pMIC7113.02, complete sequence) position: , mismatch: 8, identity: 0.724

aaataaatatgtgcaaagacattctggct	CRISPR spacer
caataaagatgtgcaaagccattcacctg	Protospacer
 ****** ********** *****   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

392238 : 400681

Erysipelothrix_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066043481.1\|392238_393570_-	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	2.4e-39	26.8
WP_066043483.1\|393910_394645_-	glutathione peroxidase	A0A1D8KSL1	Synechococcus_phage	7.9e-45	56.0
WP_066043486.1\|394748_395585_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_070104546.1\|395601_396399_-	N-acetylmuramoyl-L-alanine amidase	A0A223VZK2	Agrobacterium_phage	1.4e-07	28.4
WP_083502953.1\|396459_397554_-	peptide chain release factor 2	W8EDB3	Pseudomonas_phage	1.1e-05	37.8
WP_173636500.1\|397627_397894_-	30S ribosomal protein S15	NA	NA	NA	NA
WP_066043492.1\|397960_398857_-	lipid A biosynthesis acyltransferase	A0A1W6JP29	Morganella_phage	2.5e-37	34.0
WP_066043494.1\|398875_400681_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.1e-58	35.1

DBSCAN-SWA_2

862995 : 881560

Lake_Baikal_phage(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066044582.1\|862995_863604_+	guanylate kinase	K4JYM5	Abalone_herpesvirus	1.0e-21	35.5
WP_066044584.1\|863611_864451_+	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	9.0e-37	39.4
WP_066044586.1\|864473_864761_+	co-chaperone GroES	A0A221S4G8	uncultured_virus	4.8e-14	45.7
WP_066044589.1\|864772_866410_+	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	3.3e-176	62.4
WP_066044591.1\|866519_868403_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	7.9e-89	35.3
WP_066044593.1\|868395_869073_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	4.7e-28	35.6
WP_066044594.1\|869149_869377_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	7.6e-07	40.5
WP_066044596.1\|869441_870680_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_066044598.1\|870756_870981_-	hypothetical protein	NA	NA	NA	NA
WP_066044600.1\|871015_872968_-	M3 family metallopeptidase	A0A1V0SID3	Klosneuvirus	1.9e-45	24.2
WP_066044603.1\|873260_875252_-\|tRNA	methionine--tRNA ligase	A0A1V0SEZ7	Hokovirus	1.3e-41	23.1
WP_066044605.1\|875332_876403_+	iron-sulfur cluster carrier protein ApbC	A0A1X9I5D6	Streptococcus_phage	1.8e-05	32.2
WP_066044607.1\|876414_876840_+	hypothetical protein	NA	NA	NA	NA
WP_066044609.1\|876882_877221_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_066044611.1\|877245_879093_-	Fe-S protein assembly chaperone HscA	F2Y2E1	Organic_Lake_phycodnavirus	4.6e-110	41.4
WP_066044612.1\|879096_879609_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_066044613.1\|879618_879942_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	5.4e-22	49.1
WP_066044614.1\|879948_880326_-	Fe-S cluster assembly scaffold IscU	A0A2H4N7M4	Lake_Baikal_phage	3.5e-49	75.8
WP_066044615.1\|880345_881560_-	IscS subfamily cysteine desulfurase	H7BUW1	unidentified_phage	1.8e-30	36.5

DBSCAN-SWA_3

895658 : 903551

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066044639.1\|895658_896147_+	single-stranded DNA-binding protein	A0A2I7RK19	Vibrio_phage	4.0e-45	67.3
WP_066044641.1\|896218_896626_-	HIT family protein	D7NW73	Streptomyces_phage	2.6e-13	37.6
WP_066044645.1\|897146_900800_+	methionine synthase	A0A140XBC7	Dickeya_phage	8.0e-21	71.4
WP_157059388.1\|900805_900961_-	hypothetical protein	NA	NA	NA	NA
WP_066044647.1\|900957_901383_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_066044649.1\|901383_901863_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	6.7e-29	45.4
WP_066044651.1\|901872_902952_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	6.8e-61	38.4
WP_066044654.1\|902957_903551_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.6e-24	37.8

DBSCAN-SWA_4

1137581 : 1150786

Bacillus_virus(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066045103.1\|1137581_1137815_-	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.9e-29	71.3
WP_066045105.1\|1137918_1138890_+	peptidylprolyl isomerase	A0A1V0S9I2	Catovirus	3.5e-24	47.9
WP_066045107.1\|1138909_1139995_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA
WP_066045109.1\|1140006_1140453_+	dCMP deaminase family protein	A0A2H4N7Q7	Lake_Baikal_phage	6.0e-48	62.7
WP_066045111.1\|1140454_1142023_+	peptide chain release factor 3	A0A1S5SF82	Streptococcus_phage	2.4e-30	27.5
WP_066045113.1\|1142038_1142971_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_066045115.1\|1142973_1143240_-	type II toxin-antitoxin system RelE/ParE family toxin	X2KQ37	Campylobacter_phage	3.0e-10	36.5
WP_066045116.1\|1143223_1143448_-	TraY domain-containing protein	NA	NA	NA	NA
WP_066045118.1\|1143542_1146122_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	6.7e-99	31.0
WP_066045120.1\|1146229_1147297_-	3-deoxy-7-phosphoheptulonate synthase	A0A2I6UFP9	Klebsiella_phage	1.2e-81	52.5
WP_066045121.1\|1147290_1148088_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA
WP_066045123.1\|1148096_1148468_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.8e-13	36.1
WP_066045125.1\|1148548_1150786_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	2.9e-82	30.4

DBSCAN-SWA_5

1240435 : 1252311

Escherichia_phage(12.5%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066045308.1\|1240435_1242124_+\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	3.5e-205	63.6
WP_066045310.1\|1242120_1243866_-	phosphoethanolamine transferase	NA	NA	NA	NA
WP_066045312.1\|1243838_1244588_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.3e-62	49.4
WP_066045314.1\|1244584_1246810_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.8e-170	43.7
WP_066045316.1\|1246818_1247112_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	7.8e-12	37.5
WP_066045318.1\|1247195_1248770_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.4e-17	29.4
WP_066045320.1\|1248772_1249231_+\|tRNA	tRNA adenosine(34) deaminase TadA	A0A0B5J096	Pandoravirus	5.0e-05	37.5
WP_066045322.1\|1249239_1249986_-	3-oxoacyl-ACP reductase FabG	A0A0N9R355	Chrysochromulina_ericina_virus	3.0e-07	24.2
WP_173636502.1\|1249982_1250918_-	ACP S-malonyltransferase	NA	NA	NA	NA
WP_066045325.1\|1250991_1251249_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_066045328.1\|1251262_1251574_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_083502997.1\|1251672_1252311_+	peptidyl-prolyl cis-trans isomerase	A0A1V0S9I2	Catovirus	1.9e-10	37.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP013042

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection