CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP014627	Pseudomonas sp. Os17	4 crisprs	DinG,csa3,cas3,PD-DExK,DEDDh,WYL	1	0	6	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_AP014627_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014627_1

160435-160557

Orphan

Consensus_repeat	Method
GGCCCCTTCGCTGGCAAGCCAGCTCCTACGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014627_1

>merge|NZ_AP014627|1|160435-160557|CRISPRCasFinder
GGCCCCTTCGCTGGCAAGCCAGCTCCTACGGTGCATCTGCAATCTGCGTCGCCCCTGTGGGAGCCGGCTTGCCGGCGAAAGCGGTCTTGATGGCCTCTTCGCTGGCAAGCCAGCTCCTACGGT

>NZ_AP014627|1|1|160435-160557|CRISPRCasFinder
GGCCCCTTCGCTGGCAAGCCAGCTCCTACGGT	GCATCTGCAATCTGCGTCGCCCCTGTGGGAGCCGGCTTGCCGGCGAAAGCGGTCTTGAT
GGCCTCTTCGCTGGCAAGCCAGCTCCTACGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014627.1\|WP_173655920.1\|156471_157497_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NZ_AP014627.1\|WP_060836927.1\|164977_165487_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|182018
NZ_AP014627.1\|WP_060836932.1\|170703_172896_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014627.1\|WP_060836916.1\|150314_151667_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_AP014627.1\|WP_060836928.1\|165483_166437_+\|FecR-domain-containing-protein	unknown	unknown	gnl\|CDD\|236622
NZ_AP014627.1\|WP_060836919.1\|155545_156433_+\|TauD/TfdA-family-dioxygenase	unknown	unknown	gnl\|CDD\|225086
NZ_AP014627.1\|WP_060836923.1\|159477_160404_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176149
NZ_AP014627.1\|WP_060836917.1\|151704_153861_+\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|274550
NZ_AP014627.1\|WP_148654938.1\|136388_147206_-\|type-I-secretion-C-terminal-target-domain-containing-protein	unknown	unknown	gnl\|CDD\|238119
NZ_AP014627.1\|WP_060836922.1\|158396_159263_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_AP014627.1\|WP_173655921.1\|169966_170701_-\|DUF3142-domain-containing-protein	unknown	unknown	gnl\|CDD\|371478
NZ_AP014627.1\|WP_060836921.1\|157502_158363_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213260
NZ_AP014627.1\|WP_016962584.1\|135888_136227_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014627.1\|WP_060836924.1\|160670_162215_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_AP014627.1\|WP_060836929.1\|166530_168996_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|236643
NZ_AP014627.1\|WP_060836930.1\|169014_169704_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350289
NZ_AP014627.1\|WP_060836918.1\|153850_155218_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_AP014627.1\|WP_060836933.1\|173227_174838_+\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|227621
NZ_AP014627.1\|WP_060836926.1\|163473_164907_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_AP014627.1\|WP_060836925.1\|162229_163300_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482

Protein	Function_ID	Function_description	E-value
NZ_AP014627.1\|WP_173655920.1\|156471_157497_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	4.88084e-37
NZ_AP014627.1\|WP_060836927.1\|164977_165487_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|182018	PRK09651, PRK09651, RNA polymerase sigma factor FecI; Provisional.	1.82569e-55
NZ_AP014627.1\|WP_060836916.1\|150314_151667_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	7.02953e-72
NZ_AP014627.1\|WP_060836928.1\|165483_166437_+\|FecR-domain-containing-protein	gnl\|CDD\|236622	PRK09774, PRK09774, fec operon regulator FecR; Reviewed.	2.29548e-77
NZ_AP014627.1\|WP_060836919.1\|155545_156433_+\|TauD/TfdA-family-dioxygenase	gnl\|CDD\|225086	COG2175, TauD, Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism].	1.14039e-99
NZ_AP014627.1\|WP_060836923.1\|159477_160404_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176149	cd08460, PBP2_DntR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.71023e-94
NZ_AP014627.1\|WP_060836925.1\|162229_163300_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	2.96974e-87
NZ_AP014627.1\|WP_148654938.1\|136388_147206_-\|type-I-secretion-C-terminal-target-domain-containing-protein	gnl\|CDD\|238119	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.	2.87742e-12
NZ_AP014627.1\|WP_060836917.1\|151704_153861_+\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|274550	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_AP014627.1\|WP_060836921.1\|157502_158363_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213260	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters. NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.5207e-106
NZ_AP014627.1\|WP_060836924.1\|160670_162215_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.45341e-35
NZ_AP014627.1\|WP_060836929.1\|166530_168996_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|236643	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional.	0
NZ_AP014627.1\|WP_060836930.1\|169014_169704_-\|NYN-domain-containing-protein	gnl\|CDD\|350289	cd18722, PIN_NicB-like, LabA-like PIN domain of Pseudomonas putida S16 NicB and related proteins. Curiously NicB from Pseudomonas putida S16 is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine. This subfamily also includes the uncharacterized CPP15 (plasmid) protein from Campylobacter jejuni. This subfamily belongs to LabA-like PIN domain family which includes Synechococcus elongatus PCC 7942 LabA, human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	6.75931e-18
NZ_AP014627.1\|WP_060836918.1\|153850_155218_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	4.72913e-128
NZ_AP014627.1\|WP_060836933.1\|173227_174838_+\|glycosyltransferase-family-39-protein	gnl\|CDD\|227621	COG5305, COG5305, Predicted membrane protein [Function unknown].	3.22627e-37
NZ_AP014627.1\|WP_060836922.1\|158396_159263_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	4.17631e-56
NZ_AP014627.1\|WP_060836926.1\|163473_164907_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	3.32854e-94
NZ_AP014627.1\|WP_173655921.1\|169966_170701_-\|DUF3142-domain-containing-protein	gnl\|CDD\|371478	pfam11340, DUF3142, Protein of unknown function (DUF3142). This bacterial family of proteins has no known function.	2.77273e-11

>NZ_AP014627.1|WP_060836923.1|159477_160404_+|LysR-family-transcriptional-regulator
MQLPDMNLLVALDALLDEGSVVGAARRMNLSPAAMSRTLTRIRDALGDPVLVRAGRGLVPTPKALELRSQVRDLVEQAALLFRSADQVDLLTLRRRFNVRANDFFIGVYGGRLIDTLERQAPLCELRFVPEGDGDDEALREGRIDLRISNTRPLTPEVKVQNLFTTAFVGLVREDHPLLDEEITAERFAAFPHISMSRRGIARGPIDAALAEQGLERRVSLIAPSFHAAMFMLPDSDLILPVPQETLLSVSRLGLRLRSFVLPISLPTLVLTQAWHPRYDKDPAHKWFRETLRSSCQATWQEAQPATL
>NZ_AP014627.1|WP_060836922.1|158396_159263_+|ABC-transporter-permease
MSQSSPVREEYEVVLQPLLQVPLERELPLGQRLWQQGWLRKGLILILLALLWEAVARYQNNDLLLPSFVQTASALYQGLLSGELLGKVGISLVVLLKGYLIGIVLAFALTTLAVSTQFGRDLLSTLTSMFNPLPAIALLPLALLWFGLGQNSLIFVLVHSVLWALALNTYAGFLGVSETLRMAGRNYGLKGLRLVLFILIPAALPSILAGLKIGWAFAWRTLIAAELVFGATSGKGGLGWYIFQNRNELYTDKVFAGLAVVILIGLLVENLIFDTLERITVKRWGMQR
>NZ_AP014627.1|WP_060836921.1|157502_158363_+|ABC-transporter-ATP-binding-protein
MNAPLPGHTASNPTAIAEALLAVDQVSLEYRTPQRVVRATHQVSFEIDPADRFVLLGPSGCGKSTLLKAVAGFIQPCEGEIRLQGQRVSQPGPDRIVVFQEFDQLPPWKTVKQNVMFPLLASNTLGRREAEERALHYLEKVGLAAFADAYPHTLSGGMKARVAIARALAMQPKILLMDEPFAALDALTRRKMQEELLLLWEEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEVHSHQYDLQSLGGVAFQQTAQRIHRLLFDEGQGPDTETELDFADIRIAY
>NZ_AP014627.1|WP_173655920.1|156471_157497_+|ABC-transporter-substrate-binding-protein
MPFIPRLGQLATAIGLGFSLLAGSLVAPTAAHAEGEIRIAEQFGIVYLLLNVVRDQHLIEKHGKQEGIDIKVDWTQLSGGAAVNDALLSGSIDIAGAGVGPLLTIWDRTHGRQNVKAVASLGNFPYYLVSNNPKVKTIADFTEKDRIAVPAVGVSVQSRFLQYAAAKQWGDQEFNRLDKYTIAVPHPDATAALIAGGTELTGHFSNPPFQDQALENPNVHVVLNTYDLLGPNSPTVLFATEKFRNDNPKTYKAFVEALAEAAEFAQNDKGAAADTYIRVTKAKIDRAALLKIIDNPQFEFSVTPKNTYPLAEFLYRVGAIKNKPESWKDYFFQDATPLQGS
>NZ_AP014627.1|WP_060836919.1|155545_156433_+|TauD/TfdA-family-dioxygenase
MSASASAAAVAAQAFEIRPFNGAVGAEIIGLDLSRPLNDQDFARIHRAHLDHHVVVFRDQRISPEQQIAFSRRFGELQIHVLKQFLLAGHPEILIVSNIIENGQSIGLGDAGKFWHSDLSYKELPSLGSMLHAQELPAEGGDTLFADMHQAWDKLPEALRKAVEGRSAAHSYTARYSETKFEGNWRPTLTPEQLAQVAEVVHPIVRTHPENGRKALFVSEGFTTRIIGLPEDESAQVLAELYAHSVLPDNVYRHQWQPHDLVFWDNRSLIHLAAGCPSHLRRKLYRTTIQGDAPY
>NZ_AP014627.1|WP_060836918.1|153850_155218_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MLLKSGFKDAIRRYFKGGDSLKGQPLPEVNKALIEDAPRVIRLTIWGIIAFFLFLVLWANFAVIDEVTKGEGKAIPSSKVQKIQNLEGGIVSELYVKEGQVVEAGAPLIRLDDTRFQSNVGETETVRLSMLLRVERLSAEVDERELNFPADAVKDAPGQAASEKSLYQSRRQQLHDEIGGLQEQLIQKQQELREFTSKQAQYRQQLGLQRQEIAMSEPLVAQGAVSPVEVLRLKRAEVETRGQLDATTLAIPRAESAIKEVQRKIDETRGKFRSEALTQLNEARTELNKASATGKALEDRVSRTLVTSPVRGIVKQLMVNTIGGVIQPGSDMVEIVPLNDTLLVEAKIRPQDIAFLHPGQEAIVKFSAYDYTIYGGLKARLEQIGADTITDEDKKTTYYMIKLRTDRSHLGTDEKPLLIIPGMVASVDIITGKKSILSYLLKPIIRARAEALHER
>NZ_AP014627.1|WP_060836917.1|151704_153861_+|type-I-secretion-system-permease/ATPase
MESEASRAQFSHDPRGMHDDPLLDGLLTLCFLHQKPASAAMLTTGLPLPSQRLSAELLPRAAARAGLQGRVLRRKLEQIPTIAMPALLLLKNGRSAVLLGWQGEDQARLLLSESDGGEVCVDRQLVADDYSGQVFFAQPQHKFDVNHGSLIPRARSWFRDTLKRSRWLYADAIAASLLINIIAMAAPLFVMNVYDRVVPNQATSTLWVLSIGIMGAYIFDLILKSLRSLCLDLAGKKTDLIISATLFERIVGMAMKYRPARVGSFAQNIHEFQSLRDFLASLTLTSLIDLPFTLLIFLVIAILGGHLVWIPVLAFPIALGIGYALQKPLVATMEKTMALGAERQSSLIETLAGLDAVKVNNAESERQYQWEQTIGTLSRLELRVKMLSSLAMNITLLIQQLAGVTMIIFGVYQIIDGNLSMGGLIACYMLSGRALSPLASLSGLLTRYQQARVTMTSVDQMMELPQERNFDERPLSRSVLQGAIECRLLNFTYPGQQNPALKNINLVIKPGEKVGIIGRSGSGKSSLAKLLVGLYQPDSGALLVDGVDIRQIDVSELRHNIGYVPQDIQLLAGTLRDNLTSGARYVEDELVLQASELAGVHEFARLHPQGYELQVGERGQNLSGGQRQNVALARALLLNPQILLLDEPTSAMDNTGEERLKQRLESVVQNKTVVLVTHRASLLSLVDRLLVVDRGQILADGPKAVVMEALKKGQISVA
>NZ_AP014627.1|WP_060836916.1|150314_151667_+|TolC-family-outer-membrane-protein
MRFHLLKALPFALAASFVQAQTLPEAMQKALDVHPEIQAGVNSRLAADYQLKAAKGGYLPRVDMLAGYGREGTDNPSTRAGTGSNHWETLNRGESSLRLQQMVFDGFATSSEVGRQQATVNSRAYSLLGTSERTALTVAQVYLDVLTRRQFVQLAEDNLRNHERIYDQIKLRTQRGVGSGADLDQAEARMAQARNNLITEQTNLADAQTNYLSAVGQMPDQLERPASFMAMMPANLDEARRQMLENSPILRSAESDIVAAEKQYDAAKSAFYPRFDAELGRTADNDLDGQNGHNNEWQAMLRMRFNLFAGGSNKADLESKAYQSNQALDIRNNALRVLNEELGLAWNALNNANAQVPIAQQYVDRSTAVRTAYQKQFSLGERTLLDLLDSENELFTASRRLAEIKNIQLFTQYRIKATMGELLKSQGVVAPMASVVQNDAKPKVQLPGMN
>NZ_AP014627.1|WP_148654938.1|136388_147206_-|type-I-secretion-C-terminal-target-domain-containing-protein
MTLSNGQTITIPVGESSGTVNFTAPNDALAGGSSLSTTITKADGGNYEKLEINDKPAETSVTDTPDTTTLSVTATDTVAEGGSIVYTATLTNAAGTPVTVTLSNGAVITIAAGATSGTATVAAPADDVYKDAGKVEVTITKADGGNFENLVTNPAPAVTDVTDTIDTSTVSLTATPSVAEGGIVVYTASVSAPVTGSPVVVTLSNGQTITIPVGESSGTVNFTAPNDALAGGSSLSTTITKADGGNYEKLEINDKPAETSVTDTPDTTTLSVTATDTVAEGGSIVYTATLTNAAGTPVTVTLSNGAVITIAAGATSGTATVAAPADDVYKDAGKVEVTITKAEGGNFENLVTDPAPAVTDVTDTIDTSTVSLTATPSVAEGGIVVYTASVSAPVTGSPVVVTLSNGQTITIPVGESSGTVNFTAPNDALAGGSSLSTTITKADGGNYEKLEINDKPAETSVTDTPDTTTLSVTATDTVAEGGSIVYTATLSNAAGTPVTVTLSNGAVITIAAGATSGTATVAAPADDVYKDAGKVEVTITKAEGGNFENLETNPAPAVTDVTDTIDTSTVSLTATPSVAEGGIVVYTASVTAPVTGSPVVVTLANGQTITIPVGESSGTVNVTAPNDALAGGSSLSTTITKVEGGNYEKLEFSDKPAETSVTDTVDTTNLSLGATGSVAEGGQITYTATLTNAAGTPVTVTLSNGAVITIEAGKTTGTVTVAAPADDVYKDAGKVEATITKAEGGNFENLVTNPAPAVTDVTDTIDNSTVTLKATPSAAEGGNVTYTATVTAPVTGSPVVVTLANGEKITIPVGETTGSVSISAPNDVLVGHTPLTNSITDVSGGNYENLVADKTPVSTTVTDTVDTTNLSLAATPSVAEGGSIVYTATLSNAAGTPVTVTLSNGAVITIAAGATSGTVTVAAPADDVYKDAGKVEATITKAEGGNFENLVPSTTPAVTDVTDTIDTSTVSLTATPSIAEGGIVVYTASVSAPVTGSPVVVTLSNGQTITIPVGESSGTVNFTAPNDALAGGSSLSTTITKADGGNYEKLEINDKPAETSVTDTPDTTTLSLTATDSVAEGGSIVYTATLSNAAGTPVTVTLSNGAVITIAAGATSGTATVAAPADDVYKDAGKVEATITKAEGGNFEHLETNPTPAVTDVTDTIDTSTVSLTATPSVAEGGIVVYTASVSAPVTGSPVVVTLSNGQTITIPVGESSGTVNFTAPNDALAGGSSLSTTITKADGGNYEKLEINDKPAETSVTDTPDTTTLSLSATDSVAEGGSIVYTATLSNAAGTPVTVTLSNGAVITIAAGATSGTATVAAPADDVYKDAGKVEATITKAEGGNFEHLETNPTPAITDVTDTIDTSTVSLKATPSAAEGGNVTYTATVTAPVTGSPVVVTLANGEKITIPVGETTGSVSISAPNDVLVGHTPLTNSITDVSGGNYENLVADKTPVSTTVTDTVDTTNLSLSATPSVAEGGSIVYTATLSNAAGTPVTVTLSNGAVITIAAGATSGTATVAAPADDVYKDAGKVEATITKAEGGNFEKLVPSTTPAVTDVTDTIDNSTVTLKATPSAAEGGNVTYTATVTAPVTGSPVVVTLANGEKITIPVGETTGSVSISAPNDVLVGHTPLTNSITDVSGGNYENLVADKTPVSTTVTDTVDTTNLSLAATPSVAEGGSIVYTATLTNAAGTPVTVTLSNGAVITIAAGATSGTVTVAAPADDVYKDAGKVEATITKAEGGNFEKLVPSTTPAVTDVTDTIDNSTVTLKATPSAAEGGNVTYTATVTAPVTGSPVIVTLANGEKITIPVGETTGSVSISAPNDVLVGHTPLTNSITNVSGGNYENLVADKTPVSTTVTDTVDTTNLSLAATPSVAEGGSIVYTATLSNAAGTPVTVTLSNGAVITIAAGATSGTVTVAAPADDVYKDAGKVEATITKAEGGNFEKLVPSTTPAVTDVTDTIDNSTVTLKATPSAAEGGNVTYTATVTAPVTGSPVVVTLANGEKITIPVGETTGSVSITAPNDVLVGHTPLTNSITNVSGGNYENLVADKSPVSTTVTDTVDTTNLSLSATGTVAEGGQITYTATLSNAAGTPVTVTLSNGAVITIAAGATSGKVTVAAPADDVYKDAGKVEATITKAEGGNFEKLVPSTTPAVTDVTDTIDNSTVTLKATPSAAEGGNVTYTATVTAPVTGSPVVVTLANGEKITIPVGETTGSVSITAPNDVLVGHTPLTNSITNVSGGNYENLVADKSPVSTTVTDTVDTTSVSLSATGTVAEGGSIIYTATLTNAAGTPVTVTLSNGAVINIAAGKTTGTVTVAAPADDVYIDAGKVNASITSATGGNFEKLVPDTTPAVTNVTDTVDTTSVGITGSTSVTEGQTASYTVSLTHPAQTEVTLKISYSGTATDGSDFSGVYTVKIPAGASSATFNVATIDDKITEGTENFVVKIDSATGGNFENLVVGSNNSVTTSIIDNDAPPVIDLDANNSSGATGADYKVTFTEGTAGPGVSIADTDLSITDPDSTMLTGATIVLTNRQPGDSLNLGNSVNGININANSKDGSITLTLSGNATLADYMQQIKNITFTNNSEDPSTTPRTITVTVTDGGNYSNVATTTVNVVAVNDAPTATGGAVTGSEDTPLALTWSNFGVSDVDSPASSLGVKITQLPSDGKLQYLDGSTWKDVANNQTISKADIDAGKLRFTPDANESGTNGYGGSGVGNQQADYAQIKFQPTDGQALGSTGTVTVDITPVADAPTLSVAGNNVNSVGLLKEVWTGLSGLGTDGSGASASTLKSVIDAAGTPNSSSLATNVQSDGNITPGTASKTSGLIYLEAGKSYTFSGTGDDSLLVTIGGKNVASTTWGAGGNLNGTFTPTTSGYYTIDIYHHNQSGPGSYDVNLSVNGATAVDLSNAGVPLYTGVTDLTNAGVSVSDLHGTNGEGYYDGYKLNEGGEGGSVHLSKISTGLTDTDGSETLSVKISGIPAGSVLSDGAGHTFTATASSGEANVTGWNLGNLTVTPPPYYNGSFNLNVTSTSTESLGGSASSTAQIPVKVYPATYNAVVATSGDDTVTGTDGNDIVVADIGGLTVVPGTNYNIAFMVDSSGSMGSSIAAAKNSLTAVFNTLKNSIGGAGSGTVNIFLADFDSQVNKSVSVNLNDPNALAQLKAVLDSMSSGGGTNYEDVFKTTANFFQSSLATSNTNATNLTYFITDGKPTYYQTGEQTNPTLYGNVRLDDVVTTSNYKLGDTFSTYIDNTHALTVNANGTVVLQTYSSNWWGSGWNSATLGTLHAQGDGTYELSTLAGNGSTTNSASINNSNEGFVLLSKLSQVEAIGLNNDVSLNDLKPYDSDGKPQTNIDPNDLANSIIGHTEATMPGADTVSGGNGNDILFGDLVSFNGVAGEGYQAMQAYVAKQTGVDVSQVSTSNVHQYITEHYTEFDVSGSHDGNDTLLGGDGNDILFGQGGNDFLDGGRGNDILLGGTGNDTLIGGKGNDILIGGSGADTFVWKAGDTGNDVIKDFKASEGDRIDLRDLLQGESASTIDNFLKITTVDGVSTLQVSSEGKLNAAGGLANADVTIKLEGNNWSNANINSLIAGSDPTIKIDHNNS
>NZ_AP014627.1|WP_016962584.1|135888_136227_-|hypothetical-protein
MFYVQRDAQGQLIRVEAAAYAEATETLPADHLEIQTWFANEAVEVSLKQLKQSDLEMIRVLDDLIQVLTSKGVIRVTDLPAAAQAKLMDRTQARVALGGLSRLINDDETGLI
>NZ_AP014627.1|WP_060836924.1|160670_162215_+|MFS-transporter
MSSLAVAAPASVEAASKPAAIAPPVFGPRIIIGLVGVLLAVLVCGLNEMVTKIALADIRGALFIGFDEGTWLVACYTATSVAAMAFAPWCSVTFSLRRFTLCAIALFTLLGVLCPFAPNYQSLLLLRTLQGLAGGALPPMLMTVALRFLPANVKLYGLAGYALTATFGPSLGTPLAALWTEYVGWQWAFWQVVAPCLLAMVAVAYGLPQDPLRLERFKQFNWRGLLLGFPAICMLVIGILQGNRLDWFHSPLISVLLGGGLVLLVLFLINEWSQPIPFFKLQMLGIRNLSFALLTLAGVLVVLTAVIIIPSAYLTQVQGYRPLQTAPVMLVMALPQLLALPLVAALCNLRWVDCRWVLGIGLGMLVLSCLGGTHLTAAWIRDDFYVLQLLQIFGQPMAVLPLLMLSTGSITPLEGPFASAWFNTVKGLAAVIATGVLDVLTTHRLHFHSTMLVDSLGNSPLVDDRLAGLAQRLHQQAVVLTSADLYFCMAGVAAALILLIFWMPTRIYPPRAAT
>NZ_AP014627.1|WP_060836925.1|162229_163300_+|HlyD-family-secretion-protein
MTLQSKDKIAIAVVTVAALGALAYVAAPGLFGRSSAQSTNDAFIAADYTLVAPRVAGFIKEVLVEDNQQVKAGQLLALIDDRDLRAAAQAADAETLVAKAQLQNARATLDRQSSVIAQAQAALSAAQAERAFAEHELNRYNHLAGVGAGTVQNAQQAKTRIDQASARLATATAALAAERKQVEILTAQRDAAEGGLKRAQAALEMASYELSYTRIVAPVDGMVGERAVRVGAYVTPGSKILAVVPLQQAYVLANFQETQLTAMHPGQTVEVRVDSLGDETLRGRIESLAPATGVTFAAVKPDNATGNFTKVVQRIPVKIVLEPNQPMAERLRVGMSVEASVDTRSSATSAREVTQR
>NZ_AP014627.1|WP_060836926.1|163473_164907_+|efflux-transporter-outer-membrane-subunit
MLTLSALALAACNVGPDFQRPQATQVQAWSVPAPGAASRAVDSPMQERWWEVFNDPQLSALSRRALSDNLDLQLASSRLQQSRAARQVISAERYPSTSANGGYARKRNSAEGLNDPSGNNGKSAFNLWEAGFSAAWELDVWGRVRRETEAADATLEVAENDRRGVLLSVLAETAQDYIQLRGVQNILAVTEQNLEVARHSLKLSQLRLADGVATDLDVAEAAAQVATIEAQRPSLQQRQAQLINALSLLLGEPPQALHQQLASAAPVPQPPSRVAIGLPSQLAERRPDIRQAEARLHAATASIGVAKGDFYPRITLSGNVGSQALQLADFGTWGSRQFGIGPQFSLPLFDGGRLRGMLQLREAQQQEAALAYQQTVLRAWHEIDDQLTRYNASQLRRDSLAEAVRQNQIALRTAQQQYVEGVVDFVNVLTVQGALLATQEQWVESSAAVSLAMVGLYKALGGGWESVYPLQVASQRH
>NZ_AP014627.1|WP_060836927.1|164977_165487_+|sigma-70-family-RNA-polymerase-sigma-factor
MPATTDGNTQLHRLYQDHHGWLQGWLRKRLGDREHAADVAQDTFLRLLLSGRFPGQQESRSYLAQIARNLVIDQWRRARIERAYLDSIAHLPEPQTPSLESRALILETLMQIDTMLDRMPDKVRQAFVMSQFEGLGYAQIAERLEVSVSSVQKYMTRAIQACYQVLYAE
>NZ_AP014627.1|WP_060836928.1|165483_166437_+|FecR-domain-containing-protein
MKPHQAPIAPSVVEQASEWLMLHWGGELSPQQRAAFEAWQQADPEHLRAWQRLQHLQQTLQGVPEQGAHVLLAKAPDLQRRAALKLLGLLLVAGGSGYLLQGSQPWRATFAGERSATGQVRHLTLSDGSRLDLNSASAVDVLFTASERRIRLIQGEILLTSGHDSSRPLIVETAAGDIQALGTRFAVCELGGGTRVDLYQGALRVSPRQAQALYLNAGERLWFSADRVAPRQVAEVNASSWSEGRLIAERQPLGQFISELARYRPGVLRCDEQVAGLLLTGVFPLADSDAVLAALEHALPVRAHAVTRYWVTLKPRE
>NZ_AP014627.1|WP_060836929.1|166530_168996_+|TonB-dependent-siderophore-receptor
MPYPTTASILTLGTSARRHALVALLAMAPVCPGIAQAAGDSHHQARDYQIAAGSLDQVLNRFAGAAGILLSVDASLTAGKHSAGLQGRYEVAQGLQTLLAGSGLQAVQRGGSWGLQPLPQDGALQLAPTRIGVTQVDEHAWGAVPGIVAKRSATGSKTDSALVEIPQTINVIGAKEIKARGAQSVTEALLYTPGMTGGGFSDRVKIFDEPTSRGFSPTPMYLDGLHLPYGGGSTGGALQIEPYALERIEVLKGPASVLYGQNQPGGIVNMVSKRPTETPLHQLVLEAGSYDHKSIALDLGGPLDEQGQFLYRLTGLASDSQDAIDYVQRQRQFIAPSLTWRPDDDTQLTLFAQFQKDNDVPEAQGLPSVGTVFANPNGKIDRDLFLGEPGVNAYDRDQFVLGYELSHRLNDVWTLKQNARYADVDDRYRAPLHGYKFVSNPKTGLDDQRYMSRYGVDWKQHNKVYGVDSIAQAEFDTGPFSHTLLVGLDYYHFNSKFDGKYDFNPPILDMFTPTYGQSLNFGNPYQWDNTIIQTGLYVQDQIKYEQWVLVLGGRNDWAETDNKTPLNGGHTNAKSQSFTGRGGLVYLFDNGLAPFVSYSESFLPLSGTSVGGSAFKPSSGKQYEVGMKYQPPGQESFVQVSAYQLDQENILTSDLANPGFSIQSGAVRSRGIELEAKASLSESLDVIASASRNDIKYTKDNDGREGRHPAGMPPLTASLWLNYTILGDTPLAGLGAGVGTRYVKGSYGTDYDGAFQIPSYTVYDASLSYDLEKSPLQWKGVKLALNVKNLTDKTYVANCTSIWDCYYGEGRTMVSSLTYDW
>NZ_AP014627.1|WP_060836930.1|169014_169704_-|NYN-domain-containing-protein
MRTAFFVDGYNLFYGLLADTPFKWLDLPGLLTHIVQIENPASRLVSVDYFTSSVKPRLATRGRASKEAQDTYLRALKARQVNVHLGRHQLEPAKAPRFIDKAVGASRQDTVDIWKLEEKETDVHLAISMYRLAARQLLHPPGERIEQLVLVSGDTDMTPALRAIREDFPDVTLGVILPHRPQYPRPQPGSLKAQAHWMRRVVTAEELQKHQFPERVATRKAPAIRPDYW
>NZ_AP014627.1|WP_173655921.1|169966_170701_-|DUF3142-domain-containing-protein
MKSLGYGLLPLWLWWATPAAGAAPVQAADHDAFWLWSGVKTQPVLARAKTLYILQGQISRSRRHPASGVQLIAQGLPVSRLPQEQVWVVYRAHTLAWTEPVYRQLFGQLQRWQATGSPVVGIQIDFDSSTRDLERYGNFLRDLRQRLPAHYRLSITGLMDWGSNADPQAIGQLKGVVDEVVVQTYQGRRSIPNYASYLPRLDRMGLPYKVGLIQGGDWQEPQALRDSPWFRGYVVFLQNPQPEP
>NZ_AP014627.1|WP_060836932.1|170703_172896_-|hypothetical-protein
MRKLLLSSLTLAALCAGQAQASSDDTCSPTWKLYANQLDGCSNLPFLSPGNDSRVNLRLLLADQGSLPLTPRALTQDELGMGYGPVPFMHYRLYPAAPELDPDTGNPPKPGPSPATEQLDSLLEAVGLRRDSKETAGDGFLSGEGSRCRSNSDASALAFVEQLNQAPLSPEERQALAEARVQLLASCSWNASEMSKLLPGNLNSAAAKAFASYLQAAADFYSGRFSEAGNGFAALKDNPQPWLAETAAYMSPRTTLNLAQQNAFDEWSMVNLEHVDKAVLQQAGAGFEAYLKAYPQGRYAVSAKGLIRRVHWLTGDTPALADDYAWQLTQAPGTPRNMRLDDLVEEVDYKLLSLPEDNFKAPLLLAVKDLMHMRGATPAVLTRDTLQQQKALFEGQPALFDYLQAAFSLYVEQQPATALKQLPSQLPAHLDYLSFSQQTLRGLAMQAQQDWKGAEALWLQLLPLAQQPLQREQLELALAYTYERSGQLDKVFAADSPIKTAQVRAILLRQVASPKLLRQQAQKADSAEERNAARFILLYKDLTRGQYAAFGQDYEQLPPTLPDASLPASLGYIYLSTTPLQDFHWNGAQPEAQTPDYRCPSLVETAALLQRDPKAPAGLICLGEFMRFSGFDRMPLDTPPPAQNLGGTPDAFPGKPFSRLDGYQVVINNPKASRDDRAYALYRAINCYASSGHNNCGGAGVEPAVRKAWFRQLKTKLGDTQWSQSLRYYW
>NZ_AP014627.1|WP_060836933.1|173227_174838_+|glycosyltransferase-family-39-protein
MDFRRAPELIGRLQEQAVVPQEQGVQRLMRRVLEYWLLPVLLLAAAVRFYDLTAAAIWGDEGSSLVLSQYSLSDIWVHAARDVHPPLYFMLLRGWIELFGDGIFSIRTFSALPGIVTVGLGVWLVALLATRRAAILAGVLLALLPTAVRYSQEVRMYALLGLLLLGATLALVYWLRQPSRRGYLVSYALLMTLAFYTHYFTAFCVLAHWLYLALSGVRGEGDRRLIVRPAWWLANAAIVLLYLPWVPELLDLLRHMDELKANGDVGWEPPVTWTSLPAMVWQLLIQDEGDNLPGALFVGMPLLLLALCSVPAWRKWAPVRFGGLLASFTLLPLLLVFAVSFASPVFIERYLTAYALGVPMIIAVLVDRWLKSARLVALALLVGFVGLEAVGLKNNIDVDANDQVSVMVDYVNRHYVAGDRIVISDMLWYLSYLYYNRTDAQPMLYTPPLPGGASSRPNAYGFGTLIDQPDQVYLDQLSRLPVGSGRYWLVGSDDPAEEFAPLPPGWRKVSQFAAGGTRARLFVLCGPATGVPCTGQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_AP014627_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014627_2

2445144-2445238

Orphan

Consensus_repeat	Method
ACTCGCTGTAAGAGCGAAACCCTAAGTGGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014627_2

>merge|NZ_AP014627|2|2445144-2445238|CRISPRCasFinder
ACTCGCTGTAAGAGCGAAACCCTAAGTGGCCGTGACCGCAGCAACGGATATGTACCCCGTCCCACTCGCTGTAAGAGCGAAACCCTAAGTAGCCG

>NZ_AP014627|2|2|2445144-2445238|CRISPRCasFinder
ACTCGCTGTAAGAGCGAAACCCTAAGTGGCCG	TGACCGCAGCAACGGATATGTACCCCGTCCC
ACTCGCTGTAAGAGCGAAACCCTAAGTAGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014627.1\|WP_060838557.1\|2433652_2434405_-\|(2Fe-2S)-ferredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239278
NZ_AP014627.1\|WP_060838572.1\|2451920_2452637_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223477
NZ_AP014627.1\|WP_060838569.1\|2449333_2450113_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270421
NZ_AP014627.1\|WP_060838561.1\|2439023_2440373_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_AP014627.1\|WP_060838559.1\|2436748_2437789_-\|arginine-N-succinyltransferase	unknown	unknown	gnl\|CDD\|377426
NZ_AP014627.1\|WP_060838567.1\|2447549_2448113_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_AP014627.1\|WP_060838573.1\|2452650_2453229_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183232
NZ_AP014627.1\|WP_060838571.1\|2451459_2451849_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227326
NZ_AP014627.1\|WP_060838570.1\|2450229_2451342_+\|succinylglutamate-desuccinylase/aspartoacylase-family-protein	unknown	unknown	gnl\|CDD\|349468
NZ_AP014627.1\|WP_060838560.1\|2437838_2438855_-\|arginine-N-succinyltransferase	unknown	unknown	gnl\|CDD\|377426
NZ_AP014627.1\|WP_060838568.1\|2448194_2448956_+\|precorrin-6A-synthase-(deacetylating)	unknown	unknown	gnl\|CDD\|236218
NZ_AP014627.1\|WP_060838562.1\|2440557_2441310_-\|N-formylglutamate-amidohydrolase	unknown	unknown	gnl\|CDD\|226441
NZ_AP014627.1\|WP_060838566.1\|2445357_2447337_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_AP014627.1\|WP_060838563.1\|2441293_2442649_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_AP014627.1\|WP_082729843.1\|2434416_2436393_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_AP014627.1\|WP_060838556.1\|2432736_2433660_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238568
NZ_AP014627.1\|WP_060838575.1\|2455229_2456144_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|183277
NZ_AP014627.1\|WP_060838565.1\|2443292_2444147_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_AP014627.1\|WP_060838574.1\|2453398_2455201_-\|cobalamin-B12-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|223963
NZ_AP014627.1\|WP_060838564.1\|2442645_2443290_-\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238245

Protein	Function_ID	Function_description	E-value
NZ_AP014627.1\|WP_060838557.1\|2433652_2434405_-\|(2Fe-2S)-ferredoxin-domain-containing-protein	gnl\|CDD\|239278	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.	2.52927e-16
NZ_AP014627.1\|WP_060838572.1\|2451920_2452637_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	8.89666e-39
NZ_AP014627.1\|WP_060838569.1\|2449333_2450113_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270421	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold. This subgroup includes the periplasmic-binding proteins, HisJ and LAO, that serve as initial receptors in the ABC transport of histidine and lysine-arginine-ornithine amino acids. They are belong to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.02412e-134
NZ_AP014627.1\|WP_060838561.1\|2439023_2440373_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	5.16725e-43
NZ_AP014627.1\|WP_060838559.1\|2436748_2437789_-\|arginine-N-succinyltransferase	gnl\|CDD\|377426	pfam04958, AstA, Arginine N-succinyltransferase beta subunit. Arginine N-succinyltransferase EC:2.3.1.109 catalyzes the transfer of succinyl-CoA to arginine to produce succinyl-arginine. This is the first step in arginine catabolism by the arginine succinyltransferase pathway.	7.63315e-158
NZ_AP014627.1\|WP_060838567.1\|2447549_2448113_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.42665e-28
NZ_AP014627.1\|WP_060838573.1\|2452650_2453229_-\|hypothetical-protein	gnl\|CDD\|183232	PRK11615, PRK11615, hypothetical protein; Provisional.	1.87802e-09
NZ_AP014627.1\|WP_060838571.1\|2451459_2451849_+\|hypothetical-protein	gnl\|CDD\|227326	COG4993, Gcd, Glucose dehydrogenase [Carbohydrate transport and metabolism].	0.0060918
NZ_AP014627.1\|WP_060838570.1\|2450229_2451342_+\|succinylglutamate-desuccinylase/aspartoacylase-family-protein	gnl\|CDD\|349468	cd06250, M14_PaAOTO_like, Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like subfamily; subgroup includes Pseudomonas aeruginosa AotO. An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding P. aeruginosa AotO was characterized as part of an operon encoding an arginine and ornithine transport system, however it is not essential for arginine and ornithine uptake.	8.97807e-120
NZ_AP014627.1\|WP_060838560.1\|2437838_2438855_-\|arginine-N-succinyltransferase	gnl\|CDD\|377426	pfam04958, AstA, Arginine N-succinyltransferase beta subunit. Arginine N-succinyltransferase EC:2.3.1.109 catalyzes the transfer of succinyl-CoA to arginine to produce succinyl-arginine. This is the first step in arginine catabolism by the arginine succinyltransferase pathway.	2.79478e-131
NZ_AP014627.1\|WP_060838568.1\|2448194_2448956_+\|precorrin-6A-synthase-(deacetylating)	gnl\|CDD\|236218	PRK08284, PRK08284, precorrin 6A synthase; Provisional.	2.27285e-150
NZ_AP014627.1\|WP_060838562.1\|2440557_2441310_-\|N-formylglutamate-amidohydrolase	gnl\|CDD\|226441	COG3931, COG3931, Predicted N-formylglutamate amidohydrolase [Amino acid transport and metabolism].	7.74786e-88
NZ_AP014627.1\|WP_060838566.1\|2445357_2447337_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.83211e-65
NZ_AP014627.1\|WP_060838563.1\|2441293_2442649_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	3.51759e-103
NZ_AP014627.1\|WP_082729843.1\|2434416_2436393_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	3.1096e-55
NZ_AP014627.1\|WP_060838556.1\|2432736_2433660_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238568	cd01148, TroA_a, Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	1.40566e-49
NZ_AP014627.1\|WP_060838575.1\|2455229_2456144_-\|DMT-family-transporter	gnl\|CDD\|183277	PRK11689, PRK11689, aromatic amino acid efflux DMT transporter YddG.	6.86587e-17
NZ_AP014627.1\|WP_060838565.1\|2443292_2444147_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.16559e-57
NZ_AP014627.1\|WP_060838574.1\|2453398_2455201_-\|cobalamin-B12-binding-domain-containing-protein	gnl\|CDD\|223963	COG1032, COG1032, Fe-S oxidoreductase [Energy production and conversion].	1.09009e-19
NZ_AP014627.1\|WP_060838564.1\|2442645_2443290_-\|cysteine-hydrolase	gnl\|CDD\|238245	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.	1.45501e-45

>NZ_AP014627.1|WP_060838565.1|2443292_2444147_-|MurR/RpiR-family-transcriptional-regulator
MPSLKDLITDSALDLTPAERKVVRALLDHYPRNGLGPMSRLAEHAGVSDPTIVRLVKKLGFSGYGEFQEALLSDMDDRLRSPSTLLRPRAQVAQGDTWGRYLADSQRALQDTQALTQPEDVRVLVDWLQDSRHAVYCFGGRFSSFLAHYLLNHLRLMRPGCLLLEDNAQLPDRLFDIQRQDLVLLFDYRRYQSQALRVASAAKARHARVVLFTDIYASPLRELADLIISAPVESLSPFDTLVPALAQVEALIACLTPRSAHLDQRLEGIDALRAQFDTHVLEEK
>NZ_AP014627.1|WP_060838564.1|2442645_2443290_-|cysteine-hydrolase
MFSLPHRSPRDLPFVVDHTALLLVDMQRAWLEPQFDPHLQEPEGQAFLQRARQQVIPNQQRLLAAVREARQNVLHTLIESLTADGRDRSLDHKLSNMHLPKGSPQAAIIDELTPVENEIVLPKTSSGVFNSTNIDYVLRNLETRHLIVAGIVTDQCVDMAVRDAADRGYLVTLVEDACATYSDARHQACLNAIKGYCWITDTDTVLGRLREIRG
>NZ_AP014627.1|WP_060838563.1|2441293_2442649_-|glutamine-synthetase
MSRGQGIEALTPVAMTSIVTTDLIGVTRGRSFPSDELERYRLGGCGWVPANSALTPQDLIAEDNPWGAYGDLRLIPDLDSRVTVGAGPDATAAPLDFIHADICETDGRPWAACPRTLLRNEVARYRELGIQITAAFEHEFNLDSGSAQREHLAFSLEAQRQGAAFGGWLLSALRAAGVEPEMFLPEYGKQQYEITCRPTQGLAAADRAVNVREITREIARQLGQRVSFAPKTAADAVCNGVHLHLSLQDLDGTPLLYDPQAVSGDDLSRLGQHWAAGVLKHLPALCAFTAPTPLSYERLQPHHWSASYACLGLRNREASLRICPTVDIGGKPLAPQYNLEFRALDATASPHLAMAVILIAGRLGIEQKLALNAVTDKVPDELSAEQRLASGIVPLPGSLPQALDYLRSNTELLQALPEPLLSTYFAVKQKEVSLTEHLTAAELCEHYGHLY
>NZ_AP014627.1|WP_060838562.1|2440557_2441310_-|N-formylglutamate-amidohydrolase
MDTCTKSAEHGFYTEPAYRLLREDSEHPLILVCEHASHYIPPPLHDLGLDKVAAREHIAWDPGALELAQSLSQALGATLIAANYSRLLIDLNRPRHAPDSIPLQSEIYQVPGNQHLDEATREYRRQQLFTPFHQRLQRIIDRRLAAGREVRVVGIHSFTPIYYSQPRSLEVGVLYGNATAYAARILEGLWTLPIKVAGNQPYEIDPLSDMTVPVHGDARGLESVLIEVRNDLLRSPEAVQCWSDRLAPLL
>NZ_AP014627.1|WP_060838561.1|2439023_2440373_-|APC-family-permease
MEIEEFGYKQELKRGLSLRDLVVYGMIFMIPIAPFGVYGYVNQEAPGMVPLAYIIGMVAMVFTALSYGAMARAFPIAGSVYSYAQRGLNPHVGFLAGWLMLLDYLLIPPLLYVYAAMALNHLYPEVPKVGFILAFLVSATFVNLRGITFTARMNILFLLAQLVVLGIFLFYAWNALHGGAGNGQLTLAPLYSPDHFHFGMLMQGVSIAVLSFLGFDAISTLAEEVKGDPGRSVGRAALITLVVMGAIFVVQTWIATDLAAGMGFKSADTAFYEIAELAAGSWLATLTGVATALAWGVAVAITSQAAVSRLLFGMARDGKLPKVLAKVHPKHNTPHISIYLVAVLSLLICYLFINSVDTLTSLVNFGALSGFMLLHITVINFYWRRQKSGQVIRHLICPVIGFVIVCAIMYNMGVDAQKLGAIWILAGLVYLFLLNKLGSAAALPDPLKP
>NZ_AP014627.1|WP_060838560.1|2437838_2438855_-|arginine-N-succinyltransferase
MLALRPVALSDLPQLLRLAGARLLGVTSLVDDETCLREKILDSLASFAKVEARQGPENYFLVLEDQDSGQLHGCSDILATAGFATPFYSLRNRPFISSSRELNIEHAVPTLSLCQDLSEQTLLRSFHVDPALAGTPQAQLTSRARLLFIAAHPWRFADSCISEIVGYSDAAGQSPFWAAVGQHFFDLPYVEAERLCALQGRGFLAELMPQYPLYIPMLPQPAQDCIGRIHPAAREACDILVDEGFAPTQYVDLFDAGPTLQARNNQLRSIIQSRVAVSYLSPQSGQGRYWLLSNDRLQGFRAIVVPLDEAPGDVVGLDHSMFQALQLTPGEPVRGVAL
>NZ_AP014627.1|WP_060838559.1|2436748_2437789_-|arginine-N-succinyltransferase
MIVRPVRVSDLQALLKLLQGSCRELNNLSTDPERLAHRLRWAQRTFANQVERADADYLFVLEDDDQQVIGVCALSGAIGLREPSYNYRLGITRGRAPELGIDKEIPTLFLCNEMTGQSLLCSLYLRHDQRQGYTGRLLSTARLLFVAEYPQLFGDKLVAELRGQLDSQGRSPFWDSLGRHFFKMDFQQANRLSSQGGKSFISELMPRQPLYTCLLSPDAQAAIGQAHHSTEQAVSILRDEGFNHQGCIDIFDGGPLIEAEVTKIRSVRESQTLPLLVGTPDAQAPMWLIHNRRLENCRITAAPGRLVSGCLLVDRLTAKRLQLQPGDTVRAVQAASSKRQAPSNSF
>NZ_AP014627.1|WP_082729843.1|2434416_2436393_-|TonB-dependent-receptor
MTTPDTFRVRPLATRRRTPCGALLGCLFSPLLLADDTPLTLEPQSISAPSVESTAVAEMARYGSKLEIIDRQQIERAGPSSDITRVLQMYVPGLYVAPKNGPFDYGTYSLLGGRNDDTLILLDGVRLNNRLYGGLYLDTLPANAIERIEVLKGGQSLLFGTQAVSGVINIVTRSPQTRDVSGEVNLGLDSFMGRSGDARAERIVSNGLGDLGLLAYVSHNVSDGYQPFRNSAYSPSTRDKKRGYEVTTFGAKAIQGFADDSRLELFYQYSDANLDFARPLNNKKTTNDRIQQIATATFEQRLDQRFSYFVKGHVNDWDTRYTRINSTTSGATQVINHNDYWGFTDWGLQAEGKAELDGGHVLVFGSDNQWFKGQDDVLKIDDNSAQANALYAQLRPVVAALPDWHPSIGVRHEKISGGESATVGMLTSLYDLSPHWQLRGQFGSAFKLPNAEQLFANEEDEKGNRQLKPEKSVNAELGLDYKGSLLAGDFNASGTLFQRKIDDLIALDGIDWVNGDGRIKVRGIEVDGRWQFSPQWTLSADMTRNLVQSRNGVTLSNIPGFFARSRLGFESLDRMWGVGGAIRYIGQIDSPKQIDYGHYSVVDADAYRYLDPAQQHRLSLLVENLFDRDYSTSIASNNPRVDNLGRPLTTELRYTYRF
>NZ_AP014627.1|WP_060838557.1|2433652_2434405_-|(2Fe-2S)-ferredoxin-domain-containing-protein
MHKDYQRVLFVGPGLNSGALGEAFRRELALLRGIDAGTRVIDTLDGFDSLWAAIDEPLHENGAALLVVDLEPSSDSAYLDWLRDELGRLARAHPQAPQLWVTAQALGRRGLDAALACASIDQRERHLPCDKVNAVPSDPDWSRVPPHARQVFLCTGPRCVRRGALALWKTLRRELLRLEHMETPGGVLLTRTACQFPCNLGPVLTVHPDGCWYRVADDAQVLRLVQEHLLAGAPVADLLIPSPYAGATDA
>NZ_AP014627.1|WP_060838556.1|2432736_2433660_-|ABC-transporter-substrate-binding-protein
MPRTTTIAPLLGLLLGLAGTPALATPYENCGQRWEIAAPPQRIVALNQHSADLLLALGAGPSLIGVAYLDDDAGADGHYHGIPVIARQYPSAEVLYSLKPDLVVGGFASAFPESFSSRQRLGAIGVASYLLESACAGHNEDYFGHIRHDLLTLGRLLRQDARAAQLIAEQQADLDAAAALYQGRDRPAVFYLDSEVNGLASQGRRGFVGVLLQAAGARNSFAAIDRPRLTVDSETLLSNDPDVLLLADALWSPATRKRQLLQRDPVLSRLRAVREDRLIDIPFSQLVPGIASGRSALELARRLHPAP
>NZ_AP014627.1|WP_060838566.1|2445357_2447337_-|EAL-domain-containing-protein
MHSGIWEHLSLDLALNTSLLPIILLQYVAMVGIFSTLLMLREDAQRLIQSKKVLLGSILGASNVALIALASQFMQAPMKVFLSNDMLFLAGLLGGWWGGLTCLALVALARFWIAGAELFAEALFSFSIMTLGGVLLHRWFESRNLRSLRLKDMTPVVLMRIGAAIVPIQLIDWFGSVDSAVTAQLLSLRISSTLLSLPLIILILAMLRRETRYQQAQQRLLQQALTDSTTQLPNRRALSIYLERLLQRNGHRLGQHTLLVIKIGNLKDLVAIHGHDWTDQLLVGLAQQFRDGAARHVLQAATEPSPFMFSDLSLALALPDCSIHQVEESALLATLQMTLQASLPGDGGLSPTLQFCVIDACAGGSPNITLRNISLALEDSRQPVRYLHQSLIEQAQNNERIRQQLLEWVRSNHPPLHYQPKFCLSRRTVIGAEALLRARDEKGESISPLLILEVIRHHDLLHAFEWATIETVIRDARRYIDAGLPGPLAVNVSASTLSDANFAVLLIRRLKESGLPGHRLALELTENTLLQDTRQVAHNMLLLKDHGVTLSLDDFGTGYSALSILAKYPFAEVKIDHSMISLLHYERMRTAVTIAQESARLYQATLTAEGVETQEQIDILRSIGIGCAQGYFFSPAVPLEQLIELGIECERGQGERWGQ
>NZ_AP014627.1|WP_060838567.1|2447549_2448113_+|histidine-phosphatase-family-protein
MPATRLTLICHARTAAQKQARLPLDEALDIDWQAQALSRAAAFKPGLRVLCGPEQRTRQTAALFSAAPQVQEALRDCGFGAWQGLRLAELQAREPQALQAWLEDPQCAPPGGESRVQLCRRVAQWLEQMAQQPGHWLAVTHPMVIRAAMLQVLQAPLSSFNLLDIEPLGRLDLSHAGRWRLRLDGRD
>NZ_AP014627.1|WP_060838568.1|2448194_2448956_+|precorrin-6A-synthase-(deacetylating)
MKTLLVIGIGAGNPDFITIQAIKALNRCDLVFLMDKGPSKDSLLDLRRELCQRYLTERPYRFVEAQTPERQRGDVDYPASVQALNRDKQRIFERLINEELEPGQTGAFLVWGDPGLYDSTLRILEQILASGAAQFDYQVIPGITSVQALAAQHKVPLSRIGRSLEITTGRRLAAGQAGTADSRVVMLDAEDAYCQLRNQDLDIYWGAYLGTADEILISGRLDEVADQIQRVRRQARETHGWIMDTYLLRKPEP
>NZ_AP014627.1|WP_060838569.1|2449333_2450113_+|ABC-transporter-substrate-binding-protein
MNKFALFGALALSLFSFTASADEAKPIRIGIEAGYPPFSMKTPDGKLTGFDVDLGDALCEQMKVKCTWVEQEFDGLIPALKVKKIDAILSSMTITDDRKKNVDFTIKYYHTPARFVMKAGTAIKDPLTELKGKKVGVLRASTHDRFATEVLVPAGIDLVRYGSQQEANLDMVSGRVDALLADSVNLNDGFLKTDAGKGFAFVGPEYNDPKYFGGGAGIAVRKGDKELAEKFNSAITEIRANGKYKQVQDKYFDFDVYGE
>NZ_AP014627.1|WP_060838570.1|2450229_2451342_+|succinylglutamate-desuccinylase/aspartoacylase-family-protein
MQRIDHSLPWGHLGTQRQLSVFRFGSGTRKVYIQASLHADELPGMRTAWELKQRLAELERQGRLEGVIELVPVANPIGLDQQVQGSHLGRFELGSGKNFNRAFVELSGPVGDLIGKQLGSDASANIALIRGAMLQVLDELPPPASQLEALHRLLLRHACDADITLDLHCDFEAAIHLYALPQHWPQWQSLAARLKAGVALLCEDSGGSSFDESCSAPWLRLARDFPRAAIPPANLATTLELGSMGDTRVEQARANAEAILGFLAEQGLISGDWPAAPQRCCEGMPFEGTEYLFAPHHGVVSFLREAGEWVERGDALFEVVDPLHDTVSTVRAGTSGVLFALDRGRYTQPGIWLAKVAGREAIRAGKLIND
>NZ_AP014627.1|WP_060838571.1|2451459_2451849_+|hypothetical-protein
MSVSRVSQSIRLLFALCLLAATFNHLSAAMDHGLLWDYGYGVDTPLASRAFWGSLSFFDPLAALLLWLRPRWGLLLTLAIIVLDVVHNSFYVAAHGQWLETFYLSQVGFGLAVLVLLPLAWRGLALPDR
>NZ_AP014627.1|WP_060838572.1|2451920_2452637_+|alpha/beta-fold-hydrolase
MIRNLALLLALAAPLAHAEPTLRDDLPLRYLEQAPADTRNQPLVIFLHGYGSNEADLFGLHERLPTTYTYLSARAPQTLEQGSYQWFQRKGQGAYDGVTEELAGSAELIGQFVRGAVAKYHTQPDKVVLVGFSQGAVMAYEVGLRHPQSVRGIAALSGKILPLLAGQVKDSPDLQRLGIFIGHGTDDRRLPYSDGEQANRLLRGASLQPQFHAYPGLGHSISEAEIEDLKAWLQGLNP
>NZ_AP014627.1|WP_060838573.1|2452650_2453229_-|hypothetical-protein
MSSFARKALVLVFAAVAGFGALNALAAGKSTAKQAPGEKVSMLGGKLAFTLPKGFSASALPAGSEADGTAGASGTLYSNATTRTVVIAAQNNIPNAAQVKDNDSAFLDAAVSSFLSQQAAALPDFSKQSEKSMTLKGLGVRQIDSTATQGGGQTLNSTLIAGSGSRMAVVQVISRAADKAGHAALMKQILGQ
>NZ_AP014627.1|WP_060838574.1|2453398_2455201_-|cobalamin-B12-binding-domain-containing-protein
MHLIASQGAERLDRTGPFFSVAPTRATLQHLGLPSRTTSHSATRRRSHGEAPRVLLFVPPYTRLVEPAPKDSAFTQIGIDTFEVMKRAGTPIGLLRIATVARRAGYDVQIIDAPFAGWEQESPLVQVDQGHLLRYGLSDEQMRTIIETAQPDIVGIQCNYTVQWGNARALADLVKSIDPNLVLVTGGAHSSGDWQNALLDSAFDFVLINEADRAFTLLLDALSHGGADIHAVPGVAYRGQQGQLVRPSRKSNYLSIVPSRQGLEERLGVMPLPDFSFLNMNHYLQPYHSSGARVHKHGAWAQIFSTIGCNVNCNFCYIPKINGPWRALGLDWFDLHLADLVNQGVTEVLIEDDHLMHDPLYAMEVGRLLKKHNLPWVEEGGLSLFNLVLLHKGERFLAELDDQELKNPQYRNVIAAIKGGLTARQFIRSIAENGCYNIYLAVESANEESLINSNKSRFNAIQQATFELIEIFTEHGIQVTGGFMLGFVNPPATAGAKPFIESLELIERTTDYAVSLMGAGMAYANPFIVTPIPGTAMWEYQQQYVVRHYDNGWSHEKATMATELWSAEDIEKARLELLVRANGADRVKEMVRRGTWPVDT
>NZ_AP014627.1|WP_060838575.1|2455229_2456144_-|DMT-family-transporter
MTQATTPTKTLSASRSAASATAIGVIAVFLWSCLALLTTLTSGIPPFELLALSFAVAFLASLFILGLRGAEGFQGWRQPWKVWATGFLGIFGYHALYFFALKAAPPAEASLIAYLWPLLIVLLAGVSGGQRLRPRQLLGALLGLAGTAFIMQQRSQSGVASMPIAGYAAALLCALVWSGYSVINRRFSNVPSSIIGAICGLVAVAGALCHLAFETTVQPDYGQWAAIIGLGLGPVGLAFFAWDHATKHGNLASLGALSYLAPLFSTLLLILVGQTHANPILLIPALLIIAGAVIATSRRRTSGA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_AP014627_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014627_3

2715952-2716043

Orphan

Consensus_repeat	Method
CGTAGGAGCTGGCTTGCCAGCGAAGCGGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014627_3

>merge|NZ_AP014627|3|2715952-2716043|CRISPRCasFinder
CGTAGGAGCTGGCTTGCCAGCGAAGCGGCCCCTACATCGGGTGCAACTGTTACCGCTATTGCGTAGGAGCTGGCTTGCCAGCGAAGAGGCCC

>NZ_AP014627|3|3|2715952-2716043|CRISPRCasFinder
CGTAGGAGCTGGCTTGCCAGCGAAGCGGCCC	CTACATCGGGTGCAACTGTTACCGCTATTG
CGTAGGAGCTGGCTTGCCAGCGAAGAGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014627.1\|WP_060838796.1\|2704632_2706483_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|224490
NZ_AP014627.1\|WP_060838803.1\|2717897_2718791_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_AP014627.1\|WP_060838807.1\|2720968_2722378_-\|sensor-histidine-kinase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|182388
NZ_AP014627.1\|WP_060838805.1\|2719851_2720271_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014627.1\|WP_129405577.1\|2712425_2713028_+\|SUKH-3-domain-containing-protein	unknown	unknown	gnl\|CDD\|379608
NZ_AP014627.1\|WP_041117563.1\|2706641_2706971_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014627.1\|WP_060838808.1\|2722374_2723037_-\|response-regulator	unknown	unknown	gnl\|CDD\|182612
NZ_AP014627.1\|WP_060838800.1\|2713182_2713932_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226728
NZ_AP014627.1\|WP_060838797.1\|2707540_2709901_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_AP014627.1\|WP_060838811.1\|2724496_2725171_-\|iron-containing-redox-enzyme-family-protein	unknown	unknown	gnl\|CDD\|379634
NZ_AP014627.1\|WP_060838795.1\|2704022_2704601_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|225765
NZ_AP014627.1\|WP_060838802.1\|2716117_2717764_-\|GMC-family-oxidoreductase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|235000
NZ_AP014627.1\|WP_060838799.1\|2710856_2712296_+\|M10-family-metallopeptidase	unknown	unknown	gnl\|CDD\|369942
NZ_AP014627.1\|WP_060838809.1\|2723059_2723704_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|131573
NZ_AP014627.1\|WP_060838806.1\|2720565_2720940_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014627.1\|WP_060838810.1\|2723700_2724510_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|236372
NZ_AP014627.1\|WP_060838804.1\|2718797_2719733_-\|phytanoyl-CoA-dioxygenase-family-protein	unknown	unknown	unknown
NZ_AP014627.1\|WP_060838801.1\|2714218_2715841_-\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_AP014627.1\|WP_016968706.1\|2710278_2710575_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014627.1\|WP_060838798.1\|2709907_2710237_-\|DHCW-motif-cupin-fold-protein	unknown	unknown	gnl\|CDD\|380395

Protein	Function_ID	Function_description	E-value
NZ_AP014627.1\|WP_060838796.1\|2704632_2706483_+\|amidohydrolase	gnl\|CDD\|224490	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only].	0
NZ_AP014627.1\|WP_060838803.1\|2717897_2718791_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.632e-37
NZ_AP014627.1\|WP_060838807.1\|2720968_2722378_-\|sensor-histidine-kinase-N-terminal-domain-containing-protein	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	1.9469e-61
NZ_AP014627.1\|WP_060838809.1\|2723059_2723704_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|131573	TIGR02521, Uncharacterized_protein_HI_0366, type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.	1.38827e-06
NZ_AP014627.1\|WP_129405577.1\|2712425_2713028_+\|SUKH-3-domain-containing-protein	gnl\|CDD\|379608	pfam14433, SUKH-3, SUKH-3 immunity protein. This family belongs to the SUKH superfamily and functions as immunity proteins in bacterial toxin systems.	1.63911e-12
NZ_AP014627.1\|WP_060838800.1\|2713182_2713932_-\|hypothetical-protein	gnl\|CDD\|226728	COG4278, COG4278, Uncharacterized conserved protein [Function unknown].	4.16746e-48
NZ_AP014627.1\|WP_060838808.1\|2722374_2723037_-\|response-regulator	gnl\|CDD\|182612	PRK10643, PRK10643, two-component system response regulator PmrA.	4.44038e-84
NZ_AP014627.1\|WP_060838797.1\|2707540_2709901_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_AP014627.1\|WP_060838795.1\|2704022_2704601_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|225765	COG3224, COG3224, Uncharacterized protein conserved in bacteria [Function unknown].	2.65335e-39
NZ_AP014627.1\|WP_060838802.1\|2716117_2717764_-\|GMC-family-oxidoreductase-N-terminal-domain-containing-protein	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0
NZ_AP014627.1\|WP_060838799.1\|2710856_2712296_+\|M10-family-metallopeptidase	gnl\|CDD\|369942	pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal. Serralysins are peptidases related to mammalian matrix metallopeptidases (MMPs). The peptidase unit is found at the N terminal while this domain at the C terminal forms a corkscrew and is thought to be important for secretion of the protein through the bacterial cell wall. This domain contains the calcium ion binding domain pfam00353.	8.00923e-119
NZ_AP014627.1\|WP_060838811.1\|2724496_2725171_-\|iron-containing-redox-enzyme-family-protein	gnl\|CDD\|379634	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme. The CADD, Chlamydia protein associating with death domains, crystal structure reveals a dimer of seven-helical bundles. Each bundle contains a di-iron centre adjacent to an internal cavity that forms an active site similar to that of methane mono-oxygenase hydrolase.	2.3956e-22
NZ_AP014627.1\|WP_060838810.1\|2723700_2724510_-\|SDR-family-oxidoreductase	gnl\|CDD\|236372	PRK09072, PRK09072, SDR family oxidoreductase.	2.1495e-144
NZ_AP014627.1\|WP_060838801.1\|2714218_2715841_-\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.94585e-123
NZ_AP014627.1\|WP_060838798.1\|2709907_2710237_-\|DHCW-motif-cupin-fold-protein	gnl\|CDD\|380395	cd06990, cupin_DUF861, domain of unknown function DUF 861, cupin domain. This family contains proteins which seem to be specific to bacteria and some fungi. The function of this family is unknown but contains a cupin domain without a metal binding site. Cupins are a functionally diverse superfamily originally discovered based on the highly conserved motif found in germin and germin-like proteins. This conserved motif forms a beta-barrel fold found in all of the cupins, giving rise to the name cupin (cupa is the Latin term for small barrel).	0.00704188

>NZ_AP014627.1|WP_060838801.1|2714218_2715841_-|MHS-family-MFS-transporter
MSEHVQPLNPTLQDTTAQGGQKVIFASSLGTVFEWYDFFLYGALAAVISKQFFAGVNDTTAFIFALMAFAAGFVVRPFGALVFGRLGDMIGRKYTFLATIVLMGMATFAVGLLPNYASIGIAAPIILVALRMLQGLALGGEYGGAATYVAEHAPQGKRGLHTSWIQSTATLGLLLSLLVVLACRYFTGDQFEVWGWRLPFLLSIVLLGISTWIRMSLHESPAFLKMKEEGRASKAPIRESFGKWENLKVVLIALFSINAGQAVTFYAAQFYVLFFLTQFLKMDPALANSLLIISVVIGAPMFIFFGWLSDKVGRKPVLMLGLLLATLLYFPIFKALAHYANPAIDQASRQAPISVSADPATCTFQFDPVGKARFDSPCDKVKTFLVKQGLPYSSVAAPAGSPVQVSVGEVKIDGFDEAALRGAVTLAGYPQQADTQNVNKPMVVVLIVALILIAAMCYGPLAALMVELFPTRIRYTSMSLPYHIGNGWFGGFLPTVSFALVVYTGDIFYGLWYPVLITGVSLVVGLLCLRETRDVDINHG
>NZ_AP014627.1|WP_060838800.1|2713182_2713932_-|hypothetical-protein
MLLIFPTVLALALILMLWRRQNALQALRREAHIRNFTLPPRLFEPLRTQHPHLSLKDCQLVAQGLRQFFLAYLKGGQHYVSMPSQVVDDLWHEFILHTRDYQQFCDKAFGQFLHHTPAAVLGQNAARKSDNGLRRVWRLACLEENINPAQPSRLPLLFALDAKLKIARGFHYVADCQSLRRLTDNATTAAVVHCGSELYSSSFDSDSSSSGSDSDGSRFGGDGDSGGSDGGGGDSSGCGGGGCGGGGGD
>NZ_AP014627.1|WP_129405577.1|2712425_2713028_+|SUKH-3-domain-containing-protein
MTRRAADSLPAGAVYRAFAVFLHFDYLRRMNLLTPNIEPFFRDAGWAPGRAVVVDSHVPRAHPAFRILQAFGELTVGHTGAGAECASSDIEFGCPACPDEQVHGWQEALHTHFVCLGDVHHGHAQLWLDSQGRLFSNGLVAPIMLFVGHDFAQGVEALLKGYRLRPMLLPSQEEVMVWGERFRTGDPLVLTPGFFHARAL
>NZ_AP014627.1|WP_060838799.1|2710856_2712296_+|M10-family-metallopeptidase
MSKTLSQINENAIIPGAAASSAYLQVQTFSHLYDRGGSALVNGKPSFTADQAADSILRKGLSWHDQNGDGKIDLTYSFLTEKPANYNPALGSFSEFSALQKAQALLSLQSWSDVANVTFSEAAKGGDGHMTFGNYNVSTGGAAFAYLPSGGSYDGQSWYLINDQYRVNETPGNGNYGRQTLTHEIGHTLGLSHPGVYNAGNGNPTYNDVTYAQDTRGYSLMSYWSEGNTGQNFSKDGSGAYASAPLLDDIVAVQKLYGANLETRADDTVYGFNSNTGRDFYSAHSNADKLVFAVWDGGGNDTLDFSGFSQNQKINLNQGGFSDVGGLVGNVSIAHGVTVENAIGGSGNDLLIGNAAANILEGGAGNDILYGGGGGDTLWGGAGADTFVFGAASDSTFDAPDWIMDFASGEDKIDLSGLFASTGATLNFVSGFTGHAGDAILTYFAETNQTSLMIDLTGHGAVDFAVGTVGQAAVTDIIA
>NZ_AP014627.1|WP_016968706.1|2710278_2710575_-|hypothetical-protein
MRKILLLGTLMIFAGAAHAEGIPLFNVSCPGNLAVSADQGGPIYINGKAVKNSAVDDRHFQVKTAEITLAISVEDDDSVTVKYTDKHGASGLCEAVDD
>NZ_AP014627.1|WP_060838798.1|2709907_2710237_-|DHCW-motif-cupin-fold-protein
MHISALPFATTDWSTIEPTEHRGETGSAFWRTRQFGAIRVRMVEYTPGYLADHWCSKGHILLCLEGELHTELEDGRRFVLTPGMSYQVADNAEPHRSSTARGAKLFVVD
>NZ_AP014627.1|WP_060838797.1|2707540_2709901_+|DNA-polymerase-II
MDVQQGFVLTRHWRDTPSGTEVELWLATDQGPRRLRLPLQTSVAFIPAVQRPQAERLLADDPDVELRPLQLRDFHQRPVLGLYCPQHNQLMRLDKTLRRAGVEVFEADVRPPERYLMERFITAPVSFGGLPGPDGLLLEAQMKPAPDYRPTLKLVSLDIETSERGELYSIALEGCGQRQVYMLGKAREDDSAVDFDLEFCASREQLLEKLNQWLAEHDPDAIIGWNLVQFDLRVLHEHARRLAVPLRLGRGGEEMQWREHGSRTHYFASAAGRLIIDGIEALRSATWSFPSFSLENVAQTLLGEGKSIDNPYQRMDEINRMFAEDKPALARYNLKDCELVTRIFAKTELLTFLLERATVTGLPADRSGGSVAAFTHLYMPLMHRQGFVAPNLGELPPQASPGGFVMDSRPGFYESVLVLDYKSLYPSIIRSFLIDPVGLVEGLRQPDEQHSVAGFRGARFSRTRHCLPSIVTRVAEGREVAKREHNAPLSQALKIIMNAFYGVLGSSGCRFFDPRLASSITLRGHEIMARTRQLIEAQGHQVIYGDTDSTFVWLGSLHDEEQAASIGRALVAHVNQWWREHLQQEYGLESALELQFETHYKRFLMPTIRGAEEGSKKRYAGLVQRADGRQEMVYKGLETVRTDWSPLAREFQQELYRRIFHRQPYQDYVRDYVHRTLAGQLDDLLIYRKRLRRPLDDYERNVPPHVRAARLADDYNREQGRPLQYQNGGWISYVITLAGPEPLENRRAAIDYEHYLTRQLQPVADAILPFVQDDFSTLVGGQMGLF
>NZ_AP014627.1|WP_041117563.1|2706641_2706971_-|hypothetical-protein
MNLNNQPTIDELARMFAAQKDSHDSHILWIAKSGQVHIDCLSPHSHEAEFDQNNRELAARLKMYRRGQGYVGKKAAADKDFIGRVLETLKAEWQSLRDKSEVRVIDRFC
>NZ_AP014627.1|WP_060838796.1|2704632_2706483_+|amidohydrolase
MKPDAIADLILFNGRLHTVDRARPRASAVAIKDGRFIAVGNDAQAMALRGAGTQVIDLMGRTVIPGLNDSHLHLIRGGLNYNLELRWEGVPSLADALRLLKEQALRTPAPQWVRVVGGWNEFQFAEKRMPTLEELNQAAPDTPVFVLHLYDRALLNRAALRVVGYDRNTPNPPGGEIVRDGNGNPTGMLIARPNAMILYATLAKGPKLPLEYQVNSTRQFMRELNRLGVTSAIDAGGGFQNYPDDYQVINQLAAEQQLTVRIAYNLFTQKPKEELADFKHWTSSVTYGQGDDFLRHNGAGEMLVFSAADFEDFLEPRPDLPQTMEQELEPVVRHLVEQRWPFRLHATYDESISRMLDVFEKVDRDIPFNGLPWFFDHAETISPKNIERVRALGGGIAIQDRMAFQGEYFVERYGAKAAEMTPPIQRMLAEGIPVGAGTDATRVSSYNPWTSLYWMVSGRTVGGLELYPQGLSRDTALELYTHGSAWFSSEQGKKGQIKVGQLADLVALSADYFSVEEEAIKWIESLLTVVDGKVVHAAGDFAKLAPPSLPVTPDWSPVAKVPGHWKPNAPLQNQVHQCSGPCAVHAHGHQKARMSNVPVSDFQGFWGAFGCSCFAF
>NZ_AP014627.1|WP_060838795.1|2704022_2704601_+|antibiotic-biosynthesis-monooxygenase
MNIELTDGVVTLLVRHRIKQGQEQAYETWLRQIIAKARSYPGHLGIDVVRGHSGGLGLFTSVLRFASTEQLQNWLDSADRRELVEQAQHLLADGDQTEINADREFWFTPQDSAAPTPPPRWKQACVTFLVILPLSFLVPQLWKPVFALLPWLGGYVPATVLITLSIVLLVVYVFMPRVTRLFRRWLQPRSAA
>NZ_AP014627.1|WP_060838802.1|2716117_2717764_-|GMC-family-oxidoreductase-N-terminal-domain-containing-protein
MLPAFDAYDYIVVGAGPAGCLLANRLSANPQHRVLLLEAGGRDNYPWIHIPVGYLFCIGNPRTDWCFKTEAEPGLQGRSLSYPRGKVLGGCSSINGMIYMRGQAADYDGWAAAGNPGWSWQDVLPLFKKSENHFAGGSELHGAAGEWRVERQRLSWPILDAFRTAAQQSGIGNIDDFNGGDNEGCGYFQVNQKAGVRWNAAKAFLKPIAQRPNLVVLTGVEVQRLILEDGRATAVHASCQGRLEQFKARREIILCAGAIGSPSILQRSGIGPAPLLQRLGVGVSHALPGVGENLQDHLQLRLIYQLENARTLNQIAGSLWGKMGMGLRYLYDRSGPLSMAPSQLGAFARSAPEQTRANLEYHVQPLSLERFGEPLHSFPAFTASVCDLRPQSRGRVEIRSVDAGAAPLIQPNYLSHPEDLRIAADAIRLTRRIVGAPALQPFKPCEYLPGPQLQTEEQLHEAAARIGTTIFHPVGTCRMGSDAHAVVDAQLRVHGIPGLRIADASIMPRITSGNTCSPTLMIAEKAAELILASVPRSTVQHKQPATPA
>NZ_AP014627.1|WP_060838803.1|2717897_2718791_+|LysR-family-transcriptional-regulator
MFDWNDLRYFLELQRSGRLLTAARRLNTTHATVARHIEAVEKALGTALFVQHAQGYELTPAGEALLKHAEAMENVALLVQEEITQSSAPLGKIRVGVTEGLGVKFLAGRMSALFERYPGLEVELVAVPRFVSILNREAEISIHLERPSADMLVTRKLTDYRLALYASPSYLDRAPPLRSREDLGRHAWIGYVDDLLFSQELMFLNQFCRNPQVVFHSTSVIAQQEAARSGLGIAVLPCYMAAADPQLVPLLPAESIQRAYWISTRRELHKSVRLRVVWDYLMELCAAQQQVLLGPQS
>NZ_AP014627.1|WP_060838804.1|2718797_2719733_-|phytanoyl-CoA-dioxygenase-family-protein
MNLPSVLSENTPLLVNPLRLEQDDLRHFQERGFIKLRQLLTPTAIEHLGELVDSQLRPCRTSAPAHGDGFSRLTHQLGQIGILERLYRQPAFTQVLTRLTGCRLIVSEAQSFELQTGRSGFAWHYDSLNFRYIRPQDPAFSLWLPLQPIRPEQQGGGMAWVPLSRCSAQANFQFSRLLAEKLARGEAIEDFSAHLRQTYCTPGLLTDSFEQQRIEDSFDPGDALLFSKYLWHRSSPLLPGDLQRRQAVSLRLLDWRARLDPLLQEGETRSAGGLGMGREGGPLNPVSYGSRFVDIQPGAPIRSSAHCGPIL
>NZ_AP014627.1|WP_060838805.1|2719851_2720271_-|hypothetical-protein
MKRMSVLLLSLAAACSAAQATSEVDAARQSLKNYGLANCLAARFEEPSAMRQDVGHAVGMYGVLGIGLYNVLQNEDTLETLHNPYTATTDYVAQAYEQASGSSKYSRDKVVLHACLEVYNSRAFDEFIQTQDRYVRPGG
>NZ_AP014627.1|WP_060838806.1|2720565_2720940_+|hypothetical-protein
MQKIKLILGSALAVFLAYQAYGSFYYGTPYQGRNYSPDQAFYYQKYRLFSWRTWIPTMTMPGDGDSSRYSVGGYLRVFKADGTPVGQSYDGCIAVVEVSWYDDAVGGFGCSEHLIALSAKATPD
>NZ_AP014627.1|WP_060838807.1|2720968_2722378_-|sensor-histidine-kinase-N-terminal-domain-containing-protein
MNSIRQRTLTLIIGLLFAGLLILTSFNLHDSNHEIDEVYDAQLAQHARLLLGIMRMPSSIDQAQLYHAFNLALSQAMPQVDGHPYESKIAFQVWNRKGNLLVRTTSAPVLALQPLAPGFGNEQDGNHHQWRTFTLDDPDSGLRIWVGERVDVRSDLVSRIMRHTLWPNVLGSLLLAVIIWLAIGWGLRPLANMAATLRARPSGSLEPLHLEPLPRELEPMQAALNRMLTQIQELLGRERRFIADAAHELRTPLAVLRVHAQNLLQAGTEQERRASLESLILGVDRAGRLVNQLLTMARLEPKAQVPSEQLIDLAHTVRDSLVQLTPWLLNQGLELSFDVDERAYPIRAEAASIDIALNNLISNAVNFSPANGVINVRLAEVGEHFELSVEDQGPGIDESQRERLFERFYSRGNVNGAGLGLTIVSVIARHLGGRISLDNLPQGGLRATLSIPCHQPLRLGSAWTARREP
>NZ_AP014627.1|WP_060838808.1|2722374_2723037_-|response-regulator
MRLLLIEDDQPLGEGIHQALTREGYTVDWLRDGNSALHALLSETFDLALLDLGLPRLDGLQVLKRLRDSGSTLPVLILTARDATEDRIAGLDAGADDYLIKPFDLDELKARLRALLRRSAGRARVLIEHAGISLDPGTQQVHYHGEPVALTPKEYQLLYELLSPPGRVMTRDRLLQLLYGWNEEAESNTLEVHIHHLRKKFSADLIRTIRGVGYLVEERR
>NZ_AP014627.1|WP_060838809.1|2723059_2723704_-|tetratricopeptide-repeat-protein
MKTLISALLLGCLSLPAWALDAADQQRLNGIQQGWAHIQYQLPAEQRAAAFEQLATQTRAFTQERPALAEAWIWSGIVTSSWAGAQGGLGALSKAKAAKADLELALGLDPKALQGSAYTSLAALYDRVPGWPIGFGDADKAEELLRQALQQNPEGLDSLYFWGDHLYRQGRYGEARVALLKALQAPPRPGREVADQGRREEIRALLAEVGKKIR
>NZ_AP014627.1|WP_060838810.1|2723700_2724510_-|SDR-family-oxidoreductase
MRLPETRAVLTGASGGIGLAITEALCASGARVLAVARHKEPLAHLLARYPDQLCWVSAELTFLSDRRKVLLAAEAIGGVNLLINAAGINHFAMLEQLDDAEINAMLAVNIGAPMCLTRLLLPLLQQAPSAMVVNVGSTYGSIGYPGYAAYCASKFALRGFSEALRRELADTRVNVLYVAPRATRTSMNSPAAQALNDALKSNVDDPQTVANAVLHAIAGDHRELYLGWPERFFVRLNSLLPNLVDRGLRKHLPLIRRLSIRSEREHEEP
>NZ_AP014627.1|WP_060838811.1|2724496_2725171_-|iron-containing-redox-enzyme-family-protein
MSFFDQLQAATAQEREQLFNLPIIREALAGQVSLEGYRAFLVQAYYHVRHTVPLMMACGARLPERLEWLRGAVCEYIEDEYGHEQWVLNDIVACGGERLAVRDGQPCLAIELMVSFLYDLIARGNPVGLFGMVNVLEGTSIALATLAAGSIRETLQLPQSAFSYLASHGALDIEHMQTYRRLMDRLDDPSDQAAVIHASKVVYHLYSEMFRGLPRVGESAHASA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_AP014627_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014627_4

6317550-6317901

Orphan

Consensus_repeat	Method
CCCGTAGGAGCTGGCTGGCCAGCGAACAGGCCCGCAACCCGG	PILER-CR

3 spacers

The CRISPR arrays of NZ_AP014627_4

>merge|NZ_AP014627|4|6317550-6317901|PILER-CR
GTAGGAGCTGGCTGGCCAGCGAACAGGCCCGCAACCCGGGCGCCGCTCTCACAGGCGCCTTCGCCGGCAAGCCGGCTCCTACAATAGCCCGCGCACCTCTCGCCCCGTAGGAGCTGGCTGGCCAGCGAAGAGGCCCGCACCCCGGGCGCCGATCTCACGGGCGCCTTCGCCGGCAAGCCGGCTCCTACAATTGCCCGCGCACCTCTCGCCCCGTAGGAGCTGGCTGGCCAGCGAAGAGGCCCCCAAGCCGGGCGCCGATCTCACGGGCGCCTTCGCCGGCAAGCCGGCTCCTACAATAGCTAGAGCACCTCCCGCCCGTAGGAGCTGGCTGGCCAGCGAACAGGCCCGCAAG

>NZ_AP014627|4|1|6317550-6317901|PILER-CR
GTAGGAGCTGGCTGGCCAGCGAACAGGCCCGCAACCCGGGCG	CCGCTCTCACAGGCGCCTTCGCCGGCAAGCCGGCTCCTACAATAGCCCGCGCACCTCTCGCCCC
GTAGGAGCTGGCTGGCCAGCGAAGAGGCCCGCACCCCGGGCG	CCGATCTCACGGGCGCCTTCGCCGGCAAGCCGGCTCCTACAATTGCCCGCGCACCTCTCGCCCC
GTAGGAGCTGGCTGGCCAGCGAAGAGGCCCCCAAGCCGGGCG	CCGATCTCACGGGCGCCTTCGCCGGCAAGCCGGCTCCTACAATAGCTAGAGCACCTCCCGCCC
GTAGGAGCTGGCTGGCCAGCGAACAGGCCCGCAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014627.1\|WP_060841446.1\|6321811_6323107_+\|glycine-betaine-demethylase-subunit-GbcA	unknown	unknown	gnl\|CDD\|226985
NZ_AP014627.1\|WP_060841447.1\|6323303_6324569_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|224327
NZ_AP014627.1\|WP_016964293.1\|6308633_6309266_-\|sarcosine-oxidase-subunit-gamma-family-protein	unknown	unknown	gnl\|CDD\|282168
NZ_AP014627.1\|WP_060841439.1\|6312730_6313981_-\|sarcosine-oxidase-subunit-beta-family-protein	unknown	unknown	gnl\|CDD\|273585
NZ_AP014627.1\|WP_060841450.1\|6331584_6332355_-\|electron-transfer-flavoprotein-subunit-beta	unknown	unknown	gnl\|CDD\|224997
NZ_AP014627.1\|WP_060841445.1\|6320420_6321521_-\|glycine-betaine-demethylase-subunit-GbcB	unknown	unknown	gnl\|CDD\|99811
NZ_AP014627.1\|WP_060841437.1\|6307620_6308478_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|237266
NZ_AP014627.1\|WP_060841440.1\|6314004_6315258_-\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|237280
NZ_AP014627.1\|WP_047289632.1\|6306249_6307449_-\|formaldehyde-dehydrogenase,-glutathione-independent	unknown	unknown	gnl\|CDD\|274314
NZ_AP014627.1\|WP_060841441.1\|6315651_6316392_-\|conjugal-transfer-protein-TraX	unknown	unknown	gnl\|CDD\|368639
NZ_AP014627.1\|WP_060841443.1\|6318097_6319543_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|224374
NZ_AP014627.1\|WP_060841448.1\|6324616_6326485_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184704
NZ_AP014627.1\|WP_060841442.1\|6316492_6317533_+\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|224919
NZ_AP014627.1\|WP_060841451.1\|6332364_6333585_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_AP014627.1\|WP_060841444.1\|6319539_6320364_+\|carbon-nitrogen-hydrolase	unknown	unknown	gnl\|CDD\|143604
NZ_AP014627.1\|WP_047306413.1\|6305729_6306002_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014627.1\|WP_011063902.1\|6312413_6312716_-\|sarcosine-oxidase-subunit-delta	unknown	unknown	gnl\|CDD\|226761
NZ_AP014627.1\|WP_060841438.1\|6309399_6312417_-\|sarcosine-oxidase-subunit-alpha	unknown	unknown	gnl\|CDD\|273584
NZ_AP014627.1\|WP_060841449.1\|6326614_6330067_-\|GMC-family-oxidoreductase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|225186
NZ_AP014627.1\|WP_060841452.1\|6333584_6335534_-\|dimethylglycine-demethylation-protein-DgcB	unknown	unknown	gnl\|CDD\|371832

Protein	Function_ID	Function_description	E-value
NZ_AP014627.1\|WP_060841446.1\|6321811_6323107_+\|glycine-betaine-demethylase-subunit-GbcA	gnl\|CDD\|226985	COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only].	2.64178e-101
NZ_AP014627.1\|WP_060841447.1\|6323303_6324569_-\|metallophosphoesterase	gnl\|CDD\|224327	COG1409, Icc, Predicted phosphohydrolases [General function prediction only].	9.55205e-05
NZ_AP014627.1\|WP_016964293.1\|6308633_6309266_-\|sarcosine-oxidase-subunit-gamma-family-protein	gnl\|CDD\|282168	pfam04268, SoxG, Sarcosine oxidase, gamma subunit family. Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD(+). This enzyme catalyzes the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2.	1.48485e-54
NZ_AP014627.1\|WP_060841442.1\|6316492_6317533_+\|low-specificity-L-threonine-aldolase	gnl\|CDD\|224919	COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism].	9.93482e-158
NZ_AP014627.1\|WP_060841450.1\|6331584_6332355_-\|electron-transfer-flavoprotein-subunit-beta	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	8.85481e-31
NZ_AP014627.1\|WP_060841445.1\|6320420_6321521_-\|glycine-betaine-demethylase-subunit-GbcB	gnl\|CDD\|99811	cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins which act as electron carriers in photosynthesis and ferredoxins which participate in redox chains from bacteria to mammals. Ferredoxin reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	1.11152e-133
NZ_AP014627.1\|WP_060841437.1\|6307620_6308478_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|237266	PRK13011, PRK13011, formyltetrahydrofolate deformylase; Reviewed.	0
NZ_AP014627.1\|WP_060841440.1\|6314004_6315258_-\|serine-hydroxymethyltransferase	gnl\|CDD\|237280	PRK13034, PRK13034, serine hydroxymethyltransferase; Reviewed.	0
NZ_AP014627.1\|WP_047289632.1\|6306249_6307449_-\|formaldehyde-dehydrogenase,-glutathione-independent	gnl\|CDD\|274314	TIGR02819, formaldehyde_dehydrogenase_glutathione-independent, formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. [Central intermediary metabolism, One-carbon metabolism].	0
NZ_AP014627.1\|WP_060841441.1\|6315651_6316392_-\|conjugal-transfer-protein-TraX	gnl\|CDD\|368639	pfam05857, TraX, TraX protein. This family consists of several bacterial TraX proteins. TraX is responsible for the amino-terminal acetylation of F-pilin subunits.	3.01744e-44
NZ_AP014627.1\|WP_060841443.1\|6318097_6319543_+\|cytosine-permease	gnl\|CDD\|224374	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism].	1.51256e-95
NZ_AP014627.1\|WP_060841448.1\|6324616_6326485_-\|hypothetical-protein	gnl\|CDD\|184704	PRK14486, PRK14486, putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional.	0.00941824
NZ_AP014627.1\|WP_060841451.1\|6332364_6333585_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	2.03317e-77
NZ_AP014627.1\|WP_060841444.1\|6319539_6320364_+\|carbon-nitrogen-hydrolase	gnl\|CDD\|143604	cd07580, nitrilase_2, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	6.00411e-120
NZ_AP014627.1\|WP_060841439.1\|6312730_6313981_-\|sarcosine-oxidase-subunit-beta-family-protein	gnl\|CDD\|273585	TIGR01373, Sarcosine_oxidase_subunit_beta, sarcosine oxidase, beta subunit family, heterotetrameric form. This model describes the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. [Energy metabolism, Amino acids and amines].	0
NZ_AP014627.1\|WP_011063902.1\|6312413_6312716_-\|sarcosine-oxidase-subunit-delta	gnl\|CDD\|226761	COG4311, SoxD, Sarcosine oxidase delta subunit [Amino acid transport and metabolism].	1.79505e-48
NZ_AP014627.1\|WP_060841438.1\|6309399_6312417_-\|sarcosine-oxidase-subunit-alpha	gnl\|CDD\|273584	TIGR01372, sarcosine_oxidase_alpha_subunit, sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines].	0
NZ_AP014627.1\|WP_060841449.1\|6326614_6330067_-\|GMC-family-oxidoreductase-N-terminal-domain-containing-protein	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	2.31088e-42
NZ_AP014627.1\|WP_060841452.1\|6333584_6335534_-\|dimethylglycine-demethylation-protein-DgcB	gnl\|CDD\|371832	pfam11982, DUF3483, Domain of unknown function (DUF3483). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 230 amino acids in length. This domain is found associated with pfam02754.	1.55519e-117

>NZ_AP014627.1|WP_060841442.1|6316492_6317533_+|low-specificity-L-threonine-aldolase
MTDKSQQFASDNYSGICPEAWAAMEQANHGHERAYGDDQWTARASDHFRKLFETDCEVFFAFNGTAANSLALSSLCQSYHSVICSETAHVETDECGAPEFFSNGSKLLIAGTQNGKLTPESIREIALKRQDIHYPKPRVVTLTQATEVGSVYTPEEVRAISATCKELGLNLHMDGARFSNACAFLGCTPAELTWKAGVDVLCFGGTKNGMAVGEAILFFNHKLAEDFDYRCKQAGQLASKMRFLSAPWVGLLENDAWLKHARHANHCAQLLAQLVADIPGVELMFPVQANGVFLQLSEPAIAALTARGWRFYTFIGKGGARFMCSWDTEEERVRELAADIRTVMSA
>NZ_AP014627.1|WP_060841441.1|6315651_6316392_-|conjugal-transfer-protein-TraX
MRDAMLKTDNSQRDGALDALKWLALLSMVLDHLRYVGLSLDWLYVPGRLAFPWFCLAMAVNLTRLSERAGRPTGQWRYLGWLLLFSALSEIPYRLFVPDPDTLNVLPTLALGLLVARGWQQRRGLALALGLAALLLALGLSRWLMFGAFGVLLPLALLLVLRRPWYFSLLPGALCLAANQWETLFPAARLGNPVATCGIAVCLLAPWLGVMLLRVLRGCTVPAMRRWAYLLYPAHFLLLLALRQLL
>NZ_AP014627.1|WP_060841440.1|6314004_6315258_-|serine-hydroxymethyltransferase
MFSKQDQIQGYDDALLAAINAEEQRQEDHIELIASENYTSKRVMQAQGSGLTNKYAEGYPGKRYYGGCEHVDKVEALAIERAKQLFGADYANVQPHSGSSANSAVYLALLQAGDTILGMSLAHGGHLTHGAKVSSSGKLYNAVQYGIDTRTGLIDYDEVERLAVEHKPKMIVAGFSAYSKTLDFPRFRQIADKVGALLFVDMAHVAGLVAAGLYPNPLPYADVVTTTTHKTLRGPRGGLILVKANEEIEKKLNAAVFPGAQGGPLMHVIAAKAVCFKEALEPGFKVYQQQVIDNAQAMAGVFIKRGYDVVSGGTDNHLFLVSLIRQGLTGKDADAALGRAHITVNKNAVPNDPQSPFVTSGLRIGTPAVTTRGFKVTQCTELAGWICDILDHLGDADVEANVARQVAALCADFPVYR
>NZ_AP014627.1|WP_060841439.1|6312730_6313981_-|sarcosine-oxidase-subunit-beta-family-protein
MQRYSGFGLFKHSLSHHENWQRMWRTPTPKKVYDVVIVGGGGHGLATAYYLAKEHGITNVAVVEKGWLGGGNTARNTTIVRSNYLWDESAQLYEHAMKLWEGLSQDLNYNVMFSQRGVYNLCHTLQDIRDSERRVSANRLNGIDGELLNTQQVADEIPYLDCSKNTRYPILGATVQRRGGVARHDAVAWGFARAADALGVDLIQQTEVIGFRKENGVCIGVETNKGFIGAKRVGVVTAGNSGHMAKLAGFRLPIESHPLQALVSEPIKPIIDSVIMSNAVHGYISQSDKGDLVIGAGIDGWVGYGQRGSYPVIEHTIQAIVEMFPILSRVRMNRQWGGIVDTSPDACPIISKTPVPNMFFNCGWGTGGFKATPGSGNVFAASLAKGEMHPLAAPFSIDRFHNGALIDEHGAAAVAH
>NZ_AP014627.1|WP_011063902.1|6312413_6312716_-|sarcosine-oxidase-subunit-delta
MLHIFCPHCGELRSEEEFHSSGQAHIPRPLDPNACTDEEWGDYMFFRDNPRGLHHELWIHAAGCRQYFNATRDTVTYEILETYKIGTKPQFTAKAAGEKV
>NZ_AP014627.1|WP_060841438.1|6309399_6312417_-|sarcosine-oxidase-subunit-alpha
MSQTNRLSNGGRIDRNKVITFTFNGQSYKGFEGDTLASALLANGVDIIGRSFKYSRPRGIFAAGCEEPNAVLQIGATEATQIPNVRATQQALYQGLVATSTNGWPSVNNDMMGILGKVGGKLMPPGFYYKTFMYPQSFWMTYEKYIRKAAGLGRSPTENDPDTYDNMNQHCDVLIVGAGPAGLAAALAAARSGARVILADEQEEFGGSLLDSRESLDGKPAAEWVASVVAELKSLPDVLLLPRATVNGYHDHNFLTIHERLTDHLGDRAPIGQVRQRIHRVRAKRVVLATGAHERPLVYGNNDVPGNMLAGAVSTYVRRYGVAPGKKLVLSTNNDHAYRVALDWLDASLQVVAIADARHNPRGALVEEARAKGIRILTSSAVIEARGSKHVTGARVAAIDVKAHKVTSPGEWLDCDLIASSGGYSPVVHLASHLGGKPVWREDILGFVPGEAPQKRVCVGGINGVYSLGDTLADGFEGGVRAASEAGFQSVEGVLPKALARLEEPTLALFQVPHEKGTARAPKQFVDLQNDVTAAAIELATREGFESVEHVKRYTALGFGTDQGKLGNVNGLAIAARSLNVSIPQMGTTMFRPNYTPITFGAVAGRHCGHIFEPVRFTALHAWHVKNGAEFEDVGQWKRPWYFPKNGEDLHAAVKRECLAVRDSVGLLDASTLGKIDIQGPDAREFLNRIYTNAWTKLDVGKARYGLMCKEDGMVFDDGVTACLADNHFLMTTTTGGAARVLQWLEIYQQTEWPDLKVYFTSVTDHWATMTLSGPNSRKLLSEVTDIDLDKDGFPFMTWKEGLVGGVPARVFRISFTGELSYEVNVQADYAMGVLEQIVEAGKKYNLTPYGTETMHVLRAEKGFIIVGQDTDGSMTPDDLNMGWCVGRTKPFSWIGWRGMNREDCVREERKQLVGLKPIDPTQWLPEGAQLVFNPKQAIPMSMVGHVTSSYAHNSLGYSFALGVVKGGLKRLGERVFAPLADGRVIEAEIVSSVFFDPKGDRQNI
>NZ_AP014627.1|WP_016964293.1|6308633_6309266_-|sarcosine-oxidase-subunit-gamma-family-protein
MTAVNVYQQRPTTGAKAESPLHHADLPSLVGKGRKNAGVILREKKLLGHLTIRGDGHDPAFAAGVHKALGIELPGALSVVVKGESSLQWLGPDEWLLIVPSGEEFAAEQNLRAALGDLHIQIVNVSGGQQILELSGPNVRQVLMKSTSYDVHPNNFPVGKAVGTVFAKSQLVIRRTGEDTWELLVRRSFSDYWWMWLQDAAAEYGLSVQA
>NZ_AP014627.1|WP_060841437.1|6307620_6308478_-|formyltetrahydrofolate-deformylase
MSRAPDTWILTADCPSVLGTVDAVTRFLFEQGCYVTEHHSFDDRLSGRFFIRVEFRQPDGLDEQGFRQGLAERAKAFEMNFELTAPHYRPKVVIMVSKADHCLNDLLYRQRIGQLPMDVVAVVSNHPDLKPLADWHQIPYHHFPLDPNDKPSQERQVWQVIEESGAELVILARYMQVLSPELCRKLDGKAINIHHSLLPGFKGAKPYHQAYNKGVKLVGATAHYINNDLDEGPIIAQGVEVVDHSYYPEDLIAKGRDIEGLTLARAVGYHIERRVFLNGNRTVVL
>NZ_AP014627.1|WP_047289632.1|6306249_6307449_-|formaldehyde-dehydrogenase,-glutathione-independent
MSGNRGVVYLGSGKVEVQKIDYPKMQDPRGRKIEHGVILRVVSTNICGSDQHMVRGRTTAQVGLVLGHEITGEVIEKGSDVENLKIGDLVSVPFNVACGRCRSCKEQHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSSVYIAGAGPVGLAAAASARLLGAAVVIVGDVNPVRLAHAKAQGFEIADLSKDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHAGAQHEAPATVLNSLMGVVRVAGKIGIPGLYVTEDPGAVDAAAKMGSLSIRFGLGWAKSHSFHTGQTPVMKYNRQLMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGVPKKFVIDPHKLFSAA
>NZ_AP014627.1|WP_047306413.1|6305729_6306002_+|hypothetical-protein
MNRYMPITGHDCNIPSLLIDTQAPLDVLHEAAAFRIRAVTQVLEQLALSDALGKDPVLAQELAQLCAIPLRDGCDLMDVLGRRLRATLIA
>NZ_AP014627.1|WP_060841443.1|6318097_6319543_+|cytosine-permease
MTTQSCVTEKAQSPGLAIETRSIDYVPRNERHGKVWHQGPFWFTGNFVLTTMVTGFTGAALGLALPYAILAIVIGVCLGTFCMAFHANQGPRMGLPQMIQSRAQFGLRGAIVPFTAVVFVYIGFNVFNVILATDAINTVIPGARAPWYSLMIAVAVLIAVVGHDLLHTVQRWLTYVMISVFAVLTVSALLTLQADSAVADAHFSWSAFLIQLSAAAGYQISYSVYVSDYSRYLPHQTPSRQVIFWTYLGAAGSALWLMSLGAFLASALPSPDAIASVREVGNTLIPGFGTFTVLIAVPALVGIMAVNCYGAMLTGISAIDGFKSIKPNLKSRVTGILLVAVVIFLIAMNIPESYLGSFNTFVLLMLYFLVPWTAVNLADFYLVRKGHYAISHIFNPAGIYGRWSSAGLLAYFLGLLAMVPFMSLSFYQGPLSQALGGADIAFVIGLAVAGLVYWGLTRNLDLEAERLAIQASEQQLEGGAQ
>NZ_AP014627.1|WP_060841444.1|6319539_6320364_+|carbon-nitrogen-hydrolase
MIPQGSVKVACQQLAPRIGDLNYNRTLSTEAIRQAAARGAQVVVLPELVQSGYVFRDRKEALALSETLDGPTLSLWKTLAEELQVVIVGGFCERLDEERVANSAALIEPEGTLTVYRKAHLWDQENLIFTPGDEPPPVVPTRFGPIAMMICYDLEFPEWVRLPALAGAALLCAPVNWPDGPRPASERPAEMIRVQANAAVNRMFVAACDRCGQERDVDWVGGSTIVDADGYPLAGKDRHSAEQLLLAELDLAQAWHKSISEHNHVHLDRRPALY
>NZ_AP014627.1|WP_060841445.1|6320420_6321521_-|glycine-betaine-demethylase-subunit-GbcB
MSNTFLNPVTTQTWANGRHIVRCVKVIQETWDVRTFCFMADQPIMFFFKPGQFVTLELEIEGQPVMRSYTISSSPSVPYSFSVTIKRVPGGKVSNWLHDTLHEGQELAVHGPVGLFNAIDFPSPKVLYLSGGVGITPVMSMARWFYDTNGNVDMVFIHSARSPKDIIYHRELEHMASRIDNFSLHLICEKHGLGEPWAGYRGYLNHKMLELMAPDFLEREVFCCGPTPYMNAVKRLLEAAGFDMARYHEESFGATPPEARADAVEHAEQAAEAPEPDLADLHQVEFTASGKSIRVAPGETVHAAAAKLGLMIPKACGMGICGTCKVLKLGGEVVMEHNGGITEEDEAEGYILSCCSVPKGDVRVEY
>NZ_AP014627.1|WP_060841446.1|6321811_6323107_+|glycine-betaine-demethylase-subunit-GbcA
MDVTATLSLGDPLEPARKATAQMLQERERTFSLPQPFYCDERLFDIDMQEIFQKEWLIAGMTCEIPTKGNYITLQIGKNPIIVIRGADGVVHAFHNVCRHRGSRLCTSDKGKVAKLVCHYHQWTYELDGRLLFAGTEMGADFDMKQYGLKPVNVKTAGGYIFISLAENPPAIDDFLATLAHYMEPYDMENTKVAVQTTLHEKANWKLVLENNRECYHCGGSHPELLKTLLEWDDVTDPRADQAFKDHVAASAAAWEAEKIPYAHASFGLRNRIVRMPLLKGTVSMTMDGKQGCAKLMGRIKNPDLGSMRILHLPHSWNHCMGDHIIVFTVWPISAQETVVTTKWLVHKDAVEGVDYDVERMRQVWDATNDQDRRLAEENQRGINSTAYQPGPYSKTYEFGVVNFVDWYSERMLSNLGAEPAPYLKGVPVTG
>NZ_AP014627.1|WP_060841447.1|6323303_6324569_-|metallophosphoesterase
MSFVSNLEHEYEQVKARVDGLLARLDLAWKKLRSQLEPAELQAIVQLLQRAHDQAQYALIHGDLPPGQAPVPWELAHGLSVLHLGNAKPLPQTVAELQTQVMKDGTLLGCRQWELLDLRWSEALLNWIENLRKHAPFGTTPALIEMADNVLLDMAGDWGTGYFQPHSAAQRVADLIKQDQADFTVHLGDVYYAGTGSEENADLADWPMGRQASFSLNSNHEMYSGAHGYFAEIAALFPQQQGTSYFTLFNSHWLIVGLDSAYAADEMNLYMDGNLNPPQQQWLKDLVASKGQGRKIMLLSHHQGLDISGQQQTALYKQVVAALGRVPDYWYWGHLHNGICYAPKDGMYGRCIGHGAIPYGVTRELKGNPQVLWSETLSADDPNYPLRVRNGYVRVKLDGAQISEDFIGETGAVSWSLPRRP
>NZ_AP014627.1|WP_060841448.1|6324616_6326485_-|hypothetical-protein
MNAYIRWFQRFIWLGIAMNMVFALPALFAPALLTAVVGLPPVLSDPWLENTGMLLVGISLFYMPSGCNAPRFVVHSWLCVLSRLIAVAFWIYLINTSNQSQVFVPMLMGDLGMFLVLGLLLYLGSAPANRPWALLCAGLQALREHWAACWARHSFRVGALVTLLVLGFVGYQTWVNMLREVPQPVEASDEDHFKYAAIGLGIEARIPYYLFAVLPQMCPEKLPRPGGYEVFGFLYENGRDLPVGMAKRQLGYPTVEPNCALCHTGAYRASAGDVSQVVPTAPANLMQLQAFQWFAYDCASDPKFTVDALMDAINAKFQLGFIERLYNRYLIMPMARSALLKQKQAYAWQKLRPPQGPGRTDTFNPTKMVVFGFPDDSTIGTVDLPQIWNQKPRESMYLHWDGNNNQIRERNYAAAMAVGATPQSVLPESFNRVTNWLLGHKPPAWPFALDQAKVAQGKPLWEANCAGCHDFGKADTGQVTTNIQALGTDPHRLDSFTTGLVQAFHGFKKPPFDFGAYRKTQSYSNTPTDGVWLRAPYLHNGSVPSLWDLLQAPQLRPQVFYTGSDVYDPQKVGFVTSGPTLQGPGSFKYDTHLEGNSNSGHLYGTQLSEQQKWQLIEYMKTL
>NZ_AP014627.1|WP_060841449.1|6326614_6330067_-|GMC-family-oxidoreductase-N-terminal-domain-containing-protein
MTRIATPISEIQEHYDVIVIGSGYGGGIAASRLSRAGRRVCLLERGREIQPGEYPNTLASATEELQVHDPEGHIGSRTGLFDLHVNAQQNVVVGCGLGGTSLINANVALEPEPGVFDDPRWPQAVREHRDTLLKEGFARAREMLKPNPYPESAPTLPKLVAHRKSAEFLKQGSHFYKPPINVTFSKLPNNLNHVGVEQLPCNHCGDCVSGCNNKAKNTTLMNYLPDACNHGAQIFCQAQVRYLERDGDGWIVHFQYLDSGREKFSAPTLFVKADIVVLSAGTLGSTEILLRSRAKGLSTSAQLGEHMSGNGDILGFGHNCEQTINGIGFGTHSASELKPVGPCITSVIDLRTEGDWRSRMVIEEGSIPGALGRAMVPSMALFAGTLGKATDNSLSGQLGYKEREAESFLRGPYYGALHNMQTYLIMSHDNGRGRMLLDDQDQLRIDWPGVGEQPNVVLGNERLQQCTKALGGIWVENPIWTQLLKHSIVSVHPLGGCVMGEDAGQGVVNHKGQVFCGASGSDVYPGLYVADGAVIPTSLAVNPLLTISAVSERNMRLLAEDRGWKIDYRLPSAPSKAVPAPTLGVQFTETMKGYFSTDFTQPQGTDLALYQAAAQRGEAQNSPIEFTLTITAADLDRMIKEPEHAATLVGTLNAPLLSAQPLVASHGVFNLFEEYQEQVGVRHMNYDMRLSAEDGSEYFFSAFKTVPEDHGVLNIWPDTSTLYVTLYRGRDKNAPVLGSGVMHILPADFARQMTTMKVLNARNERERIEALARFGKFFAGILWESYGGVFAGDIYFNPDAPPRLKRPLDAPVPTVHFFQTEDHVHLRLTRYQAGSKGPVMLVHGLGVGSNIFSTDTIQTNLLEYLCKHDYDVWLLDFRVSILLPASKQECNGDQIAAYDFKAAIGQIKQATGARDVQCVVHCYGATTFFMSLLAGLQDVRSVVCSQIAADTVVAAATGIKAGLHLPGMLDAIGIKSLTAYADSKESWFNKLYDTALNGYARLEAQGYCTNPVCHRITFMYASLYRHDTLNQTLHDNLHELFGASNIETFEHLALICRKGHLVDFKGRDVYMPHFDRLKLPICFISGADNQCYLPQSTQKTYERLCQLHGPELFSRHVVPGYGHIDCIFGKNAVVDVYPLILAHLDKTARG
>NZ_AP014627.1|WP_060841450.1|6331584_6332355_-|electron-transfer-flavoprotein-subunit-beta
MNSNVISLVSIGAHPTSGRPRRAEQDARAVELGLQLAGDKLQVLHAGDVAEPALRAYLGMGLEQLHVLEQPAGADALPILTQYLREAGAQVVLTGSQAETGEGSGMLPFLLAENLGWPLVVGLAQVESLADGVAHVLQALPRGQRRRLKVRLPFLATVDNAAPKPRQSAYGPARRGLLQADQVMVVEDELFTTSSLQPAKPRPKRLKVIKAKSGADRMKAATAKASGGTGQVLKGVSPEAGAEAILKLLIEEGVVR
>NZ_AP014627.1|WP_060841451.1|6332364_6333585_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MSEIIRRDPRAEWIARNRLHPLHAAMQPAQHSWMGPNGLIRKNPHGIGFIGPNGLKRIDRSGAQQGGSAKRTAAAEVQLPLHQVAQPAFYINVVPDMVGGRLSSHDRDLLGLARQLAGQDGAVLAVVFGEHKESAFATAGVDRLLVLPGSEFDGYAPEQRVQGLRAVDNQFSPRHWLLPDSRTGGGELGRRLAAALGERPATRVWQVKDGQCIGRAGAGLQDLARPAPRLILAAAECAEPVSETRHEALPVELSTSVARSLARIEDLGAVAVDPAAIPMAEAEFIFSGGNGVKDWPLFHQTAAALGATEGASRVAVDDGFMARDRQVGASGIWVTARVYVAVGISGAIQHLQGIGACDKVVAINLDPGCDMIKRADLSVIGDSAEILRALIAAVAAYRNDAKRDAA
>NZ_AP014627.1|WP_060841452.1|6333584_6335534_-|dimethylglycine-demethylation-protein-DgcB
MLNTLLPILLFAAVGLAVLGALRRVALWRQGRASKVDLLGGLLAMPKRYMVDLHHVVARDKYMANTHVATAGGFVLAAVLAILVHGFGLHNRILGYALLLATTLMFVGALFVAKRRRNPPARLSKGPWMRLPKSLLAFSVSFFVVTLPVAGILPEHFGGWVLAAILAVGVLWGVSELFFGMTWGGPMKHAFAGALHLAWHRRAERFGGGRSTGLKPLDLEDPSAPLGVEKPKDFTWNQLLGFDACVQCGKCEAACPAFAAGQPLNPKKLIQDMVVGLAGGTDAQFAGSPYPGKPIGEHGGHPHQPIVNGLVDAETLWSCTTCRACVEECPMMIEHVDAIVDMRRHLTLEKGATPNKGAEVLENLIATDNPGGFNPGGRMNWAADLNLSLLSDKQSTDVLFWVGDGAFDMRNQRTLRAFVKVLKAAKVDFAVLGLEERDSGDVARRLGDEATFQLLAKRNIQTLAKYRFKRIVTCDPHSFHVLKNEYGAFNGHYLVQHHSTYLAELIDAGALNLGQHKGSSVTYHDPCYLGRYNGEYEAPREVLRALGIEIKEMQRSGFRSRCCGGGGGAPITDIPGKQRIPDMRMEDIRETGAELVAVGCPQCTAMLEGVVEPRPMIKDIAELVADALLEDVAPGKAPVAVKPEPAEVH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_AP014627_2	2.1\|2445176\|31\|NZ_AP014627\|CRISPRCasFinder	2445176-2445206	31	NZ_AP014627.1	2499800-2499830	1	0.968
NZ_AP014627_2	2.1\|2445176\|31\|NZ_AP014627\|CRISPRCasFinder	2445176-2445206	31	NZ_AP014627.1	2297986-2298016	2	0.935

1. spacer 2.1|2445176|31|NZ_AP014627|CRISPRCasFinder matches to position: 2499800-2499830, mismatch: 1, identity: 0.968

tgaccgcagcaacggatatgtaccccgtccc	CRISPR spacer
tgaccgcagcaccggatatgtaccccgtccc	Protospacer
*********** *******************

2. spacer 2.1|2445176|31|NZ_AP014627|CRISPRCasFinder matches to position: 2297986-2298016, mismatch: 2, identity: 0.935

tgaccgcagcaacggatatgtaccccgtccc	CRISPR spacer
tgaccgcagcaacgaatatgtaccccgcccc	Protospacer
**************.************.***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

333427 : 341343

Enterobacteria_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060837061.1\|333427_333973_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-49	55.6
WP_060837062.1\|333969_334845_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.1e-106	65.1
WP_060837063.1\|334841_335924_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.7e-99	53.9
WP_060837064.1\|336164_339083_+	aminotransferase	A0A1V0SKB7	Klosneuvirus	9.5e-17	24.1
WP_016963615.1\|339352_340231_+	N-carbamoylputrescine amidase	A7IVZ1	Paramecium_bursaria_Chlorella_virus	3.9e-75	47.6
WP_060837065.1\|340236_341343_+	agmatine deiminase	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	4.2e-106	51.7

DBSCAN-SWA_2

1315216 : 1422538

104

Pseudomonas_phage(34.0%)

protease,holin,bacteriocin,tail,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082729825.1\|1315216_1316032_+\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	8.6e-08	32.2
WP_060837756.1\|1316155_1316566_-	SufE family protein	NA	NA	NA	NA
WP_060837757.1\|1316562_1317768_-	aminotransferase class V-fold PLP-dependent enzyme	Q2XUY6	environmental_halophage	3.7e-68	35.6
WP_015634328.1\|1317844_1318879_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_011059519.1\|1318912_1319275_-	ArsC family reductase	NA	NA	NA	NA
WP_060837758.1\|1319512_1321159_+	Na+/H+ antiporter	NA	NA	NA	NA
WP_060837759.1\|1321231_1322431_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
WP_060837760.1\|1322469_1325172_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_047302039.1\|1325220_1326003_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_011059524.1\|1326410_1327148_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_060837761.1\|1327351_1328218_+	elongation factor Ts	NA	NA	NA	NA
WP_011059526.1\|1328426_1329170_+	UMP kinase	NA	NA	NA	NA
WP_011059527.1\|1329166_1329724_+	ribosome recycling factor	NA	NA	NA	NA
WP_060837762.1\|1330495_1331302_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_060837763.1\|1331298_1332489_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_060837764.1\|1332537_1333890_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_060837765.1\|1333964_1336352_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_016964695.1\|1336397_1336901_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_060837766.1\|1336904_1337960_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_007924058.1\|1338069_1338510_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_060837767.1\|1338506_1339283_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_164990715.1\|1339282_1340416_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_060837769.1\|1340427_1341060_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	4.4e-28	40.0
WP_060837770.1\|1341129_1344651_+	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	5.6e-197	38.1
WP_016964689.1\|1344790_1345738_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_060837771.1\|1345874_1347191_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_016964687.1\|1347465_1349097_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.4e-158	53.6
WP_042940934.1\|1349102_1349948_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	7.9e-49	42.4
WP_060837772.1\|1350105_1351395_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	9.0e-137	59.7
WP_011059544.1\|1351567_1351846_+	cell division protein FtsB	NA	NA	NA	NA
WP_060837773.1\|1351842_1352550_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_060837774.1\|1352666_1353566_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_060837775.1\|1353670_1354783_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.9e-29	27.4
WP_060837776.1\|1354870_1355716_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_060837777.1\|1355768_1356242_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_060837778.1\|1356238_1357297_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_047302063.1\|1357284_1358034_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.0e-68	53.0
WP_173655928.1\|1358075_1358711_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.1e-41	49.8
WP_082729826.1\|1358922_1359804_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	6.6e-06	33.3
WP_016964675.1\|1359910_1360918_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.6e-34	35.8
WP_016964674.1\|1361435_1361759_-	ferredoxin family protein	NA	NA	NA	NA
WP_060837779.1\|1361901_1364481_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	1.4e-27	24.0
WP_060837780.1\|1364667_1365414_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	1.0e-124	89.9
WP_016967167.1\|1365932_1366283_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	3.7e-53	89.7
WP_060837781.1\|1366363_1366885_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	2.0e-18	32.9
WP_060837782.1\|1366881_1367472_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	3.2e-57	77.1
WP_060837783.1\|1367552_1367756_+	hypothetical protein	NA	NA	NA	NA
WP_060837784.1\|1367760_1368087_+	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	2.1e-37	69.4
WP_060837785.1\|1368083_1368965_+\|plate	baseplate J/gp47 family protein	A0A2H4JFK9	uncultured_Caudovirales_phage	1.6e-97	63.7
WP_060837786.1\|1368966_1369572_+\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	6.0e-75	67.8
WP_173655888.1\|1369568_1371980_+\|tail	phage tail protein	A0A077K818	Ralstonia_phage	3.2e-103	41.9
WP_082729944.1\|1372025_1372412_+\|tail	phage tail protein	Q9ZXK5	Pseudomonas_virus	1.1e-16	43.2
WP_060837788.1\|1372513_1373680_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	6.0e-180	80.5
WP_016965333.1\|1373692_1374202_+\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	8.7e-67	73.7
WP_060837789.1\|1374214_1374520_+\|tail	phage tail assembly protein	A0A2H4J873	uncultured_Caudovirales_phage	1.4e-19	55.1
WP_060837790.1\|1374661_1377286_+\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	5.5e-72	33.5
WP_060837791.1\|1377295_1378141_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	3.3e-95	62.9
WP_047302087.1\|1378115_1378322_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	3.8e-21	71.6
WP_060837792.1\|1378383_1379427_+	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	1.9e-148	75.2
WP_060837793.1\|1379531_1380683_+	glycosyl hydrolase	A0A2L0HM30	Microbacterium_phage	3.4e-10	29.5
WP_060837794.1\|1380845_1381421_+	hypothetical protein	B5TK65	Pseudomonas_phage	4.2e-70	67.2
WP_047302105.1\|1381417_1381600_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	7.7e-18	76.7
WP_060837795.1\|1381599_1383096_+\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	1.2e-249	87.8
WP_016965085.1\|1383162_1383510_+\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	4.4e-54	87.0
WP_060837796.1\|1383506_1383803_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	4.3e-42	91.8
WP_060837797.1\|1383933_1385469_+	hypothetical protein	B5TK70	Pseudomonas_phage	2.1e-39	39.6
WP_060837798.1\|1385458_1386703_+	DNA circularization N-terminal domain-containing protein	B5TK71	Pseudomonas_phage	4.1e-171	73.2
WP_060837799.1\|1386706_1387747_+\|plate	baseplate protein	B5TK72	Pseudomonas_phage	1.6e-152	79.2
WP_060837800.1\|1387855_1388362_+\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	6.6e-75	86.9
WP_060837801.1\|1388364_1388763_+	phage GP46 family protein	B5TK74	Pseudomonas_phage	2.5e-61	84.8
WP_060837802.1\|1388752_1389793_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	5.2e-159	83.4
WP_060837803.1\|1389780_1390380_+	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	2.6e-94	82.4
WP_060837804.1\|1390395_1391961_+\|tail	tail fiber protein	A0A088FQW7	Escherichia_phage	1.0e-25	38.7
WP_060837805.1\|1391957_1392434_+	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_129405450.1\|1394027_1394282_+	hypothetical protein	NA	NA	NA	NA
WP_060837806.1\|1394327_1394891_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	3.0e-84	81.1
WP_060837807.1\|1395046_1395553_+	hypothetical protein	A0A1S5NQ26	Burkholderia_phage	1.5e-23	62.1
WP_082729320.1\|1395623_1395809_+	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	1.3e-12	89.5
WP_060837808.1\|1395817_1396660_+\|bacteriocin	putidacin L1 family lectin-like bacteriocin	NA	NA	NA	NA
WP_020372545.1\|1396837_1397170_+	hypothetical protein	NA	NA	NA	NA
WP_060837810.1\|1397336_1397837_+	CinA family protein	B5TK85	Pseudomonas_phage	3.3e-71	84.3
WP_011059579.1\|1397920_1398973_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	2.0e-113	61.0
WP_060837811.1\|1398981_1399449_+	recombination regulator RecX	NA	NA	NA	NA
WP_060837812.1\|1399488_1400607_-	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
WP_060837813.1\|1401048_1401243_+	hypothetical protein	NA	NA	NA	NA
WP_060837814.1\|1401243_1401669_-	quorum-sensing-regulated virulence factor family protein	NA	NA	NA	NA
WP_060837815.1\|1401860_1402571_+	DTW domain-containing protein	NA	NA	NA	NA
WP_060837816.1\|1402554_1403463_-	DMT family transporter	NA	NA	NA	NA
WP_060837817.1\|1403701_1404352_+	response regulator transcription factor	NA	NA	NA	NA
WP_173655929.1\|1404421_1404790_+	diacylglycerol kinase	NA	NA	NA	NA
WP_060837818.1\|1404786_1405713_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_016966062.1\|1405832_1406612_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_060837819.1\|1406734_1407430_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_016966060.1\|1407506_1407968_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	2.7e-35	49.3
WP_060837820.1\|1408034_1408745_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_060837821.1\|1408827_1409301_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_047284184.1\|1409398_1410736_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_060837822.1\|1411056_1412958_+	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	2.9e-75	33.7
WP_016964747.1\|1413113_1413389_-	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_060837823.1\|1413827_1415126_-	virulence factor family protein	NA	NA	NA	NA
WP_060837824.1\|1415125_1417777_-	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA
WP_060837825.1\|1418703_1419771_+	DNA polymerase IV	NA	NA	NA	NA
WP_060837826.1\|1419851_1420805_-	hypothetical protein	NA	NA	NA	NA
WP_060837827.1\|1420822_1422538_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_3

3869409 : 3918444

Pseudomonas_phage(56.82%)

capsid,terminase,holin,bacteriocin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082729883.1\|3869409_3870453_+	nucleoid-associated protein YejK	L7TI92	Pseudomonas_virus	1.3e-122	66.3
WP_159426424.1\|3870468_3871497_-	hypothetical protein	NA	NA	NA	NA
WP_060839631.1\|3871598_3872153_-	hypothetical protein	NA	NA	NA	NA
WP_082729885.1\|3872258_3872720_+	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	1.1e-12	32.6
WP_060839632.1\|3873481_3873775_-	hypothetical protein	A0A2H4JER5	uncultured_Caudovirales_phage	2.3e-32	61.9
WP_060839633.1\|3873891_3874572_+	SOS response-associated peptidase family protein	A0A2H4J991	uncultured_Caudovirales_phage	4.5e-111	80.5
WP_148654968.1\|3874619_3874985_-	hypothetical protein	NA	NA	NA	NA
WP_173655948.1\|3875321_3875666_-	hypothetical protein	A0A0S2SY58	Pseudomonas_phage	6.6e-18	46.4
WP_060839636.1\|3875692_3876136_-	structural protein P5	A0A2H4J6R1	uncultured_Caudovirales_phage	1.1e-33	51.4
WP_060839637.1\|3876193_3877018_-	hypothetical protein	NA	NA	NA	NA
WP_060839638.1\|3877017_3877308_-	hypothetical protein	NA	NA	NA	NA
WP_060839639.1\|3877304_3880394_-	host specificity protein J	Q3HQU5	Burkholderia_phage	1.0e-282	46.4
WP_060839640.1\|3880451_3881021_-\|tail	tail assembly protein	A0A1B0VME1	Pseudomonas_phage	3.0e-44	54.1
WP_060839641.1\|3881460_3881853_-	hypothetical protein	A0A286S1N7	Klebsiella_phage	2.3e-11	33.9
WP_060839642.1\|3881943_3882276_+	hypothetical protein	NA	NA	NA	NA
WP_060839643.1\|3882354_3882684_+	hypothetical protein	NA	NA	NA	NA
WP_148654969.1\|3882747_3883050_+	hypothetical protein	NA	NA	NA	NA
WP_060839644.1\|3883098_3883338_+	hypothetical protein	NA	NA	NA	NA
WP_148654970.1\|3883470_3883830_-	hypothetical protein	NA	NA	NA	NA
WP_148654971.1\|3883826_3884246_-	hypothetical protein	NA	NA	NA	NA
WP_060839645.1\|3884433_3884967_+	hypothetical protein	NA	NA	NA	NA
WP_060839646.1\|3884963_3885734_-	C40 family peptidase	A0A2I6PI52	Pseudomonas_phage	8.5e-82	54.5
WP_060839647.1\|3885736_3886420_-\|tail	phage minor tail protein L	A0A2I6PIA7	Pseudomonas_phage	3.5e-87	66.1
WP_060839648.1\|3886494_3888279_-	hypothetical protein	A0A2K9VHT9	Pseudomonas_phage	2.7e-38	44.6
WP_060839649.1\|3888275_3888614_-\|tail	phage tail protein	A0A1B0VMG7	Pseudomonas_phage	2.7e-32	56.2
WP_060839650.1\|3888659_3891983_-\|tail	phage tail tape measure protein	A0A1B0VMG8	Pseudomonas_phage	3.7e-118	35.4
WP_060839651.1\|3891979_3892231_-	DUF1799 domain-containing protein	A0A2H4J4F7	uncultured_Caudovirales_phage	9.6e-19	55.1
WP_011062036.1\|3892296_3892677_-\|tail	phage tail assembly chaperone	A0A2H4IYQ5	uncultured_Caudovirales_phage	5.7e-31	53.5
WP_053158993.1\|3892680_3893334_-\|tail	phage tail protein	A0A1S5R1H0	Pseudomonas_phage	4.1e-53	49.3
WP_060839652.1\|3893406_3893823_-	DUF4128 domain-containing protein	A0A2H4J4N2	uncultured_Caudovirales_phage	9.6e-48	65.2
WP_060839653.1\|3893819_3894473_-	hypothetical protein	A0A1B0VMI1	Pseudomonas_phage	3.5e-105	87.5
WP_060839654.1\|3894469_3894838_-	hypothetical protein	A0A1B0VRJ4	Pseudomonas_phage	4.5e-49	79.2
WP_060839655.1\|3894862_3895171_+	hypothetical protein	NA	NA	NA	NA
WP_060839656.1\|3895172_3895676_-	hypothetical protein	A0A1B0VND3	Pseudomonas_phage	1.1e-77	87.4
WP_060839657.1\|3895679_3895988_-	hypothetical protein	A0A2H4J0G3	uncultured_Caudovirales_phage	2.1e-07	53.8
WP_060839658.1\|3896039_3896987_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	8.1e-127	69.3
WP_060839659.1\|3896998_3897715_-	hypothetical protein	A0A2H4J0Y0	uncultured_Caudovirales_phage	1.5e-32	47.5
WP_148654972.1\|3897877_3898459_+	hypothetical protein	NA	NA	NA	NA
WP_060839660.1\|3898471_3899563_-\|capsid	minor capsid protein	A0A1B0VMF3	Pseudomonas_phage	5.3e-146	72.9
WP_060839661.1\|3899537_3901001_-	DUF4055 domain-containing protein	A0A2H4J5M6	uncultured_Caudovirales_phage	8.9e-173	62.7
WP_060839662.1\|3900997_3902299_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	7.5e-147	59.2
WP_060839663.1\|3902285_3902747_-	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	7.4e-49	75.8
WP_060839664.1\|3902777_3903401_-	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	2.9e-109	91.8
WP_148655004.1\|3903497_3903677_+	hypothetical protein	NA	NA	NA	NA
WP_060839666.1\|3903708_3903963_-	hypothetical protein	NA	NA	NA	NA
WP_060839667.1\|3903959_3904151_-	hypothetical protein	NA	NA	NA	NA
WP_060839668.1\|3904143_3904506_-	hypothetical protein	A0A2H4J3Y5	uncultured_Caudovirales_phage	1.0e-53	87.4
WP_060839669.1\|3904562_3904886_-\|holin	phage holin, lambda family	A0A1W6JTC7	Pseudomonas_phage	5.4e-22	50.0
WP_053152077.1\|3904972_3905275_-	hypothetical protein	NA	NA	NA	NA
WP_148654973.1\|3905275_3906184_-\|bacteriocin	lipid II-degrading bacteriocin	NA	NA	NA	NA
WP_060839671.1\|3906459_3907146_-	hypothetical protein	NA	NA	NA	NA
WP_060839672.1\|3907142_3907757_-	recombination protein NinG	A0A125RNK9	Pseudomonas_phage	7.0e-63	63.1
WP_011062057.1\|3907753_3908341_-	DUF1367 family protein	Q9MC49	Pseudomonas_phage	1.7e-95	84.6
WP_060839673.1\|3908333_3909119_-	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	1.1e-52	50.0
WP_060839674.1\|3909108_3910011_-	helix-turn-helix domain-containing protein	A0A1B0VME0	Pseudomonas_phage	4.7e-47	64.8
WP_060839675.1\|3910007_3910802_-	Rha family transcriptional regulator	A0A2H4J5H6	uncultured_Caudovirales_phage	5.7e-41	39.3
WP_060839676.1\|3910995_3911610_-	hypothetical protein	NA	NA	NA	NA
WP_080644463.1\|3911664_3911886_-	helix-turn-helix domain-containing protein	A0A2D1GND2	Pseudomonas_phage	6.5e-19	60.3
WP_060839677.1\|3911982_3912744_+	helix-turn-helix transcriptional regulator	A0A1B0VRI7	Pseudomonas_phage	4.8e-69	54.7
WP_060839678.1\|3912770_3913151_+	zinc ribbon domain-containing protein	A0A1V0E899	Vibrio_phage	1.6e-09	31.7
WP_060839679.1\|3913179_3913425_+	hypothetical protein	NA	NA	NA	NA
WP_060839680.1\|3913421_3913640_+	hypothetical protein	NA	NA	NA	NA
WP_060839681.1\|3914378_3915230_+	ParB N-terminal domain-containing protein	A0A1B0YZX8	Pseudomonas_phage	4.2e-90	63.9
WP_159426425.1\|3915312_3915504_-	hypothetical protein	NA	NA	NA	NA
WP_134532617.1\|3915788_3916067_+	hypothetical protein	NA	NA	NA	NA
WP_060839683.1\|3916063_3916486_+	hypothetical protein	NA	NA	NA	NA
WP_060839684.1\|3916482_3916674_+	hypothetical protein	A0A1B0VMB8	Pseudomonas_phage	2.1e-10	51.6
WP_060839685.1\|3916670_3916868_+	hypothetical protein	NA	NA	NA	NA
WP_173655904.1\|3916867_3917044_+	hypothetical protein	A0A0S2SY66	Pseudomonas_phage	1.7e-06	52.6
WP_082729887.1\|3917149_3917884_+	hypothetical protein	A0A2H4J2D5	uncultured_Caudovirales_phage	1.0e-52	49.4
WP_060839687.1\|3917880_3918444_+	siphovirus Gp157 family protein	A0A2H4IZG3	uncultured_Caudovirales_phage	5.3e-65	70.1

DBSCAN-SWA_4

3929148 : 3994141

uncultured_Caudovirales_phage(77.14%)

capsid,protease,portal,integrase,lysis,terminase,holin,tail,plate,head

attL 3955719:3955778|attR 3999743:3999837

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053159094.1\|3929148_3930180_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	3.3e-97	56.0
WP_148654976.1\|3930494_3930683_+	hypothetical protein	NA	NA	NA	NA
WP_060839701.1\|3930713_3930932_-	hypothetical protein	NA	NA	NA	NA
WP_060839702.1\|3931208_3931472_-	DUF1652 domain-containing protein	NA	NA	NA	NA
WP_060839703.1\|3931829_3932327_+	ATP-binding protein	A0A2H4JFX6	uncultured_Caudovirales_phage	1.6e-25	37.7
WP_060839704.1\|3932890_3933499_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_060839705.1\|3933593_3934226_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_060839706.1\|3934284_3934821_+	hypothetical protein	NA	NA	NA	NA
WP_164990723.1\|3934955_3935660_+	HAD-IB family hydrolase	NA	NA	NA	NA
WP_060839708.1\|3935818_3936736_+	hypothetical protein	NA	NA	NA	NA
WP_060839709.1\|3936722_3937208_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_060839710.1\|3937320_3938589_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_060839711.1\|3938655_3939123_-	RcnB family protein	NA	NA	NA	NA
WP_060839712.1\|3939264_3939498_-	YceK/YidQ family lipoprotein	NA	NA	NA	NA
WP_060839713.1\|3939567_3940071_-	hypothetical protein	NA	NA	NA	NA
WP_060839714.1\|3940254_3940500_+	hypothetical protein	NA	NA	NA	NA
WP_159426427.1\|3940597_3940753_-	hypothetical protein	NA	NA	NA	NA
WP_060839716.1\|3941007_3941976_-	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_060839717.1\|3942215_3942689_+	hypothetical protein	NA	NA	NA	NA
WP_016966878.1\|3942777_3942915_-	hypothetical protein	NA	NA	NA	NA
WP_003083582.1\|3942976_3943117_-	hypothetical protein	NA	NA	NA	NA
WP_082729266.1\|3943513_3943675_+	DUF2986 domain-containing protein	NA	NA	NA	NA
WP_060839718.1\|3943691_3945200_-	diguanylate cyclase	G3MA91	Bacillus_virus	3.0e-14	29.4
WP_148654977.1\|3945423_3945771_+	hypothetical protein	NA	NA	NA	NA
WP_060839720.1\|3946009_3947650_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	3.8e-55	41.5
WP_173655905.1\|3948054_3949017_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_082729890.1\|3950001_3950385_+	TipAS antibiotic-recognition domain-containing protein	NA	NA	NA	NA
WP_060839721.1\|3950901_3951279_-	hypothetical protein	NA	NA	NA	NA
WP_060839722.1\|3951303_3951867_-	hypothetical protein	NA	NA	NA	NA
WP_060839723.1\|3952381_3952741_-	hypothetical protein	NA	NA	NA	NA
WP_082729891.1\|3953047_3953407_-	hypothetical protein	NA	NA	NA	NA
WP_060839724.1\|3954455_3954944_+	hypothetical protein	NA	NA	NA	NA
WP_146189206.1\|3954989_3955304_-	hypothetical protein	NA	NA	NA	NA
3955719:3955778	attL	NA	NA	NA	NA
WP_060839726.1\|3956567_3957710_-	HNH endonuclease	NA	NA	NA	NA
WP_173655906.1\|3958655_3959357_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_060839728.1\|3960018_3960540_-\|lysis	lysis protein	A0A2H4JBH9	uncultured_Caudovirales_phage	6.4e-33	52.0
WP_060839729.1\|3960536_3961088_-	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	1.0e-68	74.3
WP_060839730.1\|3961115_3962159_-	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	1.1e-153	77.5
WP_148654978.1\|3962222_3962663_-	hypothetical protein	NA	NA	NA	NA
WP_060839731.1\|3962712_3962919_-\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	1.9e-20	68.7
WP_060839732.1\|3962893_3963739_-\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	1.3e-99	64.6
WP_060839733.1\|3963748_3966307_-\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	6.5e-78	34.2
WP_060839734.1\|3966448_3966754_-\|tail	phage tail assembly protein	A0A2H4J873	uncultured_Caudovirales_phage	1.2e-20	59.1
WP_041118645.1\|3966765_3967275_-\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	3.3e-66	72.5
WP_060839735.1\|3967287_3968454_-\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	1.0e-179	80.7
WP_173655949.1\|3968553_3968922_-	hypothetical protein	NA	NA	NA	NA
WP_082729893.1\|3968989_3970870_-\|tail	phage tail protein	A0A077K818	Ralstonia_phage	8.6e-104	42.3
WP_060839737.1\|3970866_3971472_-\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	1.2e-75	70.2
WP_060839738.1\|3971473_3972355_-\|plate	baseplate J/gp47 family protein	A0A2H4JFK9	uncultured_Caudovirales_phage	3.4e-95	62.1
WP_060839739.1\|3972351_3972678_-	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	2.7e-37	70.4
WP_060841961.1\|3972682_3972883_-	hypothetical protein	NA	NA	NA	NA
WP_060839740.1\|3973161_3973710_+	hypothetical protein	NA	NA	NA	NA
WP_060839741.1\|3973835_3974414_-\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	3.5e-56	69.1
WP_060841962.1\|3974410_3974923_-	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	1.5e-47	55.6
WP_060839742.1\|3974915_3975569_-	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	6.3e-70	63.2
WP_060839743.1\|3975565_3975880_-	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	2.0e-29	61.2
WP_060839744.1\|3975882_3976878_-\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	2.2e-170	87.9
WP_060839745.1\|3976941_3977286_-\|head	head decoration protein	A0A2H4JF15	uncultured_Caudovirales_phage	2.6e-46	84.2
WP_060839746.1\|3977282_3978425_-\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	1.4e-144	72.7
WP_060839747.1\|3978421_3979903_-\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	5.9e-241	83.4
WP_047287306.1\|3979902_3980109_-	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	2.8e-24	80.9
WP_060839748.1\|3980110_3982132_-\|terminase	phage terminase large subunit family protein	A0A2H4J898	uncultured_Caudovirales_phage	0.0e+00	83.4
WP_060839749.1\|3982112_3982745_-	hypothetical protein	A0A2H4JG15	uncultured_Caudovirales_phage	1.2e-62	66.8
WP_060839750.1\|3982952_3983687_+	hypothetical protein	NA	NA	NA	NA
WP_060839751.1\|3983858_3984200_-\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	4.0e-44	81.5
WP_060839752.1\|3984720_3985086_-	hypothetical protein	NA	NA	NA	NA
WP_060839753.1\|3985078_3987298_-	conjugal transfer protein TraC	A0A2D1GN57	Marinobacter_phage	6.9e-193	46.7
WP_060839754.1\|3987290_3987515_-	TraR/DksA family transcriptional regulator	A0A218M4I6	Erwinia_phage	8.0e-09	44.9
WP_041118664.1\|3987507_3988026_-	hypothetical protein	NA	NA	NA	NA
WP_060839755.1\|3988352_3988544_-	Cro/Cl family transcriptional regulator	NA	NA	NA	NA
WP_082729894.1\|3988644_3989298_+	helix-turn-helix transcriptional regulator	H2BDH4	Pseudomonas_virus	1.5e-39	39.0
WP_060839758.1\|3989727_3990360_+	BRCT domain-containing protein	A0A0U4J8W4	Pseudomonas_phage	3.1e-74	60.1
WP_082729895.1\|3990492_3990672_+	hypothetical protein	NA	NA	NA	NA
WP_060839759.1\|3990668_3991253_+	hypothetical protein	NA	NA	NA	NA
WP_047287326.1\|3991262_3991547_+	hypothetical protein	NA	NA	NA	NA
WP_173655907.1\|3991533_3991713_+	hypothetical protein	NA	NA	NA	NA
WP_060839760.1\|3991705_3992032_+	pyocin activator PrtN family protein	NA	NA	NA	NA
WP_060839761.1\|3992076_3992496_+	hypothetical protein	NA	NA	NA	NA
WP_041118671.1\|3992836_3993073_+	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	1.1e-24	70.1
WP_060839762.1\|3993076_3994141_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	4.7e-115	61.1
3999743:3999837	attR	NA	NA	NA	NA

DBSCAN-SWA_5

4472250 : 4478470

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060840113.1\|4472250_4472643_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	9.0e-56	81.4
WP_060840114.1\|4472644_4473007_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	4.4e-41	70.0
WP_060840115.1\|4473006_4473303_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.2e-28	65.7
WP_016966956.1\|4473299_4473635_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	8.0e-45	78.4
WP_060840116.1\|4473631_4474633_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	5.3e-169	86.2
WP_060840117.1\|4474721_4475723_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_060840118.1\|4475794_4477189_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_060840119.1\|4477189_4478470_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.7e-98	53.9

DBSCAN-SWA_6

6297719 : 6366327

Aeromonas_phage(28.57%)

holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016963060.1\|6297719_6298220_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_060841427.1\|6298501_6299389_+	acyltransferase	NA	NA	NA	NA
WP_060841428.1\|6299389_6300544_-	glutathionylspermidine synthase family protein	A0A219YAG8	Aeromonas_phage	4.4e-58	33.7
WP_060841429.1\|6300540_6301266_-	DUF1190 domain-containing protein	NA	NA	NA	NA
WP_060841430.1\|6301276_6301705_-	DUF350 domain-containing protein	NA	NA	NA	NA
WP_060841431.1\|6301866_6302430_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_082729304.1\|6302600_6303260_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_060841433.1\|6303256_6303931_+	anti-sigma factor	NA	NA	NA	NA
WP_060841434.1\|6304081_6304645_+	hypothetical protein	NA	NA	NA	NA
WP_060841435.1\|6304707_6305022_-	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_060841436.1\|6304987_6305278_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_047306413.1\|6305729_6306002_+	hypothetical protein	NA	NA	NA	NA
WP_047289632.1\|6306249_6307449_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	2.9e-12	29.3
WP_060841437.1\|6307620_6308478_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_016964293.1\|6308633_6309266_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_060841438.1\|6309399_6312417_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_011063902.1\|6312413_6312716_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_060841439.1\|6312730_6313981_-	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_060841440.1\|6314004_6315258_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.7e-100	53.5
WP_060841441.1\|6315651_6316392_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_060841442.1\|6316492_6317533_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_060841443.1\|6318097_6319543_+	cytosine permease	NA	NA	NA	NA
WP_060841444.1\|6319539_6320364_+	carbon-nitrogen hydrolase	A7K8C9	Acanthocystis_turfacea_chlorella_virus	5.2e-21	34.8
WP_060841445.1\|6320420_6321521_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_060841446.1\|6321811_6323107_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_060841447.1\|6323303_6324569_-	metallophosphoesterase	NA	NA	NA	NA
WP_060841448.1\|6324616_6326485_-	hypothetical protein	NA	NA	NA	NA
WP_060841449.1\|6326614_6330067_-	GMC family oxidoreductase N-terminal domain-containing protein	NA	NA	NA	NA
WP_060841450.1\|6331584_6332355_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_060841451.1\|6332364_6333585_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_060841452.1\|6333584_6335534_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_060841453.1\|6335761_6337822_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_016962810.1\|6337837_6338368_-	hypothetical protein	NA	NA	NA	NA
WP_060842023.1\|6338529_6339507_-	dipeptidase	NA	NA	NA	NA
WP_060841454.1\|6339742_6340144_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_060841455.1\|6340266_6340617_-	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_060841456.1\|6340613_6341123_-	nucleoside deaminase	NA	NA	NA	NA
WP_060841457.1\|6341181_6342519_-	purine permease	NA	NA	NA	NA
WP_060841458.1\|6342697_6343612_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_060841459.1\|6343823_6344240_+	DUF3010 family protein	NA	NA	NA	NA
WP_060841460.1\|6344295_6345255_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_060841461.1\|6345449_6346394_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_060841462.1\|6346481_6347369_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_060841463.1\|6347472_6348438_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_060841464.1\|6348547_6349024_+	thioesterase family protein	NA	NA	NA	NA
WP_060841465.1\|6349048_6350209_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_082729344.1\|6350525_6350954_-	DUF4952 domain-containing protein	NA	NA	NA	NA
WP_148654992.1\|6350957_6351725_-	hypothetical protein	NA	NA	NA	NA
WP_060841467.1\|6351735_6352242_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_016962894.1\|6352513_6352777_+	hypothetical protein	NA	NA	NA	NA
WP_060841468.1\|6352843_6353290_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_060841469.1\|6353290_6354394_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_060841470.1\|6354840_6356217_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_060841471.1\|6356644_6357592_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_060841472.1\|6357657_6358503_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_060841473.1\|6358499_6359678_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-25	37.1
WP_060841474.1\|6359865_6361875_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	9.2e-19	26.8
WP_060841475.1\|6362304_6362925_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_060841476.1\|6363006_6364479_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_060841477.1\|6364623_6366327_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.0e-50	30.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP014627

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection