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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_AP017302 Pseudomonas aeruginosa strain IOMTU 133 2 crisprs csa3,RT,WYL,DEDDh,cas3,PD-DExK,DinG 0 1 7 0

Results visualization

1. NZ_AP017302
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP017302_1 477708-477821 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP017302_2 2079894-2079994 Orphan NA
1 spacers
DEDDh

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_AP017302_2 2.1|2079919|51|NZ_AP017302|CRISPRCasFinder 2079919-2079969 51 NZ_CP042268 Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence 63791-63841 1 0.98

1. spacer 2.1|2079919|51|NZ_AP017302|CRISPRCasFinder matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 1, identity: 0.98

tccggcgttatttgccctacgcggagggttcccagctttcgctccgccgtt	CRISPR spacer
tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgtt	Protospacer
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Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 80061 : 131469 45 Salmonella_phage(14.29%) transposase,integrase attL 74669:74685|attR 118588:118604
DBSCAN-SWA_2 342820 : 423307 59 Pseudomonas_phage(12.5%) transposase,integrase attL 340376:340393|attR 409290:409307
DBSCAN-SWA_3 781311 : 861694 84 Pseudomonas_phage(35.9%) tail,plate,tRNA NA
DBSCAN-SWA_4 1630787 : 1639816 8 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_5 2637966 : 2692229 62 Pseudomonas_phage(75.0%) holin,integrase,tRNA,terminase,tail attL 2633113:2633129|attR 2647030:2647046
DBSCAN-SWA_6 2879645 : 2940977 67 Pseudomonas_virus(64.71%) holin,portal,integrase,tRNA,plate,capsid,protease,transposase,head,tail,terminase attL 2903150:2903179|attR 2941409:2941438
DBSCAN-SWA_7 6334118 : 6422293 103 Pseudomonas_virus(66.67%) holin,portal,integrase,head,lysis,plate,capsid,protease,terminase,tail attL 6352045:6352062|attR 6358810:6358827
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage