Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_AP014801 Rhodovulum sulfidophilum plasmid Plasmid1 DNA, complete genome, strain: DSM 2351 0 crisprs NA 0 0 0 0
NZ_AP014800 Rhodovulum sulfidophilum DNA, complete genome, strain: DSM 2351 4 crisprs csa3,DEDDh,cas1,cas2,cas6,cas10,csm3gr7 0 5 15 0
NZ_AP014802 Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351 0 crisprs NA 0 0 1 0
NZ_AP014803 Rhodovulum sulfidophilum plasmid Plasmid3 DNA, complete genome, strain: DSM 2351 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_AP014800
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP014800_1 544548-544655 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP014800_2 4264032-4264283 TypeIII NA
3 spacers
cas1,cas2,cas6,cas10,csm3gr7

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP014800_3 4266496-4266750 TypeIII NA
3 spacers
cas1,cas2,cas6,cas10,csm3gr7

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP014800_4 4275534-4275931 TypeIII NA
5 spacers
csm3gr7,cas10,cas6,cas2,cas1

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_AP014800_3 3.2|4266603|33|NZ_AP014800|CRISPRCasFinder,CRT,PILER-CR 4266603-4266635 33 NC_048792 Serratia phage Moabite, complete genome 226211-226243 7 0.788
NZ_AP014800_3 3.2|4266603|33|NZ_AP014800|CRISPRCasFinder,CRT,PILER-CR 4266603-4266635 33 MF285618 Serratia phage 2050HW, complete genome 160119-160151 8 0.758
NZ_AP014800_2 2.1|4264069|33|NZ_AP014800|CRISPRCasFinder,CRT 4264069-4264101 33 NZ_CP019309 Phaeobacter inhibens strain DOK1-1 plasmid pDOK1-1-2, complete sequence 144671-144703 9 0.727
NZ_AP014800_4 4.2|4275644|34|NZ_AP014800|CRISPRCasFinder,CRT,PILER-CR 4275644-4275677 34 NZ_CP032685 Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence 1415482-1415515 9 0.735
NZ_AP014800_4 4.2|4275644|34|NZ_AP014800|CRISPRCasFinder,CRT,PILER-CR 4275644-4275677 34 NZ_CP032690 Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence 1415460-1415493 9 0.735
NZ_AP014800_4 4.3|4275715|34|NZ_AP014800|CRISPRCasFinder,CRT,PILER-CR 4275715-4275748 34 NZ_CP054621 Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence 909750-909783 9 0.735
NZ_AP014800_4 4.3|4275715|34|NZ_AP014800|CRISPRCasFinder,CRT,PILER-CR 4275715-4275748 34 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 346701-346734 10 0.706
NZ_AP014800_3 3.2|4266603|33|NZ_AP014800|CRISPRCasFinder,CRT,PILER-CR 4266603-4266635 33 NZ_CP044333 Methylocystis parvus strain BRCS2 plasmid unnamed2, complete sequence 133953-133985 11 0.667
NZ_AP014800_4 4.4|4275786|35|NZ_AP014800|CRISPRCasFinder,CRT,PILER-CR 4275786-4275820 35 NZ_CP021449 Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence 2018549-2018583 11 0.686
NZ_AP014800_4 4.4|4275786|35|NZ_AP014800|CRISPRCasFinder,CRT,PILER-CR 4275786-4275820 35 NZ_CP015116 Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence 63477-63511 11 0.686
NZ_AP014800_4 4.4|4275786|35|NZ_AP014800|CRISPRCasFinder,CRT,PILER-CR 4275786-4275820 35 NZ_CP009763 Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence 1839679-1839713 11 0.686

1. spacer 3.2|4266603|33|NZ_AP014800|CRISPRCasFinder,CRT,PILER-CR matches to NC_048792 (Serratia phage Moabite, complete genome) position: , mismatch: 7, identity: 0.788

caagatcca---gcaggctctgctgatctggcagaa	CRISPR spacer
---tacccagacgcaggctctgctaagctggcagaa	Protospacer
    *.***   ************.* *********

2. spacer 3.2|4266603|33|NZ_AP014800|CRISPRCasFinder,CRT,PILER-CR matches to MF285618 (Serratia phage 2050HW, complete genome) position: , mismatch: 8, identity: 0.758

caagatcca---gcaggctctgctgatctggcagaa	CRISPR spacer
---tacccggacgcaggctctgctaagctggcagaa	Protospacer
    *.**.   ************.* *********

3. spacer 2.1|4264069|33|NZ_AP014800|CRISPRCasFinder,CRT matches to NZ_CP019309 (Phaeobacter inhibens strain DOK1-1 plasmid pDOK1-1-2, complete sequence) position: , mismatch: 9, identity: 0.727

ctgccgtatgaaaacggccgcgcggtcgacacc	CRISPR spacer
ctgccgaatggaaacggccgcgcgccgcgcaag	Protospacer
****** ***.************* .  .**  

4. spacer 4.2|4275644|34|NZ_AP014800|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 9, identity: 0.735

tcgacgatttcgccgatggtgtcagcgggactga	CRISPR spacer
cggtcgggttcgccgatggtgttagcgagacttc	Protospacer
. * **. **************.****.****  

5. spacer 4.2|4275644|34|NZ_AP014800|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 9, identity: 0.735

tcgacgatttcgccgatggtgtcagcgggactga	CRISPR spacer
cggtcgggttcgccgatggtgttagcgagacttc	Protospacer
. * **. **************.****.****  

6. spacer 4.3|4275715|34|NZ_AP014800|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 9, identity: 0.735

aagccgttatcgtcaatcagcacat-----tgccgctat	CRISPR spacer
cagccgttatcatcaatcaccacatgcgtaagcc-----	Protospacer
 **********.******* *****      ***     

7. spacer 4.3|4275715|34|NZ_AP014800|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.706

aagccgttatcgtcaatcagcacattgccgctat	CRISPR spacer
aaggcgtcatcgtcaatcagcacaccgtgagact	Protospacer
*** ***.****************..*. .   *

8. spacer 3.2|4266603|33|NZ_AP014800|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044333 (Methylocystis parvus strain BRCS2 plasmid unnamed2, complete sequence) position: , mismatch: 11, identity: 0.667

caagatccagcaggctctgctgatctggcagaa	CRISPR spacer
ggagatccagcgggctctgctggtctcagtcgc	Protospacer
 .*********.**********.*** .   . 

9. spacer 4.4|4275786|35|NZ_AP014800|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 11, identity: 0.686

catggtcgtctcgtcgaggcgggtcttcttcgtga	CRISPR spacer
gccggtcgtcccgtcgaggcggatcttcgccagcg	Protospacer
  .*******.***********.***** .*.  .

10. spacer 4.4|4275786|35|NZ_AP014800|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.686

catggtcgtctcgtcgaggcgggtcttcttcgtga	CRISPR spacer
gccggtcgtcccgtcgaggcggatcttcgccagcg	Protospacer
  .*******.***********.***** .*.  .

11. spacer 4.4|4275786|35|NZ_AP014800|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.686

catggtcgtctcgtcgaggcgggtcttcttcgtga	CRISPR spacer
gccggtcgtcccgtcgaggcggatcttcgccagcg	Protospacer
  .*******.***********.***** .*.  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 400622 : 448087 51 Rhodobacter_phage(20.83%) integrase,tail,transposase,portal,terminase,protease,tRNA,head,capsid attL 439996:440015|attR 455614:455633
DBSCAN-SWA_2 607530 : 645412 29 Acinetobacter_phage(28.57%) transposase NA
DBSCAN-SWA_3 796210 : 860670 46 Liberibacter_phage(16.67%) transposase,integrase,tRNA attL 802675:802702|attR 833626:833653
DBSCAN-SWA_4 864350 : 968702 57 Lactococcus_phage(12.5%) transposase,integrase attL 948714:948731|attR 964284:964301
DBSCAN-SWA_5 1676746 : 1794697 98 Paracoccus_phage(10.0%) integrase,tail,transposase,portal,terminase,protease,tRNA,head,capsid attL 1671743:1671761|attR 1802166:1802184
DBSCAN-SWA_6 2135157 : 2146200 14 Halomonas_phage(16.67%) tail,terminase,portal,head,capsid NA
DBSCAN-SWA_7 2150166 : 2156795 12 Ruegeria_phage(28.57%) integrase attL 2144080:2144097|attR 2165215:2165232
DBSCAN-SWA_8 2387067 : 2443137 54 Acinetobacter_phage(23.08%) transposase,portal,terminase NA
DBSCAN-SWA_9 2832980 : 2881591 51 Roseobacter_phage(20.0%) tail,protease,tRNA,head,capsid NA
DBSCAN-SWA_10 3224209 : 3281466 53 Enterococcus_phage(11.11%) transposase,integrase,protease,tRNA attL 3228820:3228837|attR 3278272:3278289
DBSCAN-SWA_11 3369985 : 3480482 56 Bacillus_phage(21.43%) transposase NA
DBSCAN-SWA_12 3490987 : 3544852 39 Enterobacteria_phage(25.0%) transposase,protease NA
DBSCAN-SWA_13 3573054 : 3616620 42 Mannheimia_phage(12.5%) transposase,integrase,tRNA attL 3578216:3578235|attR 3614425:3614444
DBSCAN-SWA_14 4209444 : 4214044 8 Paracoccus_phage(16.67%) NA NA
DBSCAN-SWA_15 4412757 : 4452339 40 uncultured_Caudovirales_phage(18.18%) tail,transposase,portal,tRNA,head,capsid NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_AP014802
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 74130 : 82653 6 Ochrobactrum_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage