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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_AP013042 Endosymbiont of Bathymodiolus septemdierum str. Myojin knoll isolate A1 2 crisprs cas3,DEDDh,csa3,cas6,DinG,cas2,cas1,cas9 1 2 5 0

Results visualization

1. NZ_AP013042
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP013042_1 1076887-1077055 TypeII NA
2 spacers
cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP013042_2 1317388-1317531 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_AP013042_1 1.2|1076990|29|NZ_AP013042|CRISPRCasFinder 1076990-1077018 29 NZ_AP013042.1 1372282-1372310 0 1.0
NZ_AP013042_1 1.2|1076990|29|NZ_AP013042|CRISPRCasFinder 1076990-1077018 29 NZ_AP013042.1 1394063-1394091 0 1.0

1. spacer 1.2|1076990|29|NZ_AP013042|CRISPRCasFinder matches to position: 1372282-1372310, mismatch: 0, identity: 1.0

ttcggcagtcgccttagtcggtggtggct	CRISPR spacer
ttcggcagtcgccttagtcggtggtggct	Protospacer
*****************************

2. spacer 1.2|1076990|29|NZ_AP013042|CRISPRCasFinder matches to position: 1394063-1394091, mismatch: 0, identity: 1.0

ttcggcagtcgccttagtcggtggtggct	CRISPR spacer
ttcggcagtcgccttagtcggtggtggct	Protospacer
*****************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_AP013042_1 1.2|1076990|29|NZ_AP013042|CRISPRCasFinder 1076990-1077018 29 NZ_CP034999 Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence 608450-608478 7 0.759
NZ_AP013042_1 1.1|1076924|29|NZ_AP013042|CRISPRCasFinder 1076924-1076952 29 NC_019760 Microcoleus sp. PCC 7113 plasmid pMIC7113.02, complete sequence 24629-24657 8 0.724

1. spacer 1.2|1076990|29|NZ_AP013042|CRISPRCasFinder matches to NZ_CP034999 (Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence) position: , mismatch: 7, identity: 0.759

ttcggcagtcgccttagtcggtggtggct	CRISPR spacer
ggcaacagtcgccttagtcggaggtgctt	Protospacer
  *..**************** **** .*

2. spacer 1.1|1076924|29|NZ_AP013042|CRISPRCasFinder matches to NC_019760 (Microcoleus sp. PCC 7113 plasmid pMIC7113.02, complete sequence) position: , mismatch: 8, identity: 0.724

aaataaatatgtgcaaagacattctggct	CRISPR spacer
caataaagatgtgcaaagccattcacctg	Protospacer
 ****** ********** *****   . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 392238 : 400681 8 Erysipelothrix_phage(16.67%) NA NA
DBSCAN-SWA_2 862995 : 881560 19 Lake_Baikal_phage(14.29%) tRNA NA
DBSCAN-SWA_3 895658 : 903551 8 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_4 1137581 : 1150786 13 Bacillus_virus(22.22%) NA NA
DBSCAN-SWA_5 1240435 : 1252311 12 Escherichia_phage(12.5%) protease,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage