CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP013044	Tannerella forsythia 3313	2 crisprs	csm3gr7,csx10gr5,csx19,csx1,csx20,PD-DExK,WYL,cas3,cas6,cas5,cas8b4,cas7b,cas4,cas10,csm2gr11,csm4gr5,csm5gr7,cas1,cas2,DEDDh,DinG	2	2	4	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP013044_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP013044_1

370260-370561

Orphan

Consensus_repeat	Method
CGCATTATTTTAGCCCAATGTGCAGCGAAGCGGAGCGTTGGGGGCAATG	PILER-CR

3 spacers

The CRISPR arrays of NZ_AP013044_1

>merge|NZ_AP013044|1|370260-370561|PILER-CR
CGTATTATTTTAGCCCAATGTGCAGCGAAGCGGAGCGTTGGGGGCAATGCCGAGTATATCATCAATACCCGAGAGGCAAAGTCCTCGCATTATTTTAGCCCAATGTGCAGCGAAGCGGAGCGTTGGGGGCAATGAGGCTTTGCCCCTTGGGTATTGATGATATACTCGGCGCATTATTTTAGCCCAATGTGCAGCGAAGCGGAGCGTTGGGGGCAATGAGGCTTTGCCCCTTGGGTATTGATGATATACTCGGCGCATTATTTTAGCCCAATGTGCAGCGAAGCGGAGCGTTGGGGGCAATG

>NZ_AP013044|1|1|370260-370561|PILER-CR
CGTATTATTTTAGCCCAATGTGCAGCGAAGCGGAGCGTTGGGGGCAATG	CCGAGTATATCATCAATACCCGAGAGGCAAAGTCCT
CGCATTATTTTAGCCCAATGTGCAGCGAAGCGGAGCGTTGGGGGCAATG	AGGCTTTGCCCCTTGGGTATTGATGATATACTCGG
CGCATTATTTTAGCCCAATGTGCAGCGAAGCGGAGCGTTGGGGGCAATG	AGGCTTTGCCCCTTGGGTATTGATGATATACTCGG
CGCATTATTTTAGCCCAATGTGCAGCGAAGCGGAGCGTTGGGGGCAATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP013044.1\|WP_060827216.1\|361902_363267_-\|TIGR00341-family-protein	unknown	unknown	gnl\|CDD\|377221
NZ_AP013044.1\|WP_155642495.1\|366248_367313_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_AP013044.1\|WP_172794543.1\|374379_375855_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_AP013044.1\|WP_060827215.1\|359755_361906_-\|S46-family-peptidase	unknown	unknown	gnl\|CDD\|371067
NZ_AP013044.1\|WP_014223848.1\|379114_379960_+\|GLPGLI-family-protein	unknown	unknown	gnl\|CDD\|273495
NZ_AP013044.1\|WP_060827224.1\|386411_388172_+\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|369630
NZ_AP013044.1\|WP_155642387.1\|368575_368764_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013044.1\|WP_060827219.1\|368846_370016_+\|6-bladed-beta-propeller	unknown	unknown	gnl\|CDD\|375027
NZ_AP013044.1\|WP_046825906.1\|363263_364778_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240533
NZ_AP013044.1\|WP_014223850.1\|382189_382822_-\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NZ_AP013044.1\|WP_081094455.1\|380095_382015_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|369481
NZ_AP013044.1\|WP_041590573.1\|383103_386379_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|274948
NZ_AP013044.1\|WP_155642388.1\|375855_379044_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_AP013044.1\|WP_060827222.1\|371229_374322_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_AP013044.1\|WP_060827221.1\|370610_371057_+\|transposase	unknown	unknown	gnl\|CDD\|376616
NZ_AP013044.1\|WP_060827217.1\|367358_368525_+\|6-bladed-beta-propeller	unknown	unknown	gnl\|CDD\|375027
NZ_AP013044.1\|WP_014223838.1\|364783_365815_-\|Holliday-junction-branch-migration-DNA-helicase-RuvB	unknown	unknown	gnl\|CDD\|234619
NZ_AP013044.1\|WP_060827225.1\|388376_388826_-\|GatB/YqeY-domain-containing-protein	unknown	unknown	gnl\|CDD\|370480
NZ_AP013044.1\|WP_060827214.1\|357522_358608_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374184
NZ_AP013044.1\|WP_014223834.1\|358746_359739_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133016

Protein	Function_ID	Function_description	E-value
NZ_AP013044.1\|WP_060827216.1\|361902_363267_-\|TIGR00341-family-protein	gnl\|CDD\|377221	pfam04087, DUF389, Domain of unknown function (DUF389). Family of hypothetical bacterial proteins with an undetermined function.	1.7286e-60
NZ_AP013044.1\|WP_155642495.1\|366248_367313_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	9.11978e-26
NZ_AP013044.1\|WP_172794543.1\|374379_375855_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	3.53345e-24
NZ_AP013044.1\|WP_060827215.1\|359755_361906_-\|S46-family-peptidase	gnl\|CDD\|371067	pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7 (DPP-7) is the best characterized member of this family. It is a serine peptidase that is located on the cell surface and is predicted to have two N-terminal transmembrane domains.	0
NZ_AP013044.1\|WP_014223848.1\|379114_379960_+\|GLPGLI-family-protein	gnl\|CDD\|273495	TIGR01200, conserved_hypothetical_protein, GLPGLI family protein. This protein family was first noted as a paralogous set in Porphyromonas gingivalis, but it is more widely distributed among the Bacteroidetes. The protein family is now renamed GLPGLI after its best-conserved motif.	1.53538e-30
NZ_AP013044.1\|WP_081094455.1\|380095_382015_+\|TonB-dependent-receptor	gnl\|CDD\|369481	pfam07715, Plug, TonB-dependent Receptor Plug Domain. The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.	0.00253558
NZ_AP013044.1\|WP_060827219.1\|368846_370016_+\|6-bladed-beta-propeller	gnl\|CDD\|375027	pfam17170, DUF5128, 6-bladed beta-propeller. This family is a 6-bladed beta-propeller structure of unknown function. There is a highly conserved FDxxG motif which might be important.	1.31899e-09
NZ_AP013044.1\|WP_046825906.1\|363263_364778_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	6.55973e-20
NZ_AP013044.1\|WP_014223850.1\|382189_382822_-\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	1.43764e-52
NZ_AP013044.1\|WP_060827224.1\|386411_388172_+\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|369630	pfam07980, SusD_RagB, SusD family. This domain is found in bacterial cell surface proteins such SusD and SusD-like proteins, as as well RagB, outer membrane surface receptor antigen. Bacteroidetes, one of the two dominant bacterial phyla in the human gut, are Gram-negative saccharolytic microorganisms that utilize a diverse array of glycans. Hence, they express starch-utilization system (Sus) for glycan uptake. SusD has 551 amino acids, and is almost entirely alpha-helical, with 22 alpha-helices, eight of which form 4 tetra-trico peptide repeats (TPRs: helix-turn-helix motifs involved in protein-protein interactions). The four TPRs pack together to create a right-handed super-helix. This is predicted to mediate the formation of SusD and SusC porin complex at the cell surface. The interaction between SusC and TPR1/TPR2 region of SusD is predicted to be of functional importance since it allows SusD to be in position for oligosaccharide capture from other Sus lipoproteins and delivery of these glycans to the SusC porin. The non-TPR containing portion of SusD is where starch binding occurs. The binding site is a shallow surface cavity located on top of TPR1. SusD homologs such as SusD-like proteins have a critical role in carbohydrate acquisition. Both SusD and its homologs, contain about 15-20 residues at the N-terminus that might be a flexible linker region, anchoring the protein to the membrane and the glycan-binding domain. Other homologs to SusD have been examined in Porphyromonas gingivalis such as RagB, an immunodominant outer-membrane surface receptor antigen. Structural characterization of RagB shows substantial similarity with Bacteroides thetaiotaomicron SusD (i.e alpha-helices and TPR regions). Based on this structural similarity, functional studies suggest that, RagB binding of glycans occurs at pockets on the molecular surface that are distinct from those of SusD.	5.29067e-27
NZ_AP013044.1\|WP_041590573.1\|383103_386379_+\|TonB-dependent-receptor	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NZ_AP013044.1\|WP_155642388.1\|375855_379044_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	5.79834e-101
NZ_AP013044.1\|WP_060827222.1\|371229_374322_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	1.00801e-173
NZ_AP013044.1\|WP_060827221.1\|370610_371057_+\|transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	1.18679e-14
NZ_AP013044.1\|WP_060827217.1\|367358_368525_+\|6-bladed-beta-propeller	gnl\|CDD\|375027	pfam17170, DUF5128, 6-bladed beta-propeller. This family is a 6-bladed beta-propeller structure of unknown function. There is a highly conserved FDxxG motif which might be important.	1.99203e-27
NZ_AP013044.1\|WP_014223838.1\|364783_365815_-\|Holliday-junction-branch-migration-DNA-helicase-RuvB	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
NZ_AP013044.1\|WP_060827225.1\|388376_388826_-\|GatB/YqeY-domain-containing-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	4.28079e-40
NZ_AP013044.1\|WP_060827214.1\|357522_358608_+\|hypothetical-protein	gnl\|CDD\|374184	pfam15869, TolB_like, TolB-like 6-blade propeller-like.	8.56095e-06
NZ_AP013044.1\|WP_014223834.1\|358746_359739_-\|glycosyltransferase	gnl\|CDD\|133016	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.	6.15916e-46

>NZ_AP013044.1|WP_060827219.1|368846_370016_+|6-bladed-beta-propeller
MKKIILFFIVILIASCTDTDSATHIITVDVSKQYPEKNMLVEDIAEIEYIAPETKDDYLFSYILDISENFIIGGNHVENSFIFFSRETGKPVSKINRYGNGPEEYNLAAASVYSEKDDEFFILNYPSGINVYGRDGTYKRKLKFRERSYLGGPEAFYDYDSDNLLFYDGFQGDINDYPTAFVLLSKKDGSITKEIPIAYEKKVSLMFTQKTDGNALVGSMPDVYFAVYNDNDFLLTDYSTDTVYRFTQNQELIPVLIRKPSIQTMEPKTILHSWLETDQYLFLSTNKLEIDWNDPSEFAGKSLLVEKSSGDIYEAVVRMKDYKDKNLILGPGVLSRSLKDSQTGYIVLPAAELLEALANEKLSGKLKEIASTLNEESNPVIMLMKYKKN
>NZ_AP013044.1|WP_155642387.1|368575_368764_+|hypothetical-protein
MIHTMIKSGFQPSVLYDTFLPKAYAIGLKYIGLSVLQKQIFTNKIRSRKEYIQKVEALYYFS
>NZ_AP013044.1|WP_060827217.1|367358_368525_+|6-bladed-beta-propeller
MKRINVISAFLFSICISACTGGNKQKADDYIIVDVTANYPKKEFTLQDLMDVEYIPLETTDTFTTQGVVKAIGKNLILITNRNMDGDIFVYERTTGKGQRKINRRGQGPEEYSQVNSIVLDEEHHEMFIVDYPARKILVYDLEGNFKRDFTFEDTSYYHDISDYDTKYLIAYKGYSPGIENEEANHILISKQDGKVVRELSVSIKTIKTPVFIEGEMVITPGFCQTLPLSEHCILMRTSSDTIYNYSDDNIRPFIIRTPSIYTMDPEVFLFVTAADDRYYFMQTMKKELDLNTFKGFPTTDLVYDRQEKALFECTIYNDDFTNKKEVSLKPAPGRTNNREIAACIALEASGLIEAYQKNELKGHLKEIASTLNEESNPVIMLMKYRKN
>NZ_AP013044.1|WP_155642495.1|366248_367313_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MTAWGITALFAACNADKQAKTEENVRQLLPDAPAEVTVIPLKTVDFEHELVSNGKISARTVAEVKFQTSEIIADVFVANGDRVTKGQRIAALETYALNNKLEQAKDALERSKLEMHDVLIGQGYKLDNLSAVPDEVMRLAKIKSGFNNAQTNYSMADYDLKQATLVAPVNGIVANLFAKPKTLSKPSEVFCNIIDTQSLEVVFTVLENELGFVRKGDNVKVVPYSMPDVEIKGRVSEINPWVNENGMVQIKATVSYHPQLVEGMNVRVSAFRSVGKQWVVPKTAVVLRTGKQVVFTVVDGKAVWNYVQTGLENATEYTVTGETLKEGDPVIVTGNINLAHESPVKVIQDEKNKE
>NZ_AP013044.1|WP_014223838.1|364783_365815_-|Holliday-junction-branch-migration-DNA-helicase-RuvB
MKEEFDIHKAGNTMPETEREYENALRPLSFESFSGQPEAVENLKVFVAAARMRQEALDHVLLHGPPGLGKTTLSNIISNELDVGFKVTSGPVLDKPGDLAGLLTSLEKNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDILIDKGPSARSIQIDLAPFTLIGATTRSGLLTGPLRARFGINLHLEYYDTETLTKIILRSANILNIGCAVDAAREIASRSRGTPRIANALLRRVRDFAQVKGSGKIDKAIACYALEALHIDRYGLDQIDNKILTLLIEKFHGGPVGLTTIATALSEDPGTLEEVYEPFLIQEGFLKRTPRGREVTALAYEHLGKAIAGRPGDLFQ
>NZ_AP013044.1|WP_046825906.1|363263_364778_-|polysaccharide-biosynthesis-protein
MAEGMKRLAKETAIYGLSSMIGRFLNWMLVPMYTRVLTDTGEYGIITNLYGWTALLLILLTGGMETGFFRFIHKTDEREPMRVYASTLGFVGVTSFLFALSMWVFLFPVSEALGYSDHPEYIGMMAGIVAVDAFCCIPFAYLRYRNKAIRFAMIKLLSIFLNIFLNIFFLVLCPLIDASYPEWIGWFYRPGYGVGYVIIANVFTTVFTFLMLLPDMMPGLRVRPDMQRLRKMIGYSFPILILGIAGIFNQTADKILFPFLFDDKAYADSQLGIYGACFRIAVVMVMFIQAFRYAYEPFIFAKHKDADNKKSYVEAMKYFIIFALFIFLGVMFYLDLLKHFVDAKYYDGLRVIPLVMLGELFFGIYFNLSIWYKLTDRTQWGAYFSVAGCTLTIAIIVLFVPSYGFMACAWASFASNLLMMLLSYAVGQKYYPVAYDLRSAFTYGAVAAVCYMAAMLPPIDSVVLRLLYRTVWLLFFTGIVVRKDLPITEIPYLSRYFGHIKKIK
>NZ_AP013044.1|WP_060827216.1|361902_363267_-|TIGR00341-family-protein
MMENTLYRQIKTYLTRHFDVRQEKEDEIETIESLKKGVEFRGTNLWVLIFAVFLASLGLNTNSTAVIIGAMLISPLMGPIMGFGLGLGITDFDLVKRSLRHYLTATAFSVATSTAFFLISPISEAQSELLARTSPSIYDVLIAFFGGLAGIVASSTKSKGNVIPGVAIATALMPPLCTAGFGLASGNLSYFFGAFYLYFINTVFISVATYIVVRILKYPRKSFIDKKREKTVRRYMTIIVICTIVPSIYLSYRVFEATLFDQQVRKFINEELHFPNTQILSRSVTNTGDKKEIKVVLIGQTIPDIMISTARLKMPNYGLKDIDLIVQQGFGNEEVDINELKTMLMKDLYKNSEDLLEAQAIQIDSLKQSLDRYRHASDMTRTLLPEMRVLYPSIEQLSCTQTYLMETNKSKQDTVMLVYLKARQNIGTDDRKKLVQWLSARTKEKNIKLIIDNK
>NZ_AP013044.1|WP_060827215.1|359755_361906_-|S46-family-peptidase
MKRTNKIWVAALLLLATVGQVFADEGMWVLKELNRQNLARMQELGLTIPVETLYSETNPCIANAVVIFGGGCTGVTVSDQGLVLTNHHCGYGAIQRLSSVEHDYLKNGFVSQNMSEELPVEGLRIQYLKETVDVSERILSQIEGVDDEFKRITKADSIGQAICDSIGKDNSSLSARVIPFYSRNKYYLVVYNVFRDVRLVFAPPSSLGKFGGDTDNWMWPRHTCDFSAFRVYADANNRPAEYSASNRPYQPEYVAEISLRGYDEKDYAMTIGFPGRTNRYLCSWGVQQRIEDSNKPRIEVRGIKQDLWKKAMLASDAVRIKYASKYAGSSNYWKNSIGMNRGLARLNVIDRKKTEEAAFTAWVNQMPARKTQYGDVLHLLEKGYTSSAEYRKYATYLMEAFAGGTEIIRLARIIRSVDVKNSTPEEIDERIDGDLRAFYKDYEPALDRHVLAAMMKIVKERVPASFLPDIYGKVDKKYKGDYEKYAADVFGNTVLTSFEKVSALLKNPKQYEKVMKKDPAAVLSLSATLAVYDIQQQVAAWDNDIDKGERLYWAGLKEMYPDRSFYSDANFTMRMSYGTIGGYRPYDAAWYNFHTTDRGILEKEDPMSSEFRVQPEILNLVKARDFGPYANEQGELQLCFLSNNDITGGNSGSPVFDKHGRVIGLAFDGNWEAMSGDIAFEPDLQRTISVDIRYVLWMIEKWGKCTRLIEELKRVK
>NZ_AP013044.1|WP_014223834.1|358746_359739_-|glycosyltransferase
MFFSIIVPIYNRPDEARELLESLASQTYNDFELVLVEDGSSLPCTAEVEAFRPKLNIHYIVKENTGRSDTRNVGMKHAQGRYLIFFDSDCIIPPDYFETVRKNLHDDYADCFGGPDREHPSFTTTQKAISYAMTSFWTTGGIRGGKTHMEKFKPRTFNMGFSREVYEKVGGFKDMYGEDIDLSIRIQQAGFVTKLYRNAFVYHKRRGNLKKFYKQVHIFGQARINLYKLYPDSLKPVHALPALCVIGSIVVLLSAVFVSPWFLLFPAVYLLLLFADALLKTRSFPIAGLSVAASLIQIFGYGLGFIRSFVDKIIFRHGLEDLETLKRVYK
>NZ_AP013044.1|WP_060827214.1|357522_358608_+|hypothetical-protein
MKKKHVFFLLLSCFAFLQCKNSTESVDEGYVAPVFPETKEITVECLNDSFIFDIGGIDQLDTLLICSGKTDINDYVFHLFSKNSGAYIKSFGTIGQGPCEISWPVMGYSTDRKEDKVYCYDAMQTKMVEYAIRNHNGEIVVEAVECMLPPEAKNTRGNTCFSIGNGQFITAYSSFFGNSYRFIKTASVDTVSTCNEYPRLNEPDEFIAVEHAYFSYMGRLAVKPDGKKFVHATWSGCILEIFDCKETIRPSVTKRFFEPEYKVTKKNVKYPFVRCAENVVNGIWGMACTDARIYAKYRDDSRYKNSGTLIAVFDWEGNPAGMLHFDDGLYDVVIENNDKYGYAIMRDKKDEGIKLVKFKID
>NZ_AP013044.1|WP_060827221.1|370610_371057_+|transposase
MPQSLAKLYIHIIFHIKSTSVPIRKQDAHELYAYIGSIIKSADSIPIMINGMEDHIHILCALSKNISLAKLIEKIKSSSSKWIKGKDNYYHHFAWQGGYGGFSVSPSLHDKTTQYILKQEEHHRRLTFKEEYLLFLKEYNIQYDENYL
>NZ_AP013044.1|WP_060827222.1|371229_374322_+|efflux-RND-transporter-permease-subunit
MIKFLLQRPVAVLMVFLACVIIGIITYATLPVSLLPDIAIPEITVQITDDNMSARELENTAVKPVRRQLMQTGKLRDIRSETRDGSAIIRLKFDYGTHTDLAFIEVNEKIDAAMNNLPRDFRRPRVIKASAADIPVFYLNLTLKDDKPYTVTDEQKFLDLSEFADNVVKRRIEQLSEVAMADMTGLMHRHVQIVPDIDKLKSASINLNDIERTLSANNIEPGSMIVRDGYYEYNIKFSSLLRTPDDVRNIYLRKEERIFQLKDLAKINVVRQAETGLSLINGKRAVTLGIIKQADETMKNLKNSLGETITDLERSYPDVEFTINRNQTELLDYTISNLKENLSLGFLLVFIVALLFLGDAQSPIVIGISMVTALVTSFIFFYLFGQSLNIISLSGLILALGMMIDSSIIVTDIISQYRMQGSSLEEACIRGTNEVITPILSSTFTTIAVFVPLVFMSGIAGAIFFAQAFAVSVGLLVSYFTGIMLLPVLYKIVYGIRFRKLAAGNFFVRVQEGIDRWAFGWYDWGIEWVFRHKTVTFLFLLLSIPFCVLMFRIMPKSTMPHIDHTETMVMVEWNENIHVDENNRRICELMQSADSLTIEHAGYIGHRQYLLDKENDLSPSEARLYFRTAKASDIDELQGHLAEWTKANYPQAVITFSPPENIFEKIFDTSEADVVAQLYPANRDHIPDAAAIRHIEQRLKSATEVEAEGIPFEQQFTVAIDKEKLLLYDVDYNEVYRTLRTAFRENRIATLRSYQQYLPISLAGKQQTVEEVLRETLVQTVPATGRASMFIPLQALVSISRGEDVKTIVAGKNGEYVPINYYDVKDPEALIKKADEAIRSDASWEAVFGGSFFSNQQMLGELVVILLVSMLLMYFILSSQFESFLQPLIVLAEIPIDIGFALVLLWLTGHTLNLMSAIGLIVTSGIIINDSILKLDMMNELRKQGIPLMEAIHTAGVKRLRAIIMTSLTTIFAMVPLLFSFDLGSELQKPLALAMIGTMVIGVLVSLFIIPLVYWAIYRKADHRYHEIKK
>NZ_AP013044.1|WP_172794543.1|374379_375855_+|TolC-family-protein
MTFAVLLCGLCGFRLSAQQPGTVTLNLEETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLPSLSLGMTPMSYRHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGYIQNFGKNEKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQNAEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFIMQQQMIRSAEEAVELAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTIEIDFNAIRK
>NZ_AP013044.1|WP_155642388.1|375855_379044_+|efflux-RND-transporter-permease-subunit
MDNPMSAKKSISAFTVIVAFLSVALMGLALVPLLPVKLAPSHTLPGLTVYFSMPNNSARVIEMTATSKLEAMLARIKGVKNIYSTSGNGWGRVTLELDKHTPIDAARFEASTIVRQTWHDLPREVSYPYISVRRPDENAARPFMTFTVNSAAVPVVIQQYAENNIKPRLNDIAGLYKIEVHGATPMEWQLMYDNDRLQALGVTVNDIREAVSQHYTTDFLGMAETRSADGTAAWMRIMLMSGSRSDTFDATAITVKNCDGALIRLDQLVEVVHTEQEPQSYYRINGLNSIYISLTAEETANQLRLSERVQETMDEIRRLLPPGYEIHSSYDATEYIHAELNKIYLRSGLTVLILLLFVLLITRNVRYLFLITVSLTINLAIAVIFYYILGLEIQLYSLAGITISLSLIIDNTIIMTDHLMHHGNRNVFMPVLAATMTTVGALSIIFFLDEKIRLNLQDFAAVVMVNLCVSLAVALFFVPAMAEKIRLKKRISRTRILRWFPLRPKRLIVWFNRFYGAMIRLLSRRKWIPFTAIVLTFGLPVFLIPDKIEKETKFAEQYNRIFDNATYKEKVKPIVNKVLGGTLRLFVDKVYQGSYFTRNEELILTITASMPNGTTLAQMNALVEKMEHYLSSFSEIRQFQTHIPNPRRASIRVFFTKAAERGGFPYLLKSNVITKALELGGGSWSVYGLQDQGFDNSVREFAGNYGVKFYGYNYDELAAWADTLKNTLLLNRRIKEVTINSDFSWYKDDYREFSFDLKKERLAADGFLPGDLFASLQPIFARDMWAGSLIIEGEREDIKLASHQGKHYDIWALRHVAHRMGRRMYKLDELADISQGQAPQEVAKENQQYRLTLQYDYIGSGTQGRKMLEREVKALSERLPMGYTVEQRDTQWGWGHKDKKQYGLLGLLIIIIFFTSSVLFNSIRQPLAVIFVIPVSFIGVFLTFYWFKLNFDQGGFASFILLSGITVNASIYILNEYNRVRRLRPRLAPIHAYLKAWNAKIIPIFLTVVSTMLGFVPFMAGTEKEAFWFPLAAGTIGGLAMSILGIWIFLPLMTIRGKKAIK
>NZ_AP013044.1|WP_014223848.1|379114_379960_+|GLPGLI-family-protein
MKSIHILILWLFFQPVFPQKTTDQFLFRASYTFSYKTDPLQKDFVETDLIYLDIGNNSSKYYSRYTQVRDSNKIAGLKKGLSAYDVVEDNRRFKKGTKTTIYNMDEPGQFHVIEHLVDYYYYDEKRFLPAWTFGAGEKTIAGYACKEAQAIYLGRKWTVYFAPEIPLNKGPWKLWGLPGLIIYAIDSEQLFQFELQGFETLKDQTPVSIENKTQFGKLYKKTTKKDYQKMEALRYRDFMTFTNLFILEGKGEILLSPEQERENERHREKGGTPYIPLEKQE
>NZ_AP013044.1|WP_081094455.1|380095_382015_+|TonB-dependent-receptor
MTEDGKTILAYSYSQPDGSFILECPQGPQQEFLLTTSRLGYEPYRQKIPAQTQQTEILLKESSLTLREIKVISSPIRRQGDTISYYMSNFHRPQDRNLADVLARMPGIHVQSDGRVQYDGKPINRFYIEDMNLLGERYSLATKNLSPSDIAAVQVYENHEPIKMLRDRSQTEQAALNIKLKDFSSPYTLRQKIHLPRVHLKNNTSILRLLGNVSAGIENESEYTHLPQKLMLSSSDSLPLFRSSHVGQSCRFNEGFSNTHITLNYKKHDQSFGLKCGIAWTGQKIESDLSPWPLVTDTFVNDLTWHTSRFYVEPSYRMNYRSWTISSSASANHLRTNYSGKKATYTYIHPRLRLIFAPSGDFKFNAGYSYTTHYGDLNEMGTGYVLERYNLFSKGIEALQFNASQSINFGVFYKNISHFLQTSYLTIYSLYKDNLIPASFVRDIYTFSWWEQKDRLSSFWLNTLSASKLFMEISLTASINLSYNQSKSVVEQQGSSINYTQHSFGVEPSLKWKAKRNLNFDYTMNAFFSGISMNHRPIDSYIPLINHRLYTYFGATDRLFFTCNLQHFYIKAPYTSTSNLLFTDLGIQYDFQHLTLSLDWSNIFNRKLHVISDYNTINTVTQTDKLRPSEVLISLRFKH
>NZ_AP013044.1|WP_014223850.1|382189_382822_-|trimeric-intracellular-cation-channel-family-protein
MESLQYDASLFSLRDIIEYAGTIVFAISGIRLAAAKEFDWFGAFVVGLVTAIGGGTLRDLLLGVTPFWMLSPSYMYCTLLGMGIVFIFSKQLVRLDTPFFIFDAIGLALFVVIGVEKTLELNYPFWVAITMGTITGIAGGVMRDIFINETPLVFRQEVYALACVMGGIVFALCYTMAYSNEVCELSSSATILLIRILAVKYHWRLPKMKH
>NZ_AP013044.1|WP_041590573.1|383103_386379_+|TonB-dependent-receptor
MMHKQSVLKHGMGMAFGLLLTTGVPSFSSYAENVTVAVTQQSRTVSGTVVDEQGVPLLGVNVSVSGTTTGTITDIDGKFTLEVPAGAQLTFSYIGFISQTLPSSNNLSRVVLKEDTQKLQEVVVVGYGTQQKKDITGSVAVVNADELLKTPSASATQQLQGRAAGVVIGSTGSPGSKSMVRIRGIGTVNDNGPLYVIDGVSTRNQNLNSINPNDIESMQVLKDASSAAIYGAEASNGVILITTKKGLKTAQRPKLTYDAYIGGSTTGKKYDVLNATDRLNVEWAAQANGYKIRNSNDLPSHKQFGTGATPSIPNYLSTKGAEGQQLNPADYSYPANQMVPWDAQGTDWWNELSRTGVIQNHQLSLQGGSNHGSYLFSANYYDQEGTVIHQYFRRYQIRANTSYNVRDWLRVGENLTYAWTKDNGLNEKSNEATPYSWTYRASPWVPVYDIQGHFAGSKIAGTGNFINPVADAIRNKDNYWSNTRIFGNIWGEVDFMKDLTFRTSFGIDYTGNYSYSMSKKDLEFSESPGANGLTEEAGFNFRWVWTNTLTFNRTFNEVHKLNLLVGTEAVRDGLGRKMLGYRRNYLYEDDVRTWTLDMGEYNNFRRAESDYKGEYASFGIFGRANYSFADKYLLTATVRRDGVSRFSKSNRYGTFPSVSAAWRLSSEEFMKDFEWLDDLKLRVGYGQAGNSTFPRATNFISTYSTNPSRTNYDFTGRQTSSQLGYRMGTFGNPDTKWERVETTNIGLDATFLEGKFSTNIEWWYKKSTDMLVEAVYSNLAGGADKPYINIGDMKNTGVDFMINYQDRNGDLSWNVNLNVSTYKNEVLKIGVSDKAAKYGYSDRISGPVSRTMKGRPIGEFYGYQIDGFYESEEEVKALTPLGETAGKFDPKTYIGKFKYRDVDGDGKITTNDRDVLGSPHPDFTAGLNVGLGYKGFDFSMFWYACVGNEIFNGAKYFTDFWMFNGNRSSRMRDLSWEPGKKNAILPILDKQDNKSGTNANSYYVEDGTYARMKHITLGYTLPKNWLRKATIENLRFYVQAENLLTITGYKGIDPEVTNRDKTASGGDLEKGIDVGGIPNSIKFIFGVNLVF
>NZ_AP013044.1|WP_060827224.1|386411_388172_+|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKRIIYTITLTAAVLGMTSCGENFLYKDPQGSFSGDMLENAQGVELLTTNAYANLTENGWGATPFNWVFGSIIGGDANKGSSAGDQSVINEIETYAPLTTNDYVRQKWEWTYKGVQRCNIALRALKKAKDIAADVAKSREGELFFLRSLYYFEGVKLMGPASLAWIPWDNEEDDPKVYNGTDIYPNIMAEIDQAISLLPEKQSEVGRVNVWAAKALKAKMLMQQGKMAEAKPVLADLLANGQTSNGLKYGLEDDLNNNFNAFKDNGKESIFAVQHSLDANNNGLPGYSLNFPHNVNKNAPGGCCGFFQPSYDLVNSYQVDADGLPYLDYSYRSKPSVSVFDGSAPAGSQFKNDFTIAVDPRLDFAVGRQGVPYKDWDICFKDGYGIRDKGNGGIFLPKKHVWTKAEEEAGLASRSRYAGWAPAVALNMQYLSVRDMILLYAECLANDGELSAAMEQVNKIRTRAGNAANIIQFPDGKGQKYVVKTYPSTHAAFTDKNTCITAIRFERKLELAMEGQRWYDYARWGKEVMKKETSAYVMYEKQYLSKFASASTTFDKVYFFVPDAQIKDKGVDENGKPYLVQNDLWK
>NZ_AP013044.1|WP_060827225.1|388376_388826_-|GatB/YqeY-domain-containing-protein
MSIFDQVSNDIKAAMLAKDKVKLEALRNAKKYFLEAKTAPGADDLLTDEAALKILQKLVKQGRESARIYTEQHRADLAEAELEQVKALEGYLPSQLSPEALEEEVKKIIAQVGATSLKEMGKVMGAASKALSGKAEGGAISEVVKRLLA

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Crispr_ID: NZ_AP013044_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP013044_2

2465832-2470082

TypeIII-A

I-A,II-B,III-A

Consensus_repeat	Method
CTTTTAATCGTACTATCGTAGAATTGAAAC	PILER-CR
CTTTTAATCGTACTATCGTAGAATTGAAAC	CRISPRCasFinder
CTTTTAATCGTACTATCGTAGAATTGAAAC	CRT
TTTTAATCGGACTATCATAGAATTGAAAC	PILER-CR

64 spacers

cas2,cas1,csx20,csx1,csm5gr7

The CRISPR arrays of NZ_AP013044_2

>merge|NZ_AP013044|2|2465832-2470082|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
CTTTTAATCGTACTATCGTAGAATTGAAACGTTACATCAATATCCACATAACAGTATTTGCTTCTTTCTTTTAATCGTACTATCGTAGAATTGAAACTGTCGTGTCCGCCATTACCGCGCGGGCGGCGATGCTTTTAATCGTACTATCGTAGAATTGAAACCTTTCGATACAAACTTGCTATGTATATCCGAAAACTCCTTTTAATCGTACTATCGTAGAATTGAAACCTTTTTAACTCAGAGATGTAGCCCGCATTTTTCAACTTTTAATCGTACTATCGTAGAATTGAAACTAATGTAAGACTTGATGGTCGGAAATTTCTTACCAAAACTTTTAATCGTACTATCGTAGAATTGAAACTTACTCCCGCTGTGGCTATGATGGATATTGTCGGGACTTTTAATCGTACTATCGTAGAATTGAAACGTTGTTCCCATCGTGGTAGTTCCACGCAGACACTTCTTTTAATCGTACTATCGTAGAATTGAAACCGACACGTTCGGTCCTTACGGGGAAGTAGACTATACGCTTTTAATCGTACTATCGTAGAATTGAAACTCATGGACGTGAAGGGGCAAAAGATCAGCATTGCCCACTTTTAATCGTACTATCGTAGAATTGAAACTTGAATGGTGAGCATTCGATGTCTTTGCAAATCCCTCTTTTAATCGTACTATCGTAGAATTGAAACTTGTTGGCATTTAACCAACTTATCGATTCTCTTGTAACTTTTAATCGTACTATCGTAGAATTGAAACTCTCTCGTGTAATTGTAACACACAACGGAATCATACCCACTTTTAATCGTACTATCGTAGAATTGAAACCTATAACCTCCGCCCGCACGGGCGCACGGCTGGCGTACTTTTAATCGTACTATCGTAGAATTGAAACATCATCTTGCTTCAGCTTCCACAAGTCGAGATGTCTCTTTTAATCGTACTATCGTAGAATTGAAACGCGAAAGTGTTCGCGTTCGTGTCAGACGATGCGAAACTTTTAATCGTACTATCGTAGAATTGAAACAGGCTGTCTTTAACGTGCATGCACGGGTCACCACCCTTTTAATCGTACTATCGTAGAATTGAAACACCCGACGAACGAGAAGATACTCTCCTTGTCGTGTCCTTTTAATCGTACTATCGTAGAATTGAAACCATCTTTATATAGAGTTCGAAGGCCGGAGTTATGGCCTTTTAATCGTACTATCGTAGAATTGAAACAAGCTAAAAATCGGGTACAGAGATAAGTGGATGGATGCTTTTAATCGTACTATCGTAGAATTGAAACTTGTCTACGATACTGCCGATGATTGTGTCGTCGGACTTTTAATCGTACTATCGTAGAATTGAAACGAGTTATGGCTACCTCCTCGCCAGTGTCGGGGTCGGTCTTTTAATCGTACTATCGTAGAATTGAAACGCACCTTCTGGGCGAACTTTGAACTTCTTTTCCGGACTTTTAATCGTACTATCGTAGAATTGAAACCAAACTTGCCCGCGATTGCGGCTACAGTCGCAGGAACTTTTAATCGTACTATCGTAGAATTGAAACAGTCTTTTAATGTCAAATCTGTTCATATCTGTTATTTTCTTTTAATCGTACTATCGTAGAATTGAAACCGCAATCGGATAACACCCTTTTTAGTTCTACTACTTCCTTTTAATCGTACTATCGTAGAATTGAAACTTGCTTTATCATAATCCCCCCACCCGGATTCCGGACTTTTAATCGTACTATCGTAGAATTGAAACGATTTCATCAAAATTCGCGTCGCTTTGTTTTGTGTCGCTTTTAATCGTACTATCGTAGAATTGAAACAAATGGAGATACAGTGTTTGAAGAATCTAACCGGTCTTTTAATCGTACTATCGTAGAATTGAAACTCCGGCCAACAGCGCGGAGCTCTCTCTCGCAAACTTATCCTTTTAATCGTACTATCGTAGAATTGAAACTCTTAATGTATAAAGAGCGAGAGGCGTATGCCCCTCTCTTTTAATCGTACTATCGTAGAATTGAAACTTGCAAAATAAGGAGGTGGAGGGAAGAGGAGTTCTTCCTTTTAATCGTACTATCGTAGAATTGAAACTGCTTTTGTGGCTATTCCGGTCGCGCGGATGGCTTGCTTTTAATCGTACTATCGTAGAATTGAAACGATTTTGATCCATTATTTTATGCGCCATCTCGACCCTTTTAATCGTACTATCGTAGAATTGAAACTGCTAAAGCATTGATTTATTATTTTTTTGTATATTGACTTTTAATCGTACTATCGTAGAATTGAAACTATAGAGAAAGCCGTTGAAACAGTACGCAAGAGACTTTTAATCGTACTATCGTAGAATTGAAACAACAAAAATCTCCTACAACAGTTGAAGTATTTGACTTTTAATCGTACTATCGTAGAATTGAAACCACATATTAGTTCCAAATAGTTGTCCTCCTAAATTCTTTTAATCGTACTATCGTAGAATTGAAACTATAATGGGTTATTTCAGGATCAGTAACATCATATTCTTTTAATCGTACTATCGTAGAATTGAAACTTTATTACAAACCATATCTCCACGCACTCCCTACCGAACTTTTAATCGTACTATCGTAGAATTGAAACAAAAAATGCATCTTCGGTCTTATGCCCTGTTAGCACTTTTAATCGTACTATCGTAGAATTGAAACTCGGGACAGTCGTCTGCGTACTCCCCCTCGAGGACGTCTTTTAATCGTACTATCGTAGAATTGAAACTAATGCTGTACCACGACACGTTCGGCCGTTACGGGGAACTTTTAATCGTACTATCGTAGAATTGAAACACTCGATGCGCTTACGGCGACGGTTTTACGCTGTGCTTTTAATCGTACTATCGTAGAATTGAAACGAAAGTCTACATAAGCGCCCTCCGGAATTTCGACGCTTTTAATCGTACTATCGTAGAATTGAAACGCAGATCCGCACTTCGCCGCGCCGAAGACGCGCGAACTTTTAATCGTACTATCGTAGAATTGAAACAGCAAAATATAATATATGATAATCAATTTCTTTTCTTTTAATCGTACTATCGTAGAATTGAAACAACCATTTTGCTACAGATTGATTGTTTGACGTAGCTTTTAATCGTACTATCGTAGAATTGAAACGCGACCCGTCCAAGCTTTTCCTTATCTAGACAGAACTTTTAATCGTACTATCGTAGAATTGAAACGGGGAATGGGAATGGATAGAAAAAGGAGACATACGGCTTTTAATCGTACTATCGTAGAATTGAAACATGGCTGACATCATAGGGCGAAAGCAAACGGCGTCCCTTTTAATCGTACTATCGTAGAATTGAAACTACAAATTCAAATGGCTGAACAATATCCTGATTGACTTTTAATCGTACTATCGTAGAATTGAAACTTGTGTGTTACGGTTACACAAGGAATGATGAAATTTTCTTTTAATCGTACTATCGTAGAATTGAAACGAGATAGCGGTCGTCTCCCGATCCTTTTCGCTGCCCTTTTAATCGTACTATCGTAGAATTGAAACTACTTTCCCGCTTTAAATCGGTGAAAAAACAGCATCCTTTTAATCGTACTATCGTAGAATTGAAACGCTGCTCGGCAGGCGATGCCTGCGGCGCTTCTTCTTTCTTTTAATCGCACTATCGTAGAATTGAAACACGTAGTGCCGATGGGTTCCACTTTCGTTCCTTCCCTTTTAATCGCACTATCGTAGAATTGAAACGGACGATGAAGAAGGCATTTATTTTAATGATCGACTTTTAATCGCACTATCGTAGAATTGAAACTGAGCCCATTTCCCGTTTCCGTCTGTCACGAGATACTTTTAATCGGACTATCATAGAATTGAAACTACACTGCCGGCTTCACCCCCGTAAAGGGGGTGTCTTTTAATCGGACTATCATAGAATTGAAACCGTCAATACATCGAGCTCCCTGATGGGCGGTTTACTTTTAATCGGACTATCATAGAATTGAAACTCGGCAGGCGCAGGCAGGCCGTCATCGAACAGGGTATTTTTAATCGGACTATCATAGAATTGAAACTGTTTCAAAGAAAAAGGTGGTGAAGCTAAAGTCATCTTTTTAATCGGACTATCATAGAATTGAAACTTTTATTTAAGTATTTAGTTAGACAATAAGTTATTCTTTTAATCGGACTATCATAGAATTGAAACGCCCCTTACAATTCCTTACCCATTCCATTTTTCACTCTTTTAATCGCACTGTCGTAGAATTGAAAT

>NZ_AP013044|2|2|2465832-2469562|PILER-CR
CTTTTAATCGTACTATCGTAGAATTGAAAC	GTTACATCAATATCCACATAACAGTATTTGCTTCTTT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TGTCGTGTCCGCCATTACCGCGCGGGCGGCGATG
CTTTTAATCGTACTATCGTAGAATTGAAAC	CTTTCGATACAAACTTGCTATGTATATCCGAAAACTC
CTTTTAATCGTACTATCGTAGAATTGAAAC	CTTTTTAACTCAGAGATGTAGCCCGCATTTTTCAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TAATGTAAGACTTGATGGTCGGAAATTTCTTACCAAAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTACTCCCGCTGTGGCTATGATGGATATTGTCGGGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	GTTGTTCCCATCGTGGTAGTTCCACGCAGACACTT
CTTTTAATCGTACTATCGTAGAATTGAAAC	CGACACGTTCGGTCCTTACGGGGAAGTAGACTATACG
CTTTTAATCGTACTATCGTAGAATTGAAAC	TCATGGACGTGAAGGGGCAAAAGATCAGCATTGCCCA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGAATGGTGAGCATTCGATGTCTTTGCAAATCCCT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGTTGGCATTTAACCAACTTATCGATTCTCTTGTAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TCTCTCGTGTAATTGTAACACACAACGGAATCATACCCA
CTTTTAATCGTACTATCGTAGAATTGAAAC	CTATAACCTCCGCCCGCACGGGCGCACGGCTGGCGTA
CTTTTAATCGTACTATCGTAGAATTGAAAC	ATCATCTTGCTTCAGCTTCCACAAGTCGAGATGTCT
CTTTTAATCGTACTATCGTAGAATTGAAAC	GCGAAAGTGTTCGCGTTCGTGTCAGACGATGCGAAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	AGGCTGTCTTTAACGTGCATGCACGGGTCACCACC
CTTTTAATCGTACTATCGTAGAATTGAAAC	ACCCGACGAACGAGAAGATACTCTCCTTGTCGTGTC
CTTTTAATCGTACTATCGTAGAATTGAAAC	CATCTTTATATAGAGTTCGAAGGCCGGAGTTATGGC
CTTTTAATCGTACTATCGTAGAATTGAAAC	AAGCTAAAAATCGGGTACAGAGATAAGTGGATGGATG
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGTCTACGATACTGCCGATGATTGTGTCGTCGGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	GAGTTATGGCTACCTCCTCGCCAGTGTCGGGGTCGGT
CTTTTAATCGTACTATCGTAGAATTGAAAC	GCACCTTCTGGGCGAACTTTGAACTTCTTTTCCGGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	CAAACTTGCCCGCGATTGCGGCTACAGTCGCAGGAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	AGTCTTTTAATGTCAAATCTGTTCATATCTGTTATTTT
CTTTTAATCGTACTATCGTAGAATTGAAAC	CGCAATCGGATAACACCCTTTTTAGTTCTACTACTTC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGCTTTATCATAATCCCCCCACCCGGATTCCGGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	GATTTCATCAAAATTCGCGTCGCTTTGTTTTGTGTCG
CTTTTAATCGTACTATCGTAGAATTGAAAC	AAATGGAGATACAGTGTTTGAAGAATCTAACCGGT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TCCGGCCAACAGCGCGGAGCTCTCTCTCGCAAACTTATC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TCTTAATGTATAAAGAGCGAGAGGCGTATGCCCCTCT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGCAAAATAAGGAGGTGGAGGGAAGAGGAGTTCTTC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TGCTTTTGTGGCTATTCCGGTCGCGCGGATGGCTTG
CTTTTAATCGTACTATCGTAGAATTGAAAC	GATTTTGATCCATTATTTTATGCGCCATCTCGACC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TGCTAAAGCATTGATTTATTATTTTTTTGTATATTGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TATAGAGAAAGCCGTTGAAACAGTACGCAAGAGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	AACAAAAATCTCCTACAACAGTTGAAGTATTTGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	CACATATTAGTTCCAAATAGTTGTCCTCCTAAATT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TATAATGGGTTATTTCAGGATCAGTAACATCATATT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTTATTACAAACCATATCTCCACGCACTCCCTACCGAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	AAAAAATGCATCTTCGGTCTTATGCCCTGTTAGCA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TCGGGACAGTCGTCTGCGTACTCCCCCTCGAGGACGT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TAATGCTGTACCACGACACGTTCGGCCGTTACGGGGAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	ACTCGATGCGCTTACGGCGACGGTTTTACGCTGTG
CTTTTAATCGTACTATCGTAGAATTGAAAC	GAAAGTCTACATAAGCGCCCTCCGGAATTTCGACG
CTTTTAATCGTACTATCGTAGAATTGAAAC	GCAGATCCGCACTTCGCCGCGCCGAAGACGCGCGAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	AGCAAAATATAATATATGATAATCAATTTCTTTT
CTTTTAATCGTACTATCGTAGAATTGAAAC	AACCATTTTGCTACAGATTGATTGTTTGACGTAG
CTTTTAATCGTACTATCGTAGAATTGAAAC	GCGACCCGTCCAAGCTTTTCCTTATCTAGACAGAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	GGGGAATGGGAATGGATAGAAAAAGGAGACATACGG
CTTTTAATCGTACTATCGTAGAATTGAAAC	ATGGCTGACATCATAGGGCGAAAGCAAACGGCGTCC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TACAAATTCAAATGGCTGAACAATATCCTGATTGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGTGTGTTACGGTTACACAAGGAATGATGAAATTTT
CTTTTAATCGTACTATCGTAGAATTGAAAC	GAGATAGCGGTCGTCTCCCGATCCTTTTCGCTGCC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TACTTTCCCGCTTTAAATCGGTGAAAAAACAGCATC
CTTTTAATCGTACTATCGTAGAATTGAAAC	GCTGCTCGGCAGGCGATGCCTGCGGCGCTTCTTCTTT
CTTTTAATCGCACTATCGTAGAATTGAAAC	ACGTAGTGCCGATGGGTTCCACTTTCGTTCCTTCC
CTTTTAATCGCACTATCGTAGAATTGAAACGGACGATGAAGAAGGCATTTATTTTAATGATCGACTTTTAATCGCACTATCGTAGAATTGAAACTGAGCCCATTTCCCGTTTCCGTCTGTCACGAGATACTTTTAATCGGACTATCATAGAATTGAAAC	TACACTGCCGGCTTCACCCCCGTAAAGGGGGTGTC
TTTTAATCGGACTATCATAGAATTGAAAC	CGTCAATACATCGAGCTCCCTGATGGGCGGTTTAC
TTTTAATCGGACTATCATAGAATTGAAAC	TCGGCAGGCGCAGGCAGGCCGTCATCGAACAGGGTAT
TTTTAATCGGACTATCATAGAATTGAAAC	TGTTTCAAAGAAAAAGGTGGTGAAGCTAAAGTCATCT
TTTTAATCGGACTATCATAGAATTGAAAC	TTTTATTTAAGTATTTAGTTAGACAATAAGTTATTC


>NZ_AP013044|2|1|2465832-2470082|CRISPRCasFinder
CTTTTAATCGTACTATCGTAGAATTGAAAC	GTTACATCAATATCCACATAACAGTATTTGCTTCTTT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TGTCGTGTCCGCCATTACCGCGCGGGCGGCGATG
CTTTTAATCGTACTATCGTAGAATTGAAAC	CTTTCGATACAAACTTGCTATGTATATCCGAAAACTC
CTTTTAATCGTACTATCGTAGAATTGAAAC	CTTTTTAACTCAGAGATGTAGCCCGCATTTTTCAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TAATGTAAGACTTGATGGTCGGAAATTTCTTACCAAAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTACTCCCGCTGTGGCTATGATGGATATTGTCGGGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	GTTGTTCCCATCGTGGTAGTTCCACGCAGACACTT
CTTTTAATCGTACTATCGTAGAATTGAAAC	CGACACGTTCGGTCCTTACGGGGAAGTAGACTATACG
CTTTTAATCGTACTATCGTAGAATTGAAAC	TCATGGACGTGAAGGGGCAAAAGATCAGCATTGCCCA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGAATGGTGAGCATTCGATGTCTTTGCAAATCCCT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGTTGGCATTTAACCAACTTATCGATTCTCTTGTAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TCTCTCGTGTAATTGTAACACACAACGGAATCATACCCA
CTTTTAATCGTACTATCGTAGAATTGAAAC	CTATAACCTCCGCCCGCACGGGCGCACGGCTGGCGTA
CTTTTAATCGTACTATCGTAGAATTGAAAC	ATCATCTTGCTTCAGCTTCCACAAGTCGAGATGTCT
CTTTTAATCGTACTATCGTAGAATTGAAAC	GCGAAAGTGTTCGCGTTCGTGTCAGACGATGCGAAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	AGGCTGTCTTTAACGTGCATGCACGGGTCACCACC
CTTTTAATCGTACTATCGTAGAATTGAAAC	ACCCGACGAACGAGAAGATACTCTCCTTGTCGTGTC
CTTTTAATCGTACTATCGTAGAATTGAAAC	CATCTTTATATAGAGTTCGAAGGCCGGAGTTATGGC
CTTTTAATCGTACTATCGTAGAATTGAAAC	AAGCTAAAAATCGGGTACAGAGATAAGTGGATGGATG
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGTCTACGATACTGCCGATGATTGTGTCGTCGGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	GAGTTATGGCTACCTCCTCGCCAGTGTCGGGGTCGGT
CTTTTAATCGTACTATCGTAGAATTGAAAC	GCACCTTCTGGGCGAACTTTGAACTTCTTTTCCGGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	CAAACTTGCCCGCGATTGCGGCTACAGTCGCAGGAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	AGTCTTTTAATGTCAAATCTGTTCATATCTGTTATTTT
CTTTTAATCGTACTATCGTAGAATTGAAAC	CGCAATCGGATAACACCCTTTTTAGTTCTACTACTTC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGCTTTATCATAATCCCCCCACCCGGATTCCGGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	GATTTCATCAAAATTCGCGTCGCTTTGTTTTGTGTCG
CTTTTAATCGTACTATCGTAGAATTGAAAC	AAATGGAGATACAGTGTTTGAAGAATCTAACCGGT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TCCGGCCAACAGCGCGGAGCTCTCTCTCGCAAACTTATC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TCTTAATGTATAAAGAGCGAGAGGCGTATGCCCCTCT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGCAAAATAAGGAGGTGGAGGGAAGAGGAGTTCTTC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TGCTTTTGTGGCTATTCCGGTCGCGCGGATGGCTTG
CTTTTAATCGTACTATCGTAGAATTGAAAC	GATTTTGATCCATTATTTTATGCGCCATCTCGACC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TGCTAAAGCATTGATTTATTATTTTTTTGTATATTGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TATAGAGAAAGCCGTTGAAACAGTACGCAAGAGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	AACAAAAATCTCCTACAACAGTTGAAGTATTTGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	CACATATTAGTTCCAAATAGTTGTCCTCCTAAATT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TATAATGGGTTATTTCAGGATCAGTAACATCATATT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTTATTACAAACCATATCTCCACGCACTCCCTACCGAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	AAAAAATGCATCTTCGGTCTTATGCCCTGTTAGCA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TCGGGACAGTCGTCTGCGTACTCCCCCTCGAGGACGT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TAATGCTGTACCACGACACGTTCGGCCGTTACGGGGAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	ACTCGATGCGCTTACGGCGACGGTTTTACGCTGTG
CTTTTAATCGTACTATCGTAGAATTGAAAC	GAAAGTCTACATAAGCGCCCTCCGGAATTTCGACG
CTTTTAATCGTACTATCGTAGAATTGAAAC	GCAGATCCGCACTTCGCCGCGCCGAAGACGCGCGAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	AGCAAAATATAATATATGATAATCAATTTCTTTT
CTTTTAATCGTACTATCGTAGAATTGAAAC	AACCATTTTGCTACAGATTGATTGTTTGACGTAG
CTTTTAATCGTACTATCGTAGAATTGAAAC	GCGACCCGTCCAAGCTTTTCCTTATCTAGACAGAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	GGGGAATGGGAATGGATAGAAAAAGGAGACATACGG
CTTTTAATCGTACTATCGTAGAATTGAAAC	ATGGCTGACATCATAGGGCGAAAGCAAACGGCGTCC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TACAAATTCAAATGGCTGAACAATATCCTGATTGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGTGTGTTACGGTTACACAAGGAATGATGAAATTTT
CTTTTAATCGTACTATCGTAGAATTGAAAC	GAGATAGCGGTCGTCTCCCGATCCTTTTCGCTGCC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TACTTTCCCGCTTTAAATCGGTGAAAAAACAGCATC
CTTTTAATCGTACTATCGTAGAATTGAAAC	GCTGCTCGGCAGGCGATGCCTGCGGCGCTTCTTCTTT
CTTTTAATCGCACTATCGTAGAATTGAAAC	ACGTAGTGCCGATGGGTTCCACTTTCGTTCCTTCC
CTTTTAATCGCACTATCGTAGAATTGAAAC	GGACGATGAAGAAGGCATTTATTTTAATGATCGA
CTTTTAATCGCACTATCGTAGAATTGAAAC	TGAGCCCATTTCCCGTTTCCGTCTGTCACGAGATA
CTTTTAATCGGACTATCATAGAATTGAAAC	TACACTGCCGGCTTCACCCCCGTAAAGGGGGTGT
CTTTTAATCGGACTATCATAGAATTGAAAC	CGTCAATACATCGAGCTCCCTGATGGGCGGTTTA
CTTTTAATCGGACTATCATAGAATTGAAAC	TCGGCAGGCGCAGGCAGGCCGTCATCGAACAGGGTA
TTTTTAATCGGACTATCATAGAATTGAAAC	TGTTTCAAAGAAAAAGGTGGTGAAGCTAAAGTCATC
TTTTTAATCGGACTATCATAGAATTGAAAC	TTTTATTTAAGTATTTAGTTAGACAATAAGTTATT
CTTTTAATCGGACTATCATAGAATTGAAAC	GCCCCTTACAATTCCTTACCCATTCCATTTTTCACT
CTTTTAATCGCACTGTCGTAGAATTGAAAT

>NZ_AP013044|2|1|2465832-2470082|CRT
CTTTTAATCGTACTATCGTAGAATTGAAAC	GTTACATCAATATCCACATAACAGTATTTGCTTCTTT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TGTCGTGTCCGCCATTACCGCGCGGGCGGCGATG
CTTTTAATCGTACTATCGTAGAATTGAAAC	CTTTCGATACAAACTTGCTATGTATATCCGAAAACTC
CTTTTAATCGTACTATCGTAGAATTGAAAC	CTTTTTAACTCAGAGATGTAGCCCGCATTTTTCAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TAATGTAAGACTTGATGGTCGGAAATTTCTTACCAAAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTACTCCCGCTGTGGCTATGATGGATATTGTCGGGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	GTTGTTCCCATCGTGGTAGTTCCACGCAGACACTT
CTTTTAATCGTACTATCGTAGAATTGAAAC	CGACACGTTCGGTCCTTACGGGGAAGTAGACTATACG
CTTTTAATCGTACTATCGTAGAATTGAAAC	TCATGGACGTGAAGGGGCAAAAGATCAGCATTGCCCA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGAATGGTGAGCATTCGATGTCTTTGCAAATCCCT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGTTGGCATTTAACCAACTTATCGATTCTCTTGTAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TCTCTCGTGTAATTGTAACACACAACGGAATCATACCCA
CTTTTAATCGTACTATCGTAGAATTGAAAC	CTATAACCTCCGCCCGCACGGGCGCACGGCTGGCGTA
CTTTTAATCGTACTATCGTAGAATTGAAAC	ATCATCTTGCTTCAGCTTCCACAAGTCGAGATGTCT
CTTTTAATCGTACTATCGTAGAATTGAAAC	GCGAAAGTGTTCGCGTTCGTGTCAGACGATGCGAAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	AGGCTGTCTTTAACGTGCATGCACGGGTCACCACC
CTTTTAATCGTACTATCGTAGAATTGAAAC	ACCCGACGAACGAGAAGATACTCTCCTTGTCGTGTC
CTTTTAATCGTACTATCGTAGAATTGAAAC	CATCTTTATATAGAGTTCGAAGGCCGGAGTTATGGC
CTTTTAATCGTACTATCGTAGAATTGAAAC	AAGCTAAAAATCGGGTACAGAGATAAGTGGATGGATG
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGTCTACGATACTGCCGATGATTGTGTCGTCGGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	GAGTTATGGCTACCTCCTCGCCAGTGTCGGGGTCGGT
CTTTTAATCGTACTATCGTAGAATTGAAAC	GCACCTTCTGGGCGAACTTTGAACTTCTTTTCCGGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	CAAACTTGCCCGCGATTGCGGCTACAGTCGCAGGAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	AGTCTTTTAATGTCAAATCTGTTCATATCTGTTATTTT
CTTTTAATCGTACTATCGTAGAATTGAAAC	CGCAATCGGATAACACCCTTTTTAGTTCTACTACTTC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGCTTTATCATAATCCCCCCACCCGGATTCCGGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	GATTTCATCAAAATTCGCGTCGCTTTGTTTTGTGTCG
CTTTTAATCGTACTATCGTAGAATTGAAAC	AAATGGAGATACAGTGTTTGAAGAATCTAACCGGT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TCCGGCCAACAGCGCGGAGCTCTCTCTCGCAAACTTATC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TCTTAATGTATAAAGAGCGAGAGGCGTATGCCCCTCT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGCAAAATAAGGAGGTGGAGGGAAGAGGAGTTCTTC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TGCTTTTGTGGCTATTCCGGTCGCGCGGATGGCTTG
CTTTTAATCGTACTATCGTAGAATTGAAAC	GATTTTGATCCATTATTTTATGCGCCATCTCGACC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TGCTAAAGCATTGATTTATTATTTTTTTGTATATTGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TATAGAGAAAGCCGTTGAAACAGTACGCAAGAGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	AACAAAAATCTCCTACAACAGTTGAAGTATTTGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	CACATATTAGTTCCAAATAGTTGTCCTCCTAAATT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TATAATGGGTTATTTCAGGATCAGTAACATCATATT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTTATTACAAACCATATCTCCACGCACTCCCTACCGAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	AAAAAATGCATCTTCGGTCTTATGCCCTGTTAGCA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TCGGGACAGTCGTCTGCGTACTCCCCCTCGAGGACGT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TAATGCTGTACCACGACACGTTCGGCCGTTACGGGGAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	ACTCGATGCGCTTACGGCGACGGTTTTACGCTGTG
CTTTTAATCGTACTATCGTAGAATTGAAAC	GAAAGTCTACATAAGCGCCCTCCGGAATTTCGACG
CTTTTAATCGTACTATCGTAGAATTGAAAC	GCAGATCCGCACTTCGCCGCGCCGAAGACGCGCGAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	AGCAAAATATAATATATGATAATCAATTTCTTTT
CTTTTAATCGTACTATCGTAGAATTGAAAC	AACCATTTTGCTACAGATTGATTGTTTGACGTAG
CTTTTAATCGTACTATCGTAGAATTGAAAC	GCGACCCGTCCAAGCTTTTCCTTATCTAGACAGAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	GGGGAATGGGAATGGATAGAAAAAGGAGACATACGG
CTTTTAATCGTACTATCGTAGAATTGAAAC	ATGGCTGACATCATAGGGCGAAAGCAAACGGCGTCC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TACAAATTCAAATGGCTGAACAATATCCTGATTGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGTGTGTTACGGTTACACAAGGAATGATGAAATTTT
CTTTTAATCGTACTATCGTAGAATTGAAAC	GAGATAGCGGTCGTCTCCCGATCCTTTTCGCTGCC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TACTTTCCCGCTTTAAATCGGTGAAAAAACAGCATC
CTTTTAATCGTACTATCGTAGAATTGAAAC	GCTGCTCGGCAGGCGATGCCTGCGGCGCTTCTTCTTT
CTTTTAATCGCACTATCGTAGAATTGAAAC	ACGTAGTGCCGATGGGTTCCACTTTCGTTCCTTCC
CTTTTAATCGCACTATCGTAGAATTGAAAC	GGACGATGAAGAAGGCATTTATTTTAATGATCGA
CTTTTAATCGCACTATCGTAGAATTGAAAC	TGAGCCCATTTCCCGTTTCCGTCTGTCACGAGATA
CTTTTAATCGGACTATCATAGAATTGAAAC	TACACTGCCGGCTTCACCCCCGTAAAGGGGGTGT
CTTTTAATCGGACTATCATAGAATTGAAAC	CGTCAATACATCGAGCTCCCTGATGGGCGGTTTA
CTTTTAATCGGACTATCATAGAATTGAAAC	TCGGCAGGCGCAGGCAGGCCGTCATCGAACAGGGTA
TTTTTAATCGGACTATCATAGAATTGAAAC	TGTTTCAAAGAAAAAGGTGGTGAAGCTAAAGTCATC
TTTTTAATCGGACTATCATAGAATTGAAAC	TTTTATTTAAGTATTTAGTTAGACAATAAGTTATT
CTTTTAATCGGACTATCATAGAATTGAAAC	GCCCCTTACAATTCCTTACCCATTCCATTTTTCACT
CTTTTAATCGCACTGTCGTAGAATTGAAAT

>NZ_AP013044|2|3|2469663-2470016|PILER-CR
	GTTACATCAATATCCACATAACAGTATTTGCTTCTTT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TGTCGTGTCCGCCATTACCGCGCGGGCGGCGATG
CTTTTAATCGTACTATCGTAGAATTGAAAC	CTTTCGATACAAACTTGCTATGTATATCCGAAAACTC
CTTTTAATCGTACTATCGTAGAATTGAAAC	CTTTTTAACTCAGAGATGTAGCCCGCATTTTTCAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TAATGTAAGACTTGATGGTCGGAAATTTCTTACCAAAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTACTCCCGCTGTGGCTATGATGGATATTGTCGGGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	GTTGTTCCCATCGTGGTAGTTCCACGCAGACACTT
CTTTTAATCGTACTATCGTAGAATTGAAAC	CGACACGTTCGGTCCTTACGGGGAAGTAGACTATACG
CTTTTAATCGTACTATCGTAGAATTGAAAC	TCATGGACGTGAAGGGGCAAAAGATCAGCATTGCCCA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGAATGGTGAGCATTCGATGTCTTTGCAAATCCCT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGTTGGCATTTAACCAACTTATCGATTCTCTTGTAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TCTCTCGTGTAATTGTAACACACAACGGAATCATACCCA
CTTTTAATCGTACTATCGTAGAATTGAAAC	CTATAACCTCCGCCCGCACGGGCGCACGGCTGGCGTA
CTTTTAATCGTACTATCGTAGAATTGAAAC	ATCATCTTGCTTCAGCTTCCACAAGTCGAGATGTCT
CTTTTAATCGTACTATCGTAGAATTGAAAC	GCGAAAGTGTTCGCGTTCGTGTCAGACGATGCGAAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	AGGCTGTCTTTAACGTGCATGCACGGGTCACCACC
CTTTTAATCGTACTATCGTAGAATTGAAAC	ACCCGACGAACGAGAAGATACTCTCCTTGTCGTGTC
CTTTTAATCGTACTATCGTAGAATTGAAAC	CATCTTTATATAGAGTTCGAAGGCCGGAGTTATGGC
CTTTTAATCGTACTATCGTAGAATTGAAAC	AAGCTAAAAATCGGGTACAGAGATAAGTGGATGGATG
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGTCTACGATACTGCCGATGATTGTGTCGTCGGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	GAGTTATGGCTACCTCCTCGCCAGTGTCGGGGTCGGT
CTTTTAATCGTACTATCGTAGAATTGAAAC	GCACCTTCTGGGCGAACTTTGAACTTCTTTTCCGGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	CAAACTTGCCCGCGATTGCGGCTACAGTCGCAGGAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	AGTCTTTTAATGTCAAATCTGTTCATATCTGTTATTTT
CTTTTAATCGTACTATCGTAGAATTGAAAC	CGCAATCGGATAACACCCTTTTTAGTTCTACTACTTC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGCTTTATCATAATCCCCCCACCCGGATTCCGGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	GATTTCATCAAAATTCGCGTCGCTTTGTTTTGTGTCG
CTTTTAATCGTACTATCGTAGAATTGAAAC	AAATGGAGATACAGTGTTTGAAGAATCTAACCGGT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TCCGGCCAACAGCGCGGAGCTCTCTCTCGCAAACTTATC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TCTTAATGTATAAAGAGCGAGAGGCGTATGCCCCTCT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGCAAAATAAGGAGGTGGAGGGAAGAGGAGTTCTTC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TGCTTTTGTGGCTATTCCGGTCGCGCGGATGGCTTG
CTTTTAATCGTACTATCGTAGAATTGAAAC	GATTTTGATCCATTATTTTATGCGCCATCTCGACC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TGCTAAAGCATTGATTTATTATTTTTTTGTATATTGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TATAGAGAAAGCCGTTGAAACAGTACGCAAGAGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	AACAAAAATCTCCTACAACAGTTGAAGTATTTGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	CACATATTAGTTCCAAATAGTTGTCCTCCTAAATT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TATAATGGGTTATTTCAGGATCAGTAACATCATATT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTTATTACAAACCATATCTCCACGCACTCCCTACCGAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	AAAAAATGCATCTTCGGTCTTATGCCCTGTTAGCA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TCGGGACAGTCGTCTGCGTACTCCCCCTCGAGGACGT
CTTTTAATCGTACTATCGTAGAATTGAAAC	TAATGCTGTACCACGACACGTTCGGCCGTTACGGGGAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	ACTCGATGCGCTTACGGCGACGGTTTTACGCTGTG
CTTTTAATCGTACTATCGTAGAATTGAAAC	GAAAGTCTACATAAGCGCCCTCCGGAATTTCGACG
CTTTTAATCGTACTATCGTAGAATTGAAAC	GCAGATCCGCACTTCGCCGCGCCGAAGACGCGCGAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	AGCAAAATATAATATATGATAATCAATTTCTTTT
CTTTTAATCGTACTATCGTAGAATTGAAAC	AACCATTTTGCTACAGATTGATTGTTTGACGTAG
CTTTTAATCGTACTATCGTAGAATTGAAAC	GCGACCCGTCCAAGCTTTTCCTTATCTAGACAGAA
CTTTTAATCGTACTATCGTAGAATTGAAAC	GGGGAATGGGAATGGATAGAAAAAGGAGACATACGG
CTTTTAATCGTACTATCGTAGAATTGAAAC	ATGGCTGACATCATAGGGCGAAAGCAAACGGCGTCC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TACAAATTCAAATGGCTGAACAATATCCTGATTGA
CTTTTAATCGTACTATCGTAGAATTGAAAC	TTGTGTGTTACGGTTACACAAGGAATGATGAAATTTT
CTTTTAATCGTACTATCGTAGAATTGAAAC	GAGATAGCGGTCGTCTCCCGATCCTTTTCGCTGCC
CTTTTAATCGTACTATCGTAGAATTGAAAC	TACTTTCCCGCTTTAAATCGGTGAAAAAACAGCATC
CTTTTAATCGTACTATCGTAGAATTGAAAC	GCTGCTCGGCAGGCGATGCCTGCGGCGCTTCTTCTTT
CTTTTAATCGCACTATCGTAGAATTGAAAC	ACGTAGTGCCGATGGGTTCCACTTTCGTTCCTTCC
CTTTTAATCGCACTATCGTAGAATTGAAACGGACGATGAAGAAGGCATTTATTTTAATGATCGACTTTTAATCGCACTATCGTAGAATTGAAACTGAGCCCATTTCCCGTTTCCGTCTGTCACGAGATACTTTTAATCGGACTATCATAGAATTGAAAC	TACACTGCCGGCTTCACCCCCGTAAAGGGGGTGTC
TTTTAATCGGACTATCATAGAATTGAAAC	CGTCAATACATCGAGCTCCCTGATGGGCGGTTTAC
TTTTAATCGGACTATCATAGAATTGAAAC	TCGGCAGGCGCAGGCAGGCCGTCATCGAACAGGGTAT
TTTTAATCGGACTATCATAGAATTGAAAC	TGTTTCAAAGAAAAAGGTGGTGAAGCTAAAGTCATCT
TTTTAATCGGACTATCATAGAATTGAAAC	TTTTATTTAAGTATTTAGTTAGACAATAAGTTATTC
TTTTAATCGGACTATCATAGAATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP013044.1\|WP_060828110.1\|2464339_2465356_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NZ_AP013044.1\|WP_060828114.1\|2473613_2475815_-\|sodium-translocating-pyrophosphatase	unknown	unknown	gnl\|CDD\|376979
NZ_AP013044.1\|WP_060828111.1\|2465355_2465619_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_AP013044.1\|WP_014225640.1\|2471729_2471912_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013044.1\|WP_060828116.1\|2477614_2479909_-\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273429
NZ_AP013044.1\|WP_155642457.1\|2461421_2462714_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|273863
NZ_AP013044.1\|WP_041590867.1\|2480835_2481192_-\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|376737
NZ_AP013044.1\|WP_060828102.1\|2459329_2459566_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372320
NZ_AP013044.1\|WP_060828103.1\|2459552_2459741_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013044.1\|WP_014225647.1\|2480163_2480661_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_AP013044.1\|WP_060830570.1\|2460063_2460486_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013044.1\|WP_060828106.1\|2460510_2461020_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013044.1\|WP_060828109.1\|2463949_2464315_+\|hypothetical-protein	csx20	cls000118_csx20_CAS-I:CAS-III	unknown
NZ_AP013044.1\|WP_060828115.1\|2476473_2477610_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|143502
NZ_AP013044.1\|WP_060828637.1\|2472824_2473349_+\|ferritin	unknown	unknown	gnl\|CDD\|153113
NZ_AP013044.1\|WP_060828118.1\|2484404_2486942_-\|adenosylcobalamin-dependent-ribonucleoside-diphosphate-reductase	unknown	unknown	gnl\|CDD\|274168
NZ_AP013044.1\|WP_014225649.1\|2481280_2481700_+\|polymer-forming-cytoskeletal-protein	unknown	unknown	gnl\|CDD\|377376
NZ_AP013044.1\|WP_060828108.1\|2462715_2463960_+\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|187863
NZ_AP013044.1\|WP_060828117.1\|2481692_2484386_-\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|215512
NZ_AP013044.1\|WP_060828104.1\|2459747_2459939_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP013044.1\|WP_060828110.1\|2464339_2465356_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	1.9598e-173
NZ_AP013044.1\|WP_060828111.1\|2465355_2465619_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.17507e-29
NZ_AP013044.1\|WP_060828116.1\|2477614_2479909_-\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_AP013044.1\|WP_060828108.1\|2462715_2463960_+\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|187863	cd09732, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as TM1812 family.	2.31242e-40
NZ_AP013044.1\|WP_041590867.1\|2480835_2481192_-\|dihydroneopterin-aldolase	gnl\|CDD\|376737	pfam02152, FolB, Dihydroneopterin aldolase. This enzyme EC:4.1.2.25 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate.	1.24987e-38
NZ_AP013044.1\|WP_060828102.1\|2459329_2459566_-\|hypothetical-protein	gnl\|CDD\|372320	pfam12805, FUSC-like, FUSC-like inner membrane protein yccS. This family has similarities to the fusaric acid resistance protein family. The proteins are lodged in the inner membrane.	0.000437645
NZ_AP013044.1\|WP_014225647.1\|2480163_2480661_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	1.40557e-39
NZ_AP013044.1\|WP_060828115.1\|2476473_2477610_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|143502	cd06829, PLPDE_III_CANSDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.	0
NZ_AP013044.1\|WP_060828637.1\|2472824_2473349_+\|ferritin	gnl\|CDD\|153113	cd01055, Nonheme_Ferritin, nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.	3.45951e-80
NZ_AP013044.1\|WP_060828118.1\|2484404_2486942_-\|adenosylcobalamin-dependent-ribonucleoside-diphosphate-reductase	gnl\|CDD\|274168	TIGR02504, ribonucleotide_reductase, ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent. This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (Class II RNRs) related to the characterized species from Pyrococcus, Thermoplasma, Corynebacterium, and Deinococcus. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	0
NZ_AP013044.1\|WP_014225649.1\|2481280_2481700_+\|polymer-forming-cytoskeletal-protein	gnl\|CDD\|377376	pfam04519, Bactofilin, Polymer-forming cytoskeletal. This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.	3.69156e-29
NZ_AP013044.1\|WP_155642457.1\|2461421_2462714_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|273863	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.	4.28578e-13
NZ_AP013044.1\|WP_060828117.1\|2481692_2484386_-\|4-alpha-glucanotransferase	gnl\|CDD\|215512	PLN02950, PLN02950, 4-alpha-glucanotransferase.	0
NZ_AP013044.1\|WP_060828114.1\|2473613_2475815_-\|sodium-translocating-pyrophosphatase	gnl\|CDD\|376979	pfam03030, H_PPase, Inorganic H+ pyrophosphatase. The H+ pyrophosphatase is an transmembrane proton pump involved in establishing the H+ electrochemical potential difference between the vacuole lumen and the cell cytosol. Vacuolar-type H(+)-translocating inorganic pyrophosphatases have long been considered to be restricted to plants and to a few species of photo-trophic bacteria. However, in recent investigations, these pyrophosphatases have been found in organisms as disparate as thermophilic Archaea and parasitic protists.	0

>NZ_AP013044.1|WP_060828111.1|2465355_2465619_+|CRISPR-associated-endonuclease-Cas2
MYVILVYDCGEKRVGKMLKLCRKYLNWIQNSVFEGEITEVKLKELTLKAEKIMNSDEDSLIVFSSRQEKWLDKQIFGKERSSVDNFL
>NZ_AP013044.1|WP_060828110.1|2464339_2465356_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKTYYLFNPGRLSRKDNTLKFVPMEDDGNGIEREGQPRYIPIETVDQFYVFGSLDANSALYNFLGQNDIALHFFDYYENYTGSFMPRDTLLSGRMILAQTKAFQDKKRRMAIARQFIHGAAYNMQKNLQYYNRRGKDMEALLEQIKIYADGIEQASTPDELMGIEGNIRQVYYDAFDLILNDFEMGGRTKQPPRNEVNALISFGNMMCYSQCLRAIHQTQLNPTVSYLHTPGERRYSLALDISEIFKPILVDRVIFKLLNKKEIQERHFDKRLNSCLLNPSGKKIFVKAMEERFNETIKHRSLNRNVSYKHLIKLECYKLAKHLLGMEDYKPFKMYW
>NZ_AP013044.1|WP_060828109.1|2463949_2464315_+|hypothetical-protein
MLINLSNHPFPEWSERQKREAWRLFGEVEDWHFPPIDPESTASEIEKLAEDYFQKLAVRIASIPDVAIHLMGEMTFSFALLKKLQESKIDCYASTANRNVNILASGEKVVRFDFVKFRKYG
>NZ_AP013044.1|WP_060828108.1|2462715_2463960_+|TIGR02221-family-CRISPR-associated-protein
MGRKVLISFIGTGPVDNKNNSGKRVYKTARYRFEEKEIETSFVSIALGEFLNIDTFYLFGTMKSMWEEVYLKFATQNKKEIDDNYWLQISEQCVENANHTSKIDNVSFNKIAQIIGNDSKIFPIYYGLNQLEIEKNFSIFVGAMDYLRDGDEIFLDITHSFRSLPLFATTALSFIKDVANKKIHLSGIYYGMLEAGREFDNNIVPVVDLSYISELQNWIKGAHSFYHFGNGRLLAELLKEKDKTQSEKLIQFTNVLSMNFIHEIKSQINLLTSLASKDKEYALPEKLILPEAFKSFTKRFSRLNRLSEYQFELSIWHKDNSNFALSYLCLVEAILSFVCEQEKFNATAKDKRDEAKKLILKDGRYSEINPIYTKANGYRKNSAHLVGDITSKANEAVKKLNDFHSDFKKILYAH
>NZ_AP013044.1|WP_155642457.1|2461421_2462714_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MAALIHIRIKPSHLRVRDLHFTSFPLHFASFVFHFIIIIFALIFLFQFLTRQHLLTFNIIPLTIGDGNTLSAFADYVLEKGKIHYINQQIIRDKMGKNPELIDFYVEGMIRGKSNTTNTFDLKNFIFNRLKLTLQQVASHCIEAKNVSGKKEFYTVVKNAGQSPYIPGSTLKGAIKTALLYDWLIDAKNDWCENYLENLNNKEERVRLEAQLMTEFDKFELGVSDSSLLEFDTLQAIDIKRLNIKKGTLDIPQTREAVKENIACECEIRNVRKLIAEKADGTKVYKNYSWEELCRIINTFSRHSSDAEWTILSETGKKIDDDIYFSLEDFYEDVEKKTESSTTAYLRLGTGKGFYFNSIALALYDCDGTENKGQFLKFLKTCGYGKVYNTKQRQVEEYDLNPDEFPITRFVEITETKPLGWIQLECLNKE
>NZ_AP013044.1|WP_060828106.1|2460510_2461020_+|hypothetical-protein
MKKVEQTISGSHNIQVSGDYITTQKVVRQVEVLHDPNLHITDEQAHHIKELVLDLAKDNPKISYQGAYSLLYKRFKITKYSLLPREKYEEATKFLQKQIAIYRPALRKTNNEKYRNDMYKAIHARSRQLNIDIHEYATTVLETKTPVKSLKELSDTRLKKLYTKLFSQR
>NZ_AP013044.1|WP_060830570.1|2460063_2460486_+|hypothetical-protein
MKAIERLYTYLKHKGIKPTNFERNIGLSSGYLSTQKKRNADMGESVLIKINDNCRDLNLEWLLTGVDPMIKEQEKGGVYQSISGNNNMQSGHGSKNDQNVGISTDIIKEIENLKNQVSNKDKIIEALMKQNEKLINKLTE
>NZ_AP013044.1|WP_060828104.1|2459747_2459939_-|hypothetical-protein
MSEKRVIVAGLAIGTREKIARSLGCCTKMVSLAVQGRKRTPLAKKIRHVAIQQYGGVEVEVSK
>NZ_AP013044.1|WP_060828103.1|2459552_2459741_-|hypothetical-protein
MDAKKLVKGKKYEYVRKDGSVHILEYAYPTINSYVFKMPHCNTAHFMTRSMVEERIREHESE
>NZ_AP013044.1|WP_060828102.1|2459329_2459566_-|hypothetical-protein
MKANKWDLAWMVLGAALCIVACVTLVVCVVEIAVKQPVALLGALFCCAALFIMLGNFIEVALEIYKNRKKNEKQDEKV
>NZ_AP013044.1|WP_014225640.1|2471729_2471912_+|hypothetical-protein
MKALLLSFFAVILCYALFFDREEPLTPVDEMNYTIPTEAREQIHLSDSTVYYAKCINPLF
>NZ_AP013044.1|WP_060828637.1|2472824_2473349_+|ferritin
MFNKKIETAINDQINAELWSAYLYLSMSAYCYDNGYNGVANWYQVQFKEEQDHAMILFNYVISRGGSVTLKPIEKVPTKWDSLLDSFEETLKHERIVTGLINDLYTLALQESDYATQSMLKWFIDEQVEEEETALDIINNLKMIKDNGYGLYMLDKELSGRTYKTAAPLTKSGE
>NZ_AP013044.1|WP_060828114.1|2473613_2475815_-|sodium-translocating-pyrophosphatase
METLFWFVPLASVLALLFAGLFYKQMRKASEGTETMREIAAHVRKGAMAYLKQQYKVVTVVFIVLALFFAVLAYGFNVQNPWVPFAFLTGGFFSGLAGFIGMKTATYASARTANAARNSLNEGLKLAFRSGAVMGLVVVGLGLLDISLWYLVLDYFIDTTGAQKLVIITTTMLTFGMGASTQALFARVGGGIYTKAADVGADLVGKVEAGIPEDDPRNPATIADNVGDNVGDVAGMGADLYESYCGSILATAALGASAFYDGADLQAKAVLAPMLIAAAGILLSIVGIYTVRTKEGAGMQQLLKSLGTGVNLSSVLIAVAAFGILYLLQMPNWFGISCSVVVGLIAGVIIGQSTEYYTSHSHKPTQSIAHSSNSGPATVIISGLGIGMVSTAIPVLTITCAIILAFLCATGFDTANLLTAGNLSLGLYGIGIAAVGMLSTLGITLATDAYGPIADNAGGNAEMSKLEPHVRQRTDVLDALGNTTAATGKGFAIGSAALTALALLASYIEEVKMGLQHIGTTTIDIAGRTVEVTRATIPDFMAYYQVDLMNPKVLIGVFIGSMMAFLFCGLTMNAVGRAARKMVEEVRRQFREIKGILTGEATPDYARCVAISTQGAQREMLFPSILAIIAPILVGIIFGVAGVMGLLVGGLGAGFVLAVFMANAGGAWDNAKKYIEEGHHGGKGSEAHKATVVGDTVGDPFKDTSGPSLNILIKLMSMVAIVMAGLTVAFSLL
>NZ_AP013044.1|WP_060828115.1|2476473_2477610_-|carboxynorspermidine-decarboxylase
MDIQTIPSPCYVIEESLLRRNLTLIKDVKERAGIEIIMALKAFAMWKVFPIVREYIPYATASSVYEARLVYEELGTPAHTYSPAYTEADFPHLLKCSSHITFNSLSQFERFYPMVFADGRRISCGLRINPEYSDVATDLYNPCAPGSRMGITSDKLPDQLPEGVEGLHFHTLCESSAQDLANTLQAVERRFGRWLSQVRWLNMGGGHLMTCKGYDIDFLLRLLNEFKAKYPHLQIIMEPGSAFFWQTGFLRTTVVDLVENNGVETAVIDASFTCHMPDCLEMPYKPAVRHATDAAPGKPTYRIGGCSCLSGDFMGDWSFDRPLHIGDPLIFEDMIHYTTVKTTMFNGIQHPSLAILREDGTLDMLRAFTYEDYKSRMS
>NZ_AP013044.1|WP_060828116.1|2477614_2479909_-|UvrD-helicase-domain-containing-protein
MNHSILDELNDNQREIVLYCDGPAMVVAGAGSGKTRVLTYKIIHLLEQGLAPYSILALTFTNKAAREMKHRIATLTDESLGRRLSMGTFHSIFYRILRREAEAIGYRPDFTIYDASDSKNLIRSIIKEMQLDEKTYRPGMVQSRISNAKNRLITGEAYERNKELLEYDTKSKVPMLHEIYRRYQSRCYQAGVMDFDELLLQTNLLFRDHRQVLEKYQELFRYVLVDEYQDTNFAQHLIVTRLCEKHRRICVVGDDAQSIYSFRGANIDNMLRFKDQYPDYRLFKLERNYRSTQNIVNAANSLIRKNKGQIPKHVYSENEPGSKIRVLSAYSDYEEGYLIASQILELRMNERSSYAHFAVLYRTNAQSRILEEALRKRNIAYKIYGGQSFYQRKEIKDLIAYFRVIVNPHDEEALKRIINYPARGVGDATVGKLLSAADRHQVSVWTVLSQPADYSVPIHEGTARKLREFQTLMEELMTESTRLPAKEMAELTIKRSGIAAQLFQDRSVEGISRQENMQELLKAIHEFCENKREEGNERVSLADFLMEVSLLTDQDSDKEEDTDKVTLMTVHAAKGLEFDHVIIAGMEENLFPSSMAMDSVRAIEEERRLFYVAITRAKRHCIITCAKSRFRNGQHQISSPSHFLDDIDPTYLHRPDDSGMIRQPIDPQRYEPACSRASYSPQPTRNTSSPSRLKRIEHKEAETIKQVESLNGLHVGDTIRHERFGKGKIVSLEGEGSDAKATVHFDYSGSRTLLLKYAKITVIK
>NZ_AP013044.1|WP_014225647.1|2480163_2480661_+|HU-family-DNA-binding-protein
MRGFIKGVAPSTSLSFFLFLRKYLGPYGENCTFLKKKWLIIVDSQIFKLYLRPEIKRKNEIDYRFIHYYFLIYNIMNKTEFINAVAEKAGLSKVDGKKAVEAMVKTIQGEMKKGEKVSILGFGSFSVVEKASRKGVNPQTKKVINIPARKVIKFKPGTDLTRVVK
>NZ_AP013044.1|WP_041590867.1|2480835_2481192_-|dihydroneopterin-aldolase
MKGKIELQGMKFHAYHGVLPQETRVGGEFVVNLSFSMSHLRSLQTDNLADTISYAEVYELVKTEMEVPSQLLEHVAGRISAALKTHFPELSGLRLKISKKSPPLGGEVESASVILEDE
>NZ_AP013044.1|WP_014225649.1|2481280_2481700_+|polymer-forming-cytoskeletal-protein
MVRTKNEEIPISSGGVHNVLAAGTIVTGSIASDSDFRLDGRIEGDINCKGKIVIGPKGSIAGNILSDNAEILGDVEGSIRIKEKLVFKSTAIIKGDIFTQTLEIEPGAHFNGTCTMSGKNQTDGMQVPGNKKANVTPIK
>NZ_AP013044.1|WP_060828117.1|2481692_2484386_-|4-alpha-glucanotransferase
MNISFHISFRASSQQRMCVCGSIPELGCNEPVMAKEMACADGEHWSLRLEIPDDMTEIEYHYLLRDADRKATPEPWRRKHRIAFDRTAASYCLYDYWREEPTNIALYTSAFTKNLFAHNGSEPIHEQPDRSLIIRVPNPRVRKNQRVALAGNQACLGHWDTTQAKLLCPSGAAEWEVCLNADEIRFPFEYKFFVCDETKHVCHWEKGDNRVLTEAPSETCEVTVISEYPYREDLPEWKGAGTVIPVFSLRSEQSFGVGDLHDLRLLIDWAEQTQQCVIQVLPMNDTTCTHTWKDSYPYSAISMYALHPMYISLYSMGTLNDPDRMAYFRKKQIALNEKEEVDYEAVERYKTTYCRAFFEQEGAAILSGCDFKRFLENNRKWLTPYAAFCYLRDQYHTADFSQWGKDAIYSPLRIEKLCAENSPAYPEISYVYFLQYVLHSQFQAVSNHARRKGIILKGDLPIGIHRTSVEAWTDTRYFNMNGQAGAPPDDFSAMGQNWSFPTYNWEVMEEDGFTWWKKRFGKMSDYFDSFRIDHILGFFRIWEIPLDYVQGLCGHFRPALPLTAGEIESYGLAFKKEYTLAIIHRKYLPELFGEQTVTVTDHYLFPMDAEHMMLNPFCDTQRKIQRLFKGKEDNVSQQIQSGLYALANEVLFLEDPYEPGKYHPRISSSKSYRYQELTETEQTAFDKLYAYFFYERHHDFWKTTALSRLRPLVATTEMLVCGEDLGMIPDSVHEVMEELHILSLELGRISKVFGQEFTDLKTAPYNSVCTTSTHDMSPLRTWWEEDPKRTQRYAEFVLKETEAPPKECTPEIAERIIAEHLHAHSILTIFPLQDWLAIDHYLRRKDASQERINLPADPDHYWRYRIHIPLEQLLQASEFNQKIRAMLSKSHRTNTIT
>NZ_AP013044.1|WP_060828118.1|2484404_2486942_-|adenosylcobalamin-dependent-ribonucleoside-diphosphate-reductase
MGLKTYTFDEAYQASLDYFTGDELAAKVWVNKYALKDAFGNIYEQTPTDMHRRLAGEVARVEAKYPNPLSEQELFELFDHFRFIIPQGSPMTGIGNDFQIASLSNCFVVGVEGNADSYGAVIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRRGALMMSVSIKHPDAESFIDAKMTEGRVTGANVSVKIDDEFMEAVVSGAMYHQQYPIAGDDPMVTKLIDARSLWKKIIHNAWKSAEPGVLFWDTILRESVPDSYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFSKDAYFDFDLFKKHVGLAQRIMDDIIDLESEKIEKILEKIASDPEGEDIKRTERELWEKIQRKTLAGRRTGVGITAEGDMLAALNLRYGTEEATDFAEKAQKTLALAAYDSSVKMAKERGAFEIYDAKREEHNPFILRLKNESPALYEDMVKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDADVHIDYVDETGDAFEEYVVFHHKFVTWMLANDYPVTKKYTAEEIDHLVALSPYYKATSNDVDWVQKVRMQGRIQKWVDHSISVTINLPNDVSEEMIDKLYVEAWRSGCKGCTVYRDGSRSGVLLSTEKNKKKSEDCMEPPVIVSTRPRELEADVVKFQNNREKWIAFVGLMNGRPYEIFTGLADDEEGIMLPKTVEKGSIIKSYDADGRKHYDFQFKNKRGFKMTLEGLDSKFEPEYWNYAKLISGVLRYGMPISQVIKLVQEMELNNESINTWKNGVARALKKYLPNGTELKGQKCPNCGYETLVYQEGCLICKNCGASRCG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_AP013044_1	1.2\|370394\|35\|NZ_AP013044\|PILER-CR	370394-370428	35	NZ_AP013044.1	370225-370259	1	0.971
NZ_AP013044_1	1.3\|370478\|35\|NZ_AP013044\|PILER-CR	370478-370512	35	NZ_AP013044.1	370225-370259	1	0.971

1. spacer 1.2|370394|35|NZ_AP013044|PILER-CR matches to position: 370225-370259, mismatch: 1, identity: 0.971

aggctttgccccttgggtattgatgatatactcgg	CRISPR spacer
aggctttgcccctttggtattgatgatatactcgg	Protospacer
************** ********************

2. spacer 1.3|370478|35|NZ_AP013044|PILER-CR matches to position: 370225-370259, mismatch: 1, identity: 0.971

aggctttgccccttgggtattgatgatatactcgg	CRISPR spacer
aggctttgcccctttggtattgatgatatactcgg	Protospacer
************** ********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP013044_2	2.46\|2468843\|34\|NZ_AP013044\|PILER-CR,CRISPRCasFinder,CRT	2468843-2468876	34	MK250029	Prevotella phage Lak-C1, complete genome	411267-411300	7	0.794
NZ_AP013044_2	2.46\|2468843\|34\|NZ_AP013044\|PILER-CR,CRISPRCasFinder,CRT	2468843-2468876	34	MK250019	Prevotella phage Lak-A2, complete genome	364672-364705	9	0.735
NZ_AP013044_2	2.57\|2469563\|34\|NZ_AP013044\|CRISPRCasFinder,CRT	2469563-2469596	34	NZ_CP006906	Clostridium baratii str. Sullivan plasmid pCBJ, complete sequence	47487-47520	9	0.735
NZ_AP013044_2	2.57\|2469563\|34\|NZ_AP013044\|CRISPRCasFinder,CRT	2469563-2469596	34	MK448965	Streptococcus phage Javan506, complete genome	12889-12922	9	0.735
NZ_AP013044_2	2.57\|2469563\|34\|NZ_AP013044\|CRISPRCasFinder,CRT	2469563-2469596	34	MK448959	Streptococcus phage Javan488, complete genome	12889-12922	9	0.735
NZ_AP013044_2	2.57\|2469563\|34\|NZ_AP013044\|CRISPRCasFinder,CRT	2469563-2469596	34	MK448949	Streptococcus phage Javan460, complete genome	12889-12922	9	0.735

1. spacer 2.46|2468843|34|NZ_AP013044|PILER-CR,CRISPRCasFinder,CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 7, identity: 0.794

agcaaaatat---aatatatgataatcaatttctttt	CRISPR spacer
---tgaatgtccgaatatttgataatcaatttctttt	Protospacer
    .***.*   ***** ******************

2. spacer 2.46|2468843|34|NZ_AP013044|PILER-CR,CRISPRCasFinder,CRT matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 9, identity: 0.735

agcaaaatataatatatgataatcaatttctttt	CRISPR spacer
tgaatgcccaaatatttgataatcaatttctttt	Protospacer
 * * . .  ***** ******************

3. spacer 2.57|2469563|34|NZ_AP013044|CRISPRCasFinder,CRT matches to NZ_CP006906 (Clostridium baratii str. Sullivan plasmid pCBJ, complete sequence) position: , mismatch: 9, identity: 0.735

ggacgatgaagaaggcatttattttaatgatcga	CRISPR spacer
taaagcacaagaagacatatattttaatgatcta	Protospacer
 .* *   ******.*** ************* *

4. spacer 2.57|2469563|34|NZ_AP013044|CRISPRCasFinder,CRT matches to MK448965 (Streptococcus phage Javan506, complete genome) position: , mismatch: 9, identity: 0.735

ggacgat-----gaagaaggcatttattttaatgatcga	CRISPR spacer
-----atttttggttgaagggatttattttaatgattga	Protospacer
     **     *  ***** ***************.**

5. spacer 2.57|2469563|34|NZ_AP013044|CRISPRCasFinder,CRT matches to MK448959 (Streptococcus phage Javan488, complete genome) position: , mismatch: 9, identity: 0.735

ggacgat-----gaagaaggcatttattttaatgatcga	CRISPR spacer
-----atttttggttgaagggatttattttaatgattga	Protospacer
     **     *  ***** ***************.**

6. spacer 2.57|2469563|34|NZ_AP013044|CRISPRCasFinder,CRT matches to MK448949 (Streptococcus phage Javan460, complete genome) position: , mismatch: 9, identity: 0.735

ggacgat-----gaagaaggcatttattttaatgatcga	CRISPR spacer
-----atttttggttgaagggatttattttaatgattga	Protospacer
     **     *  ***** ***************.**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

652639 : 680470

Riemerella_phage(62.5%)

tail,terminase,capsid,portal,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060827341.1\|652639_653107_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_060827342.1\|653114_653942_-	hypothetical protein	NA	NA	NA	NA
WP_060827343.1\|653946_654231_-	hypothetical protein	NA	NA	NA	NA
WP_060827344.1\|654250_657382_-\|tail	phage tail protein	F5A399	Riemerella_phage	3.3e-124	37.2
WP_060827345.1\|657384_657807_-	hypothetical protein	NA	NA	NA	NA
WP_060828542.1\|657964_658369_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_060827346.1\|658498_658903_-	hypothetical protein	NA	NA	NA	NA
WP_060827347.1\|658985_659171_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_060827348.1\|659320_659578_-	hypothetical protein	NA	NA	NA	NA
WP_060827349.1\|659574_660378_-	phage antirepressor KilAC domain-containing protein	F5A3A8	Riemerella_phage	8.4e-16	41.7
WP_060827350.1\|660667_660910_+	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_060827351.1\|660912_661320_+	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_060827352.1\|661427_661937_+	SocA family protein	NA	NA	NA	NA
WP_060827353.1\|661933_662395_+	hypothetical protein	NA	NA	NA	NA
WP_060827354.1\|662544_663363_-	hypothetical protein	NA	NA	NA	NA
WP_060827355.1\|663420_667398_-	hypothetical protein	NA	NA	NA	NA
WP_060827356.1\|667611_668187_-	hypothetical protein	NA	NA	NA	NA
WP_060827357.1\|668273_668753_-	hypothetical protein	NA	NA	NA	NA
WP_060827358.1\|668765_669179_-	hypothetical protein	F5A3B2	Riemerella_phage	8.2e-07	28.0
WP_070098939.1\|669175_669637_-	hypothetical protein	F5A3B3	Riemerella_phage	1.1e-20	40.3
WP_060827360.1\|669627_669963_-	hypothetical protein	NA	NA	NA	NA
WP_060827361.1\|669964_670279_-	hypothetical protein	NA	NA	NA	NA
WP_060827362.1\|670344_671451_-\|capsid	major capsid protein	NA	NA	NA	NA
WP_060827363.1\|671471_672032_-	hypothetical protein	NA	NA	NA	NA
WP_060827364.1\|672050_672761_-	hypothetical protein	NA	NA	NA	NA
WP_060827366.1\|673172_673949_+	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	1.6e-11	26.3
WP_060827367.1\|673945_674281_+	hypothetical protein	NA	NA	NA	NA
WP_060827368.1\|674273_676844_-	hypothetical protein	F5A3C5	Riemerella_phage	7.0e-48	32.4
WP_060827369.1\|676885_678349_-\|portal	phage portal protein	NA	NA	NA	NA
WP_081094369.1\|678377_679844_-\|terminase	phage terminase large subunit	H2A0E8	Bacteroides_phage	3.0e-88	43.1
WP_060827370.1\|679840_680470_-\|terminase	terminase small subunit	E1ABZ9	Pseudoalteromonas_phage	1.4e-05	40.3

DBSCAN-SWA_2

1311440 : 1403823

Catovirus(12.5%)

protease,transposase,tRNA,integrase

attL 1401460:1401475|attR 1404840:1404855

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060827659.1\|1311440_1314071_+\|protease	zinc-dependent metalloprotease	NA	NA	NA	NA
WP_060827660.1\|1314107_1317443_+	SusC/RagA family TonB-linked outer membrane protein	NA	NA	NA	NA
WP_046824781.1\|1317456_1318806_+	RagB/SusD family nutrient uptake outer membrane protein	NA	NA	NA	NA
WP_060828572.1\|1319131_1321123_-	OmpA family protein	NA	NA	NA	NA
WP_060828573.1\|1321159_1322377_-\|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
WP_060827661.1\|1322429_1326506_-	response regulator	NA	NA	NA	NA
WP_060827662.1\|1326746_1328597_+	alpha-1,3-galactosidase B	NA	NA	NA	NA
WP_060828574.1\|1328703_1330176_-\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	5.3e-40	26.7
WP_046824762.1\|1330295_1331021_+	3-oxoacyl-ACP reductase FabG	M1NMS3	Moumouvirus	2.9e-07	33.3
WP_014224678.1\|1331104_1331350_+	hypothetical protein	NA	NA	NA	NA
WP_060827663.1\|1331351_1332260_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA
WP_060827664.1\|1332237_1333323_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_060827665.1\|1333344_1333800_+	hypothetical protein	NA	NA	NA	NA
WP_046824765.1\|1333810_1334236_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_060827666.1\|1334232_1335420_+	hypothetical protein	NA	NA	NA	NA
WP_060827667.1\|1335416_1336049_+	hypothetical protein	NA	NA	NA	NA
WP_046824767.1\|1336067_1336325_+	acyl carrier protein	NA	NA	NA	NA
WP_155642414.1\|1336464_1340976_-	hypothetical protein	NA	NA	NA	NA
WP_155642415.1\|1341037_1342129_-	hypothetical protein	NA	NA	NA	NA
WP_172794524.1\|1342545_1343511_+	DUF5106 domain-containing protein	NA	NA	NA	NA
WP_046824771.1\|1343516_1344080_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_014224689.1\|1344163_1344385_+	DUF2795 domain-containing protein	NA	NA	NA	NA
WP_014224690.1\|1344488_1345481_+	PorP/SprF family type IX secretion system membrane protein	NA	NA	NA	NA
WP_041591152.1\|1345514_1346954_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	NA	NA	NA	NA
WP_081094390.1\|1346986_1348075_+	gliding motility protein GldL	NA	NA	NA	NA
WP_060827672.1\|1348126_1349692_+	gliding motility protein GldM	NA	NA	NA	NA
WP_014224694.1\|1349720_1350833_+	gliding motility protein GldN	NA	NA	NA	NA
WP_060827673.1\|1350846_1351488_-	WbqC family protein	NA	NA	NA	NA
WP_060827674.1\|1351491_1352343_-	signal peptidase I	NA	NA	NA	NA
WP_060827675.1\|1352366_1353776_-	signal peptidase I	NA	NA	NA	NA
WP_014224698.1\|1353792_1354524_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_014224699.1\|1354635_1355910_+	DUF2851 family protein	NA	NA	NA	NA
WP_046472645.1\|1356002_1357892_+	Ig-like domain-containing protein	NA	NA	NA	NA
WP_081094391.1\|1357938_1358715_+	DUF3108 domain-containing protein	NA	NA	NA	NA
WP_060827676.1\|1358797_1359703_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	7.5e-21	30.3
WP_155642416.1\|1360029_1365477_+	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_014224706.1\|1365733_1366333_+	glutathione peroxidase	NA	NA	NA	NA
WP_014224707.1\|1366632_1367196_+	ribosome recycling factor	NA	NA	NA	NA
WP_060827678.1\|1367195_1368128_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA
WP_014224709.1\|1368139_1369465_-	dNTP triphosphohydrolase	NA	NA	NA	NA
WP_046825289.1\|1369925_1372946_+	SusC/RagA family TonB-linked outer membrane protein	NA	NA	NA	NA
WP_014224710.1\|1372962_1374615_+	SusD/RagB family nutrient-binding outer membrane lipoprotein	NA	NA	NA	NA
WP_060827679.1\|1375247_1376459_-	acetate kinase	NA	NA	NA	NA
WP_014224712.1\|1376455_1377475_-	phosphate acetyltransferase	NA	NA	NA	NA
WP_014224713.1\|1377528_1378302_-	TIGR00159 family protein	NA	NA	NA	NA
WP_014224714.1\|1378311_1379154_-	dihydropteroate synthase	NA	NA	NA	NA
WP_060827680.1\|1379231_1380527_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
WP_155642500.1\|1380841_1382107_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_087879682.1\|1382331_1383558_-	U32 family peptidase	Q6DW11	Phage_TP	9.9e-16	25.6
WP_014224718.1\|1383599_1384532_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_060827682.1\|1385329_1385983_-	hypothetical protein	NA	NA	NA	NA
WP_041590984.1\|1386867_1388181_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_060827683.1\|1388488_1389502_-	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	2.3e-71	45.7
WP_060828576.1\|1389562_1392670_-	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_060827684.1\|1392666_1393842_-	AAA family ATPase	NA	NA	NA	NA
WP_060827685.1\|1395053_1396601_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	3.3e-101	42.0
WP_060827686.1\|1396964_1397255_+	DUF3853 family protein	NA	NA	NA	NA
WP_155642501.1\|1398575_1399257_+\|transposase	IS1 family transposase	NA	NA	NA	NA
1401460:1401475	attL	NA	NA	NA	NA
WP_060827689.1\|1401590_1402823_+\|integrase	tyrosine-type recombinase/integrase	Q20DH2	Lactobacillus_phage	4.9e-07	29.0
WP_046824653.1\|1402815_1403823_+\|integrase	tyrosine-type recombinase/integrase	S5MBZ0	Brevibacillus_phage	3.4e-06	21.5
1404840:1404855	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1998229 : 2075734

Mycobacterium_phage(10.0%)

integrase,transposase

attL 2035230:2035289|attR 2075735:2075896

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060827895.1\|1998229_1999129_+\|integrase	tyrosine-type recombinase/integrase	A0A1I9SC88	Mycobacterium_phage	8.3e-12	29.7
WP_014225268.1\|1999140_1999440_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_014225269.1\|1999856_2001044_+	elongation factor Tu	A0A1V0SLW6	Klosneuvirus	4.0e-14	26.4
WP_014225270.1\|2001181_2001370_+	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_014225271.1\|2001381_2001924_+	transcription termination/antitermination factor NusG	NA	NA	NA	NA
WP_014225272.1\|2001985_2002432_+	50S ribosomal protein L11	NA	NA	NA	NA
WP_014225273.1\|2002446_2003142_+	50S ribosomal protein L1	NA	NA	NA	NA
WP_014225274.1\|2003164_2003692_+	50S ribosomal protein L10	NA	NA	NA	NA
WP_014225275.1\|2003734_2004109_+	50S ribosomal protein L7/L12	NA	NA	NA	NA
WP_014225276.1\|2004225_2008038_+	DNA-directed RNA polymerase subunit beta	E3T4Z4	Cafeteria_roenbergensis_virus	6.8e-31	24.7
WP_014225277.1\|2008066_2012344_+	DNA-directed RNA polymerase subunit beta'	A0A2I7QNZ7	Vibrio_phage	6.4e-70	26.5
WP_060827896.1\|2012368_2013904_+	DUF853 family protein	A0A248XCZ8	Klebsiella_phage	4.8e-76	41.7
WP_060828603.1\|2014325_2015444_+	isochorismate synthase	NA	NA	NA	NA
WP_060827897.1\|2015443_2017177_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
WP_021679043.1\|2017195_2018020_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_060827898.1\|2018019_2019090_+	o-succinylbenzoate synthase	NA	NA	NA	NA
WP_060827899.1\|2019113_2020163_+	AMP-binding protein	NA	NA	NA	NA
WP_060827901.1\|2021318_2022545_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_060827902.1\|2022593_2025224_+	hypothetical protein	NA	NA	NA	NA
WP_060827903.1\|2025408_2028120_+	DEAD/DEAH box helicase family protein	A0A2I7SC38	Paenibacillus_phage	7.8e-13	24.1
WP_060827904.1\|2028123_2029545_+	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	1.0e-27	27.3
WP_060827905.1\|2029550_2030711_+	DUF1016 family protein	A0A0U2BZN7	Salmonella_phage	1.5e-18	35.3
WP_060828604.1\|2030901_2032089_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_046472573.1\|2032418_2033771_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_060827268.1\|2034059_2035229_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
2035230:2035289	attL	NA	NA	NA	NA
WP_099046133.1\|2036776_2036980_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_060827907.1\|2037039_2037687_-	hypothetical protein	NA	NA	NA	NA
WP_141728777.1\|2038126_2038495_+	hypothetical protein	NA	NA	NA	NA
WP_046472589.1\|2038504_2038867_+	hypothetical protein	NA	NA	NA	NA
WP_041590817.1\|2039069_2039369_-\|transposase	transposase	NA	NA	NA	NA
WP_060827908.1\|2039305_2040196_-	DUF4372 domain-containing protein	NA	NA	NA	NA
WP_060827909.1\|2040312_2041158_+	trypsin-like peptidase domain-containing protein	A0A2H4JE36	uncultured_Caudovirales_phage	3.1e-37	37.2
WP_014225300.1\|2041508_2042453_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_060827910.1\|2042484_2043318_-	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	1.3e-22	29.6
WP_060827911.1\|2043336_2045313_-	hypothetical protein	NA	NA	NA	NA
WP_014225303.1\|2045318_2046062_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_060827912.1\|2046168_2049369_+	hypothetical protein	NA	NA	NA	NA
WP_081094402.1\|2049278_2050877_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA
WP_060827914.1\|2050869_2053179_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA
WP_060827915.1\|2053267_2055763_-	hypothetical protein	NA	NA	NA	NA
WP_060827916.1\|2056102_2056915_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_070098983.1\|2056917_2058342_+	hypothetical protein	NA	NA	NA	NA
WP_155642572.1\|2058613_2059597_+	hypothetical protein	NA	NA	NA	NA
WP_060831211.1\|2059586_2060402_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_060827919.1\|2060398_2061661_+	glycosyltransferase	NA	NA	NA	NA
WP_081094404.1\|2061682_2061946_+	acyltransferase	NA	NA	NA	NA
WP_081094405.1\|2062008_2063352_+	glycosyltransferase	NA	NA	NA	NA
WP_060827921.1\|2063346_2064480_-	DUF1972 domain-containing protein	NA	NA	NA	NA
WP_060827922.1\|2064496_2064970_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_041590822.1\|2065168_2065540_+	DUF4783 domain-containing protein	NA	NA	NA	NA
WP_014225316.1\|2065563_2066412_+	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_060827923.1\|2066436_2067558_+	carboxypeptidase-like regulatory domain-containing protein	NA	NA	NA	NA
WP_172794529.1\|2067500_2069129_+	hypothetical protein	NA	NA	NA	NA
WP_060827925.1\|2069137_2069710_-	N-acetyltransferase	NA	NA	NA	NA
WP_060827926.1\|2069731_2070436_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_060827927.1\|2070789_2073045_-	leucine-rich repeat protein	NA	NA	NA	NA
WP_060827268.1\|2074564_2075734_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
2075735:2075896	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3149174 : 3187318

Wolbachia_phage(20.0%)

transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060828385.1\|3149174_3149456_+\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	1.5e-12	39.8
WP_155642479.1\|3149506_3149749_-\|transposase	transposase	NA	NA	NA	NA
WP_155642480.1\|3149732_3150518_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-14	41.1
WP_041590952.1\|3150897_3151104_+	hypothetical protein	NA	NA	NA	NA
WP_060828386.1\|3151106_3151532_-	hypothetical protein	NA	NA	NA	NA
WP_155642481.1\|3151534_3152116_-	hypothetical protein	NA	NA	NA	NA
WP_081094444.1\|3152741_3156347_+	DNA methylase	A0A248SL14	Klebsiella_phage	1.0e-129	30.3
WP_097531559.1\|3156524_3157121_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_060828663.1\|3157963_3159094_+	beta-ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_060828388.1\|3159117_3161370_+	RND family transporter	NA	NA	NA	NA
WP_021644789.1\|3161366_3162101_+	outer membrane lipoprotein-sorting protein	NA	NA	NA	NA
WP_060828389.1\|3162112_3163519_+	hypothetical protein	NA	NA	NA	NA
WP_021665022.1\|3163573_3166003_+	DVUA0089 family protein	NA	NA	NA	NA
WP_014226283.1\|3166013_3166541_+	hypothetical protein	NA	NA	NA	NA
WP_060828390.1\|3166625_3167273_+	HAD family hydrolase	NA	NA	NA	NA
WP_081094445.1\|3167265_3168705_-	putative DNA binding domain-containing protein	A0A1B3AYT3	Gordonia_phage	2.0e-23	26.9
WP_041590537.1\|3168846_3169782_-\|transposase	IS1595-like element ISTfo1 family transposase	NA	NA	NA	NA
WP_097531402.1\|3169907_3170075_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_060828391.1\|3170174_3171500_+	ATP-binding protein	NA	NA	NA	NA
WP_013815645.1\|3171556_3171751_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_172793902.1\|3173375_3174362_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_060828392.1\|3174612_3176958_-	TonB-dependent receptor family protein	NA	NA	NA	NA
WP_060828393.1\|3176969_3178349_-	SPASM domain-containing protein	NA	NA	NA	NA
WP_070098994.1\|3180734_3181535_-	DNA adenine methylase	Q0SPG6	Clostridium_phage	4.6e-22	32.4
WP_060828395.1\|3181739_3182933_-	hypothetical protein	NA	NA	NA	NA
WP_060828396.1\|3182943_3183285_-	hypothetical protein	NA	NA	NA	NA
WP_060828397.1\|3183291_3183615_-	hypothetical protein	NA	NA	NA	NA
WP_060828398.1\|3183620_3183890_-	hypothetical protein	NA	NA	NA	NA
WP_060828399.1\|3183898_3184180_-	hypothetical protein	NA	NA	NA	NA
WP_060828400.1\|3184189_3187318_-\|tail	phage tail protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_AP013044.1|WP_060827947.1|2135799_2136237_+|PcfK-like-family-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_AP013044.1|WP_060827947.1|2135799_2136237_+|PcfK-like-family-protein

2135799_2136237_+

145 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|40	0.6097560975609756	0.8551724137931035	0.8723404255319149

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP013044

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information