CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP014724	Sulfurospirillum cavolei strain UCH003	7 crisprs	DEDDh,cas3,csa3,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,WYL	2	4	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP014724_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014724_1

306243-306377

Orphan

Consensus_repeat	Method
TAAAAGCGTGATAAAGATCAAAAAGCACCGAAGGTGCGCGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014724_1

>merge|NZ_AP014724|1|306243-306377|CRISPRCasFinder
TAAAAGCGTGATAAAGATCAAAAAGCACCGAAGGTGCGCGGGCACTCCGTCTTGGAGAACTCAGCGTTAGCGTAGCGTTTAGAGCTTAGCTCTAAAGGCGTGATAAAGATCAAAAAGCACCGAAGGTGCGCGGGC

>NZ_AP014724|1|1|306243-306377|CRISPRCasFinder
TAAAAGCGTGATAAAGATCAAAAAGCACCGAAGGTGCGCGGGC	ACTCCGTCTTGGAGAACTCAGCGTTAGCGTAGCGTTTAGAGCTTAGCTC
TAAAGGCGTGATAAAGATCAAAAAGCACCGAAGGTGCGCGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014724.1\|WP_060825181.1\|315898_316840_-\|multidrug-resistance-efflux-transporter-family-protein	unknown	unknown	gnl\|CDD\|379245
NZ_AP014724.1\|WP_060825176.1\|309588_310200_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_AP014724.1\|WP_060825171.1\|302475_303249_-\|TOBE-domain-containing-protein	unknown	unknown	gnl\|CDD\|182640
NZ_AP014724.1\|WP_060825178.1\|311942_312962_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_AP014724.1\|WP_060825180.1\|313835_315854_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_AP014724.1\|WP_082709124.1\|303934_304354_+\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_AP014724.1\|WP_060825172.1\|304510_305059_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381283
NZ_AP014724.1\|WP_060825173.1\|305052_306093_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238562
NZ_AP014724.1\|WP_041963049.1\|303513_303960_+\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|376576
NZ_AP014724.1\|WP_060825179.1\|312958_313747_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_AP014724.1\|WP_060825168.1\|299812_300595_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_AP014724.1\|WP_060825182.1\|316849_317989_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341027
NZ_AP014724.1\|WP_039673763.1\|310190_310904_+\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|223880
NZ_AP014724.1\|WP_060825175.1\|307454_309515_+\|TonB-dependent-receptor-plug-domain-containing-protein	unknown	unknown	gnl\|CDD\|238657
NZ_AP014724.1\|WP_060825166.1\|297211_297973_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_AP014724.1\|WP_060825177.1\|310918_311950_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|366009
NZ_AP014724.1\|WP_060825167.1\|298022_299801_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|224101
NZ_AP014724.1\|WP_060825170.1\|301708_302284_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381283
NZ_AP014724.1\|WP_060825174.1\|306412_307453_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238562
NZ_AP014724.1\|WP_060825169.1\|300684_301707_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238562

Protein	Function_ID	Function_description	E-value
NZ_AP014724.1\|WP_060825181.1\|315898_316840_-\|multidrug-resistance-efflux-transporter-family-protein	gnl\|CDD\|379245	pfam13536, EmrE, Putative multidrug resistance efflux transporter. This is a membrane protein family whose members are purported to be related to the DMT or Drug/Metabolite Transporter (DMT) Superfamily. Members are all uncharacterized.	4.40482e-90
NZ_AP014724.1\|WP_060825176.1\|309588_310200_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.17747e-22
NZ_AP014724.1\|WP_060825171.1\|302475_303249_-\|TOBE-domain-containing-protein	gnl\|CDD\|182640	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional.	3.37832e-53
NZ_AP014724.1\|WP_060825178.1\|311942_312962_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.02137e-65
NZ_AP014724.1\|WP_060825180.1\|313835_315854_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.01083e-71
NZ_AP014724.1\|WP_082709124.1\|303934_304354_+\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	4.27224e-32
NZ_AP014724.1\|WP_060825172.1\|304510_305059_+\|hypothetical-protein	gnl\|CDD\|381283	cd14774, TrHb2_HGbIV-like_O, hell's gate globin IV and similar truncated hemoglobins, group 2 (O). The M- and S families exhibit the canonical secondary structure of hemoglobins, a 3-over-3 alpha-helical sandwich structure (3/3 Mb-fold), built by eight alpha-helical segments. Truncated hemoglobins (TrHbs, 2/2Hb, or 2/2 globins) or the T family globins adopt a 2-on-2 alpha-helical sandwich structure, resulting from extensive and complex modifications of the canonical 3-on-3 alpha-helical sandwich that are distributed throughout the whole protein molecule. TrHbs are classified into three main groups based on their structural properties and named after Mycobacterium sp. genes glbN, glbO, and glbP: TrHb1s (N), TrHb2s (O) and TrHb3s (P).	1.18507e-49
NZ_AP014724.1\|WP_060825173.1\|305052_306093_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238562	cd01142, TroA_e, Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	1.19029e-57
NZ_AP014724.1\|WP_041963049.1\|303513_303960_+\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|376576	pfam01618, MotA_ExbB, MotA/TolQ/ExbB proton channel family. This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.	5.66227e-31
NZ_AP014724.1\|WP_060825179.1\|312958_313747_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	4.47606e-91
NZ_AP014724.1\|WP_060825168.1\|299812_300595_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.90245e-14
NZ_AP014724.1\|WP_060825182.1\|316849_317989_-\|MFS-transporter	gnl\|CDD\|341027	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily. This family is composed of Bacillus subtilis multidrug efflux protein YfmO, bacillibactin exporter YmfD/YmfE, uncharacterized MFS-type transporter YvmA, and similar proteins. YfmO acts to efflux copper or a copper complex, and could contribute to copper resistance. YmfD/YmfE is involved in secretion of bacillibactin. The YfmO-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.17784e-88
NZ_AP014724.1\|WP_039673763.1\|310190_310904_+\|energy-transducer-TonB	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	2.01153e-16
NZ_AP014724.1\|WP_060825175.1\|307454_309515_+\|TonB-dependent-receptor-plug-domain-containing-protein	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	2.11046e-23
NZ_AP014724.1\|WP_060825166.1\|297211_297973_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.18226e-16
NZ_AP014724.1\|WP_060825177.1\|310918_311950_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|366009	pfam00296, Bac_luciferase, Luciferase-like monooxygenase.	2.98057e-41
NZ_AP014724.1\|WP_060825167.1\|298022_299801_-\|radical-SAM-protein	gnl\|CDD\|224101	COG1180, PflA, Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones].	2.31447e-40
NZ_AP014724.1\|WP_060825170.1\|301708_302284_-\|hypothetical-protein	gnl\|CDD\|381283	cd14774, TrHb2_HGbIV-like_O, hell's gate globin IV and similar truncated hemoglobins, group 2 (O). The M- and S families exhibit the canonical secondary structure of hemoglobins, a 3-over-3 alpha-helical sandwich structure (3/3 Mb-fold), built by eight alpha-helical segments. Truncated hemoglobins (TrHbs, 2/2Hb, or 2/2 globins) or the T family globins adopt a 2-on-2 alpha-helical sandwich structure, resulting from extensive and complex modifications of the canonical 3-on-3 alpha-helical sandwich that are distributed throughout the whole protein molecule. TrHbs are classified into three main groups based on their structural properties and named after Mycobacterium sp. genes glbN, glbO, and glbP: TrHb1s (N), TrHb2s (O) and TrHb3s (P).	3.78255e-56
NZ_AP014724.1\|WP_060825174.1\|306412_307453_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238562	cd01142, TroA_e, Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	1.02084e-56
NZ_AP014724.1\|WP_060825169.1\|300684_301707_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238562	cd01142, TroA_e, Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	1.57425e-52

>NZ_AP014724.1|WP_060825173.1|305052_306093_+|ABC-transporter-substrate-binding-protein
MVTAMSFYRFSIRFLILFFGLGELLLARSIVDMSGQTLEVPDTISKLYASSPPSTYMLYTIDPSLIVGLNFDHAKGNNESSNMLDPRFTSLPVIGGLQGGANSINRETLLALHPDAIISWNTDASSGLAAYLFQSSHIATINVNLESIDDLARAYRFLGELLDKKERTEPLALYAQEVTRQTRALVERRVSKRPVVYYAEGTDGLASECDSSSHYEAIKVAGGINPHLCQPSGGKGMEKVTLEQVILYNPDVIIAQEKEFVQNVQNDPRWRFVAAVQNKRVYLVPKKPFNWIDRPPSFMRLLGLQWLTHVLYDEPNASEFETRMQEFYRLFLRIDLNQTQRQAILD
>NZ_AP014724.1|WP_060825172.1|304510_305059_+|hypothetical-protein
MCQSLENALIQDVKRSNASQKLRWSASKEHMRFPPIVKPEENFLKAVGEENLLRMVIHHHRLLQKSEIAYMYPIDEEAFMEGVHKAAHFFIQALGGGNVYTKAYGAPSMCKTHSPFAIDAHAREVWLRYYAQTLQEIAFPKAYLEQFWTWIETFSLRMINRAAPNTYAKRLFFHDVQKEYGW
>NZ_AP014724.1|WP_082709124.1|303934_304354_+|biopolymer-transporter-ExbD
MRRTAMASSLEVENEIADINMTPFVDIVLVILVIFMVTATFVTQGKIPLNLPQASSAEKQKEEQKPIVISLDKEGVFYYEDVAIEPDALEAKIAALDATDRTIILRSDAQTPFEYVVKIIDTCKKYRITSFAIQTADRR
>NZ_AP014724.1|WP_041963049.1|303513_303960_+|MotA/TolQ/ExbB-proton-channel-family-protein
MLSEKFLSFALLGIDPVLWVLVAMSVIALGVMIERALIFWQIEKYYKEMDAYTLKLSLDARLGILATFGNNAPFIGLFGTVLGIIQAFHVIGNNHAFDVQPIMQGISEALIATATGLFVAIPCVVAYNYFIRRAKTIMIKHEAYCHGK
>NZ_AP014724.1|WP_060825171.1|302475_303249_-|TOBE-domain-containing-protein
MLEARLWIKKSDKNFLGRGRIELLERIKHHGSIHAAAKAMKMSYKAAWDSVDAMNNLSDEPLVQKTSGGKGGGGTLLTAKGEEIIQAFHTLEQKHRQFLDLFSDSEDLGTIVKALSRLSLKLSARNQLTGIVTDIKEDTVNVLLEITIKDAEKLYASITHNSYADLGLCVGDSIIAILKASSVTLSKTKPTSTCENLLHGKVVQVLSDASGTEVTLELPSLSTITATIPHATFDSLGIKVGDEAYAFFKASQIIVGV
>NZ_AP014724.1|WP_060825170.1|301708_302284_-|hypothetical-protein
MPVTIDGVNVQLFSECDTKAPFPKADEKPRRGHPKIDVIYPEVYFPSNHIFLSLGEEAIRKLVQVHHDLIRESKIASLYPQDENEFQAAALKIEDFFVQMLGGETLYTSTQGHPKLRERHFPFEITEIGRDIWLMCFRKALKITRFPKELLPEIWEWVEALSMRLVNRRTTMDAMKRYPFESIRSYFDERS
>NZ_AP014724.1|WP_060825169.1|300684_301707_-|ABC-transporter-substrate-binding-protein
MRYLLALLALISFLSANADRTFSDINGKPVVLPENMTRVYGSAPPITFMLYVIDDRSLIGVNFPQTNQDNQNGDRFLSERFMKLPILGGWHGNNIPNLEAIVAAHPQVIITWDTPLLNEKTAKDIERISIPSLKVNIDDSTRYPEVFRMLGKVLQKEERANALADMAQTYLEELQHFVRSVPLAERTKVYYAEGDLGLQTECDVSFHSEPLALAGGNLVHKCVQNSVIGMQEVSFEQVLIYDPEVIIVQSPVFFKTVFTDPKWQMLKAVQNKRVYLVPKTPFNWTDRPPSFMRIIGAHWIASKLYPTRYPYSIQEKVRAFYRLFFQVELRDEELKTYFSL
>NZ_AP014724.1|WP_060825168.1|299812_300595_-|class-I-SAM-dependent-methyltransferase
MEFNHSFWDTMAERYPHYDDPAMQKDVQRVLAWAKSQGLDFNGRSLLDIGCGTGTVSIPLALEKARVTAIDLSRGMLDALKSDAEALKLRAYLTSYQSDWESFPLTQTFDIVLASMTPAISQESHIDKMLSATHAMGLYVGWGRYKTNAFLEALMQAHDAPEKMSGGCIKVADFMHYLDTKELTYSYEFFTTAWEETYTYDEAKTYAAEQLARKNLSPDERKVDAIIRDFMHEETVKIETQAEKGMVLFSKYPSSCPKHI
>NZ_AP014724.1|WP_060825167.1|298022_299801_-|radical-SAM-protein
MVCFICERRCHMEEGSIGECHRYECREGAIHERFAHTYLVTAPISAETMPVLHFHPRAKFLQISTTGCNFDCDGCISTVVAKEMDTDSKALHVLSPEQIVQKAQSLNCTGIAFLMNDPLASFFTFLEVCKLAKQAGLVTGCSSNGYFTLKTLDMLIPYLDFINIGLKGLSNAIYRSCHANSYKPVLRNIEYLVQKGVHVEVACIHKKGNESEVVAIAEHLATLSKSIPLQLMRFIPIDDAALEDEPSIQESETLYQTLKSRLDYVYLFNSPGSECIHTYCPACGALVFERDFYGPMGSKLRRIHHFKDGRCTKCAHTLAITGAPSQNVFDEEGFEGGYPMTRALEIVEGTLVALGVDNQHDVTRCWEELLADNGLKKLHVDIQNFDDYAATILFLARIVGKEENADALIAYMRNKIDTIVDALKEVTQRPRVYYVMGKPLFALEDTRLENQLVELVGGMSLNKTLVLDGRPGRKITREELLKLNPDVIFISSFLDSPLEAFYDACREEQIDVEAIKQHRVYTHPYPCFDFGSPRWILGLMYIADMLHPEIFHFDIHHEATLFYKQFYRQTFEASMLNRSFAKPSRAHRLNRL
>NZ_AP014724.1|WP_060825166.1|297211_297973_-|class-I-SAM-dependent-methyltransferase
MEEKNAVWEAMAKRYPRFYDDSMRKDVQFILNWCEDKGVCFENKSILDIGSGTGTIAIPLALKGARVTAVDVSSGMLKALREDAHAHGVHEAIQTHQSDWEAFADENTYDIVLASMTPAINSEEKIEKMMASSDTMGIYVGWGSYRTNLFVDALMQAHGIEDDCSSNGCFKTRQFMDRLEQKSMRYHHTFFETSWTEIYTPEEAKKYAYEQLQRREITPQESVIKRLLAANSSDQDKVHITTKAEKGIVVWYK
>NZ_AP014724.1|WP_060825174.1|306412_307453_+|ABC-transporter-substrate-binding-protein
MASKLYLWMIGACMGVSVSAYGVVDMADRNVTIDKTIHKVYAPSPYGSYALYAMAPSMMSGWVMSIADKNKPYLDPIARDLPVLGSISGQGQTSAIESMLSQKPDLILMWSASPVSPMSQTNQKLEQLGVPYVYAVAEDMNAYPKVFRFLGEVLDKRERGEKLATLMQTVLDDVKTAVDKATYKPKVYYAEGTDGLSTECDDSIHVQILKLLGDVNVHQCHTSNHKGFEKVTLEQILLYDPDVIITPEEIFWNSVQNHPQWKEVRAVREGRVYLIPSTPFNWFDRPPSFMRFIGLQWLANLLYPNEYPIDIQEETKRFYANFMHVSLDDASLNVILSPKSLAKKKE
>NZ_AP014724.1|WP_060825175.1|307454_309515_+|TonB-dependent-receptor-plug-domain-containing-protein
MSVFKPRFGSLVVASCLFPLSLVAADTVYQLDPVSTTENTEGTPRVVREDLKPDSIVNPNKVESSSQAGVEIFTQEDIRDLAPKDMFDLLSKATGVDVTYHGRKSPYFVNVRGGGSLTYIIDGAILPSTANKILQKIPMNAIEEIQIVRGSSSLTLGPSINIGSSNSGSGVNVGYIIIKTKQPKKTEAILQGSVEKTESFPTANKESLYLGTRIDNEEGSAFVGGLVSGMHRDSTDRYFDGQTADARMANAGFSYGKLSGKIMAYKDEGRFEMQRGVTVTGALDNSKWYYDPITTEIVSGDATVQWNENHATLASLFSTRYEHTEYSNESFATTATGVAKPYWEETEGVSLRHNIRYGDTTVMLGVQSTDDEGFGANNSASYNRFKVNVLGWSGSAEQKLFDGALILDGGYREDQKHIDYSSTSASKNSANNDEDMAPAKIYAFGAKWNITSIYALSARYFNADQGTMGDFDVKAQTGTLHAEKQERFETSLEANYDKMFTPMFTWFKVKIDNEKIASNTTYVQNGQTYYYYTESDTDRDGIELLLKGYFSTGTSYKASYTRLLNYDSISSTGVTTNNIGGSNPRDLYTLQVTQEWDKYRANVSLQKESGWHTSTSAMGTAYDVNLGDFTRVDANIMRDFKTAGNTTTTLMLYARNITDEKYATRYTTGYYYDRGRVVGLDVTLKY
>NZ_AP014724.1|WP_060825176.1|309588_310200_+|class-I-SAM-dependent-methyltransferase
MDVEHYDRQSRTVKKPLYTYYAQKIKDQTRMIEGKCLDVGACGGYLGLELAKMTNLHVTFFDLNAEALEKAALHLVEDGLEERGATLVGDVHAIPLEDETMDLIISRGSMPFWEDPALALQEIYRILKKGGTTFVGGGKGTPEIKAQIIENMLAEGQEVDLEAMDKMHGDGMKRDYDALLKSKGIENFVIHRAQDGIWIQMWK
>NZ_AP014724.1|WP_039673763.1|310190_310904_+|energy-transducer-TonB
MEISVSKKRTFSSIAVFGTVLVHACLVYALAAMPKVFESAEEKADIVHISLIDDEKPSAPPKREEPQPPIEQPKIPNEVPKEQPKPQKKPVVAQKPIAKTAPSPEPSPIVEETVTPPPPSSHQALSALEQPSQASRASQANEDALSRYLAKVRKAIQANLQYPMMAKKMGIEGETTVQFSIQADGTVDKRTLKVLHSSGKKVLDANALNAVIDASPFEKPPQEELFISVPVVFKLRT
>NZ_AP014724.1|WP_060825177.1|310918_311950_+|LLM-class-flavin-dependent-oxidoreductase
MKWGIFCLFERYETDACEAIHAQMRLVEQAEKEGLEEVWFGEHHFNDFSICPSPTVLLANACARTQTIRLGCAGFLAPFYDAIRLAEDAAMLDILSRGRFNLGLAKGAFAPDSKHFNTTTEQLRPKLLECAQAVDSLLNTGAHPVSFHGDFFDFTEVDVEPKTLQSSIPTYIATFASEETIAFAARKGWGLMLSQGVDLDECERVSRYYASIAGYEPEIVLLRTFYVAQSYEEAFAKARPAIDHFVKSMRAASSFNKSPQFDQTRYQALIQERNVFFDGQKFFENGIIGDAQRCIDTCLTIQKRFPKVHVALKLLGTNENENARLLHDFTRLVRPFVDKAHHG
>NZ_AP014724.1|WP_060825178.1|311942_312962_+|iron-ABC-transporter-permease
MVKTSLLFAIAFVLLIASFFASMCMGRYEIDFSTLAHFLSWKWFDIGAMPRDATLLSNILFDIRLPRIVAVILVGAALAVSGGAFQAMFVNPLVSPGILGVLAGSSFGAALGIMISDSWIGVQLFSFAFGFLAVMCALLIARIYGKNAPTTILLVLGGVISSALFSALLSLVKYMADPYNKLPAIVYWLMGSFSAVDMKTLLNVSVPLVLSMIVLSLMGKYLNILSLGDDDAKALGVRVSLVRNTAILLATLLSALTVVVAGMIGWVGLIIPHIARFMVGADNRVMLPMCLLLGGIFLLWVDTLCRTVLSVEIPVGIVTALVGIPIFVLALKNAKKGFA
>NZ_AP014724.1|WP_060825179.1|312958_313747_+|ABC-transporter-ATP-binding-protein
MSFYEARNIHFSYQQKKVLDGVTVSIPKGSIVSLLGANGAGKSTLMKILLGLLSPDQGEVILEEKNLADYSIKKRAEHIAYVPQSTKIVFAFSALQIVLMGRIAFEAWFAKASSEHDKQVCYAAMERLGIAHLAERNYQTLSGGEKQLVLIARALAQGAKILVMDEPISGLDYGNQLRLLEAILTLCKEGYTFLKSTHFPEHALMLEGQTYALKDGKILANGDTKSVVTEELINTLYQTNITLFTTHFGYKACVPNFLNQRI
>NZ_AP014724.1|WP_060825180.1|313835_315854_+|TonB-dependent-receptor
MRKQMCLGVMLSLVASSMLLAETFELGKIEVTSEKDISANPSVEVVTSETIKETDAKTVVDALQSTPGVYTDYTGARGESKVRVRGFSSNRVPIYIDGIPIYVPYDHNIDLGRFKTYDIGEIDVSKGYVSPMYGANTMGGAINLITKQPTKELEGEVGVGAFSGDGYEEYATMGTKQELYYGLISVSNVSRDYYKISSDYDPAGHQEGHKRSNSESGDKKLNLKVGYTPNSTDEYSFNYIVQRGDKEQPWYASAQGSTGGGVYNRNWDWKDWDKTSYYIITKTAIGEHFLKTRWYYDEFYNKILFKGTPQTSAQNTVTEISEYDDNTFGGIIEGDIKIADNHLLKLSVSQKYDNHKDISSKSSGADLKDESKTLSLGAEYSWQISDKLTWTLGGSYDKNEVTQAEYRNNAGTRIAGEFPKYDSDAFNPQTILSYQATKDLSFYGSISQKSNMPTLKDRYSTRFGDYILNPNLDAERSTTYEIGTDWAFVEDHHAKVALFYTKTKDYIASVSGLTNTNSTLGCTGTNCKQMQNFDQEEHKGAEVSLNSQWSELLRSTVSYTYIDATIEDSKTANAKYTTDTPKHSYYASLTYSPIHSVDITPIVRHEGKRYSTVSGSEESSAYTVADIRVAYRPVKDLELAIGIKNLFDEYYYYNNGYAQEGRNYYANARYTF
>NZ_AP014724.1|WP_060825181.1|315898_316840_-|multidrug-resistance-efflux-transporter-family-protein
MPALLFLGMLSALFFSTTFLLNRMMSLAHGHWVWSASLRYFFMIVMVALVIALWEGVPTLKGVLALFRRFWRFWIVAGSIGFGGFYAFLCYAADFAQGWVVATTWQMTVIASLIVLIAFGKRFAKRIWFFCALILLGVTLVNLASITHFRWDELLKGFLPVLAAAFCYPIGNQLVWEARHQTHSWIPHIDDPLMHNAFHKVLLLSLGSVPFWLVLIVCATPPPPSISQVANTAAVAFFSGIVATTLFLYARSRAKTSAEIAAVDATQAAEVIFALIGEVLFLEAPMPPWSAFLGIGLVFIGLFFFIVFQKEES
>NZ_AP014724.1|WP_060825182.1|316849_317989_-|MFS-transporter
MYMRSSYAFAQKITAFSTFLAFMGMGVVDPILPDIAKQLGATAWQVELLFSTYILMMAFVMIPAGMLAGKFGDKKIMAFGLFVVALFALLCASAGNITALALFRAGWGYGNAHFFATALILLIALSPDYHKAVGLFEGAIGFGIASGPLLGGFVGHYSWRYPFLITGCLSLIAFLLVLVFVQEPPKKNTARSAGWSDLKALFCDVKFLKISIGALFYYYAFFVVLAYSPLVVPMNPIEIGLLFFGWGVALALGSIVLSDLLERRWRVEKIIPPTLGAFSLVLLALMASDSLTRMAIFIVISGLLSGIINSLLTTYVMQSRFERNIVSGGYNFLRWSGAAIAPIASGIIGEHFGAKLPYLLAALGCGIAFYCIVRSRRHG

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Crispr_ID: NZ_AP014724_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014724_2

971979-972107

Orphan

Consensus_repeat	Method
AGCAAAGCTCCAAAGACTACGCTAACGCTGAGTTTTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014724_2

>merge|NZ_AP014724|2|971979-972107|CRISPRCasFinder
AGCAAAGCTCCAAAGACTACGCTAACGCTGAGTTTTGCTCGGCGCAACGCCCGCGCACCTTCGGTGCTTTGTGCCTTTGTCACGCCTTTAGAGCAAAGCTCTAAAGACTACGCTAACGCTGAGTTTTGC

>NZ_AP014724|2|2|971979-972107|CRISPRCasFinder
AGCAAAGCTCCAAAGACTACGCTAACGCTGAGTTTTGC	TCGGCGCAACGCCCGCGCACCTTCGGTGCTTTGTGCCTTTGTCACGCCTTTAG
AGCAAAGCTCTAAAGACTACGCTAACGCTGAGTTTTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014724.1\|WP_060825665.1\|976838_978233_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224157
NZ_AP014724.1\|WP_060825661.1\|968898_970227_-\|potassium-transporter	unknown	unknown	gnl\|CDD\|273349
NZ_AP014724.1\|WP_060825669.1\|983000_983282_+\|flagellar-biosynthesis-protein-FlgE	unknown	unknown	gnl\|CDD\|224663
NZ_AP014724.1\|WP_060825658.1\|966000_966579_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_AP014724.1\|WP_060825656.1\|963864_964899_+\|XdhC-family-protein	unknown	unknown	gnl\|CDD\|379212
NZ_AP014724.1\|WP_060825660.1\|968236_968902_-\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643
NZ_AP014724.1\|WP_041963307.1\|966592_967669_-\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NZ_AP014724.1\|WP_060825662.1\|972244_974209_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|226664
NZ_AP014724.1\|WP_060825657.1\|964901_966008_+\|NTP-transferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|133025
NZ_AP014724.1\|WP_039672852.1\|970223_970925_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_AP014724.1\|WP_060825664.1\|974828_976721_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|223953
NZ_AP014724.1\|WP_060825667.1\|981223_982243_+\|response-regulator	unknown	unknown	gnl\|CDD\|225971
NZ_AP014724.1\|WP_060825668.1\|982239_982932_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NZ_AP014724.1\|WP_060825655.1\|962566_963868_+\|phenylacetate--CoA-ligase-family-protein	unknown	unknown	gnl\|CDD\|224458
NZ_AP014724.1\|WP_060825666.1\|978327_981231_+\|response-regulator	unknown	unknown	gnl\|CDD\|236848
NZ_AP014724.1\|WP_060825671.1\|984358_986602_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_AP014724.1\|WP_060825663.1\|974208_974769_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014724.1\|WP_060825659.1\|967781_968147_-\|methionine-R-sulfoxide-reductase	unknown	unknown	gnl\|CDD\|235499
NZ_AP014724.1\|WP_039672850.1\|970924_971944_-\|DUF4118-domain-containing-protein	unknown	unknown	gnl\|CDD\|225115
NZ_AP014724.1\|WP_060825670.1\|983316_984354_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238562

Protein	Function_ID	Function_description	E-value
NZ_AP014724.1\|WP_060825661.1\|968898_970227_-\|potassium-transporter	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	1.35989e-87
NZ_AP014724.1\|WP_060825669.1\|983000_983282_+\|flagellar-biosynthesis-protein-FlgE	gnl\|CDD\|224663	COG1749, FlgE, Flagellar hook protein FlgE [Cell motility and secretion].	4.46047e-05
NZ_AP014724.1\|WP_060825658.1\|966000_966579_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	4.04262e-58
NZ_AP014724.1\|WP_060825656.1\|963864_964899_+\|XdhC-family-protein	gnl\|CDD\|379212	pfam13478, XdhC_C, XdhC Rossmann domain. This entry is the rossmann domain found in the Xanthine dehydrogenase accessory protein.	3.85456e-52
NZ_AP014724.1\|WP_060825660.1\|968236_968902_-\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	8.72413e-39
NZ_AP014724.1\|WP_041963307.1\|966592_967669_-\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	3.98465e-63
NZ_AP014724.1\|WP_060825662.1\|972244_974209_+\|TonB-dependent-receptor	gnl\|CDD\|226664	COG4206, BtuB, Outer membrane cobalamin receptor protein [Coenzyme metabolism].	2.70051e-75
NZ_AP014724.1\|WP_060825657.1\|964901_966008_+\|NTP-transferase-domain-containing-protein	gnl\|CDD\|133025	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	1.53063e-47
NZ_AP014724.1\|WP_039672852.1\|970223_970925_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.77631e-74
NZ_AP014724.1\|WP_060825664.1\|974828_976721_+\|AMP-binding-protein	gnl\|CDD\|223953	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism].	8.79965e-152
NZ_AP014724.1\|WP_060825667.1\|981223_982243_+\|response-regulator	gnl\|CDD\|225971	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms].	1.18458e-107
NZ_AP014724.1\|WP_060825668.1\|982239_982932_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	5.55878e-17
NZ_AP014724.1\|WP_060825655.1\|962566_963868_+\|phenylacetate--CoA-ligase-family-protein	gnl\|CDD\|224458	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism].	2.34095e-64
NZ_AP014724.1\|WP_060825666.1\|978327_981231_+\|response-regulator	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	3.36012e-108
NZ_AP014724.1\|WP_060825671.1\|984358_986602_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.19654e-37
NZ_AP014724.1\|WP_060825665.1\|976838_978233_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	1.68418e-105
NZ_AP014724.1\|WP_060825659.1\|967781_968147_-\|methionine-R-sulfoxide-reductase	gnl\|CDD\|235499	PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A protein; Provisional.	2.99337e-79
NZ_AP014724.1\|WP_039672850.1\|970924_971944_-\|DUF4118-domain-containing-protein	gnl\|CDD\|225115	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].	1.29334e-55
NZ_AP014724.1\|WP_060825670.1\|983316_984354_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238562	cd01142, TroA_e, Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	4.56879e-62

>NZ_AP014724.1|WP_039672850.1|970924_971944_-|DUF4118-domain-containing-protein
MFFDSRYTLPTLAALAFVTSICLLFYDSLELINIALIHFIPIIVIALEGNYARTTLIASISVLLFNYLYVPPVFTFNVYDIIHVWTFAIFLFFGYVITWQAKKIKRNEMKEILLNTISHDLKTPLSSILGSITLLLEDQKLSPETQKTLLNDIKNSSDKMNRLINNLLDNARLKDKKLELKMEWCDLEDLLGVALKDFDDAHIKRSLHIFIDPTLPLYWGDYNLLGRLFANLLDNAFKYSNQNKQIYIKLKQEDDRIRILFFNESNPLNERTLETIFDKFYRAEDNQEISGSGIGLFICQSIVQAHRGEIRAYNKDNGICFEITLPILKYPTQLHNEAE
>NZ_AP014724.1|WP_039672852.1|970223_970925_-|response-regulator-transcription-factor
MANECILIVEDDEAIAKLLTISLQEYGFKSKHAHDLASAKRDVLSLNPLLVILDLGLPDGDGKHLIAKIRKQSKIPIIVLSARNDEKEIIAALDLGADDYVTKPFSTSELLARIRSTLRRIHPEPPHAILTCKELTIDFNQKQVTLQGALLKLTPTEYALLSYMMKNADKVLPHRQILKEVWGVGYQNEMQYLRTYINSLRKKIEKNSTYPEYISTESSIGYRFSSHGTKESE
>NZ_AP014724.1|WP_060825661.1|968898_970227_-|potassium-transporter
MNQKTLKIIFLSYLLVVLAGAIALMLPFAHHGKLAFIDALFTATSATCVTGLIVKITPESFSIFGQAILVLLMQIGGVGYMSIVSLFYLFMRKSLNIHEKNLAKESLNYANHDIPIFLRKVFLFTFIIELAGTLILALRFSTHMSIPKALWQGFFHSVAAFNNAGFSLFRDNLMGYQTDATILLTIGALIILGGLGYLVLVELHAKLMHQRFMLSAHTKITLVGTVLLLLLGMLLLGAIEWNNPSFFGHLSLEHRFLNSFFLSVNFRTSGFNSLDLSQLSDTSLFCSTIFMMIGGGAGSTAGGIKITTVAVLIIATLHTIKISNQPPHAFKRTISAEVIHRSSAIIFVASFIVILATVVLVQTQHSTFLPTLFEVVSAFCTVGVSVGNGDVLSLSQTFDLVGKSLVIALMLIGRMGIFAVGFLIVGKEKIKHVQYPEGRIIL
>NZ_AP014724.1|WP_060825660.1|968236_968902_-|TrkA-family-potassium-uptake-protein
MKTYAVIGLGKFGFHIAKGLAEQGMDIIAIDNDAHKIQDISEFIEDAVVLDSTDIRALKEAGVVGLDTVIISIGENIEASILTLMALKELENKTIIAKAITLTHGEILARLGAFKVIYPERESAKKLVENLVGNVVIDQIDFSSTIKIAKLIATRSLIGKTIGEIETEFENEIHLIACKTRDNWQFSLEKSYKIREGDMLSFIGKKAFIEKLRSLAKHESA
>NZ_AP014724.1|WP_060825659.1|967781_968147_-|methionine-R-sulfoxide-reductase
MNLMPLTPEEERVIVHKGTEMPYSGAYNDFYDEGVYLCKRCLTPLFRSQDKFRSGCGWPSFDDEIPQAIQREKDRDGRRTEILCNACKAHLGHVFEDEGFTPKNTRHCVNSIALVFQAQKK
>NZ_AP014724.1|WP_041963307.1|966592_967669_-|HlyC/CorC-family-transporter
MTLLIVYLSLALFISFLCSVLEAVLLSSTNSYIETLPKETNENAIVLLKELKNNIDKPISSILTFNTFAHTMGAAGVGAQAQILFGEEWQTAVAFAVTLLILYVSEIIPKTFGALYWKKLLIPSAYMISFLITITTPFTWVSSLLTNYISRNKKHQSNYSRDEIMAVVAMGEKEGSILSKESDLIENLLKLKNIKAKDIMTPRSVVFALPATTTIEDAIEDDRMYIHSRIPIFGETLDDVVGIVFNQRILEESVEDHDSTTLEQISYEVHMVSENLPVPNLIDQFVKRKTHLFVVFDSYGQTAGVVTLEDAIETLLGVEIVDEMDEVEDMQLFAKDRSKKFQDRMKVERKKLEKAKVG
>NZ_AP014724.1|WP_060825658.1|966000_966579_+|histidine-phosphatase-family-protein
MVDTVYLLRHGHIDNGDEKRYLGQTDLGLDALGIEQAYALREAFQSIRIDAVYTSPLKRCVKTAHIISQEYRIVEAFREIDMGAWENKTMAEIRSHDPESYAKRGEDLEYFTPPCGENFHAVALRAKEAFDAITYEAIHSSVIIVAHAGVNRVLLSTLLNLPIQEMMRIDQPYACVNRLTRHQGTWRYARGF
>NZ_AP014724.1|WP_060825657.1|964901_966008_+|NTP-transferase-domain-containing-protein
MAKDTVAALIIAAGYSSRMHDFKPLLSFEKTNAIKRLVQTYETFGIEHIYVVVGYLKEEIIATLRGYNVHIVYNEAFDQGMFSSIQKGIKAMDETVEAFYMNPVDIPLIKTQTLERLYEAYVREKKGVVYPVFLGRKGHPPLIDRKYQNAILSSKGEGGLKNVLETLEHDALHVDVCDQSILMDMDEKEDYFALLRYDAMNVPTKEECLAIMRLNDVPEPIIKHCEAVGKTVLALLNEISLCHLVFDKNALLAAAYLHDIARQEKDHAKVGAEKLCAMGYETIGDMIATHMDITVDRKAPLSANELLFLADKLVCETEVCGYEKRFEKALKKCEGNLEAQRHIAQRLEAVKMIIAKIEQCTCKVFAYG
>NZ_AP014724.1|WP_060825656.1|963864_964899_+|XdhC-family-protein
MKTIVEHIIESLNEQHEIVTATILHKSGSAPREAGTKMVIRKDSSIEGTIGGGTLEAMAIRLAPEIFQSKRSAIEDIELTDEDAKAAGMVCGGEVSVLLEHIDALDIPQFNIYHKAQELKASGIDFIMITNITQSSKRIGGKHKWICTQNELFGADDNEVQSIAKELREHFYRIKFHLYVGKSRYMIEPFYAMDRLYIIGAGHVSQQIALLSKSLGFYTVVLDDREAFANKERFASADEIHVVSSSYEDLAQTVGIPPNSYIVIVTRGVDKVVLEQALRMNAKYIGMIGSKTKRNYVYDLLLHEGFSQQELDAVHCPIGVSINAQTPEEIAISIVAELTLVKRA
>NZ_AP014724.1|WP_060825655.1|962566_963868_+|phenylacetate--CoA-ligase-family-protein
MNVTPLESWIQERMHLARPSQEALRAYQLEKVQTTLRYAQSKSRFYRERLGEIDLDAIDSFKAFETIAFTTPDDIRRNAYDFLCVPTHEIERIVTLNTSGTTGDEKRLFFTHEDLETTINFFHYGMRCLVDERDKVMVLLPGPSFASIGDLLKKALQRSGIECIVHGVLDDVEAAAACIFQNGITAIVGIPMQVSYLARMKKELFDTHIKKVLLSTDYVADALVKSLSRNGTCQVFNHYGMTEMGYGGGVECACLSGYHLRENDLYFEIVDPMTGKVVEDGTYGEVVFTTLNRQAMPLIRYKTGDRARFLVEPCACGTFLRRMEKVRGRIENTLSVEGHEITLRDLDEIFLAYKSLMDYRVECYDPNRLHVRLVLDKNTDAKAFQNALKQELHVRFQSKFDFEIEIEEDDRSSKITRSMIKRKIHDCRQGAKR
>NZ_AP014724.1|WP_060825662.1|972244_974209_+|TonB-dependent-receptor
MKKLKGFRGKYFSLAAILALNATIALAQEGQSVVDNEKQLSTSKAEASSETTELLEETSAPVLVVSKKIKAQKSEVYTASKSLVSATNVTDNVSIITSEELSLKGISTVVEALNTIPGISFTANGGQGKSSSLFIQGMGNKYTLLMVDGVRYNDPSNTSGADFSHLLIQDIERIEVIKGAQSGIWGADAAAGVVNIITKKAQSGTHASAGVEIGSYGYQNVHTSVSHKTDKFDVMLTVQRVLEDGFSAYAPHGEDIDRFEDDPYRNTTINLKAGYWIDERNRIEAGYHDINAFNHYDGSDPLTYAMDPNSIERSDFRQRSGYVSYHYLIADHTIETTLSQSNFTKKNLDATWGLNDYEGKVPSIEIKDTWKYADNANMVLGTSYEKRELNYTSIGDSEKERDEHSKALFCNNTNRFGNIVLNEALRYDSFSAFDDKATGKIGAKYLVNDQCDVYANYATAYKTPSMLDMINPWGTANFTLKPETIQSFNAGIRYAGFNMNFFRNEIEDLISWVGYGNVNIDGTSVFKGVELSYEHQLFQTLLAGANYTYVDAKDKNDARLPNVPRYQTTFYTTYMPVKQVAWTLNGTYVGSRQDGFTTHETGNYFVANTKMTYHIDKTWDVYVKVNNLFDRYYQTVYGYASAERSYYAGVEAKF
>NZ_AP014724.1|WP_060825663.1|974208_974769_+|hypothetical-protein
MKLNLRPYLWYKLLNSLFFGVTVGSVFVLYTPLEPSVFSLGGIALAIGLLVVAKFYEKMMNLLVFYRVSLLVEVVTLWSVLAFLAFKMSYLNALFIYLSYQTIFVFGGYLIRIETLALKRTSLLSLADVMKQKGYLIGMIVAYLFYKALEWCGTTQKIEQVYALHVLLLVLQIAIIVSVLKSFRQR
>NZ_AP014724.1|WP_060825664.1|974828_976721_+|AMP-binding-protein
MHRADNTLFHLFLSVCERYKDHKAFIYNVADQEFEVTYAKLFDDVLVLSRAFKAKKIDKNSKVMLLCDNRYEWIVTDMALLSLGAISIPRGCDTPTQELAFILSHSEADFLIVENEKTYTQHEAMLKNQELKAIFIVEAPKVHSLLNHLYSYNDLLKDKTVYQDDIDAFKKQKERLSETDTLTLIYTSGTTGTPKGVVLSHQNVMYNVRELPPLIALQSEDVWVSILPSWHIFERAAEYVAMSHGCCIVYSTLKTFAADLERYKPTIVATVPRLWESMYTKINTTLEKKDPKKANIFKKLVAISSAYNRADRILKDQLPCFKKPSFWLTCRTKIPAFFQRLLLALPNRFAKKKLSLVQEKFGGRLRLAVSGGGTLSDFLDEWIDAIGIRIVNAYGMSECAPTIAGRSVLCDTFSTLGPVVPRTQIRIVSKDGVYLGAGEVGEIWVKGEQVMSGYYKNPEENAKSFSEEGFFKTGDLGKLTLKNELVITGRSKEIIVLANGENVDPSRIESTLSMLPFITDTILVGHAKKGLGALIVPDFEKLKVYVAEHFDKAVQTIEQVMEDKQIVAKLKGEMNELLHHTKGFKPFETLQNIHFLDKEFTVGEELTNTLKKKRHVIEKKYQEIIDKFIH
>NZ_AP014724.1|WP_060825665.1|976838_978233_+|MBL-fold-metallo-hydrolase
MAKVTSYGAASTVTGSCHLLDVSSVRILIDCGMIQGAQWRDNYAPLGFDAASIDYLILTHAHNDHIGRVPKLVKEGFRGEIIATEATLDIAYIMLLDSAALLEEEYQTQLKKALRRGEENSVQEPLYTKEHVEMVFARKMRRVAYEQTIALAPFLKITLHNAGHIMGSAYVNVEYEEEDVRKSIIFSGDLGSKNRLLLNALTPASHAQTLYLESTYGDREHRSLEESIREFKEAITQTLDDGGCVVIPSFALERTQEILWLLHQMHQEGSLRNCRVFLDSPLAIEATKIYRKYPAQLNQPVGLHVSLGDDPFSFPELALTPKKKDSIEINDVQKRAIIIAGSGMCTGGRVLHHLKQRIWNPKNAVIFVGFQVQGTLGREIIDHEPFVRIYGEDIKVRAKIHTINGFSAHADRADMSAWIAPMEGLHTIYLIHGEIDKMELFKAYLHERTQAKIHIVKPAETIYI
>NZ_AP014724.1|WP_060825666.1|978327_981231_+|response-regulator
MKTFLHKVSLLQSLIVMIVIALIVPIPVATLIYVNSTFPSKQEEQNTLNTKKFDFSSAIFAESLWNYYPELGQTMLDQLLLDQNIQFVRVRDNDEKLFLMWELPQQNPADTLVLRKVLKKDDVAIGTLEMGFKRIDLIESIVKDMRLFGSMILLQILFLVSVISLIYYYKVLKPIKRLVAHSHLLAAQKLDEPFEWEENDEIGLLGHSLDQTRIKLQHLFKVLQKENERLDEKVKQRTQELEDASRYKSEFLANMSHEIRTPMNAVMGMSHLLGKTAMSPVQQNYVSKIKEASSLLLRIINDILDFSKIEAGKMDVEVVAFDLHKELKKSCSIFSVLAKEKNIDFQCDFIETNRFFRGDPHKIMQIVNNFLSNAIKFTSEGGVFLSVCENVLDEERSSLSFSVKDSGIGIAKEKQNLLFQAFSQVDASVTRKHGGTGLGLYICAQLAQMMHAKIAFTSEEGRGSLFAFTIPLGVAKGIDLHSDSSNERSSPLHILLIEDYKKTADYFNELVRSFGFFMSVMKSKDAIIEALQRAQSPYDVLVIDHELSRGKNGLALYASLLKETPVALPPTIMFSMNDDAAFQTNVKASGIHVLLKKPINASMLYDELVSLCTMHTKTPLFDPSKIDLSKKRILVVEDNEINLDVAVYLLKETHAQVDTARNGLEAVEKLQECSTAYDLILMDVQMPIMDGFEATRMIRKELDILTPIVAMTANVMVQDIEKCLKAGMDAHIGKPFEVEDFYGTLLETLHVSSTVSPKHQTAGKAKYEHVFDPKEAIARLGGNETLWRKILSRFYETFTHMPQKIASLSSGNDRAMFVDYLHTQKGLCGSLGLFALEHALLEAETLVKTDRPIEPSCFDNIIVAHRNAAPFVNKEYEKFVNNTALRNPSSIENEAGILEQKQHLQALHEALEQSNVSKVHALLETLTLDADLKEDERFTKLSLACKQFDFDAALAYLQELRQEKEHG
>NZ_AP014724.1|WP_060825667.1|981223_982243_+|response-regulator
MAKVLVIEDTPEYIEMLTSLLSDYEVYAAKEGKKGLALAESIEPDLILLDINMPLMTGYEVCRRLKQMQKTRAIPVIFLTANEGLEYEEIGFNVGAVDYISKPFNTAILRARVKTHVDLYRLQSSLQQQVDEQTKEIQKLNHEITYISASIAELKSKETGQHLRRVAEFCYLFCKFLGKDEAECEKIKMAAVLHDIGKVGISDEILNKPSKLDEDEWVVMKTHSMLGYEMLADSEFEMMRLAAVIALEHHERWDGEGYPYGKKGEEISLVGRICAVADVFDSLLDKRVYKEPWEEKAVKEYFEMASGTQFDPKIATLLLENFDMFIYTWKALQTGKIAL
>NZ_AP014724.1|WP_060825668.1|982239_982932_+|transporter-substrate-binding-domain-containing-protein
MMRWIVLLCTLFLTLNAESFRVYSEYNPPFNYKNADGNVEGPSVWLLQELFRKTGQTIVDGQINVVPWSRGYHEVLEHPRTVLFSAARTQEREALFAWVGPIGKLRIGVIAKKERHVNLQALRGHNLGKIGTVHDSGAEQLLLKEGFTLEDFDRFSNIDSQLRKLREDRLDAVAFSVDAMFYTLQATGCSLDAYEIVSLLRENDLYFAFHKDTDPALIERLNQTLKAIRP
>NZ_AP014724.1|WP_060825669.1|983000_983282_+|flagellar-biosynthesis-protein-FlgE
MQVNANAMNAMSTWMNNSANNVANVNTQTYQATQTTLSEEANSVVANSSKTENNTDLTTEFTDQIALEAGFEANTKPIQTEDEMIGSLLDMKA
>NZ_AP014724.1|WP_060825670.1|983316_984354_-|ABC-transporter-substrate-binding-protein
MKKLYVTLLFLHAVSIVAFGSEKALECAKPLKDYLGKEICIPETIDKIVITCYGGASQEITLFNNAHLIAAQPSVSHFPQFLRLFPTLKEIPSVGSFSDVNIEELIKINPSIVFVGATSLHTNENIAEIGFSVYTLGIGRHDIASLLEELLHLGSIFHEEQKAKMLVDYWQKSLSMISQHIKNVEPKDKKRILYGVSNGKSNLEAKRNWNDEFIEAAGGINVTTEVLIKGETSLESLIVWNPDVIITTRSPSNKNNAEALRKNAALQHVNAVRTHHVYEGPVGTSWWDRPSPESILGIIWLAKILYPEETADIDLKQETLYFYATFYGYRLSDEEYADFFERHRE
>NZ_AP014724.1|WP_060825671.1|984358_986602_-|TonB-dependent-receptor
MSEYVSGNTYAITSQNEVIKQLPWKLSVYAIIVLAVSSCTLEAAEYVLPEVNVEGKQPVDKTTDTVIGTKNVTTSSDIQLFDSAELISPYKAISREPGVDIRFNDPFGMDITHKIRGKSDRNIGETLEGLPLKGIGPGGGLSSMMDIENIESITVEKGAVKADSGFGYGSDNGMVDMHMKAPSNELGVALKQSFGSDDFRKTYMRIDSGEIADTAKFFFSASTSDADKWKGEGKGLDRQNFEFGAASASDQAVKWELYGIYNDQQSHNYKGLTYEQSKNLSLYKKLDYDTTHPLSSSYYDYNRLDYETYAIFGKVEIPLSNDDSLNFRPYFLNDKGTSWSSNTSGITQWLVDHDTYGMILEYAHKIEDGKIKVGYWFQEDEPPGPPTTQKLRYLGTNAFNKWSRLVDPEDNSLFHAPYIAVEKAFDNTIVEAGVKYLWWSTPTLTAYNTTGIGDVSADEAFSKATNKLFTLNSETYGIFLPNIGATHYLDDHSYLRANYGRNYNTPQYGLGGSILNIYNSTHNKALVQQMWSDLKPEESDNFDVGYGYATGAWKIDTTLFFSSVKNVAGNFYDPDINLVYSQNIAKARSFGAELASSYHLLENLDLTMALTYNQYEFTEDVQTAASKIIHSKGKQIPDVPQWFGNISAVYDLYGYKLSPILRYLGKRYAEIENKYSVDPYWLLDFSINKEYALGGKNKLEFSLSAINVLNKEYISTISTEDTSDSTSNATYIVGAPRSVFFSIGYKY

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Crispr_ID: NZ_AP014724_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014724_3

1207256-1207392

Orphan

Consensus_repeat	Method
AACCCAGTGTTAACGTAGCTTTTAGAGCTTAGCTTTAAAAGCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014724_3

>merge|NZ_AP014724|3|1207256-1207392|CRISPRCasFinder
AACCCAGTGTTAACGTAGCTTTTAGAGCTTAGCTTTAAAAGCGTGTTAAAGATAAAAAAGCACCGAAAGGTGCGTGGGCGTTGCGTCTGGCAAAACCCAGTGTTAACGTAGCTTTTAGAGCTTAGCTTTAAAAGCGT

>NZ_AP014724|3|3|1207256-1207392|CRISPRCasFinder
AACCCAGTGTTAACGTAGCTTTTAGAGCTTAGCTTTAAAAGCGT	GTTAAAGATAAAAAAGCACCGAAAGGTGCGTGGGCGTTGCGTCTGGCAA
AACCCAGTGTTAACGTAGCTTTTAGAGCTTAGCTTTAAAAGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014724.1\|WP_041961739.1\|1211342_1211993_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_AP014724.1\|WP_060825820.1\|1204703_1205753_-\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|234565
NZ_AP014724.1\|WP_060825821.1\|1207420_1208542_+\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_AP014724.1\|WP_060825825.1\|1211989_1214176_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|236901
NZ_AP014724.1\|WP_041961737.1\|1209924_1210206_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014724.1\|WP_060825818.1\|1201878_1203123_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|273704
NZ_AP014724.1\|WP_060825823.1\|1209362_1209878_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|224973
NZ_AP014724.1\|WP_060825826.1\|1214302_1215712_+\|DASS-family-sodium-coupled-anion-symporter	unknown	unknown	gnl\|CDD\|279307
NZ_AP014724.1\|WP_039674856.1\|1216786_1217350_+\|Fe-S-containing-hydro-lyase	unknown	unknown	gnl\|CDD\|180724
NZ_AP014724.1\|WP_060825817.1\|1200230_1201892_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	unknown	unknown	gnl\|CDD\|223541
NZ_AP014724.1\|WP_060825824.1\|1210186_1211353_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_AP014724.1\|WP_060825814.1\|1198382_1199084_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014724.1\|WP_060826951.1\|1205795_1207202_-\|potassium-transporter-TrkA	unknown	unknown	gnl\|CDD\|225935
NZ_AP014724.1\|WP_060825822.1\|1208568_1209351_+\|magnesium-transporter-CorA-family-protein	unknown	unknown	gnl\|CDD\|223671
NZ_AP014724.1\|WP_060825819.1\|1203103_1204711_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|366370
NZ_AP014724.1\|WP_039674882.1\|1197173_1197443_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	unknown	unknown	gnl\|CDD\|223375
NZ_AP014724.1\|WP_060825816.1\|1199734_1200244_-\|pimelyl-ACP-methyl-ester-esterase-BioV	unknown	unknown	unknown
NZ_AP014724.1\|WP_060825815.1\|1199378_1199735_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239245
NZ_AP014724.1\|WP_060825827.1\|1215922_1216774_+\|fumarate-hydratase	unknown	unknown	gnl\|CDD\|180486
NZ_AP014724.1\|WP_039674880.1\|1197448_1198285_-\|hydrogenase-nickel-incorporation-protein-HypB	unknown	unknown	gnl\|CDD\|349775

Protein	Function_ID	Function_description	E-value
NZ_AP014724.1\|WP_041961739.1\|1211342_1211993_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.06861e-41
NZ_AP014724.1\|WP_060825820.1\|1204703_1205753_-\|3-dehydroquinate-synthase	gnl\|CDD\|234565	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.	0
NZ_AP014724.1\|WP_060825821.1\|1207420_1208542_+\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NZ_AP014724.1\|WP_060825825.1\|1211989_1214176_-\|PAS-domain-containing-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	4.91423e-29
NZ_AP014724.1\|WP_060825818.1\|1201878_1203123_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|273704	TIGR01579, MiaB-like-C, MiaB-like tRNA modifying enzyme. This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see TIGR01574). Sequence alignments suggest that this equivalog performs the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium. [Protein synthesis, tRNA and rRNA base modification].	8.2513e-141
NZ_AP014724.1\|WP_060825823.1\|1209362_1209878_-\|histidine-phosphatase-family-protein	gnl\|CDD\|224973	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms].	5.25869e-39
NZ_AP014724.1\|WP_060825826.1\|1214302_1215712_+\|DASS-family-sodium-coupled-anion-symporter	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	5.93167e-136
NZ_AP014724.1\|WP_039674856.1\|1216786_1217350_+\|Fe-S-containing-hydro-lyase	gnl\|CDD\|180724	PRK06842, PRK06842, Fe-S-containing hydro-lyase.	5.52749e-89
NZ_AP014724.1\|WP_060825817.1\|1200230_1201892_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	gnl\|CDD\|223541	COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones].	3.06673e-145
NZ_AP014724.1\|WP_060826951.1\|1205795_1207202_-\|potassium-transporter-TrkA	gnl\|CDD\|225935	COG3400, COG3400, Uncharacterized protein conserved in bacteria [Function unknown].	2.14178e-114
NZ_AP014724.1\|WP_060825822.1\|1208568_1209351_+\|magnesium-transporter-CorA-family-protein	gnl\|CDD\|223671	COG0598, CorA, Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism].	8.0985e-24
NZ_AP014724.1\|WP_060825819.1\|1203103_1204711_-\|mechanosensitive-ion-channel	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	2.55545e-24
NZ_AP014724.1\|WP_039674882.1\|1197173_1197443_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	gnl\|CDD\|223375	COG0298, HypC, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	2.99514e-30
NZ_AP014724.1\|WP_060825824.1\|1210186_1211353_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.17187e-08
NZ_AP014724.1\|WP_060825815.1\|1199378_1199735_-\|hypothetical-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	0.000204314
NZ_AP014724.1\|WP_060825827.1\|1215922_1216774_+\|fumarate-hydratase	gnl\|CDD\|180486	PRK06246, PRK06246, fumarate hydratase; Provisional.	2.78182e-145
NZ_AP014724.1\|WP_039674880.1\|1197448_1198285_-\|hydrogenase-nickel-incorporation-protein-HypB	gnl\|CDD\|349775	cd05390, HypB, nickel incorporation protein HypB. HypB is one of numerous accessory proteins required for the maturation of nickel-dependent hydrogenases, like carbon monoxide dehydrogenase or urease. HypB is a GTP-binding protein and has GTP hyrolase activity. It forms homodimer and is capable of binding two nickel ions and two zinc ions. The active site is located on the dimer interface. Energy from hydrolysis of GTP is used to insert nickels into hydrogenases.	3.18123e-124

>NZ_AP014724.1|WP_060826951.1|1205795_1207202_-|potassium-transporter-TrkA
MKKILIIADGILAKQFLEKVMETEAGENSYTIITYKEETLPKRRPENFKFFEFDPTSYEKLAVVLNEQFFQIMILLSNEMDVTATYKNIRRIDNKVRIVLMDRWGLQLEDKRLFMVNSREILASRFTDHLPNMPIMAQNIGLGIGEIMEVSIPVGSSYAYRHLASIEQSKWKIAAVYRANALLLPRPTLMLLPNDLILLVGDPKVLQSVFRSIKRELGQFPSPFGSSIYCLVDMLEMNDKEMESLLNDALLLHSKLNSNKLHIKVIHPTYCKSLDKIKSYHSTHINVMIDYYETNPRKVLRADTETMDIGLIVTMNRFFQHNRKALYKTKLPVFKMGKRGFSSLNQGVVLSNDAHEIEQESSVIFDVATQLALEIKLYTYNPDHPEAKNSLIEHFENLSKIFGREVDMIQSEKNPLFKLKNRDNILQFLPFSHKILESNMLSIFSTDMDKLHFKLADNYQLFIPVNTN
>NZ_AP014724.1|WP_060825820.1|1204703_1205753_-|3-dehydroquinate-synthase
MHVNVVFNSTASSKDYTVFIDELQTLCFDTKVMIVTNTTVAALHLETIKTRLHVKTLHTVILPDGEQYKNFESLHCILNACFEHRLDRKSLLIAFGGGVIGDMTGFAASIYQRGIDFIQIPTTLLAQVDASVGGKTGINNDYGKNLIGTFWQPRAVYCESSFLKTLPNREFAAGVAEVVKMAVTFDREFFAWLETHDLHVDQNLAEAIRKSIAIKARVVAQDETEQGVRAVLNYGHTFAHVIENQTAYSVYLHGEAVAIGMVMANTLAKSLDLLSQEDALRIQTLLSRYDLPTHYDVPSSEAFYEAFFLDKKSANDTIKFILPQGIGNYAMRNDIPKETVLRALKGDHV
>NZ_AP014724.1|WP_060825819.1|1203103_1204711_-|mechanosensitive-ion-channel
MFKTLCCFFLTCTFLFADVNATSKLEDGIKIDALHQKIALIDEAVKDNLWFKRYGNYLTYQKLLEELSTVDAEVKKFKNTKDKASLEKYEKLLTKQESLEKQIELLQEFKNSPFSKLVDAADVESYTKVTNPFAILSALSYIKKIKQESLDYKARLERLDFLVEKLKEKETLLATLYEIEPMITNEDALYEAQKELNAFTSAQEIARTSYSLYVKKVEEATIRVTQDITVQMKRAFNIGIFIIVVIVVTFLLKFIAKRYVKDNERFYTANKIINFVNVTLILLILLFSYIENVSYLVTVLGFASAGIAIAMKDWFMSILGWMVIVFGGSFHVGDRIKIQKDGLPYVGDIIDISLLRMTVLEDITLTSYKENIRSGRIFFVPNNLVFTSVISNYTHGTMRTVWDGIYIYITFDSNHKKAVHIAREITKKYAKGYTDIARTQLNLLRNQYSLKNTNVEPRIFAFVEEQGFCVNCWYMTNSYAAMALRGTIGCEIIDAYNKEEDITIAYRTQNVNLARQDKPMPTHESPKSVDEKSLF
>NZ_AP014724.1|WP_060825818.1|1201878_1203123_-|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MKKVYFKTFGCRTNIYDTQVMMENLHDFELTEDEHAADIVVVNSCTVTNGADSGVRSYINHVSKEGKKVIVAGCGAMSKGESLFAQKKVFGVMGHSEKAHINTLLKYDRPFFEIGDLTSLDETIVHEYTGKTKAFIKIQEGCNFRCAYCIIPFVRGNARSQDENTIVEQVRKLALNGYGEFVLTGTNIGSYGKDKGSSLGKLVQRLGAIRGVRRIRLGSIEPIQIDESFREILREPWLERHLHIALQHTSETMLELMRRRNRVMRDLELFCELSEQGFALGTDFITGHPGESDAIWQEAYHTLEKFPLTHLHAFTYSKRDGTPSALMKPEIKGDIAKERLKQIEALVHAKNIAFRQARRHVALDVLVEEYKDGLFIGYDQFFNKVTLQSERDVLKEWVNVTSYEILGECNHANF
>NZ_AP014724.1|WP_060825817.1|1200230_1201892_-|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein
MQIFKSQKLMLSFMALSIFIVLLAFGYIRITPKIIDLPTYNALLNSGAIQKAKVENDEVFLYGINDQFVIIKDGIDMSELLQKVPVEVARNNAFIDDMLIIVLLLGGLLALLLFARKKRAEDAKKEQENAQKAYASYDPFLGNVIRPVRAQVSFKDVAGIQDVKEELEEIVDFLKNPAKYKRYGISLPKGVLLVGPPGVGKTMIAKAVAGEASVPFFYQSGATFVQIYVGMGAKRVKELFSQAKAHAPSIIFIDEIDAVGKARGGLRNDEREATLNQLLTEMDGFEDSSGVIVIAATNKIEVIDEALLRSGRFDRRIFISLPDKHDRTEILKTYLRNKPSDINLEELANMSVGFSGAALATWVNEAAINALRRSSQTLETSDFIAVRQKVLLGKKKVLSFSNEEKKIQARYQAAKAVCAYWFEIDFDKVTIVNDRIKDMDREIESKTQMLSKLKVYLAGMVATELAYNEKYTNATEDLNRALEIAREMVEVYGMGEKLLPNENDVLMILETAQKELERFLEGMHSILDKVSDTLYTHESISRNELKVIIDDVL
>NZ_AP014724.1|WP_060825816.1|1199734_1200244_-|pimelyl-ACP-methyl-ester-esterase-BioV
MTFFSGFCFQGEEALFEPYLIQNDFTVAGFSYGAIKAFEYALTCQTRIDTLQLFSPAFFQHKDAKFKKLQTLFFAKNSESYTQNFMQNTVYPSTFDVTPYLHQGSIEELNELLNYVWDETKLHMLVAKGITIEVYTGECDAVVDSLTCKDFFVPFASVYYVKRVGHLLK
>NZ_AP014724.1|WP_060825815.1|1199378_1199735_-|hypothetical-protein
MQALNETELLERLSQPHRAFLLLLHTAHCSQCKIADARVKRVEQNLVLHVDFLTCNLDEAPRIHELFNIRSVPICMAYNEKSELHRVEYGLKSEAVYESMALGINPQKGNPKSRLLGF
>NZ_AP014724.1|WP_060825814.1|1198382_1199084_+|hypothetical-protein
MKSSGNLSCLFCGASKLYRVSKTQYRCATCKQTWSAQKAHKETLIIEAFVEGLSINAASSFLQLNYATVQKRYASYRSFLVQKSEVRYQSAALFSEYDEYYYLPTSKKGNPRYIFDAIGILGMLCDKGVYTLLLPDHFESLKQNSCALEEKEAYAKYLQHHKIARLESFDSRLSRFWIFLETFMHRFKGVDHTNFIYYLKEAEFRFNHTKEEQRQILGQINTYKYRYVENSKK
>NZ_AP014724.1|WP_039674880.1|1197448_1198285_-|hydrogenase-nickel-incorporation-protein-HypB
MCKDCGCSITPTQWSAHEHTHSHDGHEHSHAHTHDDHHDHDHPHSHDHEHKHEHLHANPQLNDAKTISVITKILDANDTQAAHNRAHFEEHGILAINLMSSPGSGKTTLLEATIDAKEIKLGVIEGDLETNQDADRIVAKGAPAYQITTGQACHLDAFMVHDALHHLPVEGLDVVFIENVGNLVCPASYDVGSHLNVVLLSVPEGDDKPAKYPVMFKNADLFLITKCDLLPYFDFSIEKAIREARKLNPKVDVIEIDSKSGKGIDQWIAYLKMKKALR
>NZ_AP014724.1|WP_039674882.1|1197173_1197443_-|HypC/HybG/HupF-family-hydrogenase-formation-chaperone
MCLSIPSKVVEIDENNYATVDTLGVRRQVTLDLISEPVHVGDYVLIHVGFAMNKISKEEAEDSIAAYNEIAEAMKNGEIDEDEGNSHYA
>NZ_AP014724.1|WP_060825821.1|1207420_1208542_+|tRNA-guanosine(34)-transglycosylase-Tgt
MKFQIDKTDGNARACTIQTAHSTIQTPIFMPVGTVGSVKSLDAKDVMEEVGAKIILGNTYHLYLRPGDETIRHFGGLHGFTKFPYSFLTDSGGFQAFSLSDISKADQNGITFKSHIDGSTHYFTPEKVLDIQYNFNSDIMMILDDLVALPATKERIALSIQRTTDWAKRAIAYHLRKKAEGIGTHQNIFAIIQGGTDQEFRRISANELCELPFDGFAIGGLSVGEANREMYDTVEFVTPLMPTHKPRYLMGVGTPEDLVENVERGVDMFDCVMPTRNARNGSLFTSFGKISIKNAKFALDENPIDPECDCLTCKHYSRGYLHHLYRAKELTYFRLASIHNLHYYLHLMAQMREAILQGSFAAFKAEFYRKRGN
>NZ_AP014724.1|WP_060825822.1|1208568_1209351_+|magnesium-transporter-CorA-family-protein
MQTLYETIDRFYLLDIKNPTHPSMFVEEAAYDILIVTLPHKDKELIVNAHAFVFDDRHYYRYDSVQSVFLELTSMEEVYVYLNEKTNETMKLVASIHESIDWMEERLYENKPFTAFMHYWLTYKKDLARIVRLLTLATEVLETFVQRYIQEEGFLATHFNDIHEHLSRTNRSALLAIDKLGNLYTFYTSRNNERMNKTIYFLTILSAIFLPLNLVVGYFGMNTQNLPFSTIASGSEKVTVLLGLCAGVMIGLIFYLRRKL
>NZ_AP014724.1|WP_060825823.1|1209362_1209878_-|histidine-phosphatase-family-protein
MKKIYLIRHAKSSWKDETLDDFIRPLNARGKRDVLFMGKRLKMFDVLPCAIYASPAKRSEKTAKELAKAVEFNKKKIIYTKKLYDSTFETYLSLIQSIDDHCNDVFIIGHNPTITEVGERLSGAILSNIPTCAIVCLRFDVEHFHEITEESGHILFFDYPKKHLKETSQES
>NZ_AP014724.1|WP_041961737.1|1209924_1210206_-|hypothetical-protein
MNLQSLDDDFLQLDYVSDPKLYDEKRYFNEEGDEPFDTTSKAQMLLMLNTLAYEMQLDTYALKKMEIFLRSELPFFAVTRRLVRQWVTQNFLY
>NZ_AP014724.1|WP_060825824.1|1210186_1211353_-|MFS-transporter
MNVKTPFLASREGLLYLLAAAVPVAFSAWNSLLNNFAVEVVRFDGEKIGLLQSLREVPGLLAFTIVFVLIFLRQQSAAYLSLALLGIGTMLTGFFPSAVGLYVTTIVMSVGFHYLETLHSSLSLQWIDKNKAPSFLGKLSSLRSFIGLGILALLYVLMQYANVGYTAIYALSGAITVAAALFAWRVFPHFKDDVIQENKLFLRRKYWIFYVLTFLAGARRQIVVVFAGFLLVERFHFSVQNMLLLLIVNTVLNMLCAPYVGKLIERFGENLSLKIEYGSIVLIFVLYAMVQSLEMAVGLYVIDNLFFTIAIALKTYFQKIADARDIAVTSSIGFTINHISAVLLPFSLGIIWTYSVSAVFLIGAFLATISFCLTFLMPKGVMHEPSVS
>NZ_AP014724.1|WP_041961739.1|1211342_1211993_-|response-regulator-transcription-factor
MKILVLEDNERLANVIVEAFEDKKYRVDLFDNGKKALEAIDNGYDCYILDINVPGIDGLSLLKEIRSMDGETPAIIISANVELETIQEAYCKGCDEYLKKPFYMYELETKIERLCKPKAHTIRLAQNFSYCVEHERLLDNRGEEVKLAKKEILLLNLFAKNLDKNITFERIEQYVWGGELTTTENIRALIKRLRKKLPEEAIENQGGVGYRLNYER
>NZ_AP014724.1|WP_060825825.1|1211989_1214176_-|PAS-domain-containing-protein
MNILKIIIGLFFYSSFLFGNEILLLHSYNKGLKWTDGISSGVEDVMKKHPEYELTTQYMDSKKIESQNYFDELLDLYRKKFRDRTYKAIIAADNYAYEFALKYHRELFPNTPIVFCGVENFNPKDITPYLKQYVTGIVEYKDIRKNLELIQTLFPATKMVYIISDDAYSSLMIKDQIVEESSHFQDKVRIVFDNKIDFKTIDEKIDKLPKHSVILFTSFYRDMYGNYIPYHRLQSFFQRSKYPVFALNRIHVGEGVIGGYMVDPYEQGYLAAKRAFEIISGKKISSLPVSTPSNNYFFDNLVLKKFGLSTSDIPSPSVVINGVESFYEKHQKFVENAFTLMPLLLLLTTILVLNIIKRISLEKEQLRQSKLDYVLLNNIQSAIFWKANDGTVLGCNELLCEIVGRDKWDIVGRNIQEVMPSICDQIQNVPLNNPNSTEIEIQFPHHEKKTFAIRRTYYTDEKNLEAGVVTIMTDITEKKKIDTEHKRHEQFVVQRSKQSEVGEMIASIAHQWKTPLVEISAIAQELIYKRRKKVLDEADTQKFVDDIMTQVKYMSRTIDDFRQFIKPSTRQSAFDVKDAVETMLEVVNHNLKYNYITITIHDLCQEKLLAFGYPNEFKQCILNIVNNAKDSILKRREAVSTEGVILITLQSDETSIYLTIEDDGCGIEQETLETIFNPFMSTKEHGDGFGLYMARLIIEDKMGGKIYAEQKEQGARLCIVVQKYKGSV
>NZ_AP014724.1|WP_060825826.1|1214302_1215712_+|DASS-family-sodium-coupled-anion-symporter
MSKQAISMLIPVLVMLVVWFLPAPEGLSANAWHFMAIFLGVVVGLVLEPVPAALVGLVGVCLVALMGIIDPKPAEGIKWALSGFSNSIIWLIFAAFMFAAGYQKTGLGKRISLIMVKFMGKSSLGLGYAVAFADLLLAPFMPSNTARSGGTIFPIAINIPQIFNSLPDNEPRKLGSYITWVAMAATCVTSSMFLTALAPNLLAVDLIAKSAKVTIEWGAWAKVMIPLMLPLFLLTPLLAYIVYPPTQKQSPEAPIWAANELKKMGSITFKEIMMLLFAVLALVLWIFGKELSVDATTAAVSIVALMVLCKVISWEDVIGNKGAWNVLVWFSTLVALAGGLGKVGILKWIGTMAESSLTGLSPMALMISMIIVFFILHYFFASVTAHVSALVPVFALIAVKFIAPDQLPAFMILLAGSLGIMGIITPYGTGPSPIWYGAGYISQARWWALGALFAVIYLAVLLVGVFLFV
>NZ_AP014724.1|WP_060825827.1|1215922_1216774_+|fumarate-hydratase
MREIKYEDIVKSVKDMILYSATNLPKDAYKALQSAYDTEKSEVCRQVLKQILENADIAANEARPLCQDTGLAVFFVKVGEDVKVVGGSLKKAINEGTEQGYKEGYLRASTCHWDTRANLKDEVGYNLPAIIHFDLVEGDKIDIEYAAKGGGSENVSRATVFPPAKGRKGIIEYVKQVISDAGPNPCPPLTVGVGIGGTFEKAVISSKHALFRELGSKNPDPVLESMEEELMHLLNNLGIGAMGMGGTQTVLGVHIEKNPCHIASLPVSVNVQCHSSRHMHITL
>NZ_AP014724.1|WP_039674856.1|1216786_1217350_+|Fe-S-containing-hydro-lyase
MSKTYHLTAPLSEADVIQLKAGDIVYLTGVVYTARDAAHKKLVDLLDAGQALPFDMNGAVIYFVGPTPPKPGDPIGSAGPTTSYRMDSYSPRLINEQGLKGMIGKGKRNQDVIDACVKSKAIYFGATGGAGALLARQIKKAEVIAYPELGPEAIRRLEVVDFPLTVINDTFGADLYKMGRAQYEVFE

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Crispr_ID: NZ_AP014724_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014724_4

1315901-1315997

Orphan

Consensus_repeat	Method
TTATGTTGGTTTGAACAGAGTTTAAGTCTATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014724_4

>merge|NZ_AP014724|4|1315901-1315997|CRISPRCasFinder
TTATGTTGGTTTGAACAGAGTTTAAGTCTATGAAAGAGAGTTTAAACGTTTTGAACGTCGCATAATTATGTTGGTTTGAACAGAGTTTAAGTCTATG

>NZ_AP014724|4|4|1315901-1315997|CRISPRCasFinder
TTATGTTGGTTTGAACAGAGTTTAAGTCTATG	AAAGAGAGTTTAAACGTTTTGAACGTCGCATAA
TTATGTTGGTTTGAACAGAGTTTAAGTCTATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014724.1\|WP_144440965.1\|1316849_1318036_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_AP014724.1\|WP_060825887.1\|1313952_1315437_-\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|223383
NZ_AP014724.1\|WP_060825895.1\|1328291_1329278_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|225070
NZ_AP014724.1\|WP_060825891.1\|1320295_1322431_-\|bifunctional-acyl-ACP--phospholipid-O-acyltransferase/long-chain-fatty-acid--ACP-ligase	unknown	unknown	gnl\|CDD\|181207
NZ_AP014724.1\|WP_173636972.1\|1308519_1310655_-\|DNA-translocase-FtsK-4TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|224588
NZ_AP014724.1\|WP_041961804.1\|1325911_1326550_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_AP014724.1\|WP_039674522.1\|1313606_1313888_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_AP014724.1\|WP_060825886.1\|1310806_1313440_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236261
NZ_AP014724.1\|WP_060825883.1\|1303041_1304703_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_AP014724.1\|WP_060825892.1\|1322433_1322742_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238042
NZ_AP014724.1\|WP_144440985.1\|1326559_1327492_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|226955
NZ_AP014724.1\|WP_039674527.1\|1305386_1305878_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223976
NZ_AP014724.1\|WP_039674530.1\|1304689_1305382_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_AP014724.1\|WP_060825890.1\|1319036_1320299_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|235865
NZ_AP014724.1\|WP_060825894.1\|1324170_1325889_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|371922
NZ_AP014724.1\|WP_060825884.1\|1305936_1308495_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	unknown	unknown	gnl\|CDD\|236424
NZ_AP014724.1\|WP_060825893.1\|1322842_1324168_-\|dual-specificity-protein-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|183473
NZ_AP014724.1\|WP_060826954.1\|1327488_1328085_-\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223632
NZ_AP014724.1\|WP_039674532.1\|1302173_1302962_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319873
NZ_AP014724.1\|WP_060825882.1\|1301047_1302172_-\|polysulfide-reductase-NrfD	unknown	unknown	gnl\|CDD\|309148

Protein	Function_ID	Function_description	E-value
NZ_AP014724.1\|WP_144440965.1\|1316849_1318036_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.30065e-78
NZ_AP014724.1\|WP_060825887.1\|1313952_1315437_-\|inorganic-phosphate-transporter	gnl\|CDD\|223383	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism].	9.72142e-52
NZ_AP014724.1\|WP_060825895.1\|1328291_1329278_-\|amidohydrolase-family-protein	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	9.10507e-19
NZ_AP014724.1\|WP_060825891.1\|1320295_1322431_-\|bifunctional-acyl-ACP--phospholipid-O-acyltransferase/long-chain-fatty-acid--ACP-ligase	gnl\|CDD\|181207	PRK08043, PRK08043, bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase.	0
NZ_AP014724.1\|WP_173636972.1\|1308519_1310655_-\|DNA-translocase-FtsK-4TM-domain-containing-protein	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	1.05961e-165
NZ_AP014724.1\|WP_041961804.1\|1325911_1326550_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	2.72289e-44
NZ_AP014724.1\|WP_039674522.1\|1313606_1313888_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	1.72838e-28
NZ_AP014724.1\|WP_060825886.1\|1310806_1313440_-\|hypothetical-protein	gnl\|CDD\|236261	PRK08412, flgL, flagellar hook-associated protein FlgL; Validated.	5.07544e-160
NZ_AP014724.1\|WP_060825883.1\|1303041_1304703_-\|sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.18538e-35
NZ_AP014724.1\|WP_060825892.1\|1322433_1322742_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	2.30059e-10
NZ_AP014724.1\|WP_144440985.1\|1326559_1327492_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|226955	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only].	6.14804e-109
NZ_AP014724.1\|WP_039674527.1\|1305386_1305878_-\|peptidylprolyl-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	4.93708e-32
NZ_AP014724.1\|WP_039674530.1\|1304689_1305382_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.60691e-41
NZ_AP014724.1\|WP_060825890.1\|1319036_1320299_-\|MFS-transporter	gnl\|CDD\|235865	PRK06814, PRK06814, acyl-[ACP]--phospholipid O-acyltransferase.	6.48542e-146
NZ_AP014724.1\|WP_060825894.1\|1324170_1325889_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|371922	pfam12147, Methyltransf_20, Putative methyltransferase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The family shows homology to methyltransferases.	1.35689e-108
NZ_AP014724.1\|WP_060825884.1\|1305936_1308495_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
NZ_AP014724.1\|WP_060825893.1\|1322842_1324168_-\|dual-specificity-protein-phosphatase-family-protein	gnl\|CDD\|183473	PRK12361, PRK12361, hypothetical protein; Provisional.	7.42689e-24
NZ_AP014724.1\|WP_060826954.1\|1327488_1328085_-\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	1.04855e-19
NZ_AP014724.1\|WP_039674532.1\|1302173_1302962_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319873	cd10551, PsrB, polysulfide reductase beta (PsrB) subunit. This family includes the beta subunit of bacterial polysulfide reductase (PsrABC), an integral membrane-bound enzyme responsible for quinone-coupled reduction of polysulfides, a process important in extreme environments such as deep-sea vents and hot springs. Polysulfide reductase contains three subunits: a catalytic subunit PsrA, an electron transfer PsrB subunit and the hydrophobic transmembrane PsrC subunit. PsrB belongs to the DMSO reductase superfamily that contains [4Fe-4S] clusters which transfer the electrons from the A subunit to the hydrophobic integral membrane C subunit via the B subunit. In Shewanella oneidensis, which has highly diverse anaerobic respiratory pathways, PsrABC is responsible for H2S generation as well as its regulation via respiration of sulfur species. PsrB transfers electrons from PsrC (serving as quinol oxidase) to the catalytic subunit PsrA for reduction of corresponding electron acceptors. It has been shown that T. thermophilus polysulfide reductase could be a key energy-conserving enzyme of the respiratory chain, using polysulfide as the terminal electron acceptor and pumping protons across the membrane.	1.34006e-102
NZ_AP014724.1\|WP_060825882.1\|1301047_1302172_-\|polysulfide-reductase-NrfD	gnl\|CDD\|309148	pfam03916, NrfD, Polysulphide reductase, NrfD. NrfD is an integral transmembrane protein with loops in both the periplasm and the cytoplasm. NrfD is thought to participate in the transfer of electrons, from the quinone pool into the terminal components of the Nrf pathway.	3.37838e-31

>NZ_AP014724.1|WP_060825887.1|1313952_1315437_-|inorganic-phosphate-transporter
MSVLWDALNGVGAITIALLILSLGIALFYEMINGFHDTANAVAMIIYTHSMKAKYSVVMSGMMNFLGVITGGIGVAYSIVHLLPVDIMVTSNPNASLAMVYSLLIAAVIWNFGTWYFALPVSSSHSLIGAIIGVSATFGIMNGFDISHSVNWKVVYTVLIGLAVSPILGFGFAYLLMRLSRKYINNPRLFRTPEQEEKRKHPSFWARTGIVATGAGVSFAHGSNDGQKGIGLIMIILIGILPQYYALNMDSHHYKIIQTRDAANNLARFYQDNQDSLAQLVSEKRLISALKTKNTIAECNVNQVGETVSLVASKLDHLHSYSELSIEDRWSVRTAILCSDNFFAQAEKIYLLSDKDKSDYIAAQRKHIVSAIEYAPYWVIIAVALAIGVGTMIGYQRIVLTIGEKIGSKPINYMQGTVSQATAMLTILLANFAHAPVSTTHILSSAVTGSMVAEPDGGVQKNTIKVIVLSWVFTLPVTALLGSVIYMGLNFLMK
>NZ_AP014724.1|WP_039674522.1|1313606_1313888_+|HU-family-DNA-binding-protein
MKKAEFIQAVSEKAGLSKKDSQKAVDAALEAISEALVAGKEVSFIGFGTFSTATRAARKARVPGTNRVVDVAKTTAVKFKVGKKLKDSVASAK
>NZ_AP014724.1|WP_060825886.1|1310806_1313440_-|hypothetical-protein
MRITNSLLHSTSLRNYRTNSESLYNINQQIASKLKIQNSYEDTGIYIDAMRLNTEIDTLTQSSAISSKAATFANNTDTTLTSFSSTLDQFKAKLVQASTSTNSTTSLEALANDLTGIKQQLLSLANTSINGQFLFSGSSLNQKPIDAYGNYQGNDENLKALIGSGVELDYNINGQSLFLGKDSDYSKIVSSNVALLNQSKLHPDVMTQNSQNETASEVYITQDDTIRDLVGDTNNNASDDGKAVFYLSGRKSNGTTFSNTIKMDTGSKVSNLLDSIGEAYGNTATNKVVSVSLNAHGQIEVKDLMTGHQTLEMNMFGAIDRNATAGQTGDAEQIMNIDNLTLHPNVDIIAFNKSNYATSLSSPDLTMRSSVLSGGNFGISFPQSGVDTSTISTTTALKDIFPADVDHLDFGATSFSIAGKTVQDLMSAIDTEYYGGVPTATLGSGMIKVPTNVVSIVPKNASNGLAHGNALPDAMNYARRGFEKDGNLLSGNVSQVVKSTNNFATASTKLVDVAGVDSLNGKQLVLNFTDKNGISRTGTLNLDSSDTTFSIDLDGDGIINSSEPNEIISIYNGKGDLSNTKTKADDMTYQQLLDIVSMVTSGNIPKQGVTSDAQTAINNAIAFGVAGDTTNRDAQAAIAKSGVSLETQAYIQKAIDAGIVKADPTSSAAQIAQATIDYDNAIANANTAEYNYALSTAKNSVEATLDYKGRINIVDKKSSETKIALSMYDKSSTDFTGIGSTALSFMANDSVTVESPSVDIFKQLDEMIEAVRSGNLYMDASSDDPRAMGIQNALLQIDHIADHVNKAHTKIGALGNALTDANARSEMLTVNVKTVQNSVISVDTAEAYLEYQAIYTSYQAMLSTLSQINKLSLLDYM
>NZ_AP014724.1|WP_173636972.1|1308519_1310655_-|DNA-translocase-FtsK-4TM-domain-containing-protein
MLKETFFIIFIAIVLYLGVATVLPDASVVGRFGAYLGHGNQHFFGYLAFIYPFMLILPAFTLYKEGKVTERSVGIFVASAILFFAFLMAQSIIVHNEYNGLFGRSIVDLLIGFIGIMGVWIFILAVFMLAMTLLVESSISDFFALIKPTFTKTSVKEYKAEPAEEPKREEKKVKSVRKQEALIPTDEETEENPTILQPLFPEEGEPKKSLVKLKSSNAKVEILSEVEENKKLLSQIDQGEVDKPKDFKLPPLSFLANPPTKAVHVNENEIDQKIQDLLEKLRRFKIEGDVVRTYSGPVVTTFEFKPAPHVKVSRILTLQDDLAMALRAKTIRIQAPVPGKDVVGIEVPNQKIETIYLKEILESDIFKKSASPLTIALGKDIVGNAFVTDLKKLPHLLIAGTTGSGKSVGINAMLLSLLYRNSPDTLRFLMIDPKMLEFSIYNDIPHLLTPVITKPKQAIVALANMVSEMERRYQIMSRSKTKNIENYNEKAKSLGLEPMPYIVIIIDELADLMMTSGKDVEFYIARLAQMARASGIHIVVATQRPSVDVVTGLIKANLPSRISFKVGQKIDSKVILDAMGADSLLGNGDMLFTPPGTSGLIRLHAPYTTEDEIDKVVEYLKKQRPVVYDESFLKESEEGFSSASGSKDSGELDELFEDAKAIVLNERKSSISYIQRRLNIGYNRAATIVEQLEAMGILSSQNAKGQREIIV
>NZ_AP014724.1|WP_060825884.1|1305936_1308495_-|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase
MDFFESYQAEVNERAKLGVPPLPLDAKKTAQVVELLKKEEGDQAFLRSLLADRVPPGVDEAAYVKAAFLNDVAQKKVTCKAISAVYAVELLGTMLGGYNVQPLVDALSSSDNEVAQAACNALKNTILVYGSFNDIETLSKTNTYAKEVMLSWANAQWFTSKPALPEKMTVAVLKVAGETNTDDLSPASEAFTRSDIPLHANAMLLKRLPGALEKITELKAKGYEVAYVGDVVGTGSSRKSGINSIQWWMGKEIAGVPNKKTSGLILGSTIAPIFFNTAEDSGALPIEVNVDAFETGDIIDVYPLLGKVEKAGKTVGTFKLSPNTLADEYRAGGRIPLIIGRGLTAKARASLGMGAETIFAKPEQPEELQGVGYTLAQKMVGRACGVKGVRAGMYVEPQTLTVGSQDTTGPMTRDEIKELAALGFSADLVMQSFCHTAAYPKPSDVKLHHTLPDFITSRSGVSLRAGDGVIHSWLNRMVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTGSMPLNMPESVLVRFKGEMQPGITLRDLVNAIPYYAIQKGLLTVPKKNKKNVFAGRILEIEGLPKLKVEQAFELSDASAERSAAACTVALDEESVVEYLQSNITLLEAMIKAGYQDAKTLQRRADKMKAWIKEPKLLKADADAHYAEVIEIDLNEIKEPILACPNDPDDVATLSEILADDNRPKKIDEVFVGSCMTNIGHYRALGEVLQGEGKVPTTLWIAPPTKMDKNQLTQEGYYALFGTAGARIEIPGCSLCMGNQANVREGAVVFSTSTRNFDNRMGPNSKVYLGSAELAALCALLGRLPSVEEYMSLVPKKLAGKTEKVYQYLNFNLIEDFALGH
>NZ_AP014724.1|WP_039674527.1|1305386_1305878_-|peptidylprolyl-isomerase
MTVHKNCVVTLDYTLFNTQHELLDSGATPLVYLHGGYDEVFVKIEQALEGKRIGESVHMQLLPEEAFGEYKGELVLVEDRSQFEDDLQIGEQVEMVFSEDDDEEIMMVYTVSEIRDDQVVLDANHPLSGVTVVFDATVIGIREALPEEIEKRFHSIDVERSVL
>NZ_AP014724.1|WP_039674530.1|1304689_1305382_-|response-regulator-transcription-factor
MYDTLGLFEHLTILYAEDEESLRHSVAQTLELFFKRVIQASNGEEAEELFYEHRPDVLLLDICMPKCNGLELLRRIRESHKRVPVIIMSAYAEQRYFLEAIELNICTYLLKPFSKESFLNALKTCAHWMYEWGEGNVIKVNESVFYNPESCTLYVNETPSVLTKKERLLFEYLLRQKNRVLSYDMLEEAVWAGDGGNKEALKALVKELRKKLPNDLIENIFGIGYKLAVR
>NZ_AP014724.1|WP_060825883.1|1303041_1304703_-|sensor-histidine-kinase
MPYAKKRLSPSTKTKTMIFVLLLFAAMAMIFGWMRYLDVKESIEKSRKDYALQIHSLYQTTLERTATFYLNRAYANLDSYGIKDALVHKNVEQLTGLSSFRWKVLKQENPFLLGIRFYDENRHLIAHLGKDPKQSEIDEKRAVPNEPQFGFFFSKHYAAYHIIVPVYVDKALVGMLEFAIAPEYFLNEVEEFSGLKGYILFKGETFEPKENDLRSISLQDGAISQNRTRTYITHVIQLEGLIGDHLAQLLFFQDISDQQQKLLDAVYEAFFLTLAMIGVLLVILNYGFDVLIKRLEESEAGLRHLNHTLEDRVNQEIEQRLHHEQLLMHQSRLASMGEMIGNIAHQWRQPLSELGATLMNLQLLWERNKLSRDIFEERIARSEKLIAYMSKTIDDFRNFFMSDNQKKDYVINDTIQKAIDLIDSALKNHHIRLTFEAQERLEIKGCPSQFAQVVLNIIGNAKDILLERAIDDPHISITLQRIDGRICIRIVDNGGGIEMEPIERIFEPYVSTKHAKSGTGIGLYMSKTIIEQHAQGSLKAFNTDQGACFEIIL
>NZ_AP014724.1|WP_039674532.1|1302173_1302962_-|4Fe-4S-dicluster-domain-containing-protein
MPSKSRREFVKKATGLIGVSTLASTHAHALSLTNPGRDAKDARYVGQEGKRFGMVIDLRKCVGCQACTSACKSENKVPKEKFRTYVPEYELGSYPSVRKAFLPQLCNHCAEPSCVSVCPTGATFARKDGIVVVDNEICWGCGYCINACPYDKRYFNPISNVADKCTLCAHRVDHGLLPACVESCVGGARVFGDLNDPSSHVSRLLATFPATVLKPASGTKPRVFYIALSGEIQSLPYSNGILDDAVRKREGALHKEWSSKGE
>NZ_AP014724.1|WP_060825882.1|1301047_1302172_-|polysulfide-reductase-NrfD
MDFGSLLHTISSITPDRPWGIDIPNYFWFTGSSAAAFIISSFAHVFGMKEYKPIAGFSLLLAFVLLVAAPMNLIDDLRQPGRIINFFFYGWENFPTSPMKWGVLLLMAYPLLILAEAIVLYRPYFTMKKGVAYTKEQEEKDHRLGVLLGAIGIPLALSVHGYTGYILGAVHAIPLFHTPIMPILFLASAMVSGTGLLIILLPIFQKFFTDFKRIDYAMMQRLARLLAWFIVIDLVIRFFWLTFAITFNNEEKYALKLFFGENFWEVLIVDYVICLFVPMAIGFIRFFSRSLKWVLFAGVLSAIGVWIFRWNTVIGGQSIGKTTPFLLEYHPHVFGFDSILSVVSNWSLLIALIAAIMALFPWDKEMANYYTKEQ
>NZ_AP014724.1|WP_144440965.1|1316849_1318036_+|IS3-family-transposase
MSGRVQRYTQEFKDSAIQLALNSEKSAMVIAKELGMSEKTLYAWLRQYRQKHHLESPMIVRSSINHHAKESVEEENKRLRKENARLKMERDILKKAAGVLRKRSSLKYAWIKEHCNEFNVASMCHILEVSRNCYYRWLRIEKQEDTFLNTMIKDIFLGTYQTYGTRRLKKRLEQLYGLIVSRRRIARIMKKLGLSCRNKRRFRVLTTNSNHTYAIAPNRIQQDFYTSTPDQMYVGDITYIPTQEGWLYLAVVIDLYSRRVIGWSMDTHMSSMLVNDALFMALKKRNPPHGVIWHTDRGSQYASDAHKALLKEYGIVQSMSAKGNCYDNAVAESFFHSLKTELTHHMKFETRSQANQAIFEYIEVFYNRQRLHSSNGYLSPVDFENRYLLQNNISA
>NZ_AP014724.1|WP_060825890.1|1319036_1320299_-|MFS-transporter
MSAFYLLKTKRFAPLFSVQFLGAFNDNILKNTLAILVTFHASAWTSLPLGILAPLIGAIFILPFFIFSGLAGALADKYDKATLTRLVKLLELGLMSIATLGFYMHWFSLLLVVVFGMGLHSTLFGPIKYAIIPQHMGENELVMANALVESGTFGAILLGTLGGGLIATSVSGGIIAGVMGMAIALMGYMCSRYIPTAPSLNAQMSLSYNIFSQTAKTLKLAYANKTVFLAIIAISWFWLYGALLLSQFPAFVKIVLEGDETTVTLLLSLFTVGIGVGSFLCEKLSHHAIRPSLIILGALGMAFFGIDFALTSSSFVPVEVLFSSSTFWHILIDLTLIALFGGLFSVPLYAIMQSQSDPAFRSRIIAANNILNALFMVLGAVLTMVLLDASWQIPEVFLSAAIGTGLIATWIAWVLYKRLD
>NZ_AP014724.1|WP_060825891.1|1320295_1322431_-|bifunctional-acyl-ACP--phospholipid-O-acyltransferase/long-chain-fatty-acid--ACP-ligase
MIKTILRIILRILFKIRVHGHFTANKNEPMLIIANHQSFLDGLILGAMLPVSPVFIINTQIANNPFIRFFLMLVDHLTVDPSNPMAIKAIIRLVESGRPVVIFPEGRITTTGSLMKIYEGSAFVAVKTNATVVPIIIQGATFSKLSRMPKTYPHRLFPQILLRYCTPTKLTVPHEGTSHERRLLSGEAMRRLMQECSFDARPANDLFGTFLDAIETYGKNKAIVEDIKQVEYTYAQLLKMALGLGRLLSPITQKDEAVGVLMPTAVASLALVLGLSGIKRIPAMLNFTAGVDGLQSACDAAKIKTIVTSQAFVEQAKLAPKLEALKGVSIVYLEELKASMRLVDKLWLMLYVIHFPRLVTSSQDEKETAVILFTSGSEGKPKGVVLSHEALLANIAQISSIVDFSTEDKMLNALPIFHSFGLTAGSLLPIFRGMHLFMYPSPLHYRVIPEIAYDRSCTILLGTSTFLHNYARHAHPYDFYRVRYVIAGAEKLAENVRELWFEKFGLRIFEGYGATETAPVIAVNTPMAYKKGTVGQILPGIEYKLIPVPGIEEGGILHVKGANVMSGYLRAENPGVLEKPTSEAGEGWYNTGDIVSIDEAGFVQIKGRVKRFAKIAGEMISLESVEKLATLTSNGFLHASSSIPDVARGEAIVLFTTDKNLSREALQKNAQSNGFPEIAVPRKIVHVEALPLLGTGKTDYVTLKSMASEIA
>NZ_AP014724.1|WP_060825892.1|1322433_1322742_-|winged-helix-turn-helix-transcriptional-regulator
MQTQYAKDLPLEWKPMSAIFMALGDAHRQRILLLFEDGERLNAGQIAEVSPLARTTVSHHLKILHQAEVLLSEKIGKEVWFWVNKPLLEATFNNVLDYLHGK
>NZ_AP014724.1|WP_060825893.1|1322842_1324168_-|dual-specificity-protein-phosphatase-family-protein
MYAFDAKLEACATLKERFVWTLFMGALFFILYGAANQYAHMTAPHSSFYGEWERQIPFVSSFIIPYMSSDVMFCIAFLLPQTRLELRTLSLRVLFIVVSSVLIFVFFPLQCAFTKPQTDSYRFLFNLLLADLPYNQLPSLHISFAVVLWASMREHFVNRLVKYGVALWLWLIALSTLFVYQHHFIDLPTGFLMGLCAIGLIPSQKSNPLLNRFMTPRSLKVGLYYLSGALVFLVGAFYAHSLFLLWIFVSLLLVSLAYAFGFNELIAGKNVQASWWQWALFAPYFIGTYLSWRWYKRTLPLFAQVQERVYVGRHPDTKEYARLKEVGVQHIVNLALEHQCRQSVVSQTRFAFLDLTIPSTEVLHEVVLLIEKYKEEGVYVHCALGLSRSILAIGAWLMYQGYSLEQIHERLRQIRPAYVASKYMHVSLSLYATYLEEQKRG
>NZ_AP014724.1|WP_060825894.1|1324170_1325889_-|alpha/beta-fold-hydrolase
MKTGTFRSFDKAELFFREWEPTQEANGKVVLLLHRGHEHSERLDSIARSSIFAGYKIFSYDNRGHGYTKEGATYEFMNLVRDLDAFVRFVCEKEHITQEAIFVVANSVAGVVASTWVHDFAPKIAGMALVAPAFKIKLYVPLAKPALALMLHFKEGLNITSYVKAKFLTHNAEEQKRYNTDPLITPNIPAKQLVTLLDTAQRVVEDASLIVTPTLVLSATADYVVESSVQKIFYDKLSSPLKRFVALEGFYHGVLYEQNAQIALDAIGAFMREAFAAPKVSLKEHLIKITQLEKDTIAKGEIPFLQNCSFAFQRFMLHRFGRVSEGMSIGLRYGFDSGVTLDYIYKNTPNGQGALGKIIDKNYLNSIGWKGIRQRKVNAIATIREKIEHLRAQGEKVRILDIAGGPARYLIELAREYPDIEVLVRDYQEQNIEQGRALAKEFSLKNISYEQADAFDKQTYENRSYQPNIVIISGVFELFEDNALIQNAIDGVTSMMPKGSFLVYTGQPWHPQLEQIAYVLGNHQQKQWIMRRRSQYELDTLFAQSGFVKNSMKIDDWGIFTVSVATLTCKDA
>NZ_AP014724.1|WP_041961804.1|1325911_1326550_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MFKWLFFGFIVRPLVLFIFGVHVRGRENLPLDIPCIIVANHNSHIDTLVLMSLFPMRRIRALRPVAAADYFMKNRWIKWFSTHVIGIIALSRTVAKTHSHPLEAVRKALEEGQSVIIFPEGSRGEAGQMEKFKSGIGHLAKMAPFVPIIPIYIHGAGKVLPKGEALLVPFIIDIFIDKPLFIEDDTTHALTERLESRIKALEDVNQNNLTQV
>NZ_AP014724.1|WP_144440985.1|1326559_1327492_-|phosphatidate-cytidylyltransferase
MMDSIAMLFSGKSGIVIGVILGLLLLATLIVRVFFRTSTELKDRVQSWWIIVLAFVVGAMLHTTVAMFFFALISYLALKEYFTLIPTRRTDRRIIFYAYLSIVIQYWFAGIQWYGMFIIWIPVYLFLLLPFRQVLIGDTKGFLEHTSRVQWGLMMFVFGLSHIAYMMTLPTLNGHDVGGKELVLYVVLLTELNDILQYLWGKTLGKHKIIPKVSPNKTVEGFLGAFFTLSLLGVAFSFLTPFTWIQALFAGMLISSAGFIGDVVISMVKRDIGVKDSGNLLPGHGGILDRIDSLTYTAPLFFHYTYYLYY
>NZ_AP014724.1|WP_060826954.1|1327488_1328085_-|CDP-alcohol-phosphatidyltransferase-family-protein
MPTIYDLKPAFQSVLRPIVRILANKGMTANQITLAALGLSVVWGGLIALTKGALWTLWMLPIVLFVRMALNAIDGMLAKEHDMKSDLGAMLNEMGDVLSDTALYLPFAMIEGVLPLWVTLFVIASILTETAGILGAVIGKTRRYDGPMGKSDRAFVIGSTALVLGLGVTSHIWVNGVFMIATILASWTMLRRCQKGLA
>NZ_AP014724.1|WP_060825895.1|1328291_1329278_-|amidohydrolase-family-protein
MKTIDTHVHLLSSEVSFNRFYDKVALRFFAKRFGIDAKALTKEPYKAYTDALMNSVKTSEHIEKIVLFGVDAKVDDEGNVLHKDKTVCASNEDVATLYAHYPDLIIPFFSINPKRPDALELIEKYHALGFKGAKFLQNYWGVDTREARYRPYFEKLAALDLPLIIHVGSESSVHSYKTCESIEMVRQPLEVGVKVICAHMALSYEPRHIFKALSSNPKRFNDDYFTLLEMLKTHDNLYADVSALLTPVRAKALRHLSTQSDIHHKLLFGSDYPVPFTTMLNSYDITLLKRLCIAQEKNVFDRYVKAMMVYFPANHPIYSNYRKILHVA

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Crispr_ID: NZ_AP014724_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014724_5

1623378-1623799

Orphan

Consensus_repeat	Method
GTTTAAATACAAATCTTGTGTCGGTTCGAG	CRISPRCasFinder
GTTTAAATACAAATCTTGTGTCGGTTCGAG	CRT
GTTTAAATACAA-ATCTTGTGTCGGTTCGAG	PILER-CR

6 spacers

DEDDh

The CRISPR arrays of NZ_AP014724_5

>merge|NZ_AP014724|5|1623378-1623799|CRISPRCasFinder,CRT,PILER-CR
CTTTAAATACAAATCTTGTGTCGGTTCGAGGCATATTAGTAGCAAACGTATGGCGCATATTATAGTTTAAATACAAATCTTGTGTCGGTTCGAGTGTAAGTGATTGTATTAATTAAATAATAGCTACACTTGTTTAAATACAAATCTTGTGTCGGTTCGAGGTTGGCGACGTCTTAGTGTTGCCAAGATGTCCCAGTTTAAATACAAATCTTGTGTCGGTTCGAGAAAAGTCTTTATTCGCGATCGATATAATTTCAGCTTTGTTTAAATACAAATCTTGTGTCGGTTCGAGCCGTGCGGCTTTTTTACTGCCTTTGGCGTGTTGGTTGTTTAAATACAAATCTTGTGTCGGTTCGAGTGATAAGACACTCTACAACTCAGCGAGTGCGTCAGTTTAAATACAAATCTTGTGTCGGTTCGAG

>NZ_AP014724|5|5|1623378-1623799|CRISPRCasFinder
CTTTAAATACAAATCTTGTGTCGGTTCGAG	GCATATTAGTAGCAAACGTATGGCGCATATTATA
GTTTAAATACAAATCTTGTGTCGGTTCGAG	TGTAAGTGATTGTATTAATTAAATAATAGCTACACTT
GTTTAAATACAAATCTTGTGTCGGTTCGAG	GTTGGCGACGTCTTAGTGTTGCCAAGATGTCCCA
GTTTAAATACAAATCTTGTGTCGGTTCGAG	AAAAGTCTTTATTCGCGATCGATATAATTTCAGCTTT
GTTTAAATACAAATCTTGTGTCGGTTCGAG	CCGTGCGGCTTTTTTACTGCCTTTGGCGTGTTGGTT
GTTTAAATACAAATCTTGTGTCGGTTCGAG	TGATAAGACACTCTACAACTCAGCGAGTGCGTCA
GTTTAAATACAAATCTTGTGTCGGTTCGAG

>NZ_AP014724|5|1|1623378-1623799|CRT
CTTTAAATACAAATCTTGTGTCGGTTCGAG	GCATATTAGTAGCAAACGTATGGCGCATATTATA
GTTTAAATACAAATCTTGTGTCGGTTCGAG	TGTAAGTGATTGTATTAATTAAATAATAGCTACACTT
GTTTAAATACAAATCTTGTGTCGGTTCGAG	GTTGGCGACGTCTTAGTGTTGCCAAGATGTCCCA
GTTTAAATACAAATCTTGTGTCGGTTCGAG	AAAAGTCTTTATTCGCGATCGATATAATTTCAGCTTT
GTTTAAATACAAATCTTGTGTCGGTTCGAG	CCGTGCGGCTTTTTTACTGCCTTTGGCGTGTTGGTT
GTTTAAATACAAATCTTGTGTCGGTTCGAG	TGATAAGACACTCTACAACTCAGCGAGTGCGTCA
GTTTAAATACAAATCTTGTGTCGGTTCGAG

>NZ_AP014724|5|1|1623379-1623799|PILER-CR
TTTAAATACAAATCTTGTGTCGGTTCGAGG	CATATTAGTAGCAAACGTATGGCGCATATTATAG
TTTAAATACAAATCTTGTGTCGGTTCGAGT	GTAAGTGATTGTATTAATTAAATAATAGCTACACTTG
TTTAAATACAAATCTTGTGTCGGTTCGAGG	TTGGCGACGTCTTAGTGTTGCCAAGATGTCCCAG
TTTAAATACAAATCTTGTGTCGGTTCGAGA	AAAGTCTTTATTCGCGATCGATATAATTTCAGCTTTG
TTTAAATACAAATCTTGTGTCGGTTCGAGC	CGTGCGGCTTTTTTACTGCCTTTGGCGTGTTGGTTG
TTTAAATACAAATCTTGTGTCGGTTCGAGT	GATAAGACACTCTACAACTCAGCGAGTGCGTCAG
TTTAAATACAAATCTTGTGTCGGTTCGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014724.1\|WP_158509038.1\|1628869_1629022_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014724.1\|WP_060826138.1\|1617106_1618189_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
NZ_AP014724.1\|WP_060826139.1\|1618795_1620373_+\|cbb3-type-cytochrome-c-oxidase-subunit-I	unknown	unknown	unknown
NZ_AP014724.1\|WP_060826148.1\|1626571_1626847_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373705
NZ_AP014724.1\|WP_060826140.1\|1620365_1621367_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014724.1\|WP_060826150.1\|1627303_1627891_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|379158
NZ_AP014724.1\|WP_144440997.1\|1627983_1628556_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014724.1\|WP_060826144.1\|1624312_1624969_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014724.1\|WP_060826146.1\|1626148_1626367_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014724.1\|WP_060826152.1\|1628552_1628774_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014724.1\|WP_060826147.1\|1626369_1626588_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014724.1\|WP_060826141.1\|1621356_1621896_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NZ_AP014724.1\|WP_158509037.1\|1622655_1623309_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|273593
NZ_AP014724.1\|WP_060826149.1\|1626836_1627307_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014724.1\|WP_060826145.1\|1624984_1625662_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|119397
NZ_AP014724.1\|WP_060826137.1\|1616078_1616963_-\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
NZ_AP014724.1\|WP_060826135.1\|1614975_1615416_+\|DUF1295-domain-containing-protein	unknown	unknown	gnl\|CDD\|224931
NZ_AP014724.1\|WP_060826142.1\|1621904_1622666_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277331
NZ_AP014724.1\|WP_060826136.1\|1615541_1616018_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014724.1\|WP_060826962.1\|1618188_1618812_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222

Protein	Function_ID	Function_description	E-value
NZ_AP014724.1\|WP_060826138.1\|1617106_1618189_+\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	2.41457e-16
NZ_AP014724.1\|WP_060826141.1\|1621356_1621896_+\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	4.20376e-16
NZ_AP014724.1\|WP_158509037.1\|1622655_1623309_+\|HAMP-domain-containing-protein	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	5.13517e-30
NZ_AP014724.1\|WP_060826962.1\|1618188_1618812_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.3738e-88
NZ_AP014724.1\|WP_060826145.1\|1624984_1625662_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|119397	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response.	6.45653e-23
NZ_AP014724.1\|WP_060826137.1\|1616078_1616963_-\|3'-5'-exonuclease	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	1.65933e-30
NZ_AP014724.1\|WP_060826135.1\|1614975_1615416_+\|DUF1295-domain-containing-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	1.14194e-16
NZ_AP014724.1\|WP_060826142.1\|1621904_1622666_+\|metallophosphoesterase	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.3459e-56
NZ_AP014724.1\|WP_060826150.1\|1627303_1627891_+\|HNH-endonuclease	gnl\|CDD\|379158	pfam13392, HNH_3, HNH endonuclease. This is a zinc-binding loop of Fold group 7 as found in endo-deoxy-ribonucleases and HNH nucleases.	2.95268e-11
NZ_AP014724.1\|WP_060826148.1\|1626571_1626847_+\|hypothetical-protein	gnl\|CDD\|373705	pfam15275, PEHE, PEHE domain. This domain was first identified in drosophila MSL1 (male-specific lethal 1). In drosophila it binds to the histone acetyltransferase males-absent on the first protein (MOF) and to protein male-specific lethal-3 (MSL3).	0.000674308

>NZ_AP014724.1|WP_158509037.1|1622655_1623309_+|HAMP-domain-containing-protein
MQIKVKLLLWYLLVQSLILASFNYALFINVEHNLSENISGVIQTHEAIEHFLNTVWLLSPFCIVLSSFGGYFLIGRYFKPLQAMLHNMQTINAKELSGRIETHNNDDEISRLATAFNAMLERLEHSFTAIKAFNTQASHELRTPLTIMRGEIEIALRKERSDEEYRRILEVQLEEIQALQTLIEDMLLFAEGNASLSYEYFPKKQLPFSILNTAFEK
>NZ_AP014724.1|WP_060826142.1|1621904_1622666_+|metallophosphoesterase
MFEKGYEKLNLKRMMLSIEHLPSSFENFTIVHLSDLHVNAKTPLHALETLVAKINELHIDMVALTGDLFDAKPSRIRTQLEVLKQIKHPVYFVSGNHDLLFTCKTLRSEIEALGFTLLDNRIVTLHKEDARLQLMGLSDAFSAYFGIKRHEKELFATLDPHLPTLLLAHQPKDIRFAKHFRVDVQLSGHTHGGQIYPFGYIVRLFQPYLHGLHVKDKTQIFVTTGYGCWGFNLRFKAPSEVVIIRLVGAKDAD
>NZ_AP014724.1|WP_060826141.1|1621356_1621896_+|YceI-family-protein
MFTKTIVSLLAASLLCGTLFAKELHFQEGTIGAQTEILGDSNINPKSSHISANLSMDDTIESLKGEITLELLSLKSDNEKRDEHMYEALHVKTHPNTFFKLKEVVKEADGYHLIGILTLNNQPKEINTKAEITDQNGFVNLKGNFTIKMSAFGIEPPTLLFLSVRDDVVVSYDLILAKR
>NZ_AP014724.1|WP_060826140.1|1620365_1621367_+|hypothetical-protein
MFNVLFTLFVASEFCYYLLIAQTGIIEVFHSDVQTFFTLPLGGVLGSLLVYRSWGWLNTDQRKIIFFVGIQALCSFFYPSLNLAVLALLGVSLGMSAPLLIKVSKERMGEIAIALALTYALATALFTYAPILRGNLAIALSVTAFTCSFFLHRLPPHRVEIASERLSLYAVASMAIWAYLDANLFETLSRSLDIAIWREPTWHIIWVFHLIGMGAAYLLRDVFKEQHAFIIAFLFATSYALYAAREALLLSMVYPFVISYYNFVILKRLSKLGDLRLLGVIMVFTGWIAGGGGLLSALFGYTYVGVLFICVLLCAEMYGFIYQISQKRINNVH
>NZ_AP014724.1|WP_060826139.1|1618795_1620373_+|cbb3-type-cytochrome-c-oxidase-subunit-I
MEKFSSFIQKSFAISALFLLFGLAFGFEYSLNLLGYFLPSSTLSAVNARSAHISLMLYGFVPLMLSFLPFVLMEKENIHSEKGLEKLRVYFTLWCVFLVFMTISLLMGVHRGLAFYDFAYELNFILAFSGLFYILALYDYIKVYKVIPLWIKVSLYLVIASPIALLVLMNPVIGQVEKTVVGPHGDNTLGMSYTLIPIFYLLIKLHAKESFVAKYHAMWIIPLVGYIASVAHRIFIGELTYNQEWFFQYLTLCFVPLLLKWLKDANITFQNSPSLIIAVYAFLFVDIEGNILFIPSIRWLFHRNDLVVAHAHIAMGVGIFFMAMAVVSPYLKKLNERSFSLFYTLGFTLMLIALSMAGLMEAGFIQTDIHLLWTIRMLCGLFIILVTMGFFYPELGWRLEKLNALKLYHLAGFASDALGGLFLFVFAATLYPLLGFGFEGKYEYVVFAFMTTTGIIHLFALMHPLHALLLAKISAFNRIAVSSMFFSLYLAHQLGVEGMMIAVYDLVFASIYLILASTLQRSAYV
>NZ_AP014724.1|WP_060826962.1|1618188_1618812_+|ABC-transporter-ATP-binding-protein
MLEARGITHYYKNDLALDNVHFTAQKGEFIAIVGESGGGKSTLLSILSSLLRPTLGELFFEGKAYTQITNIDAFRQKEIGFIFQFHYLIGYLTILENIKLAAIDKKSPYIDTLFEQCGIEAIKNKYPDEISGGQRQRAAIVRALVNHPKVLFADEPTGNLDSHNSQNIYELFKSLSKSGTTLIIATHDRHVSAYADKIIEVNDGKIL
>NZ_AP014724.1|WP_060826138.1|1617106_1618189_+|ABC-transporter-permease
MVSLFFKALNRNRFKTFLIYLSITVAITAIFMITSISRGIIGMYSTMLKSEGDIIITQAKIADTFFSDVSVSLVSSVQTVAGIKEVYALILGASPINELPIAAIYGVSENRFKTYALTQGSYPKKGEVMLGKNIDARLHSPKSVSISNKMFTVSGIFENGVGFEDGGAVLNREDASAIFNKEASILLASIDKSADATSLIEHINALSPDIEAKTTHEFVDNYNQFKIIETSSNVISAVAFLMGLLGIASLISITINERRSEFGILRAIGKSSRFIMSMVVGETFIITCIGFISALLLSKGLLLMIAHIEKFQGYVNGELSVQTIVVVFGFSLFMALLGALLPAYSASKIDPIILIQRGAL
>NZ_AP014724.1|WP_060826137.1|1616078_1616963_-|3'-5'-exonuclease
MKIIVLDTETTGMFEKDRICQLSFLVLNEEFEIEEVHDALCKPPLPISYEAMAIHHITPEKVEGEPSCVQTRAYKRLLELNSPANILVIQNAAFDLSMLAKEGFTSQMSLIDTFRVLRAYYPLDGSFSLQYKRYQWGLYREEEALEQKLGIRINAHDALGDVIVLKYLFERLCDEHSIPKMILLCSEPIVLSHIPYGKNKGKKFIDVAKTDRQDLHYMLNSNGLDEDMKASILHALESTKEDITLTIGFGKYAGKTPLEVLEIDRNYLVWMVNKMDNLSSELKEAIEKVLVSYP
>NZ_AP014724.1|WP_060826136.1|1615541_1616018_+|hypothetical-protein
MKERDNIDIKLGGTSQQTAIKAADYLISLNIGFHVPNKTHRRNLLIAYAEKGLTLYGKAFDIVKSKNNINYDSIEDIRKNFDSIIIYEIKSTAKKTVKENFKGHFFSISTAELLTAQNIKGKYKFAFVNTINKTWEELTLEDILRKSKGIYPTWSIQF
>NZ_AP014724.1|WP_060826135.1|1614975_1615416_+|DUF1295-domain-containing-protein
MSSKRYSYLLVSLQFIFIARLLIEHGLHTPSNFALLIFLLGGGFGLYALKHNPLSNFNITPDIKANASLITTGAYRYIRHPMYFSLFVMMLGIVVSKPTLLSLFIYVLLVVTLFLKAYKEEMLWVEQSSEYRDYKQKTKRIIPFVL
>NZ_AP014724.1|WP_060826144.1|1624312_1624969_-|hypothetical-protein
MVGFLIVVVFVAGVFVGRYFIKRFFAKGKGKLYTYFMSTCIAIGFCFFGIMAVAIYDTSKNPRITDPVVKDQYFKEDQKTVMTYFNHIMSNQAFAEMTMTDFRQSPSISKARQYASMYADMSKEFFAGEYRTPELHDKEIKKQVSSIRQDYSTIYNINRKQCEKFVEFMDTKKPSLLDDIKQYDRQTKEMLDTTVTSMHTIGKSFGLKIQDDKWVVSQ
>NZ_AP014724.1|WP_060826145.1|1624984_1625662_-|helix-turn-helix-domain-containing-protein
MLETRIIQARNYAKLTQEDLSNSLKIGKRTLADYEKGTSEPKASTIVDIAEICNINVYWLLTGKGEMLLGEQGSLPITTNRVEDDNSVSVNYYPDVIAAAGYGAINEGQYVPQPMRLDRRFLEQLVNVRRFDKLDIITVFGDSMEPYISNGETVLIERHDDAKNGETVIANINGSVYIKRIKMDPFKKWVKLLSENSHYDEIELHDDELQYLTIVGIVRAKIRIF
>NZ_AP014724.1|WP_060826146.1|1626148_1626367_+|hypothetical-protein
MGKALYILNELKNKDVLDMQQIGIEYEDVDDAIAELAEFREAFEVMKKLEQELKGINPELMLLKLVTAALKE
>NZ_AP014724.1|WP_060826147.1|1626369_1626588_+|hypothetical-protein
MFENTKAILHSIVEGKPPRKGTKTYAKIDDALFEVFTAKQKLQAAEKEIAELKERAACGQKFKAEANDESKL
>NZ_AP014724.1|WP_060826148.1|1626571_1626847_+|hypothetical-protein
MKANFDNMRIFTTGSMNALGEVLKDYVIDSDDIDDDVKRKITNAFNYAGQRVNVLNCLYDDNVKDDVNDLSDVIEVELLKHEKSEEDDDEL
>NZ_AP014724.1|WP_060826149.1|1626836_1627307_+|hypothetical-protein
MSYDIFEKKAALNSEFEVIPTKIQLYAEGVGFDANGYMRYDGLTYPTDTVKLSSLPLKIRGLFAPQKYDVVTPGTRDIDTTGGKTSPLQIDGNLINLSKILMEQLENITNPEKIKDVDIIAELKKANAVCNVADKIINVVDLSLRVEIFKDKKLCR
>NZ_AP014724.1|WP_060826150.1|1627303_1627891_+|HNH-endonuclease
MNYTHTQIAFLKKHETVERKELTELFNAEFGTQQSFEAIKQKCKVLGLKTGRDGCFKKGHTPPNKGTKGLAGANKTSFKKGDAPHNTKAVGTITKIKDSNGYWYTNIKVAEPNKWQMLHTYIWEQEHGKIPKGYCVIFKDRDTENMSLDNLMLVSRSELARLNQKYAAIDPSLREVALQVVKIQSAVIKKGGGHR
>NZ_AP014724.1|WP_144440997.1|1627983_1628556_+|hypothetical-protein
MTEPPKPYSSDDFTPRKDESTQDNDDDFEHMLYLMQQSNGFVEDEYLEESTKEEHVETVKPKVCACCQEPKSDDAFGTLRNGELRNICKACHGKKISLSRCKIKEVTPITKELEMQTDHSTQIKARKDLSMAMGSDAGDDKVAIMKLSVFHAALGMAYERGVAEGKTFADLTITEVEPPVILDEVLGERA
>NZ_AP014724.1|WP_060826152.1|1628552_1628774_+|hypothetical-protein
MSKIVILKVKEYFNEEQLAALASEEEATITVTGTLEAVYFNAEDYYNVIEAAQMFDQMTENTDDEDGRNVQND
>NZ_AP014724.1|WP_158509038.1|1628869_1629022_+|hypothetical-protein
MLMIEKSDEGFSLTVAGDASHILAELTILVEVVQEKIKEIDVREILNDPI

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Crispr_ID: NZ_AP014724_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014724_6

1659865-1660608

TypeI-B

Consensus_repeat	Method
GTTTAAATACAA-ATCTTGTGTCGGTTCGAG	PILER-CR
GTTTAAATACAAATCTTGTGTCGGTTCGAG	CRISPRCasFinder
GTTTAAATACAAATCTTGTGTCGGTTCGAG	CRT

11 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,cas6

The CRISPR arrays of NZ_AP014724_6

>merge|NZ_AP014724|6|1659865-1660608|PILER-CR,CRISPRCasFinder,CRT
GTTTAAATACAAATCTTGTGTCGGTTCGAGTCGATTTTTTGCGTGACCTACAATGTCAGCCACAATTGTTTAAATACAAATCTTGTGTCGGTTCGAGAAAACAATTATAGAAGAGGCAATAAGAAAACCGAGTTTAAATACAAATCTTGTGTCGGTTCGAGCAAGGACGGATACGCCCAACCTAGATAAAAAAGGTAGTTTAAATACAAATCTTGTGTCGGTTCGAGCCCATTAAGTTCTATTTCTTCTCTTACTTCATGGGTTTAAATACAAATCTTGTGTCGGTTCGAGATTTTTCAGTCTCTTTTCTTTTGCCTTCTAAATAGTTTAAATACAAATCTTGTGTCGGTTCGAGTTTATTTTGAATATCCATACTGTCTTTATGATTAAGTTTAAATACAAATCTTGTGTCGGTTCGAGTAAAAGAACTTTATCAAGTAGATTGGTTTGAAAAGTTTAAATACAAATCTTGTGTCGGTTCGAGGTTATAGCTTTCGTCCCAAGAATAAGTAGTTGAAGGTTTAAATACAAATCTTGTGTCGGTTCGAGCTTCGCAAGAGATTTTAAAGTGGGATAAAGCAGGGTTTAAATACAAATCTTGTGTCGGTTCGAGGATATGTTAAAAACTGTTTAGACGCAACCGTCAAATCGTTTAAATACAAATCTTGTGTCGGTTCGAGGCGCTTCTCCAACAACATAATCAATAGCACTAACGTTTAAATACAAATCTTGTGTCGGTTCGAG

>NZ_AP014724|6|2|1659865-1660608|PILER-CR
GTTTAAATACAAATCTTGTGTCGGTTCGAG	TCGATTTTTTGCGTGACCTACAATGTCAGCCACAATT
GTTTAAATACAAATCTTGTGTCGGTTCGAG	AAAACAATTATAGAAGAGGCAATAAGAAAACCGA
GTTTAAATACAAATCTTGTGTCGGTTCGAG	CAAGGACGGATACGCCCAACCTAGATAAAAAAGGTA
GTTTAAATACAAATCTTGTGTCGGTTCGAG	CCCATTAAGTTCTATTTCTTCTCTTACTTCATGG
GTTTAAATACAAATCTTGTGTCGGTTCGAG	ATTTTTCAGTCTCTTTTCTTTTGCCTTCTAAATA
GTTTAAATACAAATCTTGTGTCGGTTCGAG	TTTATTTTGAATATCCATACTGTCTTTATGATTAA
GTTTAAATACAAATCTTGTGTCGGTTCGAG	TAAAAGAACTTTATCAAGTAGATTGGTTTGAAAA
GTTTAAATACAAATCTTGTGTCGGTTCGAG	GTTATAGCTTTCGTCCCAAGAATAAGTAGTTGAAG
GTTTAAATACAAATCTTGTGTCGGTTCGAG	CTTCGCAAGAGATTTTAAAGTGGGATAAAGCAGG
GTTTAAATACAAATCTTGTGTCGGTTCGAG	GATATGTTAAAAACTGTTTAGACGCAACCGTCAAATC
GTTTAAATACAAATCTTGTGTCGGTTCGAG	GCGCTTCTCCAACAACATAATCAATAGCACTAAC
GTTTAAATACAAATCTTGTGTCGGTTCGAG

>NZ_AP014724|6|6|1659865-1660608|CRISPRCasFinder
GTTTAAATACAAATCTTGTGTCGGTTCGAG	TCGATTTTTTGCGTGACCTACAATGTCAGCCACAATT
GTTTAAATACAAATCTTGTGTCGGTTCGAG	AAAACAATTATAGAAGAGGCAATAAGAAAACCGA
GTTTAAATACAAATCTTGTGTCGGTTCGAG	CAAGGACGGATACGCCCAACCTAGATAAAAAAGGTA
GTTTAAATACAAATCTTGTGTCGGTTCGAG	CCCATTAAGTTCTATTTCTTCTCTTACTTCATGG
GTTTAAATACAAATCTTGTGTCGGTTCGAG	ATTTTTCAGTCTCTTTTCTTTTGCCTTCTAAATA
GTTTAAATACAAATCTTGTGTCGGTTCGAG	TTTATTTTGAATATCCATACTGTCTTTATGATTAA
GTTTAAATACAAATCTTGTGTCGGTTCGAG	TAAAAGAACTTTATCAAGTAGATTGGTTTGAAAA
GTTTAAATACAAATCTTGTGTCGGTTCGAG	GTTATAGCTTTCGTCCCAAGAATAAGTAGTTGAAG
GTTTAAATACAAATCTTGTGTCGGTTCGAG	CTTCGCAAGAGATTTTAAAGTGGGATAAAGCAGG
GTTTAAATACAAATCTTGTGTCGGTTCGAG	GATATGTTAAAAACTGTTTAGACGCAACCGTCAAATC
GTTTAAATACAAATCTTGTGTCGGTTCGAG	GCGCTTCTCCAACAACATAATCAATAGCACTAAC
GTTTAAATACAAATCTTGTGTCGGTTCGAG

>NZ_AP014724|6|2|1659865-1660608|CRT
GTTTAAATACAAATCTTGTGTCGGTTCGAG	TCGATTTTTTGCGTGACCTACAATGTCAGCCACAATT
GTTTAAATACAAATCTTGTGTCGGTTCGAG	AAAACAATTATAGAAGAGGCAATAAGAAAACCGA
GTTTAAATACAAATCTTGTGTCGGTTCGAG	CAAGGACGGATACGCCCAACCTAGATAAAAAAGGTA
GTTTAAATACAAATCTTGTGTCGGTTCGAG	CCCATTAAGTTCTATTTCTTCTCTTACTTCATGG
GTTTAAATACAAATCTTGTGTCGGTTCGAG	ATTTTTCAGTCTCTTTTCTTTTGCCTTCTAAATA
GTTTAAATACAAATCTTGTGTCGGTTCGAG	TTTATTTTGAATATCCATACTGTCTTTATGATTAA
GTTTAAATACAAATCTTGTGTCGGTTCGAG	TAAAAGAACTTTATCAAGTAGATTGGTTTGAAAA
GTTTAAATACAAATCTTGTGTCGGTTCGAG	GTTATAGCTTTCGTCCCAAGAATAAGTAGTTGAAG
GTTTAAATACAAATCTTGTGTCGGTTCGAG	CTTCGCAAGAGATTTTAAAGTGGGATAAAGCAGG
GTTTAAATACAAATCTTGTGTCGGTTCGAG	GATATGTTAAAAACTGTTTAGACGCAACCGTCAAATC
GTTTAAATACAAATCTTGTGTCGGTTCGAG	GCGCTTCTCCAACAACATAATCAATAGCACTAAC
GTTTAAATACAAATCTTGTGTCGGTTCGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014724.1\|WP_060826963.1\|1669809_1670289_+\|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl\|CDD\|237976
NZ_AP014724.1\|WP_060825903.1\|1657158_1657383_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014724.1\|WP_060826183.1\|1667274_1668978_-\|hypothetical-protein	cas8b1	mkCas0174_cas8b1_CAS-I-B	unknown
NZ_AP014724.1\|WP_060825907.1\|1653629_1655627_+\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|273790
NZ_AP014724.1\|WP_158509035.1\|1656259_1657150_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222877
NZ_AP014724.1\|WP_060826181.1\|1665626_1666340_-\|CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|187824
NZ_AP014724.1\|WP_060826180.1\|1663422_1665627_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|187770
NZ_AP014724.1\|WP_144440987.1\|1658528_1658798_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014724.1\|WP_060825905.1\|1655999_1656203_+\|tail-protein-X	unknown	unknown	gnl\|CDD\|283209
NZ_AP014724.1\|WP_060826179.1\|1662931_1663426_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_AP014724.1\|WP_060826176.1\|1660773_1661085_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_AP014724.1\|WP_060825902.1\|1657379_1657646_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014724.1\|WP_144440988.1\|1657635_1658190_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381602
NZ_AP014724.1\|WP_060825900.1\|1658149_1658581_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014724.1\|WP_060826177.1\|1661081_1662086_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NZ_AP014724.1\|WP_060826178.1\|1662109_1662922_-\|antirepressor	unknown	unknown	gnl\|CDD\|214989
NZ_AP014724.1\|WP_060825898.1\|1658892_1659690_+\|DNA-adenine-methylase	unknown	unknown	gnl\|CDD\|223415
NZ_AP014724.1\|WP_060825906.1\|1655619_1656003_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377754
NZ_AP014724.1\|WP_060826184.1\|1668974_1669691_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_AP014724.1\|WP_060826182.1\|1666341_1667262_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818

Protein	Function_ID	Function_description	E-value
NZ_AP014724.1\|WP_060826963.1\|1669809_1670289_+\|Cys-tRNA(Pro)-deacylase	gnl\|CDD\|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	8.2697e-69
NZ_AP014724.1\|WP_060825907.1\|1653629_1655627_+\|phage-tail-tape-measure-protein	gnl\|CDD\|273790	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region. This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions].	2.54124e-28
NZ_AP014724.1\|WP_158509035.1\|1656259_1657150_+\|hypothetical-protein	gnl\|CDD\|222877	PHA02561, D, tail protein; Provisional.	2.14406e-34
NZ_AP014724.1\|WP_060826181.1\|1665626_1666340_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187824	cd09693, Cas5_I, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.24078e-11
NZ_AP014724.1\|WP_060826180.1\|1663422_1665627_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|187770	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I.	4.88749e-70
NZ_AP014724.1\|WP_060825905.1\|1655999_1656203_+\|tail-protein-X	gnl\|CDD\|283209	pfam05489, Phage_tail_X, Phage Tail Protein X. This domain is found in a family of phage tail proteins. Visual analysis suggests that it is related to pfam01476 (personal obs: C Yeats). The functional annotation of family members further confirms this hypothesis.	2.23957e-05
NZ_AP014724.1\|WP_060826179.1\|1662931_1663426_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.13291e-56
NZ_AP014724.1\|WP_060826176.1\|1660773_1661085_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.10687e-19
NZ_AP014724.1\|WP_060826184.1\|1668974_1669691_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.23777e-10
NZ_AP014724.1\|WP_144440988.1\|1657635_1658190_+\|hypothetical-protein	gnl\|CDD\|381602	cd13399, Slt35-like, Slt35-like lytic transglycosylase. Lytic transglycosylase similar to Escherichia coli lytic transglycosylase Slt35 and Pseudomonas aeruginosa Sltb1. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	0.00634213
NZ_AP014724.1\|WP_060826177.1\|1661081_1662086_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	6.41835e-141
NZ_AP014724.1\|WP_060825898.1\|1658892_1659690_+\|DNA-adenine-methylase	gnl\|CDD\|223415	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair].	1.52371e-36
NZ_AP014724.1\|WP_060826178.1\|1662109_1662922_-\|antirepressor	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	7.69528e-11
NZ_AP014724.1\|WP_060825906.1\|1655619_1656003_+\|phage-tail-protein	gnl\|CDD\|377754	pfam06995, Phage_P2_GpU, Phage P2 GpU. This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein, which is thought to be involved in tail assembly.	2.87575e-31
NZ_AP014724.1\|WP_060826182.1\|1666341_1667262_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	1.53906e-40

>NZ_AP014724.1|WP_060825898.1|1658892_1659690_+|DNA-adenine-methylase
MKGFCMERLKEYHNVPRVAPFAWVGGKSKLADKIIKEFPEHQRYVEVFGGDLNVFYRKPRSKIEVVNDINSDLVNLHLQIQKRPQSLHLYLNRMFVSREMFTRIKTKALHPRNDIERAAFYYYLIAQSFGSKGTDFAMPRGSKPRVKNLDRDFRVWSKRLQGVCVENMDFKKLITTYDHPDTLFYLDPPYVGTESHYKTPSGFNIDQHIALAEMLRGIKGRFVLSYNDCEVVRDLYKGFEIIEVSTLYSLRGGSQKQAKEVIIKG
>NZ_AP014724.1|WP_144440987.1|1658528_1658798_+|hypothetical-protein
MRQVAIMLVLFLIAVLGSGCGVDQPQTPQIDQFVNVPQRCVIELDPMPVIKPKTFQKGEELEQNEWSYGNYLIMKEDNEKVRAKVKKCQ
>NZ_AP014724.1|WP_060825900.1|1658149_1658581_+|hypothetical-protein
MEMFKTILSLGTGSLWKGVSILLAGALIAMSLFILEEEVSLRSTISDNEKVIKEQGGELTKKESKIKELQEKVSLKQAEIGVQNATIAANKADTEKNLKAVNDELLKISKKYNDFKDEVKNWKGDQNASSCDNARAFLNSRTW
>NZ_AP014724.1|WP_144440988.1|1657635_1658190_+|hypothetical-protein
MAVNLFALERCALLTQKVRVAHFKEFGTSFPYQYAIAQLEQESGCRASISNDGVGSQGVAQITYRWWKNVLDKEGITEIASVQGSLRAQAAIMRYLHEQGRPLWVTYQRYNGGDWVLKEIRKAGAENWAKAKAQCTRGDSHFTLKSGKIQTRNNCEINYEYSQNIYTLGRQYGDVQDNSQFRYW
>NZ_AP014724.1|WP_060825902.1|1657379_1657646_+|hypothetical-protein
MKKLWFEAVLACLCLAVIVLHVFGDDQHFVQLIIAKMVLINFGLIHAYIAGRLLLGKVEWCCTSSFSPKNVGRIVLYAVIVYSYSIGG
>NZ_AP014724.1|WP_060825903.1|1657158_1657383_+|hypothetical-protein
MQSKRASFYESLFNTFSGFFISLALAYFVFPLFGMPKSMESSFWIVMIFTVSSIGRNYLIRRVFNFLHVKKERK
>NZ_AP014724.1|WP_158509035.1|1656259_1657150_+|hypothetical-protein
MKKYILGIEYTDAKDNSADSFKIRFHGENFAPPEYKDILKVWLGFEGHLWYIGSFSVLKSRLDYQTKVVSITGTPVNFSTQIKEKRTMSYENASLDDILKKIAKRNDLSVKNSFYDLMFLHESQNDESDLAFMQRIAREIGATFSIKNDTILFCPKKGGDKESELPKFTINADLTDNLYLEMLDKTLYNSASASWQSTKENKVMSVSIGSGTPALNVRGNFQSEAEARVKLKAELNLKNKGTVRGGFDYEGLNIVAGGKLTILNLPNAKWGKEFDVQQVRHTWGDNGYTISVEFEN
>NZ_AP014724.1|WP_060825905.1|1655999_1656203_+|tail-protein-X
MKHVIATQNDRLDTIVYTYYGTLEPLNEVMLANAHLMSKALLDAGDKVYLPEYTATVASESDGISLW
>NZ_AP014724.1|WP_060825906.1|1655619_1656003_+|phage-tail-protein
MTNIMAMIGDFIFSLEKKPFDALSHTKEYSFAEIPKVNYYTGEQSVGKDIEELTLSGSIITLKGGLNPLARLFAIADQKQAVPFIYGYGEVLGDFKITKVKEDRSLFLPDGRSVKVVFSVEMKRVRE
>NZ_AP014724.1|WP_060825907.1|1653629_1655627_+|phage-tail-tape-measure-protein
MSKMFALGIALTAKDMFSPAFSSLGSAIRNSTKDLKNFGTASAAIGTGLKGAQLATQGAVGEVIKSYADLEDAQIQLQNTLMKSDGSVSPFFKGINEEATKLGNALPGTTADFYAMASKLKSLGVEEQSIIGGALKSAAYLGVVLKIPYEEAAVSTAKFREALGIADSDLLVFIDDIQRLAHMGVEVGEMKFAFSKVGATMKGLGMMGLQAARDVEPLIGLLIKSGFSGETVGTNLGNMIESAVNFKGSKELKKQGIELTFNDTTGKFLGVENMIKELEQLKEIESDAARLNVIESLFGKGEAASMANVLIQKGTGGISEFNKKLKEQADLNMRVGNTTKSLRNTWEALTGTFSNLLAFLGEGIAPELKSVTNFLGDATAALADLTQEYPNVTKFLGGALVGFVALSGGLGTAAIAVSMFTTVLGVLGVTSMVTFGWIIAGAALIAGAATLIIANWDTLKGWFVSFGTWLADLLGGAATAIYAQFEPLFNWISKAFTWAFQSFNVADIFSSIAQSVVNIFSSLFSWIGSQITGAIEGFNTFASFITDLFTNPITTITGLFDSFFNWVGGKFQWVLDSVNGVKSFFGAESNVQQATSPSQQTIPIMARAGNIPAQGSTSNSVSVTIQNPNFSSPEEASRTQAQIDEQVRKALREIQRDQADRSFND
>NZ_AP014724.1|WP_060826176.1|1660773_1661085_-|CRISPR-associated-endonuclease-Cas2
MKKDTTNYNYVFLFYDIADEFSDVGKYRVSKVFKICKKYLKHHQKSIFRGNITPANQIKLQSELKKVIDQEIDFVTIIKMLSSGSFSEENLGNPKKESEGIFI
>NZ_AP014724.1|WP_060826177.1|1661081_1662086_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MAKNHTRYIFSMGELSRKDNSIAFRNEKGNFYLPIEETRELYCLNEVSFNTKFLDFIAKAGITLHIFNYHGNYSGTFYPKAYLVSGDLNVKQALCFVNERLSIARNIVSAIAQNIHEVLYHYYRHDKKELKLYLDWLKNDVPSLLHVTMKVEQILFVEGQIWSRFYDSFKYFLPEDFVMNKRVKRPPDNPMNALISFGNTLLYTKTIASIYHTHLNQSISFLHSPREGRFSLSLDLSEAFKPVIVFKTIFDLVGRKKLQVLKHFDKNLNYALLNEEGKKIFIDAFEERMNETFLHVKLKRKVTYKHCLKLDGYKLIKTIVEGREFTPFLLKEKM
>NZ_AP014724.1|WP_060826178.1|1662109_1662922_-|antirepressor
MEKIQLFESKQIRSHWDEEHELWYFSVIDAIEVLTQSDRPRKYWSDLKNKLKKEGSELSEKIGQLKMQASDGKMRATDVATTEQLLRLIQSIPSPHVEPFKQWLAKVGYERIESMQDPEKSIDQAMQDYLKLGYTEKWINQRLKSIEVRKELTDEWKARGVEEGKEFAQLTDIISKAWSGHTTQEYKTLKNLQKENLRDNMTNLELVLTMLAEATTTEISKEKKPKRFDESQKVAKQGGTIAGNTRKAIEKKTGKSVVTKQNAKTLLEKK
>NZ_AP014724.1|WP_060826179.1|1662931_1663426_-|CRISPR-associated-protein-Cas4
MNNITGTLISYYFICKTKLWLHANRINLEDNSEDVRIGKVLHEISEEKAKKAEVKIDNVKIDKITKEYLVELKKSDSDPEAVKWQVLLYLYKLKGKGIERKGKVEYNEKNHNTKSEIIELDDANEKELLSVLEAITTLITLPTPPLPKFENKCKKCAYFDYCFI
>NZ_AP014724.1|WP_060826180.1|1663422_1665627_-|CRISPR-associated-helicase/endonuclease-Cas3
MEIIAKTSNEQYQTFEEHTQWVVEEALNQIDPQILHKVSICTGWSEQKIRDLIFFSAYFHDIGKATVEFQETINNGKKSYHPLYGASLLLHIKDFVYKDIGENNLLFSIVLSHHSLFPKQYDSANYNFTFLPQYLTLLENYSLLYQKTFNEICPYIFEFKELKRDLYKQYINISEKRLADIQSCFKFRVLYSYVSGILNLADWLASARFTQTKPTTTFLALPTKENFVTHLTFDKLRPFQEELSLLNKSVLVEIPTGEGKTEGSLLWAIYNLYNQNTKIIYTLPTQTTSNKLYDRIQNFFDKEECGLIHSTAKIFLEKAYEKENGIVDDVFQSDFLISKSFNKPITVSTIDSLLKYFINIGRFNIATKNFLNSVIIIDEVHAYDFKLMGFLKRFLELCQEYDVRVCLMSASIPNQLKKLLNIQTYLTITQNDLFQKKANDIIKKEYELDDDFDFIKEKFKESKNILIIRNTVKSAAKIYKYLKDEFSLKDEEIMLYHSTFKKIDKQKKEEMIFEKLKQKKPFILVATQIVEISLDIDFDVMFTDNAPIDGLIQRFGRVNRKKDTDKKGEIYIYKYEKKFPYQEIELLKLTFETIENGYFELGKYVEWLNIVYDKLFEEDIATNNKITRLFKSAYEKYDVTIKNLHGINQSSDNYDLRDIPPESQKNDYWLYDDFMDEKKRTFDYTISLPFYYEKSYLHVTQEKTFYKVLKLNYSFNEGIILEDSHNGFYEFGGE
>NZ_AP014724.1|WP_060826181.1|1665626_1666340_-|CRISPR-associated-protein-Cas5
MEAIRFEVEGLLNSFRVPFFRTYHKTFLAPPKTTIIGFLCNIALKSQKEFFEILNQELIDVSVIIDEINGKTKDLWSYKTLEKGNMGKSVIRRDKLFLSKYTIYLSIKNKTLFDEIYSALKNPKNTPALGLDDELILIKNVTIIDALVLNPTNRINSVFLNKAYSYKAFIKDPTQPLELPTPNLTPIKFNAFDKKGMRISKEVKEEYPQVEFINCEIELQNVTSYIDKEKENKMVFY
>NZ_AP014724.1|WP_060826182.1|1666341_1667262_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MFLNIAYITKVNVASLNGGEGSGGNVTVMKKISNANGDEFAYVSGQALRRYMKETLMQLGEKISSVDEDGNPTVEENGKYPSLNAKIDDKQREKIFKSVCDLDLFGFMLPKGGRRWSPIKVSPMVSIFPYKGEYDYLTRKQKTEDESKKSGNIVQVEIDTLNFMRGNIMINLSHIGNEINEYTYEVKSILSDEEKKQRLNVFLDAIKSFNGGAKQARNLEDIAPKFIIVAKQKTGNPFLLNALSVDSDGSIDIETIQEALKDNKPESYTIGITKGIFTNEAEIRSSFDNVVSVAQALEEYKNNLGA
>NZ_AP014724.1|WP_060826183.1|1667274_1668978_-|hypothetical-protein
MKEKSLFDSDNKRVTKIFTCKDFFYNNGIVNLYQFLQNKDFDITFSLDQNELTLEFDAQKEDQVYTQILNSFLKDNKIVYQTDNDRWYFDEIKMDFIVDKKFDTKGGQKNDLRNGVYLYKKISELGLSREEVEKLYLDFCERTKLKPETESNGTLKVPNKNNEVIVAIALDTAIERFSQYFASDNILSIDSKIHSFEDGQDYFHDMLKQPQTYKIDKWNALMYWFGGRVQRFYNYSYFIYPNSSNVEALNTFKKFLQINDNRQEYRNDDGKVVTTSSNIDFFNVLRKDDIVNKYFYISTSAEEFEMKFFMYLFSVIYHIESEYESLQDEDLAVLFDDDTLENSKILFELLQYMSFVIYTDDGTFKTSLSEYTKAYRLIQFFMKLKEESLFKYLGHVFQVFSLSQSKDEVNLNLQHWCQKILSFNNVRKEYFVASFSILKNNSQGFGKELFSFEQSYLKNILGGSEMGIHENAKKIGDGVGFFCAELGDKDLLFKLRSVKNYKQLVSYFKDLKFSSLKNADKARFSNEFNESLENLLVNVEQNWEIARDYIAIYAIDKFKTVSFAKTK
>NZ_AP014724.1|WP_060826184.1|1668974_1669691_-|CRISPR-associated-endoribonuclease-Cas6
MRYFELRCKAFIKRDIAFEKSFELLSKYISFSMYQEGKGEVHQKEGFKYYVFGGLLPIEKEKVYKQGNLYSFTIRSLDEALMDTLQTTLRQNINNENLLVVEAHKKIISQFFITELYSATPVIVSISNGKYWTTNESGDIVQLQRQLHENAEKKYQSFFGESLHVNQSFIQLIEIKNKVPQNILITKDGKSIRFFGNKFKIVPNEDDVSQKLAFVALACGAGEKNSYGGGFMLGKGIR
>NZ_AP014724.1|WP_060826963.1|1669809_1670289_+|Cys-tRNA(Pro)-deacylase
MSLKKTNAARFLDTLKLPYEMSSYEVDEEDLSAVHAAQSLGVAPECVFKTLVARDEAKRILVACIPAAEEIDLKALAKVAKAKRCELVAVKELLGLTGYIRGGCSPLAMKKHYPTFIDASVHRHEKVYVSAGLRGVQLHLAPSVLIEATKALCETIVKA

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Crispr_ID: NZ_AP014724_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014724_7

2125601-2126560

Orphan

Consensus_repeat	Method
CTTTAAATACAACAATTTGTGTCGGTTTGAG	PILER-CR
CTCAAACCGACACAAATTGTTGTATTTAAAG	CRISPRCasFinder
CTCAAACCGACACAAATTGTTGTATTTAAAG	CRT

14 spacers

The CRISPR arrays of NZ_AP014724_7

>merge|NZ_AP014724|7|2125601-2126560|PILER-CR,CRISPRCasFinder,CRT
CTCAAACCGACACAAATTGTTGTATTTAAAGAATGTATGCAGGGATTCAAGATCATGGCGGCGTTGCCTCAAACCGACACAAATTGTTGTATTTAAAGCTAACGGGGATGTATTTCAACTTACTACATCGACGACTCAAACCGACACAAATTGTTGTATTTAAAGACGTGTTCATTGCAGAGTGTGAACAAGAGTACAACACTCAAACCGACACAAATTGTTGTATTTAAAGAGTAAAGAGTTATTGAGTGAAGTATTTGCAGTAAATCTCAAACCGACACAAATTGTTGTATTTAAAGATGGAAGAGGTTAGTTCCCCTTTTGGATATAAATTTCTCAAACCGACACAAATTGTTGTATTTAAAGTTAAATCAAAAAGCGATAAATCAATCAAAGAAGAGACTCAAACCGACACAAATTGTTGTATTTAAAGGCGTAAACGGTTTTTTTTGTAACTCCGCCGATGACTCTCTAACCGACACAAATTGTTGTATTTAAAGCGCATTGAAACGAAAACGGTATCGGCTTTAACGCCTCAAACCGACACAAATTGTTGTATTTAAAGACAACAACAAGTGCAAAATGGAGAAAGATTCTAACTCAAACCGACACAAATTGTTGTATTTAAAGAAATATTCCATAAATGCCCGTGCTTTCGATCTTTCTCAAACCGACACAAATTGTTGTATTTAAAGTTTGTTTATCAATTCAGCTAATTATGAAGCGTTAGCTCAAACCGACACAAATTGTTGTATTTAAAGAGTACCACATGACAAAAGATTTAAACCTATCTATCTCCTCAAACCGACACAAATTGTTGTATTTAAAGCACATGAAAAACTACGAACTTTTACAATACTATCCTCAAACCGACACAAATTGTTGTATTTAAAGAATTTAAAGCATAATGAAAACGTGAAAATCTATCACTCAAACCGACACAAATTGTTGTATTTAAAG

>NZ_AP014724|7|3|2125601-2126560|PILER-CR
CTCAAACCGACACAAATTGTTGTATTTAAAG	AATGTATGCAGGGATTCAAGATCATGGCGGCGTTGC
CTCAAACCGACACAAATTGTTGTATTTAAAG	CTAACGGGGATGTATTTCAACTTACTACATCGACGA
CTCAAACCGACACAAATTGTTGTATTTAAAG	ACGTGTTCATTGCAGAGTGTGAACAAGAGTACAACA
CTCAAACCGACACAAATTGTTGTATTTAAAG	AGTAAAGAGTTATTGAGTGAAGTATTTGCAGTAAAT
CTCAAACCGACACAAATTGTTGTATTTAAAG	ATGGAAGAGGTTAGTTCCCCTTTTGGATATAAATTT
CTCAAACCGACACAAATTGTTGTATTTAAAG	TTAAATCAAAAAGCGATAAATCAATCAAAGAAGAGA
CTCAAACCGACACAAATTGTTGTATTTAAAG	GCGTAAACGGTTTTTTTTGTAACTCCGCCGATGACT
CTCTAACCGACACAAATTGTTGTATTTAAAG	CGCATTGAAACGAAAACGGTATCGGCTTTAACGC
CTCAAACCGACACAAATTGTTGTATTTAAAG	ACAACAACAAGTGCAAAATGGAGAAAGATTCTAA
CTCAAACCGACACAAATTGTTGTATTTAAAG	AAATATTCCATAAATGCCCGTGCTTTCGATCTTT
CTCAAACCGACACAAATTGTTGTATTTAAAG	TTTGTTTATCAATTCAGCTAATTATGAAGCGTTAG
CTCAAACCGACACAAATTGTTGTATTTAAAG	AGTACCACATGACAAAAGATTTAAACCTATCTATCTC
CTCAAACCGACACAAATTGTTGTATTTAAAG	CACATGAAAAACTACGAACTTTTACAATACTATC
CTCAAACCGACACAAATTGTTGTATTTAAAG	AATTTAAAGCATAATGAAAACGTGAAAATCTATCA
CTCAAACCGACACAAATTGTTGTATTTAAAG

>NZ_AP014724|7|7|2125601-2126560|CRISPRCasFinder
CTCAAACCGACACAAATTGTTGTATTTAAAG	AATGTATGCAGGGATTCAAGATCATGGCGGCGTTGC
CTCAAACCGACACAAATTGTTGTATTTAAAG	CTAACGGGGATGTATTTCAACTTACTACATCGACGA
CTCAAACCGACACAAATTGTTGTATTTAAAG	ACGTGTTCATTGCAGAGTGTGAACAAGAGTACAACA
CTCAAACCGACACAAATTGTTGTATTTAAAG	AGTAAAGAGTTATTGAGTGAAGTATTTGCAGTAAAT
CTCAAACCGACACAAATTGTTGTATTTAAAG	ATGGAAGAGGTTAGTTCCCCTTTTGGATATAAATTT
CTCAAACCGACACAAATTGTTGTATTTAAAG	TTAAATCAAAAAGCGATAAATCAATCAAAGAAGAGA
CTCAAACCGACACAAATTGTTGTATTTAAAG	GCGTAAACGGTTTTTTTTGTAACTCCGCCGATGACT
CTCTAACCGACACAAATTGTTGTATTTAAAG	CGCATTGAAACGAAAACGGTATCGGCTTTAACGC
CTCAAACCGACACAAATTGTTGTATTTAAAG	ACAACAACAAGTGCAAAATGGAGAAAGATTCTAA
CTCAAACCGACACAAATTGTTGTATTTAAAG	AAATATTCCATAAATGCCCGTGCTTTCGATCTTT
CTCAAACCGACACAAATTGTTGTATTTAAAG	TTTGTTTATCAATTCAGCTAATTATGAAGCGTTAG
CTCAAACCGACACAAATTGTTGTATTTAAAG	AGTACCACATGACAAAAGATTTAAACCTATCTATCTC
CTCAAACCGACACAAATTGTTGTATTTAAAG	CACATGAAAAACTACGAACTTTTACAATACTATC
CTCAAACCGACACAAATTGTTGTATTTAAAG	AATTTAAAGCATAATGAAAACGTGAAAATCTATCA
CTCAAACCGACACAAATTGTTGTATTTAAAG

>NZ_AP014724|7|3|2125601-2126560|CRT
CTCAAACCGACACAAATTGTTGTATTTAAAG	AATGTATGCAGGGATTCAAGATCATGGCGGCGTTGC
CTCAAACCGACACAAATTGTTGTATTTAAAG	CTAACGGGGATGTATTTCAACTTACTACATCGACGA
CTCAAACCGACACAAATTGTTGTATTTAAAG	ACGTGTTCATTGCAGAGTGTGAACAAGAGTACAACA
CTCAAACCGACACAAATTGTTGTATTTAAAG	AGTAAAGAGTTATTGAGTGAAGTATTTGCAGTAAAT
CTCAAACCGACACAAATTGTTGTATTTAAAG	ATGGAAGAGGTTAGTTCCCCTTTTGGATATAAATTT
CTCAAACCGACACAAATTGTTGTATTTAAAG	TTAAATCAAAAAGCGATAAATCAATCAAAGAAGAGA
CTCAAACCGACACAAATTGTTGTATTTAAAG	GCGTAAACGGTTTTTTTTGTAACTCCGCCGATGACT
CTCTAACCGACACAAATTGTTGTATTTAAAG	CGCATTGAAACGAAAACGGTATCGGCTTTAACGC
CTCAAACCGACACAAATTGTTGTATTTAAAG	ACAACAACAAGTGCAAAATGGAGAAAGATTCTAA
CTCAAACCGACACAAATTGTTGTATTTAAAG	AAATATTCCATAAATGCCCGTGCTTTCGATCTTT
CTCAAACCGACACAAATTGTTGTATTTAAAG	TTTGTTTATCAATTCAGCTAATTATGAAGCGTTAG
CTCAAACCGACACAAATTGTTGTATTTAAAG	AGTACCACATGACAAAAGATTTAAACCTATCTATCTC
CTCAAACCGACACAAATTGTTGTATTTAAAG	CACATGAAAAACTACGAACTTTTACAATACTATC
CTCAAACCGACACAAATTGTTGTATTTAAAG	AATTTAAAGCATAATGAAAACGTGAAAATCTATCA
CTCAAACCGACACAAATTGTTGTATTTAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014724.1\|WP_144441009.1\|2110887_2111523_+\|DUF45-domain-containing-protein	unknown	unknown	gnl\|CDD\|307807
NZ_AP014724.1\|WP_060826495.1\|2127281_2128208_+\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_AP014724.1\|WP_060826486.1\|2112260_2112800_-\|manganese-efflux-pump	unknown	unknown	gnl\|CDD\|308338
NZ_AP014724.1\|WP_060826503.1\|2132345_2134412_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_AP014724.1\|WP_060826487.1\|2112796_2115454_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_AP014724.1\|WP_060826502.1\|2131990_2132344_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014724.1\|WP_060826494.1\|2126696_2127179_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|200361
NZ_AP014724.1\|WP_060826496.1\|2128204_2128504_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014724.1\|WP_060826491.1\|2119334_2122157_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_AP014724.1\|WP_060826501.1\|2131067_2131994_+\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_AP014724.1\|WP_060826490.1\|2117853_2119188_-\|cation:dicarboxylase-symporter-family-transporter	unknown	unknown	gnl\|CDD\|234968
NZ_AP014724.1\|WP_060826485.1\|2111611_2112226_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|379226
NZ_AP014724.1\|WP_060826488.1\|2115478_2116288_-\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|370050
NZ_AP014724.1\|WP_060826493.1\|2123469_2125338_+\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NZ_AP014724.1\|WP_060826497.1\|2128488_2128914_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239331
NZ_AP014724.1\|WP_060826500.1\|2130191_2131061_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014724.1\|WP_060826489.1\|2116378_2117698_-\|cation:dicarboxylase-symporter-family-transporter	unknown	unknown	gnl\|CDD\|234968
NZ_AP014724.1\|WP_060826499.1\|2129883_2130195_+\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|181423
NZ_AP014724.1\|WP_060826498.1\|2129020_2129785_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197319
NZ_AP014724.1\|WP_060826492.1\|2122153_2122903_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667

Protein	Function_ID	Function_description	E-value
NZ_AP014724.1\|WP_144441009.1\|2110887_2111523_+\|DUF45-domain-containing-protein	gnl\|CDD\|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	5.27892e-43
NZ_AP014724.1\|WP_060826495.1\|2127281_2128208_+\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	5.95406e-23
NZ_AP014724.1\|WP_060826486.1\|2112260_2112800_-\|manganese-efflux-pump	gnl\|CDD\|308338	pfam02659, Mntp, Putative manganese efflux pump. MntP is a family of bacterial proteins with a signal peptide and four transmembrane domains. It is a putative manganese efflux pump, since deletion of the gene leads to profound manganese sensitivity and elevated intracellular manganese levels in bacteria. Manganese is a highly important trace nutrient for organisms from bacteria to humans, and acts as an important element in the defense against oxidative stress and as an enzyme cofactor.	1.88136e-46
NZ_AP014724.1\|WP_060826503.1\|2132345_2134412_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.27932e-53
NZ_AP014724.1\|WP_060826487.1\|2112796_2115454_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_AP014724.1\|WP_060826494.1\|2126696_2127179_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|200361	TIGR04110, hypothetical_protein_VSWAT3_12502, heme utilization protein HutZ. Members of this family are heme utilization proteins, typically designated HutZ. They are members of the PPOX family (pfam01243) and, except for the lack of an N-terminal extension, are closely related to one form of heme oxidase (1.14.99.3), HugZ (TIGR04109). Members typically are found in a three-gene operon with radical SAM enzyme HutW and a protein of unknown function, HutX.	7.51667e-38
NZ_AP014724.1\|WP_060826491.1\|2119334_2122157_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_AP014724.1\|WP_060826501.1\|2131067_2131994_+\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	7.97542e-19
NZ_AP014724.1\|WP_060826490.1\|2117853_2119188_-\|cation:dicarboxylase-symporter-family-transporter	gnl\|CDD\|234968	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.	1.91302e-152
NZ_AP014724.1\|WP_060826485.1\|2111611_2112226_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|379226	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	0.00359831
NZ_AP014724.1\|WP_060826488.1\|2115478_2116288_-\|HDOD-domain-containing-protein	gnl\|CDD\|370050	pfam08668, HDOD, HDOD domain.	1.94531e-35
NZ_AP014724.1\|WP_060826493.1\|2123469_2125338_+\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NZ_AP014724.1\|WP_060826497.1\|2128488_2128914_-\|hypothetical-protein	gnl\|CDD\|239331	cd03033, ArsC_15kD, Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.	2.91148e-46
NZ_AP014724.1\|WP_060826489.1\|2116378_2117698_-\|cation:dicarboxylase-symporter-family-transporter	gnl\|CDD\|234968	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.	2.79029e-157
NZ_AP014724.1\|WP_060826499.1\|2129883_2130195_+\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|181423	PRK08433, PRK08433, flagellar motor switch protein FliN.	3.19716e-53
NZ_AP014724.1\|WP_060826498.1\|2129020_2129785_+\|exodeoxyribonuclease-III	gnl\|CDD\|197319	cd09085, Mth212-like_AP-endo, Methanothermobacter thermautotrophicus Mth212-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes the thermophilic archaeon Methanothermobacter thermautotrophicus Mth212and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Mth212 is an AP endonuclease, and a DNA uridine endonuclease (U-endo) that nicks double-stranded DNA at the 5'-side of a 2'-d-uridine residue. After incision at the 5'-side of a 2'-d-uridine residue by Mth212, DNA polymerase B takes over the 3'-OH terminus and carries out repair synthesis, generating a 5'-flap structure that is resolved by a 5'-flap endonuclease. Finally, DNA ligase seals the resulting nick. This U-endo activity shares the same catalytic center as its AP-endo activity, and is absent from other AP endonuclease homologues.	8.94157e-139
NZ_AP014724.1\|WP_060826492.1\|2122153_2122903_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.45337e-26

>NZ_AP014724.1|WP_060826493.1|2123469_2125338_+|phosphomethylpyrimidine-synthase-ThiC
MSKVLDNLEKIDSSYIQNFPSSRKIYIQGSRPDIQVPMREITLSATAFGDGKVEENPPLHVYDTSGVYTDPNVKIDLHKGLEPLRAKWIEERADTEQLADFSSVYFHKRHDDAELNALRFPNLKKPRRAMSGKNITQMHYAKAGIITPEMEYVAIRENCNLEVARQNKLLGAQHTGEHFGANLPEVYTPEFVRQEIAAGRAVLPLNVNHPEAEPMIIGRNFMVKINANIGNSATTSSIEEEVEKMLWSTRWGGDTVMDLSTGKNIHETREWILRNSAVPIGTVPIYQALEKVNGIAEDLTWEVFRDTLIEQAEQGVDYFTIHAGVRLAYVPMTAKRLTGIVSRGGSIMAKWCLHHHKENFLYTHFEEICDIMKAYDVAFSLGDGLRPGSLYDANDEAQFAELETLGELTKIAWKHDVQVMIEGPGHVPMQKIKENMTKELEDCFEAPFYTLGPLVTDVAPGYDHITSAIGAAQIGWYGTAMLCYVTPKEHLGLPNREDVKEGIIAYKIAAHAADLAKGFPGAQIRDNAMSKARFEFRWYDQFNIGFDPDRAREYHDKTLPVESAKVAHFCSMCGPKFCSMKISQDVRDYAAKIGAEDVNIALEKGLEEQAEHFKESGGQIYM
>NZ_AP014724.1|WP_060826492.1|2122153_2122903_-|sulfite-exporter-TauE/SafE-family-protein
MEIGFGLLGVFVGFASGFFGIGGGTLLVPIFLYMGYDIKTAIGISVMQMIFSSMLGSYQNYKAGMLTLKSGLILGCGALVGASFSGLIVDTLSHTALLFLFEAVLALSMYKMFTTALESSKPPCESYLLLAFLGVVLGAVSISTGTSGAIFLTPVLTGFLHWDIKKAVATTLFFVIFGSISGFFSLAMHGYVDYEVGALVSVGSIVGVYFGVMLSHKMAKKEQKLALLILYTVMFLLTLNKILSEMNVL
>NZ_AP014724.1|WP_060826491.1|2119334_2122157_-|excinuclease-ABC-subunit-UvrA
MIKIYGAKENNLKNINLEIPKNKLVVFTGLSGSGKSTLAFDTLYAEGQRRYIESLSSYARQFLDRVGKPDVEKIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLYARVGKQHCHICGQEISQMSVADIIEQVLKLPAETKLSILAPLVREKKGSFADMIESLRHKGYVRALIDGVMVRLDEEIELLKTKKHTIKVIIDRVVIREENRDRIATDIEKALLESYGEVELDIANAEEVGLATSHIHYSEHLACFDCKISFEPLEPLSFSFNSPKGACPTCDGLGIRYTLDLKKIINENVSIDEGAIRIFYGFNKSFYAKFLEAYCQAAGINTRIPYEELEEHQKRAILHGGVEEATFFWKKHKLVRKWEGVIKIAYEMLKDEKELGEYMSEKVCDTCGGHRLRKESLAVRVAGKRISDILELPIDQCLEFFKNNENFSYMSAQQTMIAAPILKEIKERLFFLFDVGLGYISLGRDARTISGGEAQRIRIASQIGSGLTGVMYVLDEPSIGLHERDTLKLIRTLRNLQKKGNSVIVVEHDKETIKTADFVVDIGPGAGKFGGEIVFAGTNEALLTSNSLTAQYINGTKTIDYRQNRAQERWIELNHVSINNIHDLDVKIPLGNLVAITGVSGSGKSSLILQTLLPVAKEYLNRAKKINKVAGVECIGLDQLDKVIYLDQSPIGRTPRSNPATYTGVMDEIRALFAKTKEAQIRGYSVGRFSFNVKGGRCEKCQGDGEIKIEMHFLPDIMVKCDSCKGQRYNAQTLEIKYKGKSIADVLDMSVDEAHDFFKAIPKINQKIQTLVDVGLGYITLGQNAVTLSGGEAQRIKLAKELSKKDTGNTLYVLDEPTTGLHFADVDRLVKVLHHLTDMGNSVLVIEHNMDVIKNADYLIDMGPEGGSYGGRIIAMGTPFEVANNAEKSGSYTGKFLGMEMGLSNENV
>NZ_AP014724.1|WP_060826490.1|2117853_2119188_-|cation:dicarboxylase-symporter-family-transporter
MASSIGSLEETKKKDWKSYTVKSLAFWVIVAIIAGIIFGTVDPKLAVQAKPGIDWFIQALKWLVGPIIFLTIISGIIGLESLKEVGSIGLKAFIYFEIVSTFALAIGVLFGNFFGPGHGMNFDVNSLDAKSVDKYTHSTQDVGSFWSILKNAIPSDPLTPFLNGNTLQVLVMALVLAILISAFGGKYKPAILKPLEVAQGFFFKILTILMWLSPVASFSAMAFLIGKFGLASLIGMASLLGVMLISVLAFIFGILGIILWFFKINVFKFMRFIAKEVLIVFATSSSESALAPLMKRLEAAGVSRGTTGLVIPTGYSFNLDCTNIYLSLSIIFLSQAFGIPLTLGEELSIILILMVTSKGAVGVTGSGFIVLAGTLSAMGGAIPVVTVAALLGVDKFMSEMRAVGNLCGNAVAAVVVGAWDKQIDMEKFRYALDHPESVEDAIPG
>NZ_AP014724.1|WP_060826489.1|2116378_2117698_-|cation:dicarboxylase-symporter-family-transporter
MLEKTSFKDWKRYTIKSLAFWVVVGIVAGITLGMLNPSLAVQAKPGIDWFIQVLKWLVGPIIFLTIISGIVGLESLKEVGSIGLKAFIYFEVVSTFALAIGILFGNLLKPGHGMHLNVESLDVSAVSSFTANASSQTGSVWGILKSAIPTDPITPFLHGNTLQVLVMALVIAIGIAAFGEKYKEAILAPLEKVQNVFFKILTILMWLSPIASFSAMAFLIGKFGIASLIGMASLLGVMLISVLAFLFGVLGIILWFYKINVFKFMRFIAKEVLIVFATSSSESALAPLMRRLEAAGVSRGTTGLVIPTGYSFNLDCTNIYLSLSIIFLAQAFGIPLTLSHELSIIFILMVASKGAVGVTGSGFIVLAGTLSAMGDVIPVATVAVLLGVDKFMSEMRAVGNLCGNAVAAVVVGAWDKQIDMEKFRYSLDHPESVEDAIPG
>NZ_AP014724.1|WP_060826488.1|2115478_2116288_-|HDOD-domain-containing-protein
MLKEIAERIRALPPLPKTFTQINALFRDEQASIADLAKLIEEDPMLIANLLKVANSPLYGFRREIKSVLQAVGLFGMSTTRSLVLDMSIKKLLNVDLVPYAISPEEFAQLSHMQSMLLSKWYKNVDATSVDFLFLCALLQESGKILIADEIAKNDETYAFRSELENALNVADVEKMFVGVTSSEVSALIFEHWKFDKRMIEAIRFTERTQDAPAAIRAQSIALKIVKTAVAINAPLSERNINLALMLLNKEGLDSAPFLEAVESIKTSF
>NZ_AP014724.1|WP_060826487.1|2112796_2115454_-|DNA-polymerase-I
MKTLTIIDTFGFFFRNYYALPALRNSQGFPTGLLTGFAHFIAALKKEHDTDYVLFALDSKGKNFRHDIDPNYKANRPEAPEDFKKQLPVAISWIEKMGFKSYGEEGFEADDIIASAVKFAKHHNIKVRIVTHDKDLYQLIDDGRVVIYDPMKKSEITTEKCFEKFGVYPHQIGEYLSLVGDTADNIPGVKGIGPKGAKKLLDDFKTMEGVYANLDKVANPRIKTMLEEGKQSAYLSRRLVCLDDTLSIADKFESFHYPDAQPLSYIVEELEKYELRQILARVRAESLHVSVQTPPTQGFKPILLDDAKLLLRVVEGIEEDEIVAFDTETDALDAYNANIVGFSFCVNTQEAYYVPIAHHYLGVGNQISHEEAKEALTHLLSRKIVGQNLKFDLAVIEHNFGLQNVNLYADTMILAWLLNPESNVGLDTLSKRFFNHEMIKFKDVVAKGENFSGVSLEKACEYASEDAWMTLKLFEKLKEMLDPSLLDLAKNVEFPFIRTLMHMEREGIQVDAAYFETLLKRTDHAIEALKVEIFALCNATFNLNSTQQLGAVLFEQLGLPPLKKTKTGYSTDENVLNELFDKHPSIAKILEYRELYKLRSTYIEPLLKLSKASSRSRVHTSFMQTGTSTGRLSSKDPNLQNIPVKTALGREVRGGFVAKEGYVLVGIDYSQIELRLLAHFSGDEAMVRAFQEGKDIHKETALKLFGEAEADAKRGIAKSINFGLLYGMGPKRLSETIGITTKEAKSYIDGYFATFPTIKQYLSSIEEQAKKEGFVQTLLGRKRFFDFEHANAMQYAGYLREAVNTVFQGSAADLIKLAMNRIMATLVNDEAKLLLQIHDELIFEVNEARAETFAKEARHVMEEVYALRVPLNVSIAIGANWGVLK
>NZ_AP014724.1|WP_060826486.1|2112260_2112800_-|manganese-efflux-pump
MTEVIALALALSMDAFAVSIGLGTKQATGHGALAFKAGLFFGIFQALMPLIGYIGGKGLLGFIDHYTRYVAFALLVLIGAKMVYESMQESLEEEIQKITNKLMLTLAIATSIDAMAAGFSLMLLDMNPFLACGLIGLVTFGMSFLGVFVGKLTGNWLESKAELLGGVVLVAIGIRIVIA
>NZ_AP014724.1|WP_060826485.1|2111611_2112226_+|outer-membrane-beta-barrel-protein
MKKSLVAASLLLAASAVLADSNAWFVGGEFGGMSIHGKTSASASSSFSGYSFLEGSSSESIDATYEALKVGKYFEYGRVYGNFAYQNKKEDISSFTYGLAYDYLFRNASAITPFLGLTASYSTSKSDDDRAQLLSIDKPKGFNYGAEAGFIYALGAHTELEIGARYLVSDVDDTFNYDDGTTNIHVKSENEHFIQYYLGLNYKF
>NZ_AP014724.1|WP_144441009.1|2110887_2111523_+|DUF45-domain-containing-protein
MTKSKVGLTKTIEYEGHVLSYSLFVNRRLKHLYITIDPIKGVIVKSPFSAIDTIETLLLQKASWILSKLHAAQERMHIGRLLETEGKILYLGEAILLSSFQTPELFYKEKTPPLVNRLVEEWSFLMGVKPTKVSFRQAKKRWGSCSYRNELSFNLSLSQLPLECIAYIVVHELAHITHKHHQKAFWECVASFMPEYKNHEITLKKFSPSLI
>NZ_AP014724.1|WP_060826494.1|2126696_2127179_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MKHFIAGIQTAIIGTLDAKGAPFSSYAPYMYDQNRFYVYLSDIATHAKNLQRNPKASLFFIEDESKTENLFARKRVSLQCDSVKITRGSERFEEVLDLFAKKFDAKMVNTLKKMTDFNLYEFKVTYGEATFGFGKAYFIGGKNMDELIPRGENNPHREGK
>NZ_AP014724.1|WP_060826495.1|2127281_2128208_+|AEC-family-transporter
MNIVLSVSAIYVFIVLGYVAKKIFKDELSERGMVILSVYFLHPMFSFWGLSTKPISLDLLKIPAYYLVFSFLTIALGFFIARLFFNDKKERSIMTIAAALNNTGNLGIPLGIALLGEESILYTSMISVANTLMTYTLGVFFYSAGSSSLRQAFVNIFKLPIIWAAMLALALNFSGIRIHPVLFQSLEMGAYSMIVIQLMIFGMYLYNVKLKELNVKRLWHVHLLKFVLMPVLTVWLLFFVLPITPFVASVLFLELIVPLAVVNVNLAALYDCRALDVASLIFFTSLWFIPFLMLAAFILSAFSLGSFA
>NZ_AP014724.1|WP_060826496.1|2128204_2128504_-|hypothetical-protein
MQQCLEYICREFEKVKDYLHRPTLEKERIIDNLFANFMQCFSEYPFEKKRYPKEFLEAANLYNAGDAVVRQRFADIGMRYLLLSDFYDYVKITHLDRKV
>NZ_AP014724.1|WP_060826497.1|2128488_2128914_-|hypothetical-protein
MVFTPHRRIVFYEKTGCSGNARQKALLREYGIEIEVRSLLETPWDKPTLEAFFEGLTPHEMLNPFAPQLKDGTFQLAEYTKESLIEAMIRTPILIRRPLLQIGDVKLCGFDIARLNELLHVTMPVPENINACLSSDACNNA
>NZ_AP014724.1|WP_060826498.1|2129020_2129785_+|exodeoxyribonuclease-III
MKLISWNVNGIRAVASKNAFSWVDTYQPDILCLQEIKAEYEQIPTDLFTHPLTHRYVNSAKKKGYSGTMSLSRIPFSDTSTDLQIDHTEEGRILEHRFGDTVLFNVYFPNGQQSEERLAHKMRFYADFLEHMQTLRKQGKSIIVCGDVNTAHREIDLAHPKANENTSGFLPVERAWIDTLLHVGYVDTFRHVHGDQKDAYSWWSYRAGARSRNVGWRIDYFFISEELAPRLNDAFILPEIQGSDHCPVGIDIEL
>NZ_AP014724.1|WP_060826499.1|2129883_2130195_+|flagellar-motor-switch-protein-FliN
MDAADQEYVARKLLSGFENLLDISVNFVAELGTTHITIQRLLKLEKGSVIDLEKPAGESVELYINGKIFGKGEVMVYEKNLAIRINEILDSKTVIQYFKKESL
>NZ_AP014724.1|WP_060826500.1|2130191_2131061_+|hypothetical-protein
MRLLYVLFALSSWLCASNLLTYNVYERSDRVDVMLSFDAPHEGSISQKNDASSITLTINDLGYDKMIEKSINSAIIQELVIIPEKNNALKVVLKSDKRISVVASKTVDGFGLRIRGSIMQAKTSDTEAAAPSLSPSSSSPTSDLIDTRYIVVIIVLVLLIALMFWIKRRIGVRTIRPAKSGGAGKSWLFNPKTGVGQEVNLLHKKQLDTQNSVVLFEYGSIRYLVMTGNTNVLLEKFQNGEVKDDNDFEKVFEENRRRLDDYLKLQDNKLSTYKNKASADYPPFEEAEH
>NZ_AP014724.1|WP_060826501.1|2131067_2131994_+|AEC-family-transporter
MTIAISILSIYAFILLGFMSKKVLKEEMNEKGMVLLSIYFLQPMLSFWGLSSRPIDLSLLQVPFWYVAISLFCVLVSFVIARLFFTDIKEKSIVTICVIIGNTGNLGIPLGIALFGDASIIYTSMINISNVFIVYTLGVFFYSRGNFSIKESLFNIVKLPVIWFAFLALILNFSGVRFHPALMRSMEMGAYCTMVIQLIVFGMYLYNIHLKSMNVTLVLHVGMIKFLLTPLIAGVILFYALDLEPMVATLIFLELIVPLAVTNVNLAALYECKPLDVTMLVFVTSLVFIPFFILVSQLLHFLNIVNLP
>NZ_AP014724.1|WP_060826502.1|2131990_2132344_+|hypothetical-protein
MNDKEARVKYIRALERFLSSCVSALKNEQFDYDLFVKRAQKSLKTLHKVQAVRLDSTYTHTLEAYANLVVSTIETQDADKDTAHKRLLKEANLLEKEKYRGSYKKEKHKTRGFDDGY
>NZ_AP014724.1|WP_060826503.1|2132345_2134412_-|diguanylate-cyclase
MLQGLRARSILLSIVAFLILGSISLAFTYQLTRDLRLTFGEKYAIEHALRHSQRIADMLALNIRLAEHTTTSDALHRWLSNESDETAKEESLKLLNDSLRMAKADSWFVAFAGSEHFYYEDLNRSYQAFQPLKKLSSSNTNDGWFYHTMRSADTFNLNIDYDEAVKATKLWMNILVRTEQNALGVTGFGIDLAQFIDAYVLTKTQGFQAIILNKQGVILGHPDFSKVTHNVHTSASNTWKTIWPYLDTKSQKELRRYMQDLPSHASDVFTCKLRYDGKEYTVALAYMPYVDWIGLSMVDVSTLLTLYDMRMAFTVLIVLGCLSAWIAYVLSQSYLLTPIRHLSSVVKAVCAGDYTQRAPLDKETDELSALSRDVNAMIDMVQEAQSATIQRYRWLAENSHDVIWVMGVDGKFVYVSPSVKRLRGFSAEEVMEQSFEEVICEGSRQTVLHLMEMAILEAANGVLLDAKTVLVEQPCKDGSTVWTEVNARLVVNQQDGSMQFIGITRDITERLAAEEEIKKLAFYDPLTHLANRRLFVDKLESGLVTCKKEHTFAGVIFLDLDDFKPLNDTYGHQAGDELLIEVARRLRETVRATDTVGRFGGDEFVILVTQLGFTREEASHTVTRIAHQIAAFIAQPYPLSSTVYTLSASIGVLLFNEGQNDAKTILDEADSVMYRAKDAGKACVIVQG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_AP014724_4	4.1\|1315933\|33\|NZ_AP014724\|CRISPRCasFinder	1315933-1315965	33	NZ_AP014724.1	1247025-1247057	0	1.0
NZ_AP014724_1	1.1\|306286\|49\|NZ_AP014724\|CRISPRCasFinder	306286-306334	49	NZ_AP014724.1	664761-664809	2	0.959

1. spacer 4.1|1315933|33|NZ_AP014724|CRISPRCasFinder matches to position: 1247025-1247057, mismatch: 0, identity: 1.0

aaagagagtttaaacgttttgaacgtcgcataa	CRISPR spacer
aaagagagtttaaacgttttgaacgtcgcataa	Protospacer
*********************************

2. spacer 1.1|306286|49|NZ_AP014724|CRISPRCasFinder matches to position: 664761-664809, mismatch: 2, identity: 0.959

actccgtcttggagaactcagcgttagcgtagcgtttagagcttagctc	CRISPR spacer
actccgtcttggagaacccagcgttagcgtagcttttagagcttagctc	Protospacer
*****************.*************** ***************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP014724_7	7.9\|2126166\|34\|NZ_AP014724\|PILER-CR,CRISPRCasFinder,CRT	2126166-2126199	34	MF403008	Agrobacterium phage Atu_ph07, complete genome	133089-133122	7	0.794
NZ_AP014724_7	7.8\|2126101\|34\|NZ_AP014724\|PILER-CR,CRISPRCasFinder,CRT	2126101-2126134	34	NC_021742	Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence	19062-19095	8	0.765
NZ_AP014724_6	6.2\|1659962\|34\|NZ_AP014724\|PILER-CR,CRISPRCasFinder,CRT	1659962-1659995	34	NZ_CP016746	Lactococcus lactis subsp. cremoris strain JM1 plasmid pMPJM1, complete sequence	143791-143824	9	0.735
NZ_AP014724_6	6.4\|1660092\|34\|NZ_AP014724\|PILER-CR,CRISPRCasFinder,CRT	1660092-1660125	34	NZ_CP016699	Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence	59325-59358	9	0.735
NZ_AP014724_6	6.4\|1660092\|34\|NZ_AP014724\|PILER-CR,CRISPRCasFinder,CRT	1660092-1660125	34	KY744234	Sulfolobus islandicus rod-shaped virus 11, partial genome	21553-21586	9	0.735
NZ_AP014724_6	6.2\|1659962\|34\|NZ_AP014724\|PILER-CR,CRISPRCasFinder,CRT	1659962-1659995	34	NZ_CP040462	Enterococcus sp. M190262 plasmid pM190262, complete sequence	110044-110077	11	0.676

1. spacer 7.9|2126166|34|NZ_AP014724|PILER-CR,CRISPRCasFinder,CRT matches to MF403008 (Agrobacterium phage Atu_ph07, complete genome) position: , mismatch: 7, identity: 0.794

acaacaacaagtgcaaaatggagaaagattctaa	CRISPR spacer
ccaacaacaattgcacaatggagaaagcgcgtaa	Protospacer
 ********* **** ***********  . ***

2. spacer 7.8|2126101|34|NZ_AP014724|PILER-CR,CRISPRCasFinder,CRT matches to NC_021742 (Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

-cgcattgaaacgaaaacggtatcggctttaacgc	CRISPR spacer
ttctggtgaaa-gataacggtatcggctttaacgt	Protospacer
 . .. ***** ** *******************.

3. spacer 6.2|1659962|34|NZ_AP014724|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016746 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pMPJM1, complete sequence) position: , mismatch: 9, identity: 0.735

aaaacaattatagaagaggcaataagaaaaccga	CRISPR spacer
taaacaattaaagaagaggaaataaaatggcgaa	Protospacer
 ********* ******** *****.* ..* .*

4. spacer 6.4|1660092|34|NZ_AP014724|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016699 (Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence) position: , mismatch: 9, identity: 0.735

cccattaagttctatttcttctcttacttcatgg	CRISPR spacer
ttctcttagtgctatttcttctcttacatcaggc	Protospacer
..* .* *** **************** *** *

5. spacer 6.4|1660092|34|NZ_AP014724|PILER-CR,CRISPRCasFinder,CRT matches to KY744234 (Sulfolobus islandicus rod-shaped virus 11, partial genome) position: , mismatch: 9, identity: 0.735

cccattaagttctatttcttctcttacttcatgg	CRISPR spacer
tatatcatattctatttcttcttctacttcatgt	Protospacer
. .**.* .*************..*********

6. spacer 6.2|1659962|34|NZ_AP014724|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040462 (Enterococcus sp. M190262 plasmid pM190262, complete sequence) position: , mismatch: 11, identity: 0.676

aaaacaattatagaagaggcaataagaaaaccga	CRISPR spacer
gcgtatattatagaaaaggcaataagaaaaagtg	Protospacer
. .   *********.**************   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

530571 : 536993

Escherichia_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060825340.1\|530571_531576_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	1.1e-78	46.3
WP_060825341.1\|531572_532460_+	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	4.8e-105	63.4
WP_060825342.1\|532456_533032_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	5.4e-41	56.0
WP_060825343.1\|533024_533891_+	dTDP-4-dehydrorhamnose reductase	A0A1D8EQE2	Escherichia_phage	1.1e-42	41.2
WP_060825344.1\|533890_534907_+	dTDP-glucose 4,6-dehydratase	K7QJG5	Escherichia_phage	1.2e-78	46.7
WP_060825345.1\|534903_535713_+	ABC transporter permease	NA	NA	NA	NA
WP_060826916.1\|535712_536993_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.8e-12	23.5

DBSCAN-SWA_2

545675 : 553693

Micromonas_sp._RCC1109_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060826917.1\|545675_546773_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.5e-11	25.4
WP_060825351.1\|546769_548554_+	thiamine pyrophosphate-binding protein	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	4.5e-86	36.0
WP_060825352.1\|548557_549436_+	acetaldehyde dehydrogenase (acetylating)	E5EQ71	Micromonas_sp._RCC1109_virus	1.3e-54	42.8
WP_060825353.1\|549425_550433_+	4-hydroxy-2-oxovalerate aldolase	E5EQ69	Micromonas_sp._RCC1109_virus	6.5e-74	43.8
WP_060825354.1\|550434_551436_+	NAD-dependent epimerase/dehydratase family protein	M1GXM0	Acanthocystis_turfacea_Chlorella_virus	4.7e-16	25.1
WP_060825355.1\|551432_552356_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_060825356.1\|552355_553693_+	lipopolysaccharide biosynthesis protein RfbH	A0A218MN59	uncultured_virus	5.4e-68	35.3

DBSCAN-SWA_3

1276968 : 1367280

Burkholderia_phage(15.0%)

protease,terminase,plate,tail,tRNA,capsid,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060825872.1\|1276968_1278081_-\|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	A0A167RER2	Powai_lake_megavirus	2.4e-16	27.6
WP_039674538.1\|1278290_1279001_-	hypothetical protein	NA	NA	NA	NA
WP_060825873.1\|1279011_1280529_-	B12-binding domain-containing radical SAM protein	NA	NA	NA	NA
WP_060825874.1\|1280746_1282867_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_060825875.1\|1282866_1284213_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_060825876.1\|1284226_1292818_-	DUF4347 domain-containing protein	NA	NA	NA	NA
WP_060825877.1\|1292835_1293558_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_060825878.1\|1293572_1295465_-	TolC family protein	NA	NA	NA	NA
WP_060825879.1\|1295735_1296410_+	response regulator transcription factor	NA	NA	NA	NA
WP_060825880.1\|1296406_1297981_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_060825881.1\|1298021_1301045_-	tetrathionate reductase subunit TtrA	NA	NA	NA	NA
WP_060825882.1\|1301047_1302172_-	polysulfide reductase NrfD	NA	NA	NA	NA
WP_039674532.1\|1302173_1302962_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_060825883.1\|1303041_1304703_-	sensor histidine kinase	NA	NA	NA	NA
WP_039674530.1\|1304689_1305382_-	response regulator transcription factor	NA	NA	NA	NA
WP_039674527.1\|1305386_1305878_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_060825884.1\|1305936_1308495_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_173636972.1\|1308519_1310655_-	DNA translocase FtsK 4TM domain-containing protein	S5VNE3	Mycobacterium_phage	4.7e-82	45.1
WP_060825886.1\|1310806_1313440_-	hypothetical protein	NA	NA	NA	NA
WP_039674522.1\|1313606_1313888_+	HU family DNA-binding protein	A7KV42	Bacillus_phage	5.2e-13	50.6
WP_060825887.1\|1313952_1315437_-	inorganic phosphate transporter	NA	NA	NA	NA
WP_060825888.1\|1315927_1316629_-	hypothetical protein	NA	NA	NA	NA
WP_144440965.1\|1316849_1318035_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.0e-50	42.1
WP_060825890.1\|1319036_1320299_-	MFS transporter	NA	NA	NA	NA
WP_060825891.1\|1320295_1322431_-	bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase	NA	NA	NA	NA
WP_060825892.1\|1322433_1322742_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_060825893.1\|1322842_1324168_-	dual specificity protein phosphatase family protein	NA	NA	NA	NA
WP_060825894.1\|1324170_1325889_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_041961804.1\|1325911_1326550_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_144440985.1\|1326559_1327492_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_060826954.1\|1327488_1328085_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_060825895.1\|1328291_1329278_-	amidohydrolase family protein	NA	NA	NA	NA
WP_144440986.1\|1329387_1329828_-	hypothetical protein	NA	NA	NA	NA
WP_039674507.1\|1329943_1330537_+	hypothetical protein	NA	NA	NA	NA
WP_060825897.1\|1330549_1331056_-	META domain-containing protein	NA	NA	NA	NA
WP_039674505.1\|1331073_1332771_-	cation:proton antiporter	NA	NA	NA	NA
WP_041961808.1\|1332792_1333815_-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	4.0e-55	35.0
WP_060825898.1\|1334315_1335113_-	DNA adenine methylase	A7YGS0	Campylobacter_phage	9.7e-73	53.4
WP_144440987.1\|1335207_1335477_-	hypothetical protein	NA	NA	NA	NA
WP_060825900.1\|1335424_1335856_-	hypothetical protein	NA	NA	NA	NA
WP_144440988.1\|1335815_1336370_-	hypothetical protein	NA	NA	NA	NA
WP_060825902.1\|1336359_1336626_-	hypothetical protein	NA	NA	NA	NA
WP_060825903.1\|1336622_1336847_-	hypothetical protein	K4I1E3	Acidithiobacillus_phage	1.4e-05	40.0
WP_158509035.1\|1336855_1337746_-	hypothetical protein	NA	NA	NA	NA
WP_060825905.1\|1337802_1338006_-\|tail	tail protein X	NA	NA	NA	NA
WP_060825906.1\|1338002_1338386_-\|tail	phage tail protein	NA	NA	NA	NA
WP_060825907.1\|1338378_1340376_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	2.1e-44	33.0
WP_060825908.1\|1340505_1340742_-\|tail	phage tail assembly protein	Q75QK8	Wolbachia_phage	3.3e-05	45.1
WP_060825909.1\|1340751_1341258_-\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_060825910.1\|1341267_1342383_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A7YGH4	Campylobacter_phage	1.9e-42	37.2
WP_060825911.1\|1342433_1343006_-	hypothetical protein	NA	NA	NA	NA
WP_060825912.1\|1343017_1344058_-	hypothetical protein	A0A2H4PCZ7	Mycobacterium_phage	4.1e-15	44.2
WP_060825913.1\|1344057_1344627_-\|tail	phage tail protein	NA	NA	NA	NA
WP_060825914.1\|1344619_1345690_-\|plate	baseplate J/gp47 family protein	R4JDM0	Burkholderia_phage	1.1e-10	33.7
WP_060825915.1\|1345689_1345965_-	GPW/gp25 family protein	NA	NA	NA	NA
WP_060825916.1\|1345961_1346450_-\|plate	phage baseplate assembly protein V	A0A219YA41	Aeromonas_phage	1.2e-09	33.3
WP_060825917.1\|1346446_1346689_-	hypothetical protein	NA	NA	NA	NA
WP_060825918.1\|1346851_1347295_+	DUF1834 family protein	NA	NA	NA	NA
WP_060825919.1\|1347291_1348161_+	hypothetical protein	H7BWC3	unidentified_phage	5.5e-21	35.1
WP_060825920.1\|1348157_1348619_+	hypothetical protein	NA	NA	NA	NA
WP_060825921.1\|1348631_1349612_+\|capsid	major capsid protein	NA	NA	NA	NA
WP_060825922.1\|1349751_1350156_+	DUF1320 family protein	NA	NA	NA	NA
WP_060825923.1\|1350145_1350634_+	DUF1804 family protein	NA	NA	NA	NA
WP_082709161.1\|1350620_1352363_+\|terminase	phage terminase large subunit	B7SDZ1	Pseudomonas_virus	1.2e-86	38.2
WP_060825924.1\|1352359_1353763_+	DUF935 family protein	Q5ZQY4	Pseudomonas_phage	2.1e-17	23.2
WP_082709222.1\|1353855_1354917_+	hypothetical protein	Q6QIB9	Burkholderia_phage	4.2e-31	42.3
WP_060825926.1\|1355006_1355483_+	phage virion morphogenesis protein	NA	NA	NA	NA
WP_060825927.1\|1355479_1355740_-	hypothetical protein	NA	NA	NA	NA
WP_158509036.1\|1355815_1356100_-	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_144440965.1\|1356129_1357316_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.0e-50	42.1
WP_060825928.1\|1357801_1358761_-	hypothetical protein	NA	NA	NA	NA
WP_173636955.1\|1359041_1359212_+	hypothetical protein	NA	NA	NA	NA
WP_144440989.1\|1359214_1359940_+	arginyltransferase	NA	NA	NA	NA
WP_060825929.1\|1359996_1360827_+	adenylosuccinate lyase	NA	NA	NA	NA
WP_060825930.1\|1360823_1362095_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_041961811.1\|1362110_1362833_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.9e-25	29.9
WP_060825931.1\|1362819_1363245_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_060825932.1\|1363241_1364225_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	2.1e-45	32.5
WP_039674492.1\|1364221_1364470_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_060825933.1\|1364623_1365850_+	argininosuccinate synthase	NA	NA	NA	NA
WP_039674489.1\|1365887_1366286_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_039674488.1\|1366282_1366729_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_039674486.1\|1366734_1367280_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA

DBSCAN-SWA_4

1630064 : 1670289

Burkholderia_phage(17.65%)

head,terminase,integrase,plate,tail,tRNA,capsid,transposase

attL 1629966:1629979|attR 1634354:1634367

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1629966:1629979	attL	NA	NA	NA	NA
WP_060826155.1\|1630064_1632215_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A219VHD4	Ochrobactrum_phage	7.3e-06	22.4
WP_060826156.1\|1632281_1632992_+	ATP-binding protein	NA	NA	NA	NA
WP_060826157.1\|1633038_1633299_+	hypothetical protein	NA	NA	NA	NA
WP_060826159.1\|1633611_1633866_+	hypothetical protein	NA	NA	NA	NA
WP_060826160.1\|1633868_1634507_+	DUF3164 family protein	A0A2H4IYN0	uncultured_Caudovirales_phage	2.3e-24	34.8
1634354:1634367	attR	NA	NA	NA	NA
WP_060826161.1\|1634593_1634821_+	transcriptional regulator	M5A9C2	Nitratiruptor_phage	1.3e-09	49.3
WP_060826162.1\|1634916_1635129_+	hypothetical protein	NA	NA	NA	NA
WP_060826163.1\|1635139_1635406_+	hypothetical protein	NA	NA	NA	NA
WP_060826164.1\|1635402_1636329_+	AAA family ATPase	NA	NA	NA	NA
WP_060826165.1\|1636575_1636980_+	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_060825927.1\|1637055_1637316_+	hypothetical protein	NA	NA	NA	NA
WP_060825926.1\|1637312_1637789_-	phage virion morphogenesis protein	NA	NA	NA	NA
WP_082709222.1\|1637878_1638940_-	hypothetical protein	Q6QIB9	Burkholderia_phage	4.2e-31	42.3
WP_060826166.1\|1639032_1640436_-	DUF935 family protein	Q5ZQY4	Pseudomonas_phage	2.1e-17	23.2
WP_082709170.1\|1640432_1642175_-\|terminase	phage terminase large subunit	A0A076FR23	Pseudomonas_phage	1.9e-81	38.1
WP_060826167.1\|1642161_1642425_-	DUF1804 family protein	NA	NA	NA	NA
WP_144440965.1\|1642494_1643681_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.0e-50	42.1
WP_060826168.1\|1643732_1643948_-	DUF1804 family protein	NA	NA	NA	NA
WP_060826169.1\|1643937_1644342_-	DUF1320 family protein	NA	NA	NA	NA
WP_060826170.1\|1644481_1645468_-\|capsid	major capsid protein	NA	NA	NA	NA
WP_060826171.1\|1645480_1645846_-\|head	head decoration protein	NA	NA	NA	NA
WP_060826172.1\|1645857_1646712_-	hypothetical protein	H7BWC3	unidentified_phage	7.1e-21	35.1
WP_060826173.1\|1646708_1647152_-	DUF1834 family protein	NA	NA	NA	NA
WP_060826174.1\|1647316_1647559_+	hypothetical protein	NA	NA	NA	NA
WP_060826175.1\|1647555_1648044_+\|plate	phage baseplate assembly protein V	A0A219YA41	Aeromonas_phage	2.7e-09	31.2
WP_060825915.1\|1648040_1648316_+	GPW/gp25 family protein	NA	NA	NA	NA
WP_060825914.1\|1648315_1649386_+\|plate	baseplate J/gp47 family protein	R4JDM0	Burkholderia_phage	1.1e-10	33.7
WP_060825913.1\|1649378_1649948_+\|tail	phage tail protein	NA	NA	NA	NA
WP_060825912.1\|1649947_1650988_+	hypothetical protein	A0A2H4PCZ7	Mycobacterium_phage	4.1e-15	44.2
WP_060825911.1\|1650999_1651572_+	hypothetical protein	NA	NA	NA	NA
WP_060825910.1\|1651622_1652738_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A7YGH4	Campylobacter_phage	1.9e-42	37.2
WP_060825909.1\|1652747_1653254_+\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_060825908.1\|1653263_1653500_+\|tail	phage tail assembly protein	Q75QK8	Wolbachia_phage	3.3e-05	45.1
WP_060825907.1\|1653629_1655627_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	2.1e-44	33.0
WP_060825906.1\|1655619_1656003_+\|tail	phage tail protein	NA	NA	NA	NA
WP_060825905.1\|1655999_1656203_+\|tail	tail protein X	NA	NA	NA	NA
WP_158509035.1\|1656259_1657150_+	hypothetical protein	NA	NA	NA	NA
WP_060825903.1\|1657158_1657383_+	hypothetical protein	K4I1E3	Acidithiobacillus_phage	1.4e-05	40.0
WP_060825902.1\|1657379_1657646_+	hypothetical protein	NA	NA	NA	NA
WP_144440988.1\|1657635_1658190_+	hypothetical protein	NA	NA	NA	NA
WP_060825900.1\|1658149_1658581_+	hypothetical protein	NA	NA	NA	NA
WP_144440987.1\|1658528_1658798_+	hypothetical protein	NA	NA	NA	NA
WP_060825898.1\|1658892_1659690_+	DNA adenine methylase	A7YGS0	Campylobacter_phage	9.7e-73	53.4
WP_060826176.1\|1660773_1661085_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_060826177.1\|1661081_1662086_-	type I-B CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_060826178.1\|1662109_1662922_-	antirepressor	NA	NA	NA	NA
WP_060826179.1\|1662931_1663426_-	CRISPR-associated protein Cas4	NA	NA	NA	NA
WP_060826180.1\|1663422_1665627_-	CRISPR-associated helicase/endonuclease Cas3	A0A2R2ZGW0	Clostridioides_phage	4.4e-22	26.3
WP_060826181.1\|1665626_1666340_-	CRISPR-associated protein Cas5	NA	NA	NA	NA
WP_060826182.1\|1666341_1667262_-	type I-B CRISPR-associated protein Cas7/Cst2/DevR	NA	NA	NA	NA
WP_060826183.1\|1667274_1668978_-	hypothetical protein	NA	NA	NA	NA
WP_060826184.1\|1668974_1669691_-	CRISPR-associated endoribonuclease Cas6	NA	NA	NA	NA
WP_060826963.1\|1669809_1670289_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP014724

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection