CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_AP017311	Leptolyngbya sp. NIES-3755 plasmid plasmid3 DNA, complete sequence	1 crisprs	PD-DExK	0	1	0
NZ_AP017310	Leptolyngbya sp. NIES-3755 plasmid plasmid2 DNA, complete genome	0 crisprs	PD-DExK	0	0	5
NZ_AP017308	Leptolyngbya sp. NIES-3755 DNA, complete genome	14 crisprs	csa3,Cas14u_CAS-V,cas14j,PD-DExK,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG	1	5	9
NZ_AP017309	Leptolyngbya sp. NIES-3755 plasmid plasmid1 DNA, complete genome	0 crisprs	RT,csa3,PD-DExK	0	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP017311_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017311_1

78011-78084

Orphan

Consensus_repeat	Method
GAAGCGTGAATACTGGTATTCGC	CRISPRCasFinder

1 spacers

PD-DExK

The CRISPR arrays of NZ_AP017311_1

>merge|NZ_AP017311|1|78011-78084|CRISPRCasFinder
GAAGCGTGAATACTGGTATTCGCACTTCGATAATTTTCATCGTCTCAAACAGAAGCGTGAATACTGGTATTCGC

>NZ_AP017311|1|1|78011-78084|CRISPRCasFinder
GAAGCGTGAATACTGGTATTCGC	ACTTCGATAATTTTCATCGTCTCAAACA
GAAGCGTGAATACTGGTATTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017311.1\|WP_068394658.1\|79234_80212_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|234698
NZ_AP017311.1\|WP_068394644.1\|72982_74422_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_AP017311.1\|WP_071837401.1\|80236_81049_-\|5'-3'-exonuclease	unknown	unknown	gnl\|CDD\|214682
NZ_AP017311.1\|WP_068394650.1\|77121_77811_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|349760
NZ_AP017311.1\|WP_068381335.1\|84348_84915_+\|ISAs1-family-transposase	unknown	unknown	gnl\|CDD\|227720
NZ_AP017311.1\|WP_068394640.1\|70134_70482_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017311.1\|WP_068394654.1\|78805_79027_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017311.1\|WP_068394666.1\|82909_83104_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017311.1\|WP_084762244.1\|64131_65175_-\|DUF1016-domain-containing-protein	PD-DExK	COG4804_PD-DExK_CAS-I:CAS-III	gnl\|CDD\|377634
NZ_AP017311.1\|WP_068381338.1\|83837_84377_+\|ISAs1-family-transposase	unknown	unknown	gnl\|CDD\|379382
NZ_AP017311.1\|WP_068394642.1\|70486_72160_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017311.1\|WP_068394638.1\|69345_69969_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017311.1\|WP_068394646.1\|74768_76004_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017311.1\|WP_068394636.1\|66083_69215_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223627
NZ_AP017311.1\|WP_068394633.1\|65238_66078_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226729
NZ_AP017311.1\|WP_068394648.1\|76142_77129_-\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|319251
NZ_AP017311.1\|WP_071837400.1\|78989_79187_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|307807
NZ_AP017311.1\|WP_068394664.1\|82271_82514_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017311.1\|WP_068394668.1\|83516_83783_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|227308
NZ_AP017311.1\|WP_068394652.1\|78210_78732_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP017311.1\|WP_068394658.1\|79234_80212_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	1.13401e-32
NZ_AP017311.1\|WP_068394650.1\|77121_77811_-\|ParA-family-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	1.78889e-21
NZ_AP017311.1\|WP_068381338.1\|83837_84377_+\|ISAs1-family-transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	2.15163e-24
NZ_AP017311.1\|WP_084762244.1\|64131_65175_-\|DUF1016-domain-containing-protein	gnl\|CDD\|377634	pfam06250, DUF1016, Protein of unknown function (DUF1016). Family of uncharacterized proteins found in viruses, archaea and bacteria.	1.64005e-85
NZ_AP017311.1\|WP_068381335.1\|84348_84915_+\|ISAs1-family-transposase	gnl\|CDD\|227720	COG5433, COG5433, Transposase [DNA replication, recombination, and repair].	0.000229106
NZ_AP017311.1\|WP_071837401.1\|80236_81049_-\|5'-3'-exonuclease	gnl\|CDD\|214682	smart00475, 53EXOc, 5'-3' exonuclease.	2.31894e-72
NZ_AP017311.1\|WP_068394668.1\|83516_83783_+\|site-specific-integrase	gnl\|CDD\|227308	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair].	5.76364e-12
NZ_AP017311.1\|WP_068394644.1\|72982_74422_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.37759e-10
NZ_AP017311.1\|WP_068394636.1\|66083_69215_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223627	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].	1.0946e-120
NZ_AP017311.1\|WP_068394633.1\|65238_66078_-\|hypothetical-protein	gnl\|CDD\|226729	COG4279, COG4279, Uncharacterized conserved protein [Function unknown].	2.3336e-72
NZ_AP017311.1\|WP_068394648.1\|76142_77129_-\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|319251	cd16393, SPO0J_N, Thermus thermophilus stage 0 sporulation protein J-like N-terminal domain, ParB family member. Spo0J (stage 0 sporulation protein J) is a ParB family member, a critical component of the ParABS-type bacterial chromosome segregation system. The Spo0J N-terminal region acts in protein-protein interaction and is adjacent to the DNA-binding domain that binds to parS sites. Two Spo0J bind per parS site, and Spo0J interacts with neighbors via the N-terminal domain to form oligomers via an Arginine-rich patch (RRXR). This superfamily represents the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system. parABS contributes to the efficient segregation of chromosomes and low-copy number plasmids to daughter cells during prokaryotic cell division. The process includes the parA (Walker box) ATPase, the ParB DNA-binding protein and a parS cis-acting DNA sites. Binding of ParB to centromere-like parS sites is followed by non-specific binding to DNA ("spreading", which has been implicated in gene silencing in plasmid P1) and oligomerization of additional ParB molecules near the parS sites. It has been proposed that ParB-ParB cross-linking compacts the DNA, binds to parA via the N-terminal region, and leads to parA separating the ParB-parS complexes and the recruitment of the SMC (structural maintenance of chromosomes) complexes. The ParB N-terminal domain of Bacillus subtilis and other species contains a Arginine-rich ParB Box II with residues essential for bridging of the ParB-parS complexes. The arginine-rich ParB Box II consensus (I[VIL]AGERR[FYW]RA[AS] identified in several species is partially conserved with this family and related families. Mutations within the basic columns particularly debilitate spreading from the parS sites and impair SMC recruitment. The C-terminal domain contains a HTH DNA-binding motif and is the primary homo-dimerization domain, and binds to parS DNA sites. Additional homo-dimerization contacts are found along the N-terminal domain, but dimerization of the N-terminus may only occur after concentration at ParB-parS foci.	1.16978e-09
NZ_AP017311.1\|WP_071837400.1\|78989_79187_+\|hypothetical-protein	gnl\|CDD\|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	0.000733325

>NZ_AP017311.1|WP_068394650.1|77121_77811_-|ParA-family-protein
MPVSNTSKKKPRASTKSSSKTAIAPLLVSILNQKGGVGKTTIAVNLSYALAQRGIETILIDGDPNRSTLVGARSIAHSETVPLRVMSETASVGQTGNCRHFFIDTKARPEPLDLEEIVQRSTLILIPSSTKQDELRVTASTVKLLDSVGSKKHRVVLNRVHPNNREETLSSFKSGLREQGIPVFESVIRDYAIYDEAFGRGMSIGQLRGKTAEKAWSDIQQLVEEILNG
>NZ_AP017311.1|WP_068394648.1|76142_77129_-|ParB-N-terminal-domain-containing-protein
MANRLAAALQNIGSMMPTADLDNLPAPKPSSGSETVIRLQLAQIEISDRVRQSHDEVLIRSFVETFRASGFRGVLWVRPTQNGSYKLIAGGTRYLAAQQAKLEWVDALVFEVDDGEALDLELEENLKRRDFNDLETVHGILRSLELELSLSREQIIALFSWNSRNRQPDGTHRAPRIDSILAEIPLEQLETYWSIIEHKFEKLGRYSPEGFRVNFLPLLKLPSSIQQAIMQGHLEGSKARLFSRITEDKIRDKLLKQAIAEDWSREQISEAVKEWREQHDPEIAKTEEMEFSSRIKSVLQRLSKASLSGRSRTKAEKLLKELETLLDA
>NZ_AP017311.1|WP_068394646.1|74768_76004_+|hypothetical-protein
MRIFFCFVLVLFTLVFPFSSRVQSATPNLESYLSSDQFQAGEAAFSAQLSQSPQDDRARFSLGVLQLMDGTERLMQLLYRYGLRQNTFTSLLPILRLPVPNNPKPQPITYEDTRQILQTLLADLTKVRSTLDSIQDRSLKVPIRMGLVRMDFNNDGKLETAESFWSVFTRISGIRTTEQAAKAFTINFDAGDVAWLRGYCNLISAIVETVLAYDERQLFNATAHLMFTKPQTPYPFLADGRKVFQFGDNLDLVDVVAFIHLVNFPVLEPQRLTNALQHLQSTLALSRESWKLIGAETDNDREWLPNPKQKGVIPNAVVTQPMIDSWLSFIGESEQLLAGQKLVPFWRSREVRGINLNKVFTQPQPFDLVLWIQGTAPAPYLELGKQTDSTVWQQLLSVFGGRFFGFAAWFN
>NZ_AP017311.1|WP_068394644.1|72982_74422_-|helix-turn-helix-transcriptional-regulator
MTREKKANQQHSESQKEQTPSTPRRKKKSSTIAKSPKSIAKAERPKTSPNLFPDQQTTRMASALPIWEASNILTQRKHLPWGNDSNGKLYYARDIGDGQGAIHFWVTENLEDERPVTLAGAAALAVIDTFDIRAACMHLIYAAHAAQMERPWEQELVIDDRQIEAYLGLKKRTDKNRQEKLALIEELAKQPCKITTFISWATQGRVKGFTVEEGRLWHLLGTRYHYQEDIFGNKELTSITFTFKAGLWAKYFLNEEGRRDRSAQCLQGNLPQAVLEHVMSLWQHREGAARLMVWLLFKTQFNRHEPLNVQTLMEVAYGTEKIDQARNNSESRKKLASTWDEDLLALHDRGWTVQFEPETYPIEIQPPGFRRDEAQRPRGFFEKLLSAFVWITPSEDWINSAAETPQSPTLVQSASSIELDCALTGDRVKALRQARKWSQRKLAQLSGLSQGLISMIENGERSISPENEQLLNQLFEQNA
>NZ_AP017311.1|WP_068394642.1|70486_72160_-|hypothetical-protein
MNLSASLPNGYVQEWNDQFLALFPHRYDYIWAEHSSPGTVVNWKTESRHPLGDRSIRQGGYLYGVRFGAETQYCLIDIDAGSPYHPKHDPFAICRIAGALEPLGLVEYLVCTSSYSGGLHLYFPFQSAHSSWQLAIAVATLLENSGFKLVPGQLETFPNPKPYIADGTPSLFNAHRLPLQIGSYLLNDEFQSIWSTQHTFVEHWQFAQCRNDLDTQLLKQILKQAKRRLFRVSGKAEKFINDLNAEIELGWTGYGQTNRLLGRITMRAYIFHHVLSGGQPLVGDALVEEIIETAKSLPGYHEFCRHQHEIEHRAEEWARCIQSSHYFHYGEQKGKFKLKSEELENAIDQVPSWNQQQSESARDRIRNAIADLLEKELLPSQATQRFKALLQYRIGGGSLYRHRDLWHPQFLMEDSLGDSQQLELEKSPQNIASLLQGDGGNHTSSNHPSDSELQVSATTGGNSLIEQDSSSLGNYSVEALLDDQAQREACEEAVQLAIKYQHIPLNISLSQTQIEQMQRYLDSGDPILIAEAMSWKQVNGLSLPQLPFCSVDDLLSS
>NZ_AP017311.1|WP_068394640.1|70134_70482_-|hypothetical-protein
MAKRPDIDKLRTTLGQLTLAQAKQLYAELGEIVKSLEQESADSEVVTAKGREVMDTQRIDNQLYQLELVRCGKAGCKCAGMDGELHGPYWYVYWREDGKLKSRYVGKRFKQIQSR
>NZ_AP017311.1|WP_068394638.1|69345_69969_-|hypothetical-protein
MAHAKGFGVKSTANRSTNKLTRQTWEGMPQLDLQTRTQLWQAGLLDLKLPDGVKPRSLTADEKHWLDRAAATEYISSEQQGQSAIFYTSSPPTFDLEEADWYLRPNDYWDAAPIRLQTVMNKFPAVLFQLSTSGQPPAFYPDRTPDYTAAQEAILRSIFRETVRLGWSLPQYKWFVLERFRKTTAQVTHEEVIQILEILQVMPGEAS
>NZ_AP017311.1|WP_068394636.1|66083_69215_-|DEAD/DEAH-box-helicase
MHILHGTWIPDDATDFVQRGKFYLWVETLEKLKSRKTEASLHPHHLLEKPLAAFLTEELGMSMLAPRSAFAPVFFLLPSTGEPCPSPELARYLEVDLPKTWEWQYWQVQSYSCPIAQIIKLLNEWHFLALHNLVEVQIGADLLFWYHYTQFLKHVFLNDRYIPTLKYRNLSTSKRKKASGFEIYPGWEILSTDYESQLAHYSEQMPLLCATGFQSRPSEPQMRNTISLLRHFSEVLLHDILAQTPIPATFEKQIANTLIQDCFSHTIAPANYTLEQYQQWQNWRNRIAQSQTEFAFYLCFALQSPQDPKEPWVLEFQAAARQDPSVRVPLSEYWTARTTKRKTLLKQFGQDFEQQLLMQLGYAARIYPKLWAGLETDQPIQILMNVEEANAFLQETAWVLEDAGYKVIVPAWWTPQGWRRAKVRMQAKGRKLGGNDKSKSYFSVDSLVDYQYELSINGEAVSPKEWEQLVRSKSDLVQFRGQWVQLDRDKMQQMLEFWKKHKDQHPELSLMDLIKLSAEGKDGFELEVAYDSTLSRMLAQLNDKSQLEVLPDPKQLNGTLRPYQQRGVSWLSYLESLGLNGCLADDMGMGKSFQVIARFVQEREAVSKSRKKQAQVPPTLLIAPTSVLGNWQKEIEKFAPQLTSYLHHGSNRVQALEAFQSAIANCDVVITSYTLIRKDIAVLASITWQRIVIDEAQNIKNPASAQTKAILKLPAQHRLALTGTPVENRLLDLWSIFNFLNPGYLGKEAQFRKGFEVPIQKNNDRIKSATLKQLVEPFILRRVKTDPAIIQDLPDKVEQKLYCNLTKEQASLYEAVVKDVLNQINDAEGIQRKGMILATLLKLKQICNHPMQFLQDESEFLPERSHKLQRLSEMIQEAIDEGESILVFTQFAEIGAALEKYLKHQHYRTYYLHGGTARAKRETMIAEFQDPETEPAIFILSIKAGGVGITLTKANHVFHFDRWWNPAVEDQATDRAFRIGQKKNVFVHKFVALGTLEERIDQMIEDKKKLASPIVGSDESWLTELNNEAFKQLITLNRSTILE
>NZ_AP017311.1|WP_068394633.1|65238_66078_-|hypothetical-protein
MAQLSKTWWGNKFIEALEKFTDSGRLSRGRSYRSSDRIRKLTIVDSVIVAEVRGNVNPYYGVYKEPIYETEIVLAPISPAQWTAAIAYIASKASFISKLLLNEMPDNIEDAFTQLNLNLLPKSKKDFHTECSCPDYSNPCKHIAGVCYRIAADLDRDPFLLFELRGISRITLQSELAKTPLGKALSSELDRQSITPQATASFYTRPEVQPMPTETTLRAFWQGSKSLPNIVERPPQSSVSGILVKKQGDFPPFWERDQSFIAVMEEVYERVKSKNRDLL
>NZ_AP017311.1|WP_084762244.1|64131_65175_-|DUF1016-domain-containing-protein
MAKSSSLLPEGYSLLLSELKERIRTAQIRAAIAVNRELVMLYWQIGRMILNRQKAAGWGAKVIDQLSKDLQREFPEIKGFSSRNLKYMRAFAEAYPDLTIVQEVLAQITWYHNLALLEKLKSTEERLWYAQQTVNNGWSRNVLILQIETRLHERQGKAMTNFDRTLPKPQSDLANSLLKNPYSFDFLSLGREAQERDLENALVAHIRDFLLELGVGFAFVGSQYRLQVGNEDFYIDLVFYHLKLRCYVIIDLKMTEFTPEMSGKMSFYLAAIDDLLRHPDDQPSIGLILCKSKSQTIVEYALRNINRPIGVSTHEIWESLPDTFKNSLPSIEQLELEMETLDGMGDR
>NZ_AP017311.1|WP_068394652.1|78210_78732_+|hypothetical-protein
MFPNLRKTLFALSERIGYSVGLVEASQVKTTILNHPEFVEFADRSLALYTDWRNHHEHRLKSIGIGEKPRTLIYELSEDLLAWFAEADLLDQYDIYRLLMNYWAETMQDDVHVLAQDDWTAGKVLRLLVAKKGEKLKETPNLIISPVPRLARLTYFCLLTIVCLKLLNEIEIY
>NZ_AP017311.1|WP_068394654.1|78805_79027_+|hypothetical-protein
MTPLKLREEGYQVLVENLGQADAIRFLQQARWGRGDDTQERSERLNATTRKEFWQNLQKIRDELQLEVKSESD
>NZ_AP017311.1|WP_071837400.1|78989_79187_+|hypothetical-protein
MSFSLRSKANPIRVTTHQLCPQVPEEYQGLLPTDEDWQRLLVYFLERHHSDRFQTYMNQHLPHWK
>NZ_AP017311.1|WP_068394658.1|79234_80212_-|tyrosine-type-recombinase/integrase
MPQSIPDPHFIIRTPAQVPVSESTSPIDLRGSRIDESLMARSLSSNSQRAYRQDLKAFTDWTQAPWAMVSPRFVAQFKEHLMREEKGQRVRSDATVRRILGTLKNFFGWMTRSRYLDFDPTLEIDLPKLPEPEADSLSQSEVERILDSAISETTLPERNLAVLLLLLHGFRASEVCALNLEDYQDGTRLRIRQSKSDSKGTVPLNAAGRAALNGYLGWRSERGEILSPESPMFVSYSRQNAGARLTYGGIRTLIDKLSEKTGIDFHSHQGRHTFATNRVLAGMNPHHIMTIMRQKNPVNFRRYTKAAEQAAAEREFYKFEDELDE
>NZ_AP017311.1|WP_071837401.1|80236_81049_-|5'-3'-exonuclease
MTFLLIDGTNLAHRLYHIQKATSSSEKLDLAKTMRRSITALIEKHQPTHCAIAFDNHEPTRRHQQYPEYKQGRKEKEFALRDALAQTEQYFIELGSGIVAPIGYEADDVLATLATKAKSMTKLIYSGDRNLFQLVDETTAILYPHKGKTSILDAVAVYEKMQVHPHQITDFKGLYGDTSDNIPGVPRIGAKTASTLLAKYNSNAERTASIEEIFNHLWQISPAIYQKLRFHQEIALLSKKLATLERELSLAPCTLQQLRCQSKKAKADMV
>NZ_AP017311.1|WP_068394664.1|82271_82514_-|hypothetical-protein
MNQTEFERKCTGFYADFGTCGHGKLPNPAQVISKFSTQTGSDDAISLVQEFVETTSYFVRICWTSCCIGDFPCSQEQYNQ
>NZ_AP017311.1|WP_068394666.1|82909_83104_-|hypothetical-protein
MCKWSEISNQIDLITQDVDSTASTAIFEKRVREHSVPKLKLSQDLKIVGSKWIEIPIQRDFYTE
>NZ_AP017311.1|WP_068394668.1|83516_83783_+|site-specific-integrase
MESFLAARELQPNSVRSYQQDLQQFMDYCDCPWNSVSQRQVIGFKTYLLIDRHLSNNTVRRVLQTLKSFYRWMHVSGHVTHDPTRGQG
>NZ_AP017311.1|WP_068381338.1|83837_84377_+|ISAs1-family-transposase
MSLIDHLKQIRDYRTQPQYPLWVILVLILMGTMSGCLGYRALEDFVERHQAALLAVMKLPHKRLPSYSTIRRTMVRVDFVALTNAFNAWAQETISVPEQTAIAVDGKSIKASVEEYDSAYQDFVAVVSAFCTQLGVVIGLQARHNGSESEITTVQTLLEVLQVQGVCFSMDALHTQKNR
>NZ_AP017311.1|WP_068381335.1|84348_84915_+|ISAs1-family-transposase
MPCTPKKTVEQIIDRGNDYVIAVKKNQPKLYEWIATQFEQHPADSIADDIEHTRNRTTQRTVSVLKPLPGLDAAWVGVQRLIRVERTGIRGAEPVHETMFYFSSLATDAEELSRRVREHWHIENRLHYPKDVVMREDIAPLCDGYAPANFAILRTIALNLFRLHGFASITKGIRHLAHNISHLFSFLQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP017311_1	1.1\|78034\|28\|NZ_AP017311\|CRISPRCasFinder	78034-78061	28	NZ_AP017311	Leptolyngbya sp. NIES-3755 plasmid plasmid3 DNA, complete sequence	78034-78061	0	1.0
NZ_AP017311_1	1.1\|78034\|28\|NZ_AP017311\|CRISPRCasFinder	78034-78061	28	MN850656	Flavobacterium phage fF4, complete genome	5567-5594	7	0.75

1. spacer 1.1|78034|28|NZ_AP017311|CRISPRCasFinder matches to NZ_AP017311 (Leptolyngbya sp. NIES-3755 plasmid plasmid3 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

acttcgataattttcatcgtctcaaaca	CRISPR spacer
acttcgataattttcatcgtctcaaaca	Protospacer
****************************

2. spacer 1.1|78034|28|NZ_AP017311|CRISPRCasFinder matches to MN850656 (Flavobacterium phage fF4, complete genome) position: , mismatch: 7, identity: 0.75

acttcgataattttcatcgtctcaaaca	CRISPR spacer
gttgtgataattttcatcgtgtcaaagt	Protospacer
..* .*************** *****

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 22440

Tupanvirus(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068394415.1\|3333_6480_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	9.1e-82	25.9
WP_084762239.1\|6497_15299_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	3.1e-188	28.9
WP_068394417.1\|15291_22440_-	hybrid non-ribosomal peptide synthetase/type I polyketide synthase	A0A2K9KZV5	Tupanvirus	1.9e-50	30.3

DBSCAN-SWA_2

27053 : 32159

Paenibacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068394422.1\|27053_32159_-	type I polyketide synthase	D0R7J2	Paenibacillus_phage	2.9e-37	29.5

DBSCAN-SWA_3

43407 : 53976

Planktothrix_phage(20.0%)

integrase

attL 27150:27165|attR 64652:64667

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
27150:27165	attL	NA	NA	NA	NA
WP_068394437.1\|43407_44103_+	DevA family ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-72	63.1
WP_068394439.1\|44385_44985_+\|integrase	tyrosine-type recombinase/integrase	A0A0A8WEV9	Clostridium_phage	8.8e-18	33.2
WP_068394441.1\|45133_48268_-	DEAD/DEAH box helicase family protein	A0A2H4J643	uncultured_Caudovirales_phage	8.3e-35	26.3
WP_068394443.1\|48273_48720_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_068394445.1\|48707_49091_-	hypothetical protein	NA	NA	NA	NA
WP_068394447.1\|49087_49711_-	hypothetical protein	NA	NA	NA	NA
WP_068394449.1\|49730_52565_-	DUF1156 domain-containing protein	Q684G2	Sulfolobus_virus	3.4e-43	25.0
WP_068394451.1\|52908_53976_+	ATP-binding protein	A0A2K9L596	Tupanvirus	1.8e-10	29.8
64652:64667	attR	NA	NA	NA	NA

DBSCAN-SWA_4

75748 : 77436

Gordonia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068394492.1\|75748_76678_-	ParB/RepB/Spo0J family partition protein	A0A1C9EHW0	Gordonia_phage	1.2e-08	47.8
WP_068394493.1\|76677_77436_-	ParA family protein	A0A0K2FLP4	Brevibacillus_phage	9.4e-17	32.4

DBSCAN-SWA_5

85398 : 94342

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068394498.1\|85398_89805_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	5.9e-103	27.7
WP_068394500.1\|89824_94342_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	4.0e-70	22.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_AP017309

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3589 : 37415

Wolbachia_phage(14.29%)

integrase,transposase

attL 17115:17132|attR 40943:40960

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068394378.1\|3589_4954_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	7.2e-76	35.4
WP_068393801.1\|5219_5459_-	hypothetical protein	NA	NA	NA	NA
WP_068393808.1\|5948_7256_+	MFS transporter	NA	NA	NA	NA
WP_068393809.1\|7352_7841_+	hypothetical protein	NA	NA	NA	NA
WP_068393810.1\|7947_8790_-	alpha/beta hydrolase	G9VYU4	Mycobacterium_phage	7.0e-05	25.0
WP_068393814.1\|9719_10427_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_068394380.1\|10561_11125_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_068393816.1\|12076_12367_-	fertility inhibition FinO-like protein	A0A2H4PAR5	Aphanizomenon_phage	5.5e-10	36.6
WP_084762231.1\|12387_12963_-	hypothetical protein	NA	NA	NA	NA
WP_068393823.1\|13081_13405_+	hypothetical protein	NA	NA	NA	NA
WP_068393825.1\|13544_14108_+	hypothetical protein	NA	NA	NA	NA
WP_068393827.1\|14100_14748_+	hypothetical protein	NA	NA	NA	NA
WP_084762215.1\|16264_16462_+	hypothetical protein	NA	NA	NA	NA
WP_084762216.1\|16813_17215_+	ATP-binding protein	A0A1C9LW10	Vibrio_phage	7.4e-05	23.9
17115:17132	attL	NA	NA	NA	NA
WP_068393831.1\|18496_19330_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_068393834.1\|19536_19773_+	hypothetical protein	NA	NA	NA	NA
WP_068393836.1\|21156_21369_-	hypothetical protein	NA	NA	NA	NA
WP_068393838.1\|21616_21886_-	hypothetical protein	NA	NA	NA	NA
WP_068381338.1\|21935_22475_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_068381335.1\|22446_23013_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_084762232.1\|23014_23665_-	type 1 glutamine amidotransferase domain-containing protein	NA	NA	NA	NA
WP_068393840.1\|23793_24678_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_068393842.1\|25262_26222_-\|integrase	tyrosine-type recombinase/integrase	A0A1L4BKH1	Thermus_phage	1.0e-12	31.6
WP_068393843.1\|26717_27806_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_068393845.1\|28083_29025_+\|transposase	transposase	NA	NA	NA	NA
WP_068393846.1\|29064_29604_+	hypothetical protein	NA	NA	NA	NA
WP_068393850.1\|29613_30315_+	hypothetical protein	NA	NA	NA	NA
WP_068393851.1\|30790_31513_+	hypothetical protein	NA	NA	NA	NA
WP_071837365.1\|31774_32518_-\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	4.8e-50	47.0
WP_068393852.1\|32532_33231_-	hypothetical protein	NA	NA	NA	NA
WP_068393853.1\|33241_34594_-	hypothetical protein	NA	NA	NA	NA
WP_084762217.1\|34895_37415_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2P9JZG7	Alteromonadaceae_phage	1.0e-11	24.4
40943:40960	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_AP017308

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_AP017308_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017308_1

165914-166004

Orphan

Consensus_repeat	Method
GGACAGAAACAGGTACAGGAACTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP017308_1

>merge|NZ_AP017308|1|165914-166004|CRISPRCasFinder
GGACAGAAACAGGTACAGGAACTAGCACAACCACAAGATTTGGCAGCGAGACTACTAGAAGTGTGGGAACTAACACAGGGACGGGAACAGG

>NZ_AP017308|1|1|165914-166004|CRISPRCasFinder
GGACAGAAACAGGTACAGGAACTAG	CACAACCACAAGATTTGGCAGCGAGACTACTAGAAGTGTGG
GAACTAACACAGGGACGGGAACAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017308.1\|WP_068379137.1\|169631_170729_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238014
NZ_AP017308.1\|WP_068379098.1\|161583_162066_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068379128.1\|168578_168812_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068379140.1\|170731_171184_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068379110.1\|163366_163564_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068379093.1\|160103_160457_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068379095.1\|161206_161527_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068379145.1\|171606_172080_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271177
NZ_AP017308.1\|WP_068379113.1\|163710_164301_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NZ_AP017308.1\|WP_068379104.1\|162340_163009_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068379101.1\|162086_162356_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068379117.1\|164412_164715_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068379125.1\|168033_168579_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068379122.1\|167111_167930_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068379143.1\|171155_171338_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068379148.1\|172557_174048_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	unknown	unknown	gnl\|CDD\|238576
NZ_AP017308.1\|WP_068379134.1\|169296_169635_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068379131.1\|168793_169300_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068379107.1\|163191_163383_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068379090.1\|159834_160062_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP017308.1\|WP_068379137.1\|169631_170729_+\|hypothetical-protein	gnl\|CDD\|238014	cd00057, FA58C, Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.	1.12484e-07
NZ_AP017308.1\|WP_068379148.1\|172557_174048_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	3.05116e-71
NZ_AP017308.1\|WP_068379145.1\|171606_172080_-\|hypothetical-protein	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	6.23152e-11
NZ_AP017308.1\|WP_068379113.1\|163710_164301_-\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	0.000186574

>NZ_AP017308.1|WP_068379117.1|164412_164715_+|hypothetical-protein
MSAVNITTQIPNAIVTIEQLATWAVLALCRVNPNDSVLEADNIRELIAQNGIFKAADGTERIFLRLSLELNPEYKVDDRKLWMNVKEVSQAQIPAAYTTN
>NZ_AP017308.1|WP_068379113.1|163710_164301_-|hypothetical-protein
MLSTLLACLLLWVLYLWLDRRRLLRMVGPTKPIEPRLSKPTRSAQSQRFFNAVTSAPTKPQFPNSKPISEINREQRRSKQVPPDAPKKPSQPVAPVQPIEPPLEVPQLPKPEPITPPIKPRSEINFDAIAKEAARQKQELSRVSSKTQYELHRLAHGDAKMIDRLLIHTRSRNPDRPEQWIWEKVIRDLERDRGYR
>NZ_AP017308.1|WP_068379110.1|163366_163564_+|hypothetical-protein
MKNKSEALHHTAKEMKKSYFVYVLISSFDGRIMGVYLKKKNAIANRGSSLDQIVKCLVEDTEDNE
>NZ_AP017308.1|WP_068379107.1|163191_163383_+|hypothetical-protein
MSEQTDVHEFFLDNGRALLKLPVPLTESDLEKIHGLIKLTWQAQACRLSDRPIEENFSHEKQI
>NZ_AP017308.1|WP_068379104.1|162340_163009_+|hypothetical-protein
MARFLSWMPASNYGQQWSIVFGSGCLTWFMLICFARILPPAIQLLTFLVPILCFIYALQILPKWQKEGRRKDLTESLIEREISHSMMNQHHRNLATMDLDHHQQMTELANLYPEQESEEWGSTPHAELAPPEQATYLLKVKQDVMQACGDIGWLCLEYLSSKATQISDKDGYISLEKIRSNWGRNYGLNTDNLRELLVALTGIQLGEWRDSTMREWRLLLTL
>NZ_AP017308.1|WP_068379101.1|162086_162356_+|hypothetical-protein
MFKMARFATLIGLGLAISSFIGLMARHFPPLTIGLWILTLILLVLMLMSYFAGPLLDQHFGWTEDTCFGIAIALFLTFILGGLIGWLVS
>NZ_AP017308.1|WP_068379098.1|161583_162066_+|hypothetical-protein
MRLGSSINNGSKVNRIMTPNDVMNVASGAPTPWNPGDTSEIRTEKVVTKHKNFTGEEADSLRLKAADRQRQAKNNRTAYKALRSIEQSDASDQASFRAYQTTVARVTATKKKTDVSKANTLYNLTPQYARMGYSLGAAQHEAQMKVSEYQAIYADVARRW
>NZ_AP017308.1|WP_068379095.1|161206_161527_+|hypothetical-protein
MANITKHKPIKWQAPPAEDYPVYRHNGTDYRLVPDSAFKKMLSDKDGFFWLALGMSMTVIAAVTQIVVNSMSPPATANQPMVIEKPVVVTQEKIVPTNCLAFCGQK
>NZ_AP017308.1|WP_068379093.1|160103_160457_-|hypothetical-protein
MSDTPIAQPPKTIASKPIAYYLSDAEDAENLSKIALDYGDRLEGLSEGQKISLLTNILAEIWDRPTTKRGYCPPVLTQALKSLSTDTLLGLLTATAEQLRHDQPQEESLAPEGWRSV
>NZ_AP017308.1|WP_068379090.1|159834_160062_-|hypothetical-protein
MTDEIERLIDENFTDDDCLKAAKRLINGAPRGKERDMLYLLKTFRSVDRLDPYEKALLQHSLMNWRDLVDFDYDE
>NZ_AP017308.1|WP_068379122.1|167111_167930_+|hypothetical-protein
MLPNNFSPAEHLQDVIRRTYNPEVREWFADLTTDNPDISTPRGSLRTACTHAENDTMDMTLSRMLLFDMVVKQRFQAQISSSDRDLNYRVLRRTRPRVKLFFLEDLKDVEKGFQPITGEISFRLMNQTSTTMSETEAKQLGTRIKSLFGASGGFVWRKGKELFSYTDWDKGYQLQLLARNKTEGKRIVEQVLDVQQHNPDWEFFNRTENEEPSTAFPTVPPTETILSKRRRLPRRRPIADVRFQYATLKIAGLPNEICLFDRSGRFSTALVK
>NZ_AP017308.1|WP_068379125.1|168033_168579_+|hypothetical-protein
MSRRKTAAELTRQLEYARRREARAAQEPAPKTGAPNRRPKIAVKYGCTSEAATEYTVQASQPGVQFFGGVAPLGLAVAEDDPTPPAGFKPNRILAMVADASPSYVRAEGSGRDYIRYARGARGSGTQSTFSSPISDTSTPTMASVRTKFGTVANAIRANLGGPYGRVWFEAERLPLAESGQ
>NZ_AP017308.1|WP_068379128.1|168578_168812_+|hypothetical-protein
MPELVLATPALWYPGQDESEWQAELQAMMDRALVTSEFLKGNVATDVFLDCIAEEYGDPLQVAEAWEPELEPCLILL
>NZ_AP017308.1|WP_068379131.1|168793_169300_+|hypothetical-protein
MLDLALVESGSFRLVYLRKHIGNKELAKIRAPMIEMIELPITIASRVLIVSAVHIAAKPSWRVAGTLFQEVAGVGVNAAATYGFGPAGTAVVDVSRRTILLNSTELHIFPKLATEHRYRFEAVRWLPDVTLGVWEYIGPETDTTEELLQTVKVDLVRVENKINILMNS
>NZ_AP017308.1|WP_068379134.1|169296_169635_+|hypothetical-protein
MNLAELGAKLPDQTIQWRGFGSPTLIDLNALTGEVITPESVFLESIAKLLEGIFQLQVDVNADRAAENKPPIAFVDRDVEVSATGNPVYVYTVRVEVNTQGALNNLVNPLES
>NZ_AP017308.1|WP_068379137.1|169631_170729_+|hypothetical-protein
MTWNAIATIQVTQEWRFTPVIASHLGYFRLSFETAGVPLFIATVNPTTGDYFDQRRIVATPYAQIFEFECPSVFVNRAIALRLPASLTPFEVQVEVSDTPVASSSGSNGGTVDFTPVLNNQAQILQALESLEVDLDPQIVAQIAAIVNRQLNHTSQLNQILEQLDQPAIADPAIVNALTTLLNGQTAQSSQFGQFQFRQTEHSALLQQVLSGQTQILQSISSPAAPPQYELITTPYVASQSSVYMGLAATYANLNDNNGATGAGTNSSPNEWIKAAFESPVTVRAVRVGGGNLPNWGTVAGYLNGRVLQYSTDDVNWLTIQTISNVQDSGPGQFALFPLAQPITARFWRIRSSDWFALTELRFFS
>NZ_AP017308.1|WP_068379140.1|170731_171184_+|hypothetical-protein
MKYLAQTQPAQPIALPPVPQLIEGGIVAAIVVYIIKEGVAFFKSKDASEERLTRTLIEDLRSTRAHELRQQSEVLGQMKQSYDKIATAIERMSVATSEINTALQISKRTETEIFHALRQNHQALLLLNEKLDRLLTTPGHSNGKHLTSRS
>NZ_AP017308.1|WP_068379143.1|171155_171338_+|hypothetical-protein
MENISHLDPENVRKIKNHVYCLLAGLDAMESHPINLLEQATGLEQLAQELRAISAGRIAA
>NZ_AP017308.1|WP_068379145.1|171606_172080_-|hypothetical-protein
MGILATYGLRPHEAFRLDFDALKQCDRIVQVQRNTKTGKRQVWAYHPEWFEAFHLEHVQLPSIDLNRPNEAIGRSVNHYFRDANVPFNPMLLRHRWAIRSLEYGLDYKLAARMMGHSYIVHERIYHRWIDRTVLQSAYDRSLENHQVPPLPKDSDKS
>NZ_AP017308.1|WP_068379148.1|172557_174048_-|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase
MRSIEQRLFDAGMPVAALMEKVAGRLSDRISNLFPPCKVGILAGSGHNGGDALVVARELHFRGYEVRLGCPFSRFKALTDSHLQYAKSLGIPCESDIESLRSSNFLIDGLFGFGLTRAIEEPIFSVINRINEWNLPIASIDLPSGLHTDTGRSLGTAIRATHTLCLGLWKLGLLQDEALEFVGQAELIDFDIPLADIAAILGDSPQIQRVTSDWAMSALPLKRPASTHKYKMGHLLLICGSRRYAGGALLTGLGGRSSGVGMLSIAVPESLKPMLSSHLPEALIIGCPETESGAIAKLPDLDLSSFNAIACGPGLTLDATSIVQQVLESDRPIVLDADGLNALAQFGTIPTLQKRQDATILTPHLGEFKRLFPDLEVGCRATAVREAAKSTGAIVLLKGARIAIASPEGQVRINPESTPALARGGSGDVLTGLMGGLLAQNLAVQSQISLLDLTQTTAWWHSQAGILAAQTRTELGVDAHTLTQFLIPTLTASKKS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_AP017308_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017308_2

769038-769144

Orphan

Consensus_repeat	Method
GCTTGAGCAATTTCTTGAGGACGATTGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP017308_2

>merge|NZ_AP017308|2|769038-769144|CRISPRCasFinder
GCTTGAGCAATTTCTTGAGGACGATTGCCCGCAATCAGTTTATCTAAATTCGCTTGAGCCGCTGTGAGTTGAGCTTCTGCTTGAGCAATTTCTTGGGGACGATTGCC

>NZ_AP017308|2|2|769038-769144|CRISPRCasFinder
GCTTGAGCAATTTCTTGAGGACGATTGCC	CGCAATCAGTTTATCTAAATTCGCTTGAGCCGCTGTGAGTTGAGCTTCT
GCTTGAGCAATTTCTTGGGGACGATTGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017308.1\|WP_068380535.1\|776002_777400_+\|oligosaccharide-flippase-family-protein	unknown	unknown	gnl\|CDD\|240532
NZ_AP017308.1\|WP_068380511.1\|758838_760194_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341202
NZ_AP017308.1\|WP_068380539.1\|779636_780761_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340860
NZ_AP017308.1\|WP_068380522.1\|763088_766100_+\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NZ_AP017308.1\|WP_068380534.1\|774958_775969_+\|polysaccharide-export-protein	unknown	unknown	gnl\|CDD\|224512
NZ_AP017308.1\|WP_068380510.1\|756790_758839_+\|SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223363
NZ_AP017308.1\|WP_068380547.1\|780788_781721_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_AP017308.1\|WP_068380518.1\|762351_762759_-\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|379205
NZ_AP017308.1\|WP_068380533.1\|772658_774944_+\|polysaccharide-biosynthesis-tyrosine-autokinase	unknown	unknown	gnl\|CDD\|349772
NZ_AP017308.1\|WP_068380512.1\|760202_761480_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226459
NZ_AP017308.1\|WP_068392647.1\|778713_779640_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133055
NZ_AP017308.1\|WP_068380536.1\|777404_778709_+\|O-antigen-ligase-family-protein	unknown	unknown	gnl\|CDD\|225844
NZ_AP017308.1\|WP_068380523.1\|766767_768027_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|182528
NZ_AP017308.1\|WP_068392639.1\|766089_766755_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_AP017308.1\|WP_068380531.1\|772174_772579_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239292
NZ_AP017308.1\|WP_068380528.1\|769922_770129_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_084761935.1\|770541_771981_+\|sugar-transferase	unknown	unknown	gnl\|CDD\|274398
NZ_AP017308.1\|WP_068380520.1\|762759_762981_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068380516.1\|761454_762156_+\|TIGR02646-family-protein	unknown	unknown	gnl\|CDD\|131694
NZ_AP017308.1\|WP_068380503.1\|755291_756683_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779

Protein	Function_ID	Function_description	E-value
NZ_AP017308.1\|WP_068380535.1\|776002_777400_+\|oligosaccharide-flippase-family-protein	gnl\|CDD\|240532	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	4.51188e-56
NZ_AP017308.1\|WP_068380511.1\|758838_760194_+\|hypothetical-protein	gnl\|CDD\|341202	cd17521, RMtype1_S_Sau13435ORF2165P_TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Staphylococcus aureus NCTC 13435 S subunit (S.Sau13435ORF2165P) TRD2-CR2, Escherichia coli E24377A S subunit (S.EcoE24377ORF286P) TRD1-CR1 and Pseudoalteromonas species P1-13-1a S. subunit (S.Psp1bORF2093P) TRD2-CR2. Staphylococcus aureus NCTC 13435 S subunit (S.Sau13435ORF2165P) recognizes 5'... TCTANNNNNNRTTC ... 3', and the recognition sequences of Escherichia coli E24377A S subunit (S.EcoE24377ORF286P) and Pseudoalteromonas species P1-13-1a S subunit (S.Psp1bORF2093P) are undetermined. The restriction-modification (RM) system S subunit generally consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. For example, Staphylococcus aureus NCTC 13435 S subunit (S.Sau13435ORF2165P) TRD1 recognizes TCTA/TAGA, and -TRD2 recognizes GAAY/RTTC. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. In addition, this family includes RMtype1_S_TRD-CR_like domains of various putative Helicobacter type II restriction enzymes and methyltransferases, such as Hci611ORFHP and HfeORF12890P.	2.76831e-77
NZ_AP017308.1\|WP_068380539.1\|779636_780761_+\|glycosyltransferase	gnl\|CDD\|340860	cd05844, GT4-like, glycosyltransferase family 4 proteins. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to glycosyltransferase family 4 (GT4). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	1.32894e-105
NZ_AP017308.1\|WP_068380522.1\|763088_766100_+\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	6.50512e-82
NZ_AP017308.1\|WP_068380510.1\|756790_758839_+\|SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	1.75756e-68
NZ_AP017308.1\|WP_068380547.1\|780788_781721_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	6.45967e-33
NZ_AP017308.1\|WP_068380518.1\|762351_762759_-\|PIN-domain-containing-protein	gnl\|CDD\|379205	pfam13470, PIN_3, PIN domain. Members of this family of bacterial domains are predicted to be RNases (from similarities to 5'-exonucleases).	4.89881e-17
NZ_AP017308.1\|WP_068380533.1\|772658_774944_+\|polysaccharide-biosynthesis-tyrosine-autokinase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	3.63463e-61
NZ_AP017308.1\|WP_068380512.1\|760202_761480_+\|AAA-family-ATPase	gnl\|CDD\|226459	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only].	2.54665e-29
NZ_AP017308.1\|WP_068392647.1\|778713_779640_+\|glycosyltransferase	gnl\|CDD\|133055	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	4.24366e-36
NZ_AP017308.1\|WP_068380536.1\|777404_778709_+\|O-antigen-ligase-family-protein	gnl\|CDD\|225844	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].	9.31449e-17
NZ_AP017308.1\|WP_068380523.1\|766767_768027_-\|FtsX-like-permease-family-protein	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	6.85953e-74
NZ_AP017308.1\|WP_068392639.1\|766089_766755_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	1.86662e-116
NZ_AP017308.1\|WP_068380516.1\|761454_762156_+\|TIGR02646-family-protein	gnl\|CDD\|131694	TIGR02646, Hypothetical_protein_SMc04429, TIGR02646 family protein. Members of this uncharacterized protein family are found exclusively in bacteria. Neighboring genes in various genomes are also uncharacterized or may annotated as similar to restriction system proteins. [Hypothetical proteins, Conserved].	4.11104e-19
NZ_AP017308.1\|WP_084761935.1\|770541_771981_+\|sugar-transferase	gnl\|CDD\|274398	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP), E. coli WcaJ, Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes, such as Sinorhizobium ExoY and Lactococcus EpsD, lack the N-terminal domain and are not found by this model.	3.89593e-130
NZ_AP017308.1\|WP_068380534.1\|774958_775969_+\|polysaccharide-export-protein	gnl\|CDD\|224512	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis].	3.61447e-30
NZ_AP017308.1\|WP_068380531.1\|772174_772579_+\|hypothetical-protein	gnl\|CDD\|239292	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.	0.00489848
NZ_AP017308.1\|WP_068380503.1\|755291_756683_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0

>NZ_AP017308.1|WP_068380523.1|766767_768027_-|FtsX-like-permease-family-protein
MGKVIRSSPISLLEIFTMAVEALWSNRLRTSLTMLGVIIGIASVITVTSVGQGVQRATEQQIQALGTNVMLVLSGVARSGGISQGSGSASTLTLEDAQAVGRQVPAAEGVTAFLQRGGQVVYNDQNDSTSILGIDLNYSDVKEIKPQEGRFFTQDDMQNANSVVVLGSAVRDSLFSPGEPAIGVNIRIQNNRYTVVGVAESKGSVGGQDQDDRVYIPLTNMSSRIVGNNSLNGRAISGFWVKAKDQIELEAAQFQVTNLLRIRHNIYPPKPDDFRISNQVDIINTFSSVVGLFTILVSAIAGISLIVGGIGIANIMLVSVVERTREIGIRKAIGATNSAVLNQFLTEAILVSMLGGAVGVAVGLGLAFAASSLFSFPFVISGLSIASGLTLALFVGLIAGVIPARNAARLDPIAALRSD
>NZ_AP017308.1|WP_068392639.1|766089_766755_-|ABC-transporter-ATP-binding-protein
MIWMENITKTYRLGDIDVPVLKGIDLAIEEGEYVAIMGMSGSGKSTLMNIIGCLDRPSDGHYVLEGRNLTTLENDELAYIRNQRIGFVFQQFNLLNRSTALENVMLPMVYAGIPRSQRKQRAAEALTRVGLAERLSNRPNQLSGGQQQRVAIARALVNRPALVLADEPTGALDTQTSTEVMSLLTELNQQGITIVIVTHEPDIAAQTRRVIHVKDGLVVSN
>NZ_AP017308.1|WP_068380522.1|763088_766100_+|type-I-restriction-endonuclease-subunit-R
MSIHTETAFEQTIEAHLLNHGYISLSPKKFDRDRAFFPEPILHFIQQTQPKEWQRLEKLHGENTAAQILSDLDKWLNSHGSLQTLRHGFKCYGRTLRIATFKAAHTLNPELEAHYQANQLTLTRQLQYGKKSGIIDLTISLNGIPLITIELKNPLTGQTAEDAKKQYCRDRDPRELIFEFNRRTLVHFAVDTEVVWMTTRLAGNATTFLPFNQGYEGGAGNPPNQTSYRTAYLWEEVLERDSCLDLFARFLHLQTDEKQDDTGRKYKKETLIFPRYHQLQAVRSLTQAAQTEGIGHNYLIEHSAGSGKSNTIGWLTHRLASLHTETNERIFDSVIVITDRRVLDQQLQSTIYQFEHRQGVVQKIDKDSKQLTQALESAVPIIITTLQKFPHVTKQLLKLAEERKGNAVLPTRRCAVIIDEAHSSQSGETAIELKSVLGGEQLQQEAKKRAEEEGLENLEELFKIMAARSHQANLSFFAFTATPKHKTLKFFGRNGQAFHKYTMRQAIEEGFIMDVLKNYTTYKTYYKLINHSAEDPNVERKTAAAALARFLRLHPHNIAQKTEIMVEHFNAVTRHKIGGKAKAMVVTGSRLEAVRYKQSFDRYIQSKGYEIKSLVAFSGIVEDDKFPDQTYTEEALNGIRESELPEQFATDSYQVLLVAEKYQTGFDQPLLHSMYIDRRLAGIQAVQTLSRLNRTHPLKEDTFVLDFINDREEIREAFKQFYEGAEMGEEATPEQLYQLIANLDQTGIYLSEEVDRFCTIYFKPKQRQNQADHQAMNACLDPAVDRFIHFQAEDPDEATLWRNQLTAFRNLYAFLSQVIPYQDSDLEKRYVFLRHLSSKLPRRSEKIQYDFDSEIQLEYYRLQKISEGSIELKQGYRYPLDGPKSVGSGRVKESEVPLSQLIGLINDRFGTDFNQADQLFFDQIIETAVNSSELQQAAQANSRDNFDLLFKQILQMLFVERIDQNEGIFAQYMSDPAFQKFVRDGLSKEVYNRLNQNSDRFSY
>NZ_AP017308.1|WP_068380520.1|762759_762981_-|hypothetical-protein
MTLQELQKQVLQLPIRERWQLVQTVLLSLQEETSLEKKPKNLSRLRGIAKVAPTPTDAENAEDYATYLTEKYQ
>NZ_AP017308.1|WP_068380518.1|762351_762759_-|PIN-domain-containing-protein
MRVLIDTNVVLDFLQEREPFVEDAARLFERIDAGEIEGFIAATTITNIYYIVRKAAGVEASEEAISQILSDLQICAVDRAILEQAVILKFRDFEDAVQYACAIAYGVDAIVTRDLSGFTSAAIPVKSPRELIGLL
>NZ_AP017308.1|WP_068380516.1|761454_762156_+|TIGR02646-family-protein
MRWIRKQNEPRQLTEWRLKYKKDPNLGYELLRKNKEAIAAVHFSLLEEQGYLCAYTGTGIDENSSHIEHIKPQTHCQPIETVTYTNIVACCPGANKPDPPYGAKKKDHWPSPAEAHLFVSPLEPSCESKFRYAKNGEIKYQAGDLAAQITIKKLGLNHKLLIATRKATIQGVLGKTNNLSLKDAKQRLKQLQNQNSGKLEPFCFVIIQALEKYIKSIEFRRAQKQIQSKKTKK
>NZ_AP017308.1|WP_068380512.1|760202_761480_+|AAA-family-ATPase
MLLKNLTLNNVRAFSHAEFTFQPGMNLIVGINGVGKSTVLEVIRIVLATILPKFSLATIERTIKFKADDIKVGESSLTVSLNLQVLDTPIQCEFQYLRKAEVKLNPNNQVILDRLKQRVIPLAVYFSPQRAIASMAKSKDITYGVSTAFVDALKHRELRFLEFADWLFAQENLALENVPHVEKFIDTLNSVISYFLDSLGRPRAFQLVKIRDVKDKPHHKNIDVTTNFRIEKSGVGLTVSQLSDGERGMLALVLDLARRLAIANPDLEDPLQGKAVVLIDELDLHLHPKWQRTIVQKLTTTFPNCQFIATTHSPLIISEVPSSGLILLSQEDDQINVIQSGLYGFGFDTSWILRHLMDTDSRNPEAQTQIDRVEEALEDGDLDLARQHLEQLKTMLHGKDDEVIRLEASINNLEALADAMDTEAE
>NZ_AP017308.1|WP_068380511.1|758838_760194_+|hypothetical-protein
MNLAILDRSSFSTENRSFTWIESLPSGWQAVRLRHLAKEPLAYGANEAALEDSAAFPRFIRITDINEDGSLRPETFKSLAPEIAEPYLLKEGDVLLARSGATVGKAFIYKREWGKACFAGYLIKFSCNQNLLLPGFLFAFTQSSIYWSQVRSGTIQATIQNFSAEKYSEICIPLPPVYQQLRIISYLDRETEKIDALIAAKKRLLELLGEKRRSMITHAVTCGLDANAPTKDSGLEWLGTVPVHWTIEHLKYHLSDIEQGWSPQSDSYPAEIEEWGVLKVGAVNGWNFNPNENKRIPPDLIIPLEHEIKPGDILISRANTTELVGSASLVKEVRPKLLLCDKLYRPVLQSRRLIPEYLVFYLRSSSGRFEIESDATGASGSMQNISQGTIANLWIPIPPKNEQAQIVTHIENQLSLLRQLEETTQQAIALLQERRTSLISAAVTGQLEIPS
>NZ_AP017308.1|WP_068380510.1|756790_758839_+|SAM-dependent-DNA-methyltransferase
MADHHQLSNFIWQVADLLRGPYRPPQYERVMLPLTVLRRFDCVLAPTKLQVLQAYKKWEGKPDSLIDPILDQVAGERFHNHSEFSFEGTDDGSGKRRGGLKGDPDNIDKHLISYINGFSKNIREIFDRFEFSAEIEKMREANILYLVVSKFCEIDLHPDSVDNIEMGLLFEDLIRRFNEAANETAGDHFTPREVIQLMVDLLFDPDDAVLTQGVICKMLDPTCGTGGMLAEAQKYLRENNAAAKLFVFGQDFNPRAYAIAASDLLLKGNDKSDIRFGDTLIDDQFPDDRFDYLIANPPFGVDWKRQQKDVKLEHDRYGFAARFGAGLPRVNDGSLLFLQHMVSKFEPVDLEQKKNGSRLAIVFNGSPLFTGGAGSGESEIRKWIIENDWLEAIVALPEQMFYNTGIGTYIWVVTNRKQKHRKGRVQLIDGRELWKPMRRSLGDKRRYLGEEDISSIVQEYGRFAETKISKIFENEDFGYNRVPIERPLRLVYEMNLQRKSDFLDRVPHLLDDVQEIDRKLGREPRTDWNEFDRLVKQLLANRESKWTAAERKFFRDVFTQVEPEADPVVLKERKSKREPNARVWGWFPVDDGKVERLYEADSKLRDFENVELKDEVVRYFCEEVEPHVSDAWADGEKIRSAYEINFNRYFYEYQPPRPLAEIDVDLREMEEKILHLLREVIG
>NZ_AP017308.1|WP_068380503.1|755291_756683_-|class-II-fumarate-hydratase
MNSTRTETDSMGAIAVQSDRYWGAQTQRSLLYFAIGQDKMPTELIRAFGILKKAAAIVNQQLGKLPVEKATLIIQAADEVIEGKLNDHFPLSVWQTGSGTQTNMNANEVISNRAIDIAGGVLGSKNPVHPNDHVNMSQSSNDTFPTAMHIAAAESIHQQLLPMIKKLRDALQEKSNEFEAIIKIGRTHLMDAVPLTLGQEFSGYVAQLDQAIARIEATLPGLYELAIGGTAVGTGINTHPEFAERSAVEIAKLTELPFISAPNKFAALAAHDAIVFTSGAIKTLACALMKIANDLRWMGSGPRCGLGELVLPANEPGSSIMPGKVNPTQCEAMTMVCVQVMGNDNAIAIAASQGNFELNVFKPVLIHNLIHSIRILSDACRSFTEHMVVGIQPNRDRITQFLENSLMLVTALNPKIGYDRAAKVAYKAYQENSTLRQACIELGFLTGEEFDQIVRPEQMIYPS
>NZ_AP017308.1|WP_068380528.1|769922_770129_+|hypothetical-protein
MCVDLLRLKTAASERNSVSEVAFTQPVQACNASHYRITFSGRIYLVSLRDSFNNKPVFTRSSCVAPHL
>NZ_AP017308.1|WP_084761935.1|770541_771981_+|sugar-transferase
MLIPKPISSSRQPPFLGRDLRAPTWKHTYKAFPIKGLRVVTLIVLDAIALGGAWHLATHFSTPWSSFWAESIALLLVLGIEFCVLMAGGFYQPGESRRNYLGLIRTLTIAEVLLWLVAYFYQPSQFISRSHFVLFWVLSVLFVVIERYVIDVVLHSLRQRGMVRYAVLLIADPDEQKRSISLIERENRYNLVQVLSCDALDAESRSETFEIVQNLGISEVFVSWSAIKERLFLSWQFQSLGIVLNVIPSGFESLFQGSKFWTMRSFPALSFSPPTITGSDFWIKRGFDICLAFVLLIVLFPIYSLIAIAIKLDSPGSIFYRQVRIGLHGQPFKAWKFRTMVENADQLQQHLEAQNEMKDGILFKLKDDPRITRLGRFLRRSSLDELPQLINVVLGEMSLVGPRPLPVRDVEKFLEHHLVRQEVLPGITGLWQVSGRSSIENFEEVIQLDLTYIQNWSLGLDLAILLKTVQVVLCKTGAY
>NZ_AP017308.1|WP_068380531.1|772174_772579_+|hypothetical-protein
MTKRCDRNRKRSKRRSIYCPKHPAIYLESSSPKYPVFADQAAHLQQRGISRKNAQLAIASNQTVTLSGEWLEAFWCNECQRVEWYHVRKQSDRYQLSIAPSEIWQRVTGVTYPNFNPSVSEFTQRQSRGAASSR
>NZ_AP017308.1|WP_068380533.1|772658_774944_+|polysaccharide-biosynthesis-tyrosine-autokinase
MKQPQNPSQTPASDAIELDLRKTFMMLTRYWLPATLAFSLVTVPAAVFLMTRKSSYQATGAVLVKKQASTTSVLGLQVDVGEIESLDKSGPLTTQAELIKSLPIVQRTIEDLNLQDDDNAPLKVEDFLKRLKVTPVNRSDILRVEYRSNDPMEAAEVVNHLMQLYVQDNLTANRAEAKSAREFIQSQLPEVERNVRQVEGEIRAFKENNQIVALDQEQRNSVEITSDFNKRIEDTRAKLVGAIQKVNALKNQVGTSNEIGVAQVALSQSTGVQETLKRSQELQNQLAVTLGRYRAGHPKVTELQRQVSELQELLQQRVATVVGQTTAPRATEDDLQMGQFRQQLVTELVMAEIEQMSLEGQVESLSGALSAQQQRASTLPRLSTRQAELERRLRASQSTYESLLSKLQEIQVAEQQQLGNARITSKALIPEKPTLLTSALGRSLLLAGSGGAGLLLAFAATVLAYLLDRRIRTVQDLKDVFDYPVLGMIPSFTDSGLSQVMESLTKNLQKLGNLNVVDTELVVRDAPRSAPAAAYQMLQSNLKYVSSDREARAIVVSSCIPSEGKSTVSANLASAFAQIGKRVLLIDADLRRPRQHHVWSLGTNDVGFSDVLVGVSTLEDALCPVMENLWLLPAGKIPPNPIALLDSERMSFLMQVFLERYDYVIFDTPPLSGIADATILGKRADGLVLVSRLGVINFDTAKNAKEYIRQAEQKVLGIVVNDVNPKDEPDSYFYGSYYYYGSENSGAIQNGRTPVGSNRQR
>NZ_AP017308.1|WP_068380534.1|774958_775969_+|polysaccharide-export-protein
MLNLRHALIVLILGASPIAATPILAETKPVSSPLPLLRVDPSPNSAYVLGKGDRISIAVANYDEFNGERTLMPDGTITLPLIGSLAAAGLTTEELSRQLQVRLNKLVIDPVVTVNLIGLRPVLISVSGEVQRPGPRQFEATDGKANLLAAISSAGGITRNADISQVEVKRRSQNGQTTSRRFDLWKVVNAEQLPEDFTLRDGDAIVVPKLTGDAQIDRLAVARSSLSASAVRVRVVGEVTRPGEVQVPPDGSLSSAIAIAGGPTDDAKMNEVKFIRVNETGQAEQRTLDLRNLSDSTQVQDGDVLIVPKKPVARTLDTAGRVFGPLGFFLRLFTGF
>NZ_AP017308.1|WP_068380535.1|776002_777400_+|oligosaccharide-flippase-family-protein
MSLRTQAIRGGLFLAVRQSVGILISLGGVLLLTRLIGPAQYGLYAAGLGVYTYLQTVCQLGVSVYLVRTQDEDDRALYDQAFTLLLLLGIAGATIAIAILPWLEQWIRIDGFRSIAQGMVLGLPIALVAQVPLAKLERNLDYRRVATFELWNQLFFYVIALPIALQSQTAWAPLVGWWAMQLQAMLLFFWGASYRPRLCWKPRLLRDLLSYSAGFSVSLWIWQLRNLVNPLVVGRFVGAEAVGYLALAMRLVELLSFVKSATWRIALATLARFQNDRERLRKAVSDGMSLQLLALGPLLTGFAIASPLLMPVMFGDQWLPVIHIYPFIALGSLSNAMFNLHSSVLFVLQKNWEVTIFHLIHVLLFAGASFVLVPTLGIQGYGWAEIVALLSYWLIHQFLVQQIGSPSYELSIIWWFAFSISLFTAQFGWWACIGLGLIAFLPETRQKLSEVFEQVKGLRSRHQAN
>NZ_AP017308.1|WP_068380536.1|777404_778709_+|O-antigen-ligase-family-protein
MRKINVTFGGNSSWISQTTSGILQFLEEAFVVGVLLFYTGMIGPLMNQGIFDRTSRLETVLGALIFAIVVPLLLINLKQAVRVLMRSPALIVLTTFLCVSLLWSDAYSTSARGIFLLLRASAFALYFATRFSLKQQFRLLAWCLGISIVGSFLLAVVLPNYAIMGSDPGLSGDGTQESIHAGSWKGVFGHKNVLSRYMVLSTIVFLLSLVYSRGYKVVMWIGLASSIVLVALSTSRTGLAVLLFLVFLVPLYSRLKFKSIASSILPILLVLIGGSALIFFVSNTEMVLGTLGRDATLTGRTELWTASWEQAMQRPLVGHGYGAFWRTMLAYEVWTKVGWAAPHSHNGYIDALIDLGFVGLALAIVSSIVVAFYGLRFLKQGKSLEGIWILLFLTFLLFYNFTESSFFRQTFLWLVYFSISLSAASDHLISQSDE
>NZ_AP017308.1|WP_068392647.1|778713_779640_+|glycosyltransferase
MTKKPVVSIIVNNYNYAQFLPIAIESALSQTYPDVEVIVVDDGSIDRSRTIIQQYGSSIKAVLKENGGQSSAFNAGFQASTGEIICFLDSDDYFMPDKISAIVEVFNQHPEIDWCFHGLKLIDKNANLIPSKTTLTTRLWDFRDSIRQGQLLNVPTATSALCFRQSLLKQILPMPEEIKITSDNYIKYLALALGKGMFLSNQLAVQRIHGDNHYTFNPNLPKLQEKTLFLTAYWIEHHFPFLYQLADSLFSAGIALSWRNQKSDPAHKELIQQYFSSISLLRKLRIQQRSIVYFIKGLIKQFMNAQKP
>NZ_AP017308.1|WP_068380539.1|779636_780761_+|glycosyltransferase
MIPTVGIYRYTLLNSSETFVRNQAEALQSFTPYYLGMRQIQGLSTAESRTLIANSGGLFGRIKEYSTVLGIDAQFIQKVKAISPKLIHAHFGIDGAVALPIAKTLNLPLLVTFHGFDITIKDEFATRKLGQRLYWRRKEILKQEASGFIAVSKFIQQKLLDQNFPPDKIHVHYIGVNTQEFQPNPAIERESIVLFVGRLVEKKGCEFLIRAMAEVQKVLPEVKLVVIGEGSLRQSLETLAAKLLRSYTFLGSQPPEVVKSWMQKSKVFSVPSLTAQTGDAEGFGLVFAEAQATGLPVVSFASGGVPEAVAHEETGFLAIEQDNEKLAFYLLQLLSNEALWQKFSFQAQHRVQTLFNLATQTRKLEAIYQSAIAA
>NZ_AP017308.1|WP_068380547.1|780788_781721_+|glycosyltransferase-family-2-protein
MNPCVSVVIPTYNRPDLVKRAVKSALQQTLKEIEVIVVTDGPDPTTVTELSRIDDTRLRVLSLSKRRGAPVARNTGIEAAQGEWIALLDDDDEWMPEKLERQSKIAAASEHQFPIVSCHLLARTPRGDFVWPRRLPRSGESLGDYLFIRKSLFMGETLILTSTILAPKTLFEKVPFLVGLRKNQDADWLVKADKVPGVGVEFLPDTLAIWYREEKRVSTSTTNDWRHTFDWGKEVRPLLSPQAYAGFVLVSVGSDAYLQGDYRAFFPLLWSAFTLGRPTPAPLLFYLLNWMIPQPARRAVRTLLMKTRST

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Crispr_ID: NZ_AP017308_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017308_3

1544646-1544773

Orphan

Consensus_repeat	Method
TCTGCCCCTCGTAAATCTGCTCC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_AP017308_3

>merge|NZ_AP017308|3|1544646-1544773|CRISPRCasFinder
TTCGCCCCGCGTAAATCTGCCCCCCGTAAATCTGCTCCACTAAAATTTGCATTTCGTAAGTCTGCCCCACTCAAATTCGCATCGAGAATCATAGCGAGTGAAAGATCAGCCCCCCGTAAATCTGCTCC

>NZ_AP017308|3|3|1544646-1544773|CRISPRCasFinder
TTCGCCCCGCGTAAATCTGCCCC	CCGTAAATCTGCTCCACTAAAA
TTTGCATTTCGTAAGTCTGCCCC	ACTCAAATTCGCATCGAGAATCATAGCGAGTGAAAGA
TCAGCCCCCCGTAAATCTGCTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017308.1\|WP_068382182.1\|1538268_1539393_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_AP017308.1\|WP_068382192.1\|1543154_1544060_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_AP017308.1\|WP_068382201.1\|1547784_1548369_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_AP017308.1\|WP_068382197.1\|1546172_1546496_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|273926
NZ_AP017308.1\|WP_068382178.1\|1537215_1537344_-\|photosystem-II-reaction-center-protein-Ycf12	unknown	unknown	gnl\|CDD\|237469
NZ_AP017308.1\|WP_084761961.1\|1550870_1551152_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371647
NZ_AP017308.1\|WP_068392826.1\|1533146_1534220_-\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_AP017308.1\|WP_068382186.1\|1540397_1540814_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068382206.1\|1551968_1552328_+\|TMEM165/GDT1-family-protein	unknown	unknown	gnl\|CDD\|225030
NZ_AP017308.1\|WP_068382180.1\|1537567_1538272_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_AP017308.1\|WP_068382188.1\|1540806_1541022_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068382176.1\|1534549_1536016_-\|alpha-amylase	unknown	unknown	gnl\|CDD\|200485
NZ_AP017308.1\|WP_068382190.1\|1541275_1543081_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_AP017308.1\|WP_068382199.1\|1546652_1547708_+\|DUF3326-domain-containing-protein	unknown	unknown	gnl\|CDD\|371736
NZ_AP017308.1\|WP_068382196.1\|1545065_1546034_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068382184.1\|1539601_1540408_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_AP017308.1\|WP_068382210.1\|1552686_1553157_-\|DUF4149-domain-containing-protein	unknown	unknown	gnl\|CDD\|372664
NZ_AP017308.1\|WP_068382204.1\|1551558_1551909_+\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|223799
NZ_AP017308.1\|WP_068382202.1\|1548439_1550731_-\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|223989
NZ_AP017308.1\|WP_068382208.1\|1552331_1552628_+\|TMEM165/GDT1-family-protein	unknown	unknown	gnl\|CDD\|225030

Protein	Function_ID	Function_description	E-value
NZ_AP017308.1\|WP_068382182.1\|1538268_1539393_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.83178e-64
NZ_AP017308.1\|WP_068382192.1\|1543154_1544060_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	5.90848e-39
NZ_AP017308.1\|WP_068382201.1\|1547784_1548369_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.71296e-12
NZ_AP017308.1\|WP_068382197.1\|1546172_1546496_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|273926	TIGR02008, Ferredoxin_root_R-B1, ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.	5.45533e-27
NZ_AP017308.1\|WP_068382178.1\|1537215_1537344_-\|photosystem-II-reaction-center-protein-Ycf12	gnl\|CDD\|237469	PRK13686, PRK13686, photosystem II reaction center protein Ycf12.	5.82005e-08
NZ_AP017308.1\|WP_084761961.1\|1550870_1551152_-\|hypothetical-protein	gnl\|CDD\|371647	pfam11645, PDDEXK_5, PD-(D/E)XK endonuclease. This family of endonucleases includes a group I intron-encoded endonuclease. This family belongs to the PD-(D/E)XK superfamily.	7.16813e-10
NZ_AP017308.1\|WP_068392826.1\|1533146_1534220_-\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.9765e-76
NZ_AP017308.1\|WP_068382184.1\|1539601_1540408_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.7573e-22
NZ_AP017308.1\|WP_068382206.1\|1551968_1552328_+\|TMEM165/GDT1-family-protein	gnl\|CDD\|225030	COG2119, COG2119, Predicted membrane protein [Function unknown].	2.26514e-23
NZ_AP017308.1\|WP_068382176.1\|1534549_1536016_-\|alpha-amylase	gnl\|CDD\|200485	cd11347, AmyAc_1, Alpha amylase catalytic domain found in an uncharacterized protein family. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_AP017308.1\|WP_068382190.1\|1541275_1543081_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	4.34351e-55
NZ_AP017308.1\|WP_068382199.1\|1546652_1547708_+\|DUF3326-domain-containing-protein	gnl\|CDD\|371736	pfam11805, DUF3326, Protein of unknown function (DUF3326). This protein is functionally uncharacterized. It is about 300-500 amino acids in length. This family is found in plants and bacteria.	0
NZ_AP017308.1\|WP_068382180.1\|1537567_1538272_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	4.03636e-92
NZ_AP017308.1\|WP_068382210.1\|1552686_1553157_-\|DUF4149-domain-containing-protein	gnl\|CDD\|372664	pfam13664, DUF4149, Domain of unknown function (DUF4149).	0.00149635
NZ_AP017308.1\|WP_068382204.1\|1551558_1551909_+\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	1.82029e-12
NZ_AP017308.1\|WP_068382202.1\|1548439_1550731_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	1.33051e-58
NZ_AP017308.1\|WP_068382208.1\|1552331_1552628_+\|TMEM165/GDT1-family-protein	gnl\|CDD\|225030	COG2119, COG2119, Predicted membrane protein [Function unknown].	7.20331e-20

>NZ_AP017308.1|WP_068382192.1|1543154_1544060_+|M23-family-metallopeptidase
MTQPLLNATFALRVLLLSGLGSLIGFSEISRAQTPAAIDSIPQTPAAKITIPAGGDAFIDRTDYSLGATERIEPEKAIAKPVPAAPKSYAASDPVSVAPVEVAGFSLSSSGISWNTTAPANPIGSTYGTVQNYYNRTVRPIGRIGNGDLKLIFPLAIPAPITSMFGWRLHPISGDARLHTGTDIGAPLGTPVLAALTGRVIMADFFGGYGLSVALEHNAGAQQTLYAHLSELFVKPGEIVKQGSVIGRVGSTGNSTGPHLHFEVRQQTTEGWVAMDAGVVLETAMAELVKSMQVAQAPKTR
>NZ_AP017308.1|WP_068382190.1|1541275_1543081_+|TolC-family-protein
MKPSFELLALGVGVWLSVGTIGAASANPVPKSDEPDSSPPNMTNARSVATPLTLSAHRDTDGDPTPPFALTALQRPSALTPKPSAPDTIAQASPVSKPTAAKQTTAQGTPPSAPLPTTGSPTPSSTPAPSNPTGAPATPSAQPPTPLTPGTGGANQLVPVPPGLEPSSNRLQFPTRPGEVQVRNVQPISLQQALELAERNNRDLEVARLQVEQGRAAIREARASNFPTLALTANLSRSGNVFISQQPTLAQQFSGADPNSTSTAFSTGLQLNYSLFTSGLIQAQIRSVERQSRSQELQLEQTREQLRLDVSTNYYNLQNADSQVAIFEAAVRNAEASLRDARAQEAAGLGTRFATLQAEVNLANVQQQLRNAQANQEIARRQLVQTLSLSETATLTAADPVEPAGIWTIPLEDSIVLAYRNRAELEQQLVLREASQAQIQAARARNGVSLNLVGAYDFQRSGTTGTIANNSDSYSLALQARWNLFDGGATNAIISQRERDRDIAEARFAQNRNLVRFQVEQAYANLQANLANLNTTQQSVAQAQEALRLAALRFQAGVGTQTDRIAAEAALTQAQGNRISAIINYNLALAQLRRFVSNLSP
>NZ_AP017308.1|WP_068382188.1|1540806_1541022_-|hypothetical-protein
MVSEQQLLEKWRNLPTSQQEQVIEFLELLESQKTENSHAVPTIEIWSPYEGTEAAQVLLKLLENDPGEELA
>NZ_AP017308.1|WP_068382186.1|1540397_1540814_-|hypothetical-protein
MPEPASFSYIPPNATERQRSGLPYLPITLRYRGRAITANALLDTGAIVNVIPYELGIQLGIVWEEQIPAPQLAGNLAEAESRGVLITGLVQEFPPVRLGFVWTRNNSAPLILGQLNFFQEFQICFDGSNQVFTLISKH
>NZ_AP017308.1|WP_068382184.1|1539601_1540408_+|alpha/beta-hydrolase
MTRSTALSSLDGAPIKLGKVTLQVAHSPGTSPAIVFVHGGLGSRLNWCLQWEYFQSQGQEILTYDLAGHGQSGRYSRYSVGRHRRDLTRLIHHFKLHRPILCCHSYGVPVGLEWARRHAATALIAIGGGTHNLTPWWEIPLIKFFAIGGHHLYRWQFVQEFLRSLMVSNEAMAEFHDRNPVPSDAHPYEAIEAFWGYNAQHHPLKCPVTVITGGDDPMFPPAMGHEWLANLLHDQPQSHHITVPKVGHLVMAEAPEVVNQAISNWINV
>NZ_AP017308.1|WP_068382182.1|1538268_1539393_+|HAMP-domain-containing-histidine-kinase
MSKPSLRTRLFLSHMIVMVVGISTLLTVGKVYSPRLFLLHLEQLQGADFNMVRFKGRLVDGFESAWSRGAFWSVIVGGTTAIGLSYWVSKRIMQPLIQMEEITQRFASGHMEERVPENEIPELNRLAESFNRMAQDLEGVEQRRRDLVGDLTHELRTPLTVLEGYLEGLADGTIEPTPDIYQRLARETVRLRRLVNDLQELSKAEAGYLPIQLQPLQIRPLLVSIVEKFSDQLMDDSPTLKVDCPESLPSAMADSERVEQVLMNLVGNALRYTSEGSITLRAWTDSDKLWIAVEDTGQGIKAEDLPHVFERFWRSDRSRDRNSGGTGIGLAISRRLIELQKGSIGVASEFGKGSTFRFCLPLVPEKSKLLSLRE
>NZ_AP017308.1|WP_068382180.1|1537567_1538272_+|response-regulator-transcription-factor
MEILIVEDEAEIAQLIQLYLEKEGFSCRTCRDGISALQVFQDQKPDLIILDLMIPGLDGLEVCARVRQKPGAKDPFILMLTAKGEEIDRIIGLSTGADDYMVKPFSPKELVARVRALLRRTMRQGGQSQVYRTQNFVLDVDQRSASRQKGEQTEPLDLTTLEFDLLSTFMSYPGRVWNRTQLIDKLWGSNFFGDERVVDTHVARLRKKIEPDPANPTFVKTVIGVGYKFEDIAA
>NZ_AP017308.1|WP_068382178.1|1537215_1537344_-|photosystem-II-reaction-center-protein-Ycf12
MEFLSFLNDVNFEAIVQLTLIAMIMLAGPVVIFLLAFRGGDL
>NZ_AP017308.1|WP_068382176.1|1534549_1536016_-|alpha-amylase
MPTNPLLYQVNTRVWIQQLSKQFNRPATLDDIPDVALDEMVSLGFDWVYFLGVWQMGDAGRAVSLSNPEWVEEYKRLLVDLSDEDVCGSCFSITAYQVSDRMGGNSAAERLRDQLHDRGLKLMLDFVPNHMAPDHPWVQSHPDFFVHGTEELLTQQPQNYCRVGDTIFAYGRDPYFAGWCDTLQLNYGNSALQEAMIGELFNIAHLCDGVRCDMAMLILPEIFHNTWGIEVEPFWEIAIQKVRHQHPGFVFMAEVYWDMEWTLQQLGFDYTYDKRLYDRLLEQHADSVRKHFWADLNYQTRSARFLENHDESRAAGVFPVEVHRAAAILTFLCPGLRFLHQGQLEGFQHKISVHLQRGPAEQIDQELYKFYRQFLSCLQSPILRTGTWQLLNCNPAWDGNPTWTNLISFAWEDAAQNRILVIVNYAPHASQGYVTMLDRDLAGKLYSLKDRMSTTVYERSGDSLVSGLYFDLPAWSYHVFELQPQPPL
>NZ_AP017308.1|WP_068392826.1|1533146_1534220_-|response-regulator
MKILLIEDDYDTSQLLAATLTAQRYAVDAIAEGYSGLELAANWNYDLILLDVLLPKLSGIEVCRRLRRQGCQTPILMLTVKDSDEDIIAGLDAGADDYVAKSCAPAQLLARVRALLRRNENSASSPVLSWGELCLDPALVQVTYEQNIIPLRAKEYSLLELFLRHPHHILSRSSIIDHLWSIDETPVEGSVTNLIKDLRQRLKAAGIEGNIIETVYGLGYRLKPVPQTEISQAVETDILPANRRTQARSAIEKIADRFRVSLEQRIAVLEAAQRSLQTGSFTVQQRLTAQTEAHKLAGGLGTFGCAEASKTAHEIEQLLDQVSNQEQSVRQFSRLLEKLKQDLAEPHPVEVASTLQR
>NZ_AP017308.1|WP_068382196.1|1545065_1546034_-|hypothetical-protein
MSVIHQFEQDPNAVRIQKLLIYVCRNRWESDSTRLDVASWRSLIEEVREKYSTLELLRSRLAHQIGTLNKSAEYALIGQIVLSVFERIYAQEATTEITIPKLDQDVNVSRIKKLLIYTCRKYWEANSYIIEQTATSELLNELMEQYSTFEEVRSGLNIVVKTLNKPAEYAVVAEIILREVEPIYGTKNSQPVVEQIERVDLFNVRQEILKYANPLKAKILLFSSVYYLFEFCSQDWSNLKLYSLDGLLRTVLTQAETIEQFEQLLNEKASYLREPEGYLEVVPILVRSLKSNYTQLRQNLLASLKTSSVADRTQASSTKPAL
>NZ_AP017308.1|WP_068382197.1|1546172_1546496_+|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MANTYTVEISHQGQTHTIEVPEDRTILEVANDEKGLDLPVSCTAGVCTTCAALITEGTVDQADGMGVSTELQAQGYALLCVSYPRSNIKLVTEKEEEVYKQQFGKQG
>NZ_AP017308.1|WP_068382199.1|1546652_1547708_+|DUF3326-domain-containing-protein
MTRPYTVGLIIPTGIGAAIGGYAGDALPVARAIAQVADRLITHPNVLNGAQLYWNIPNALYVEGYGLDQFAAGHWGLLPERSNRIGIILDRGIEPDLQLRHLQVADAARATLGLSLTDYIVTDQPLNVELRTAKSGATWGTIKHPDSLLRAAEKLIKIGGADAIAVVARFPDDPDSEALQSYRHGQGVDHLAGAEAVISHLIVRSFKVPCAHAPALSPLPIDPNLSPRSAAEELGYTFLPCVLVGLSRAPRFTDVPNPHAIWADEVDALVIPASACGGSATLSLSQTNTRIIAVQENYTKIQVPPEALGIRSTIVKSYLEALGVLICDRAGINTASFSPEMASIQSQILGT
>NZ_AP017308.1|WP_068382201.1|1547784_1548369_+|CPBP-family-intramembrane-metalloprotease
MAEQIPDTPEMQPLTRIQVLIAMGVTAVVLLVISKVWLHFSTVPLLAVRFSTPALLQGIGLGIGISAASAIVYRVWGEYRKSADQYLAMVLKPLLLPDILWLGLLPGMSEELLFRGVMLPEVGLDFIGVLISSLCFGVLHMSNLKQWSYVVWASIVGIALGMSAVWTGNLLVPITAHVLTNLLSGLIWKFSDRT
>NZ_AP017308.1|WP_068382202.1|1548439_1550731_-|DEAD/DEAH-box-helicase-family-protein
MQMVQVEYAGEIRVNSGTNPRELYAHQNEAIKKLDEANKEAFKGLLVLPTGGGKTLTAVHWLLRNFIGRRKKVLWIAHRHELLDQAFETLKFSAYPSLLNDVGKFRYRVISGHPKHDRPVNIQPTDDIIIASKDSLNSGVHYLLDNWVEHSDSILLVVDEAHHATAKTYRKLINAIGQNFEARGKADSFKMLGLTATPFRTDDGEKGLLKMVFPNDILFSEHLRTLITRGILADPIFENLATELDFYQELTEKDIRAIEAFDKLPEKIAERIAKSKIRNRRIVDHYVQNRDKYKPLLVFAIDVQHAIELNGLFQQRGIKSDFVASKITDLNTGATVSVKENSEKIKRFRRGDLEVLINVEMLTEGTDLPNVQTVFLTRPTTSTILMTQMIGRALRGQSAGGTEKAYVVSFIDNWEDKINWVNPEKLISEGEFTDKKIETMKKIARLISIEKIEEFARMMDDSIDTTALEKLDFLRRVPVGIYRFSILEPSESGEPASRNYDVLLYNDTEEAYDSFVNDLEEVFQGVDVENREYLTDEELDYLLNLTKELYFPDHSFLLGYRDADVKNILRFYAQKQIEPEFIAFSERRKCNLSIVARHIYENDLTLKQVTEYLTSLWNDDKSFWQVLFGYNYLYFKKQVDIEINKLLGIYPDLTLMPPIVIPDDVPLETLSLEEMRERDPAEYRDIKDAVFAKYTDVKGFITCAASGFRSRMRRDFQIDHITPMAKGGLTTLENLQVLSRKAHTEKTRLENLENLNKVGCYTT
>NZ_AP017308.1|WP_084761961.1|1550870_1551152_-|hypothetical-protein
MPRHQMKSPSVKAGAFCIREIKEWTPNSEATLQSKQRFFMRSNEVFIHYGSEIHLVETEKRQRKPRSAKYRDAWMLMTKNPEIQIEDQGLADF
>NZ_AP017308.1|WP_068382204.1|1551558_1551909_+|YkgJ-family-cysteine-cluster-protein
MATWRCVKYCGACCNLDPSDRPDLEEYLNPEELHLYLSMVGEDGWCVNFNQMTRECNIYETRPRFCRVTPETFEKMFGVEPDELNDFAIDCCREQIEAVYGDRSLELLKFEREIGV
>NZ_AP017308.1|WP_068382206.1|1551968_1552328_+|TMEM165/GDT1-family-protein
MSSTNLPVTETQELLILEQTQPAKAKSNFLSVFGSTFITIFLAELGDKTQLATLLMSAQSHAPWTVFAGAASALVATSLVGVLVGRWLCQNVSPKTLEKATGGILLLVSVLLVLDVVRM
>NZ_AP017308.1|WP_068382208.1|1552331_1552628_+|TMEM165/GDT1-family-protein
MDWQLLGISFVTVFLAELGDKSQLAAIALSSDCRKSTKAIFLGSVTALILASLIGVVLGEGTAQLLPTKWTKIIAAIGFAILAVRLLWFRNDEEETIQ
>NZ_AP017308.1|WP_068382210.1|1552686_1553157_-|DUF4149-domain-containing-protein
MAIASRANFNSVNWHKRLVLVLAFWVSSSVLLDFVIMPSLFAAGMMTQPDFTAAGYGIFWVFNRLELLCAAFVLTAVLVRQQFEKSPISLSLAGILFTITIACTYFLSPQMSAIGLNLNLFEPAQIPTGMNQLHITYWILEAMKLVAGGWLIKREF

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Crispr_ID: NZ_AP017308_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017308_4

2221361-2222417

Orphan

Consensus_repeat	Method
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	PILER-CR
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	CRISPRCasFinder
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	CRT

14 spacers

The CRISPR arrays of NZ_AP017308_4

>merge|NZ_AP017308|4|2221361-2222417|PILER-CR,CRISPRCasFinder,CRT
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAACTGCATTCGAGCAGATGGGCAACGAATTCTTGAATTCTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAACCTAAGATACGTGAAATCTTGAACACACACTGTGTTACTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAACCGATGTCAATACTCTAGGCGGTTATCTCGCTAATTCTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAACCATTAATCGAACCGTCAACGGGTCTCGAAGGAATGACTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAACCTTTTAATGATGGTGACGGATTAGTTAGAAACGGAAACGTACTAAACTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAACCAATCGAATGAAAATTATTTTTCTTCAAGTTCGCTGCTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAACTTACTGGTTGTGTACATGTCAGATATGCGGCAAACTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAACATCGATTATTTCCTGATAACGTTGTTTACACTAGCACTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAACACTAGAGCAAAACTGGACAAGGCGAAACGAGATCTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAACATATGGGACGTTACCCCAATGACAACGGAGACTCAACTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAACCAGGGATGAATGAATCACTTTCGATTTCAGCGTTGACTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAACAGATTCTTCTGTCCCGTATTCGCAACCATAGAAACTCTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAACATAAAAATGCACCCGTTTGTCTTGAGAGTTGCGAAATTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAACTCTTGTTTGTATCCGATTCTTTGGAAGCTCGACTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC

>NZ_AP017308|4|1|2221361-2222417|PILER-CR
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	TGCATTCGAGCAGATGGGCAACGAATTCTTGAATT
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	CTAAGATACGTGAAATCTTGAACACACACTGTGTTA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	CGATGTCAATACTCTAGGCGGTTATCTCGCTAATT
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	CATTAATCGAACCGTCAACGGGTCTCGAAGGAATGA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	CTTTTAATGATGGTGACGGATTAGTTAGAAACGGAAACGTACTAAA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	CAATCGAATGAAAATTATTTTTCTTCAAGTTCGCTG
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	TTACTGGTTGTGTACATGTCAGATATGCGGCAAA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	ATCGATTATTTCCTGATAACGTTGTTTACACTAGCA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	ACTAGAGCAAAACTGGACAAGGCGAAACGAGAT
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	ATATGGGACGTTACCCCAATGACAACGGAGACTCAA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	CAGGGATGAATGAATCACTTTCGATTTCAGCGTTGA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	AGATTCTTCTGTCCCGTATTCGCAACCATAGAAACT
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	ATAAAAATGCACCCGTTTGTCTTGAGAGTTGCGAA
ATTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	TCTTGTTTGTATCCGATTCTTTGGAAGCTCGA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC

>NZ_AP017308|4|4|2221361-2222417|CRISPRCasFinder
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	TGCATTCGAGCAGATGGGCAACGAATTCTTGAATT
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	CTAAGATACGTGAAATCTTGAACACACACTGTGTTA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	CGATGTCAATACTCTAGGCGGTTATCTCGCTAATT
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	CATTAATCGAACCGTCAACGGGTCTCGAAGGAATGA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	CTTTTAATGATGGTGACGGATTAGTTAGAAACGGAAACGTACTAAA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	CAATCGAATGAAAATTATTTTTCTTCAAGTTCGCTG
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	TTACTGGTTGTGTACATGTCAGATATGCGGCAAA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	ATCGATTATTTCCTGATAACGTTGTTTACACTAGCA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	ACTAGAGCAAAACTGGACAAGGCGAAACGAGAT
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	ATATGGGACGTTACCCCAATGACAACGGAGACTCAA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	CAGGGATGAATGAATCACTTTCGATTTCAGCGTTGA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	AGATTCTTCTGTCCCGTATTCGCAACCATAGAAACT
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	ATAAAAATGCACCCGTTTGTCTTGAGAGTTGCGAA
ATTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	TCTTGTTTGTATCCGATTCTTTGGAAGCTCGA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC

>NZ_AP017308|4|1|2221361-2222417|CRT
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	TGCATTCGAGCAGATGGGCAACGAATTCTTGAATT
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	CTAAGATACGTGAAATCTTGAACACACACTGTGTTA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	CGATGTCAATACTCTAGGCGGTTATCTCGCTAATT
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	CATTAATCGAACCGTCAACGGGTCTCGAAGGAATGA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	CTTTTAATGATGGTGACGGATTAGTTAGAAACGGAAACGTACTAAA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	CAATCGAATGAAAATTATTTTTCTTCAAGTTCGCTG
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	TTACTGGTTGTGTACATGTCAGATATGCGGCAAA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	ATCGATTATTTCCTGATAACGTTGTTTACACTAGCA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	ACTAGAGCAAAACTGGACAAGGCGAAACGAGAT
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	ATATGGGACGTTACCCCAATGACAACGGAGACTCAA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	CAGGGATGAATGAATCACTTTCGATTTCAGCGTTGA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	AGATTCTTCTGTCCCGTATTCGCAACCATAGAAACT
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	ATAAAAATGCACCCGTTTGTCTTGAGAGTTGCGAA
ATTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	TCTTGTTTGTATCCGATTCTTTGGAAGCTCGA
CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017308.1\|WP_068383000.1\|2230806_2232744_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_AP017308.1\|WP_068382970.1\|2212883_2214362_+\|alpha-amylase	unknown	unknown	gnl\|CDD\|236518
NZ_AP017308.1\|WP_068382969.1\|2210522_2212667_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|349772
NZ_AP017308.1\|WP_068382982.1\|2220573_2221137_+\|DUF1802-family-protein	unknown	unknown	gnl\|CDD\|370138
NZ_AP017308.1\|WP_068382974.1\|2216383_2217346_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320684
NZ_AP017308.1\|WP_068382979.1\|2219101_2220034_+\|isopenicillin-N-synthase-family-oxygenase	unknown	unknown	gnl\|CDD\|226022
NZ_AP017308.1\|WP_068382991.1\|2225712_2227824_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_AP017308.1\|WP_068382993.1\|2228036_2228582_+\|RNA-2'-phosphotransferase	unknown	unknown	gnl\|CDD\|179136
NZ_AP017308.1\|WP_068382977.1\|2218252_2219080_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_AP017308.1\|WP_068382980.1\|2220229_2220577_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068382989.1\|2225146_2225521_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068382972.1\|2214414_2216307_-\|iron-uptake-porin	unknown	unknown	gnl\|CDD\|335962
NZ_AP017308.1\|WP_068382995.1\|2228573_2229698_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_AP017308.1\|WP_068383002.1\|2232746_2234036_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|235136
NZ_AP017308.1\|WP_068382997.1\|2229703_2230810_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_AP017308.1\|WP_068382968.1\|2208283_2210419_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224512
NZ_AP017308.1\|WP_068382975.1\|2217468_2218164_-\|type-1-glutamine-amidotransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|153235
NZ_AP017308.1\|WP_068382985.1\|2223622_2224543_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237771
NZ_AP017308.1\|WP_068382987.1\|2224758_2225154_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|366837
NZ_AP017308.1\|WP_068382984.1\|2222756_2223626_+\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493

Protein	Function_ID	Function_description	E-value
NZ_AP017308.1\|WP_068383000.1\|2230806_2232744_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	7.35084e-87
NZ_AP017308.1\|WP_068382970.1\|2212883_2214362_+\|alpha-amylase	gnl\|CDD\|236518	PRK09441, PRK09441, cytoplasmic alpha-amylase; Reviewed.	0
NZ_AP017308.1\|WP_068382969.1\|2210522_2212667_+\|AAA-family-ATPase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	1.0759e-56
NZ_AP017308.1\|WP_068382982.1\|2220573_2221137_+\|DUF1802-family-protein	gnl\|CDD\|370138	pfam08819, DUF1802, Domain of unknown function (DUF1802). The function of this family is unknown. This region is found associated with a pfam04471 suggesting they could be part of a restriction modification system..	6.1021e-81
NZ_AP017308.1\|WP_068382974.1\|2216383_2217346_-\|M48-family-metallopeptidase	gnl\|CDD\|320684	cd07325, M48_Ste24p_like, M48 Ste24 endopeptidase-like, integral membrane metallopeptidase. This family contains peptidase M48 family Ste24p-like proteins that are as yet uncharacterized, but probably function as intracellular, membrane-associated zinc metalloproteases; they all contain the HEXXH Zn-binding motif, which is critical for Ste24p activity. They likely remove the C-terminal three residues of farnesylated proteins proteolytically and are possibly associated with the endoplasmic reticulum and golgi. Some members also contain ankyrin domains which occur in very diverse families of proteins and mediate protein-protein interactions.	8.7438e-60
NZ_AP017308.1\|WP_068382979.1\|2219101_2220034_+\|isopenicillin-N-synthase-family-oxygenase	gnl\|CDD\|226022	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only].	1.39616e-64
NZ_AP017308.1\|WP_068382991.1\|2225712_2227824_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	6.47415e-22
NZ_AP017308.1\|WP_068382993.1\|2228036_2228582_+\|RNA-2'-phosphotransferase	gnl\|CDD\|179136	PRK00819, PRK00819, RNA 2'-phosphotransferase; Reviewed.	1.57828e-89
NZ_AP017308.1\|WP_068382977.1\|2218252_2219080_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.05682e-43
NZ_AP017308.1\|WP_068382995.1\|2228573_2229698_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.03465e-26
NZ_AP017308.1\|WP_068382972.1\|2214414_2216307_-\|iron-uptake-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	3.15967e-23
NZ_AP017308.1\|WP_068382997.1\|2229703_2230810_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.74894e-26
NZ_AP017308.1\|WP_068383002.1\|2232746_2234036_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	3.55308e-33
NZ_AP017308.1\|WP_068382968.1\|2208283_2210419_+\|hypothetical-protein	gnl\|CDD\|224512	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis].	6.16195e-27
NZ_AP017308.1\|WP_068382975.1\|2217468_2218164_-\|type-1-glutamine-amidotransferase-domain-containing-protein	gnl\|CDD\|153235	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers.	1.15157e-100
NZ_AP017308.1\|WP_068382985.1\|2223622_2224543_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|237771	PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional.	9.39961e-178
NZ_AP017308.1\|WP_068382987.1\|2224758_2225154_-\|HNH-endonuclease	gnl\|CDD\|366837	pfam01844, HNH, HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	1.45876e-10
NZ_AP017308.1\|WP_068382984.1\|2222756_2223626_+\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0

>NZ_AP017308.1|WP_068382982.1|2220573_2221137_+|DUF1802-family-protein
MKQALKEWSIAVQALEQGESILLLRKGGIQEEKGRFEVPFRQVLLYPTFEHQDPNLLKQPNLVERVESGWHPEAIDISSYAEITDVLQVSEPDVVRSLIPFHIWNDRFVEERLKWKPRSPLYLLLLKVFRLPQTQTIPYRESYGGCRSWIEIDEISIENAIPVLTEAEYQERVRQIREIALEGSIVR
>NZ_AP017308.1|WP_068382980.1|2220229_2220577_+|hypothetical-protein
MNNFSFDELQKKDLLTALGLWLVVEAVSFVLFPTIGLINPGARLRTWFLLSVPFGLGGAALLSMSSRFVATAGERGQRKMASFIGQFGGWIGLAGIMFPFLVVCIEFFSTLDLQR
>NZ_AP017308.1|WP_068382979.1|2219101_2220034_+|isopenicillin-N-synthase-family-oxygenase
MELSFMQQTIPIADLQSFLSDDPVQQQDFVLTIGKALEEIGFFALVNHGVDRALIQRAYQLAEEFFELPDEAKLRYEDPKLNGQRGFTRFGKEHAKDHPVPDLKEFWHVGRENHLANLDPIEVPEFHATMNQLYAQLEQCAVKLLEACALYLGEERSCLSETTIDADTILRIIHYPPIPEDVNPASLRSAPHEDINLITLLCEATESGLELLQRDGTWRAIPNVEGQSIVDSGDMLQQLTNGLLKSTTHRVVNPGDRSRRFSMPFFVHPVGKTDLTPLQSCINKTGGVTRFPKITAGEYLHQRLTEIGLK
>NZ_AP017308.1|WP_068382977.1|2218252_2219080_+|LysR-family-transcriptional-regulator
MVNLEWYRSFVAVYRVGTVSGAAESLYLTQPAVSQHIAALEAMLKVTLFQRMPRRMLPTEAGKRLYTRVVNAIETLESVSTLTETSPLIRLGTPTEFFSEYLLKRFDQGVNFTVQFGLVQDLIERLLADQIDCAIATQKIAHSAIEYHPLYEESFWLVAPPGMEIEQSEQWLRQQTWIAYGEDLPIIRRFWRVVFGQRLEVNPQFVFPDLRTIRDAVSQGLGLSVLPDYLCADWIEQDRLMLVLKPEKAVTNQIWFAYRKSERRSQSVQFFIDRF
>NZ_AP017308.1|WP_068382975.1|2217468_2218164_-|type-1-glutamine-amidotransferase-domain-containing-protein
MSKKILIVLTSHATLGNTGKETGFYLPEVSHPVAVFDRANFTIEYVSPKGGKAPMIGIDLTDPLNQAFVENPEKMAQVENTLRPEQVNPTEYDALFYAGGHGTMWDFPNTPELDRIAETIYDRGGVVGAVCHGPAGLVNLKLNGKYLVDGKTVAAFTNEEEAAVELTEVVPFLLESTLIERGATVEKAANFQEKVVVSDRLVTGQNPASATGVAKAMVELLTPASETLATV
>NZ_AP017308.1|WP_068382974.1|2216383_2217346_-|M48-family-metallopeptidase
MPNYPGISSEAFRHPLDRQAEQALRSVPGFDLVARKFVEFVYERPRYIYLMGNTIQVGVRQFSSVYQIFRECLQCLDISPEPALFVSQAPSVNAYALGQEKPCVVLNSALLDLLSESELRSVIAHELGHLKCGHTTLTQMAMWANFAIAGLADLTFGLSSFISTGLMLAFYEWLRKAELSADRASLLVMDQLNPTLQGMMRLAGGSLKYAHEMSLEELIKQSDRYQELDNDQLNQLYKFSLYNDVSNGVFLSHPFTIERIRFLQEWSASSEFQNIRRGNYVRVGAEGAIHVDPQNEEADSLKRQIEELQREIERMKRSQP
>NZ_AP017308.1|WP_068382972.1|2214414_2216307_-|iron-uptake-porin
MLSPSRYWKLWLAAPAVLLWMQSAQASETRQNSEIQTTSIASQVKDFTSEVSEPPLKIKSDVKETTPNFDQVNNVAALESTEAPPGMEQVTSVSQFSDVRPTDWAFQALQSLVERYGCIAGYPDRTYRGNRALTRFEFAAGLNACLDRINELIAAATSDLVKKEDLATLQKLQEQFATELATIRGRVDALEARTTTLERQQFSTTTKLSGNAYFNITNASAGRDVLFEGVPGSAADARFAGARTAAGTPIASVAPDPQTTLSFLTWLTLNTSFTGRDSLVTQLAAGNGISPYNQYASAGFFNASGVPFLDQTAGTVNGQSDIVIRDFFYSFPLGEAIKVTVGPRINWYRHFDGNRFLNIFASGASFDTSNSTQSNTIDRGSGAVVEVQLSRQFRLALGYLGESTEFLPAQFGFNTSSNPRFGLFGGTNTASAELTFSPSDNFNLRLQYNYSRIQAYGGQVGGAIGEPIPYGYLDAGVPGASVLDPVTGAVSSGGLRYAYANMFGVNFDWLITPGIGLFGRYSFANTRLNPVNGRVDTQSFQVGAAFPDLGKKGAQATIAFVMPMDITRGRRFFASGGGDGGTQYELEASYFFPISDKIAIVPTFYAIFNPNNFDANPTVYVGNIRTQFSF
>NZ_AP017308.1|WP_068382970.1|2212883_2214362_+|alpha-amylase
MSEPNGVMMQYFHWYLPSDGTFWNELAEKSEELAQAGITSLWLPPAYKGVGGGYEVGYGVYDMYDLGEFDQKGSVRTKYGTKDEYIKAVKAAQAAGMRVYADVVFNHRMGADQEEVVEATPLSQDNREEVIGEYKPVKAWTHFTFPGRDGKYSKMEWHWWHFDAIDYNEYEKQQQAVYLLKGKEFDDNVDLEKGNFDFLMGCDLDMSHPEVCEELKRWGEWYYDTTGVDGFRFDAAKHVTAPFFHDWLEHMRNYGQRELFSVAEYWSYEVEALHYFIEATQGKVAVFDAPLHYNFHVASRAGNSYDMRQIFDNTIVQQQPCLAVTMVDNHDSQPLQSLESPVESWFKPLAYALILLRCEGYPCIFHPDYYGACYRDYGGDGNEHEIWLDSHRWLIDKFLYARRDYAYGDQYNYFDHPNVVGWTRLGDEAHPGGMAVVLSNGEGGSKWMEVGQCDRTYIDITEHVKEPVTTNEHGWGEFRCNGGSVSVWVPQN
>NZ_AP017308.1|WP_068382969.1|2210522_2212667_+|AAA-family-ATPase
MTNQINSTISPAAKNGKVPHPPEYVLTLDAGEFEEDSGKLLKTLRRRVALIAGVTAASTAATWAITWNQPSTYEGSFLLLVEPVSIQTQQDRDPLGPTTAKPTEDSMSYETQIAVLQSSKLLQPIVEQISKRYPDIANEDLSSNLKISRPQDTKMISVTYQHSDPDRVKFVLDKFAEGYLKYSQRERETNLSYGIAFVDRQIEDTRRRVDTLQRQLQSFRQQNNFIAPESLAGQVTNQVQSVSQQKFENDKELAAAQRQIGSLQDSNGVRAALAADGAYQGVLNKVRELESKIATESTRFQSDTDEMRALRQQRDSLVPVLRQEAQRVLGNQMAKIGTDLSLLETRRQVLNRADAYWNGEMQRLPVLTRIYTDLDRERTVATESLTRLLGTRENLQVQAAQKDIPWQLVTPPSRPGQPKDSPQRNIILGALAGLLLGIGLAILADRCDRRIRSVSDIKKISKLPVLGTIPSETAVPRLTMPAVLRASEDRTSTDFAQDGAFTEAFRSLYTNLLLLNTDHPLRSIVVSSPTAGDGKTTVAVNLAQAAAAMGQRVLLVDADLRNPQLAERLEVPNDRGLTELVAQNLNPQEVIQRLEAMVTVGGGDEPSLGRTNFSILTGGKMPLDPTRLWSSQKIQRLNDYFKAMYDLVVFDAPPALSYADSSLLAPHTNGMLVVTGIGKTDQGDLRQMLDTLQTARIPVVGIVANRNGSDLSEG
>NZ_AP017308.1|WP_068382968.1|2208283_2210419_+|hypothetical-protein
MKLKLSPTRVSFLALGAFAAVVAQELARSDAKAPSATPPTSNTPKANRTQPTAAPLPSSIALSQPESLFSSAASLPTVPNPSGVTKAPVISQSITPPPPPKVAATPPSLRVVDVDQLPIDSIINETLKLPPPPPKVAIASVPTATTPTAPKSTATNPAAVQDIQGHRAEASIQALMQQGIMLGFGDGTFRPNAPMTDAQFQGIVKKVASRSSTLATLKRPKDIVTRADAATYIHRQLLRTNALSTPQAPTKVASAALPTVAPSNPAPVVNPSAPSRPLSPATPPTPETFTFSSADVDAADSDSYTLGAGDKIRVDILNVPEYSKEYQVLVNGTVNLQRAGSLFITGMTTRQAQDAIAAKYRRLLRDPVIDVSLLSARPLNVAIAGEVGKPGTYTLTFGEGGKFPTVTRLIREAGGMNLAADARQVVVRRPQRAGADQEIRLNMWELFSTGNIRQDLTLRDGDSVFIPAATSVNLAEVTQRKDANFSVAAQPVNVAIVGEVARPGPYTIKDPVPTLSGAIREAGGIKQLANLKEVKVRRNTRTGTPQTINVDLWQLLRSGDLNQDLVLQQGDTIEIPTALALNPEEARQLGDASFAPSSVKITVVGEVSKPGQIDVPMNTPLNQALLTAGGFTRQANRRRVELVRLNPNGTVTRRDVSVDLSRGVDESGNPLLQNGDVLVVDRNGLAKTGDTIQNVLGPVFQILPFRFLFGL
>NZ_AP017308.1|WP_068382984.1|2222756_2223626_+|lipoyl-synthase
MVVKPDWLRVKAPQWERVGNVKEVLRDLALNTVCEEASCPNIGECFSNGTATFLIMGPACTRACPYCDIDFEKKPQPLDPTEPTRLAEAVRRMRLNHVVVTSVNRDDLPDGGASQFVRCIEEIRAVSPKTTIEVLIPDLCGNWDALKIILSASPEVLNHNTETIPRLYRRVRPQGDYARSLELLKQVRQINPKVYTKSGIMVGLGETDAEVRQTMQDLRAADCDILTIGQYLQPTQKHLGVQDFVTPEQFDAWREFGESIDFLQVISSPLTRSSYHAEQVQALMQLYPR
>NZ_AP017308.1|WP_068382985.1|2223622_2224543_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MRIAVIGAGAWGSTLAGLAQENGHEVSVWSRRSERSLNDTISDSELLISAVSMKGVRSVIEQLSITVPTIVTATKGLDPESGNETALPLLPSQVWQAAFPESSIAVLSGPNLSKEIQQGLPAASVVAHSDQTIADRIQQAFSSARFRVYTNADPLGVELGGTLKNVIAIAVGACDGLQLGTNAKSALVTRGLAEMIRLGTHWGAKPETFYGLSGLGDLLATCSSSLSRNYQVGYGLAQGKTLSEVLATLEGTAEGINTTQVLVKLAQAQGISMPISVQVDRLLRGEITPRSAVGELMQRDSKPESI
>NZ_AP017308.1|WP_068382987.1|2224758_2225154_-|HNH-endonuclease
MSEYVPVALKQLVFDRAREMCEYCRSPAKYAIDPLVIDHIHPVSRGGQTISDNLALSCQTCNNCKYNKIEAPDPATEQVAPLFHPRQMNWNQHFIWNEDATQMLGITPTGRATVTLFQTKAICECYRSFTP
>NZ_AP017308.1|WP_068382989.1|2225146_2225521_-|hypothetical-protein
MSLDELIQAANQLDEADLDTLLQQVVVLRVHRKANTLPKKEAELLEKINQGIDPKLRAQYQALRTKREAETLTDAEYKTLIQLSSHIEQIGAQRLEALANLAQLRQVSVTELMETLGIQPVSYV
>NZ_AP017308.1|WP_068382991.1|2225712_2227824_+|tetratricopeptide-repeat-protein
MLKKNQSVFAFLLGGFLVCSAPISVVQAQQTPQQELTELKQQQQLRSQVEDEIDRALSRSSLLLNIALITLTVFPIALLVALWKFRRVIIREIVDRGLQQLQHLSEVEHQLQDVQQEAERRIQQSREVIDQLEREVQALQKRISEDAESLTGLTSQLSRSQSELLAGLETQVNLSKRELEKLSSDFVVHLSMLQTDAQEQTTIAADRFNEVRDRLMAQLDGIEAFATEQQHLTQEHLTRSQSAFTTHLDELQSDVQLQRDQMLQRLAQFEQDYMTQVSEVQTDTEDRRNQLLEDLRHLKAEFATQLAGFQTDSQQQRDRIREQIEQLEAELSETTTEIRSNLEQRQKRVEEDLDQKETEVRSQLEHHQQRVQANLDQKETEVRSQLEQHQKQAQDDLNQRQSEVLAQFSELETTAIQGRTNFLDKLRLLESDAGQQKQAIFNKLQQLEFEFVSQLSGLREQAQNRRPEPVGAPEQSSDFEQAETLFKSGQFEDAIAHYDRAIEHRSNNPELWLRRGLALGRLKQFKEAIASYDRAIQLDPDYSEAWCDRGVALGKLQRHEEAFRSFNQAVQIRPSDSIAWLNRGLALQMLGRYSEALASFDEALKLDSEAYKVWNYRGYLLVQLERDRDALESFDFAIDIQPKYAPAYYNKAICYALQGHTQAAIENLEEAIRINPRYRDDAKNDPEFEQIMNDRRFRQLVEH
>NZ_AP017308.1|WP_068382993.1|2228036_2228582_+|RNA-2'-phosphotransferase
MEKDRSTKISRYLSKHLRHNPERLGLSLAPGGWVSVDELLTACATYQFPVTRIELEEVVATCNKQRFSFDQTRTRIRANQGHSVEVDLQLEPQAPPDVLYHGTGELSVPAILESGLLKMSRHHVHLSIETETARKVGMRHGRPAILAVDSAAMHQAGFIFYCSDNGVWLVDHVPANYLALI
>NZ_AP017308.1|WP_068382995.1|2228573_2229698_-|ABC-transporter-permease
MNIFRRLLESRFFVLAVKEISQILRNKQLIFLLVFPPTVQLLIFGFALSPSVDHLKLGVMDYSNTPMSRELTAALTANRVFDVKSMSIDESDLSNQVRRGDITAGLIIPTDFNRSLRSENNPAEVQVLIDAVDANTAGIASGYATQIINQFGQRFTPEVTPPIQTEATILYNPGLVSSWFIVPGVIGLVLNLGSSLVSTAAVVREKDTGTLEQLLMTPAAEWEIILAKVVPLFVLLLGEVMLALSVAHFIFQVPFRGSLPMFLFFSGLYACVGIGVGFLLATISKTQQQAILTSFFINLPLIQLSGAIAPVESMPKFFQILSLANPLRHYVKIARGVLLKGNGLDVLYPEAIALFCFAIALLYISTSKFRSQLN
>NZ_AP017308.1|WP_068382997.1|2229703_2230810_-|ABC-transporter-permease
MKRILAQCKKELAQFRRDRLTLALAFILPLMTLFIFGFAIRLEAKNITLIVQDFDRSNLSQSYTERLYATNQFTPVQWNGLDPVKDGLDRGITKAAVIIPPKFNADVIAGRTSTVQVLIDGTDVNNARVIKNSLQAFTTVFVRDQNLAQSQPKITPHIRLWFNPGRQESLYIVPGVFGLILAIYPSLLAALAMSREKEQGTILQTYASSISAAELLLGKCLAYFVVAMGQAFVVIGLGCIVWRLGFAGDPTPLLIGGALFLLASVMFGLFIGVRANNRSVAVQGVATAGFLLALLLSGFIYPLSNIPFPLSLISNIVPARYFIELSRDAFVRGTGWSGVWIAPVMLLVLTFALFNLSRRILGRMQLPG
>NZ_AP017308.1|WP_068383000.1|2230806_2232744_-|ABC-transporter-ATP-binding-protein
MTSAIELSPNVARDAANSVIQVRQLHKHYGRLAAVRGIDFDVAPGELFGLIGPDGAGKTTTFHILGGIMEATAGEVRVLNLPARDARLQIGYLTQQFSLYLDLSIDENLQYVAGLREVPDQLFQQRRAKYLKLMSLNQFGDRLAAQLSGGMKQKLALCCALVSQPKVLLLDEPTTGVDPVSRREFWDVLAALAAEGVTIVVATPYLDEAERCNRVALMYDGAIQQIGTPAQLRQSLGLHRLEVHTPQLAIAEQALSGSDGIADVQTFGDRLDVLVADSDEGEREIRGRFRDRQLTLTSIHNAEPTLENVFVTRLRQQGSAPQVLEFPRGRSGRKSAQDIAIYAHHLDRVFGTFQAVKNVNVEVRYGEIFGLLGANGAGKTTTIKMLCGLLPASSGEISLGGERGNLRSSELRKRIGYMSQKFTLYDDLSIGQNLEFYSGVYGVPRKIRREKIDWVLATCELEGQENMLTGQLPGGWKQRVAFGASVMHEPDILFLDEPTSGVDPLARRQFWRLINDFARNGTAILVTTHYLEEAEQCNRMSFMVAGETVLEGSPSQIKAAQPGQLIEVVIDQTQAASNLLKQQMESWRVSIFADRLHVVIDQPEEIEELRSRLTAANLSPHSLLPIPYSLEDAFIGVVQRAQNKL
>NZ_AP017308.1|WP_068383002.1|2232746_2234036_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MTQTLPQPADHGSAPAAKPGRSKKLLIIPGLIAIAGIGFATWRFLPRPEATTLPLSGRIEADETDIGAKTAGRVTAVKFREGDEVQKDQVVAELTDEEVNEQLRAAAAQVSAARQEEQQARLDIAVAESKIQEAQLNLQQSQGDARGRIDQASSTVAAAKAQLAQANANVKEAEAQVKEARSKANLAIRDRDRFAQLVSQGAINQQQFDQAQTNVETAQAAVDTANATLQARREAVNAATQQLNAAAGGLTQTETTGLNPDIRGAQLTGLEQQRDQARSRLIAAQAKVKNALANQQQIQKRLDSFVVKSPIHGVVTARPIEPGAVVATGKTLLTVIDLNTVYLRGFIPQGDIGKIRVGQRAQVFLDSDPKKPLSARVAAIDPKASFTPENIYFRDDRVKQVFGVKITIDDPGGFAKPGMPADGEIMLKE

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Crispr_ID: NZ_AP017308_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017308_5

2276712-2276905

Orphan

Consensus_repeat	Method
CGATCGGACGATTCCCATCGACT	CRISPRCasFinder
CGATCGGACGATTCCCATCGA	PILER-CR

3 spacers

The CRISPR arrays of NZ_AP017308_5

>merge|NZ_AP017308|5|2276712-2276905|CRISPRCasFinder,PILER-CR
TGATCGGACGATTGCCATCAATGCCTAGAGATTTGTTTGCTTCTAATGTATCCGCAGCGATCGGACGACTGCCATCGACTTCGATCGTGCCTCGCACCTCCATCTCATCGGCTACGATCGGACGATTCCCATCGACTTGTAAAAAAGACTGCACTTGAAGATCGCTTTCATCGATCGGACGATTCCCATCGATC

>NZ_AP017308|5|5|2276712-2276905|CRISPRCasFinder
TGATCGGACGATTGCCATCAATG	CCTAGAGATTTGTTTGCTTCTAATGTATCCGCAG
CGATCGGACGACTGCCATCGACT	TCGATCGTGCCTCGCACCTCCATCTCATCGGCTA
CGATCGGACGATTCCCATCGACT	TGTAAAAAAGACTGCACTTGAAGATCGCTTTCAT
CGATCGGACGATTCCCATCGATC

>NZ_AP017308|5|2|2276713-2276903|PILER-CR
GATCGGACGATTGCCATCAAT	GCCTAGAGATTTGTTTGCTTCTAATGTATCCGCAGC
GATCGGACGACTGCCATCGAC	TTCGATCGTGCCTCGCACCTCCATCTCATCGGCTAC
GATCGGACGATTCCCATCGAC	TTGTAAAAAAGACTGCACTTGAAGATCGCTTTCATC
GATCGGACGATTCCCATCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017308.1\|WP_068383085.1\|2277893_2279351_+\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|214349
NZ_AP017308.1\|WP_068383092.1\|2281321_2281564_+\|DUF4926-domain-containing-protein	unknown	unknown	gnl\|CDD\|379816
NZ_AP017308.1\|WP_068383064.1\|2269728_2270445_+\|ribonuclease-III	unknown	unknown	gnl\|CDD\|223644
NZ_AP017308.1\|WP_068383096.1\|2282279_2283740_-\|PP2C-family-protein-serine/threonine-phosphatase	unknown	unknown	gnl\|CDD\|225118
NZ_AP017308.1\|WP_068383077.1\|2276098_2276446_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|170217
NZ_AP017308.1\|WP_068383062.1\|2269060_2269669_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068383066.1\|2270483_2271467_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_AP017308.1\|WP_068383060.1\|2267626_2268319_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068383087.1\|2279412_2279823_+\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|214351
NZ_AP017308.1\|WP_068383069.1\|2271535_2271967_+\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
NZ_AP017308.1\|WP_068383098.1\|2284056_2284731_-\|DUF559-domain-containing-protein	unknown	unknown	gnl\|CDD\|238509
NZ_AP017308.1\|WP_068383081.1\|2277107_2277380_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_071837111.1\|2273474_2274197_-\|transposase	unknown	unknown	gnl\|CDD\|376573
NZ_AP017308.1\|WP_068383071.1\|2271950_2272619_+\|urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900
NZ_AP017308.1\|WP_068383075.1\|2272887_2273280_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350312
NZ_AP017308.1\|WP_068383083.1\|2277376_2277742_+\|clan-AA-aspartic-protease	unknown	unknown	gnl\|CDD\|163410
NZ_AP017308.1\|WP_068383073.1\|2272647_2272887_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378366
NZ_AP017308.1\|WP_068383090.1\|2280973_2281309_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068383094.1\|2281728_2281965_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_AP017308.1\|WP_068383088.1\|2279976_2280609_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP017308.1\|WP_068383085.1\|2277893_2279351_+\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|214349	CHL00060, atpB, ATP synthase CF1 beta subunit.	0
NZ_AP017308.1\|WP_068383064.1\|2269728_2270445_+\|ribonuclease-III	gnl\|CDD\|223644	COG0571, Rnc, dsRNA-specific ribonuclease [Transcription].	3.62366e-68
NZ_AP017308.1\|WP_068383096.1\|2282279_2283740_-\|PP2C-family-protein-serine/threonine-phosphatase	gnl\|CDD\|225118	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription].	2.8319e-88
NZ_AP017308.1\|WP_068383077.1\|2276098_2276446_+\|hypothetical-protein	gnl\|CDD\|170217	PRK10039, PRK10039, hypothetical protein; Provisional.	3.71243e-22
NZ_AP017308.1\|WP_068383098.1\|2284056_2284731_-\|DUF559-domain-containing-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	1.80757e-10
NZ_AP017308.1\|WP_068383066.1\|2270483_2271467_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.72918e-53
NZ_AP017308.1\|WP_068383087.1\|2279412_2279823_+\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|214351	CHL00063, atpE, ATP synthase CF1 epsilon subunit.	4.47189e-65
NZ_AP017308.1\|WP_068383069.1\|2271535_2271967_+\|urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	1.41273e-47
NZ_AP017308.1\|WP_071837111.1\|2273474_2274197_-\|transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	9.60879e-05
NZ_AP017308.1\|WP_068383071.1\|2271950_2272619_+\|urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	5.54895e-74
NZ_AP017308.1\|WP_068383075.1\|2272887_2273280_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350312	cd18745, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.36131e-60
NZ_AP017308.1\|WP_068383083.1\|2277376_2277742_+\|clan-AA-aspartic-protease	gnl\|CDD\|163410	TIGR03698, clan_AA_DTGF, clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	6.19723e-17
NZ_AP017308.1\|WP_068383073.1\|2272647_2272887_+\|hypothetical-protein	gnl\|CDD\|378366	pfam10047, DUF2281, Protein of unknown function (DUF2281). Members of this family of hypothetical bacterial proteins have no known function.	0.00176611
NZ_AP017308.1\|WP_068383094.1\|2281728_2281965_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	9.13714e-07
NZ_AP017308.1\|WP_068383092.1\|2281321_2281564_+\|DUF4926-domain-containing-protein	gnl\|CDD\|379816	pfam16277, DUF4926, Domain of unknown function (DUF4926). This family consists of uncharacterized proteins around 70 residues in length and is mainly found in various Caulobacter, Microcystis and Cyanothece species. The function of this family is unknown.	6.58481e-14

>NZ_AP017308.1|WP_068383077.1|2276098_2276446_+|hypothetical-protein
MWAKHLESQTVVELDAREPFTTERLLIGNFDTALSLTKTAIRHFYTARLKWTSPNIVIQPLEYLEGGLSPVEERLFLDLASMSGAFDMRVWKGSELADLQVIQLFQSAANRQQRP
>NZ_AP017308.1|WP_071837111.1|2273474_2274197_-|transposase
MRPHLPPEVAYLAVDGAYAKEGFVTGAVELRLHVISKLRCDANLQFLYTGVQKRRGRPRKYAGKVDLGDLSRFTFVETVQPDVDLYTAVVWHVSLKRAIRVAYLVDHRSSTRVRTCLLFSTDVEQDPRQIVQYYKLRFQIEFLFRDAKQFTGLEDCQARDAQKLAFHFNASLTALNLAKLDALQQHSEQVPFVFSMASVKRRLFNQHLLDRFICNLDLEPSQIKSHPNYSNLCNYGIIAA
>NZ_AP017308.1|WP_068383075.1|2272887_2273280_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MYVLDTNTLIYYFKGRGQVTQTLANIPSQDIVISTIVLYELQVGILKSTSPAKRIQQLQQILNRANLVLFDRDAALAAATVRAQLEQQGTPIGAIDVLIAGVAVSLQATLVTHNTAEFSRVSGLAIVDWY
>NZ_AP017308.1|WP_068383073.1|2272647_2272887_+|hypothetical-protein
MSIAEQIYTIVKTLPPDQANEILAFAEFIRSKHSIHVEDDQAMSWADLVNSLSGAWADDFPTLEEIRAGEGQDALRESL
>NZ_AP017308.1|WP_068383071.1|2271950_2272619_+|urease-accessory-protein-UreF
MDTLTNPALLRLLQLASPALPVGAYSYSEGLETLVHTGVIHTVDDLEHWIIQELHYGGARLEAAMLVRSHRATIAQNFDQLLYWNQWFTAARETEELRSQSLQMGGSLLRLFRSLHPDPIPNFEDGCNFAIAFGLVAALWEIDESAALVAYLHSWATNLVTAGVKLIPLGQTAGQQLLLKLGDEIGESAIAQLEDSELESCGWGLSIASMNHETLYSRLFRS
>NZ_AP017308.1|WP_068383069.1|2271535_2271967_+|urease-accessory-protein-UreE
MTPTFTRRIHPKPEPNYILSLTAEERMRSRFLFQSDDGREVYLNLPRGTTLRDGDWLESDKGEFLKIQAKPEPVLTVTTSALLDLLQAAYHLGNRHVPLEITDSYLRLSPDPVLQDLLEHRGLEIKSEIAPFQPESGAYGHAH
>NZ_AP017308.1|WP_068383066.1|2270483_2271467_+|Gfo/Idh/MocA-family-oxidoreductase
MSVSIALFGVGRWGSHLLRNFLQHPEARVVAIVDPCLEQLETIAQRFELDQRIFLTTQWQDALELSGLEAVAITTPATTHNELITAALKQNLHVLAAKPLTLSVPESLQLCQLAEQQQRQLMVDHTYLFHPAVIRGREVMQKLGKLRYGYSTRSHLSPVRSDVDALWDLAIHDIAILNFWLGESPFLVEAKGAVWLQEGLADTVWATLTYPSGFRATLHLSWLNPDKQRRSCIVGENGTLIFDELTQDQLTVQWGKFDEQFKPIEQSREILELPNQEPLQQICDHFLDCIQNDRASEISSGWLGAELVQILEALSESMRQGKAIDIK
>NZ_AP017308.1|WP_068383064.1|2269728_2270445_+|ribonuclease-III
MTIAYPRRQQELRTLIQRLGISQLDVIDWNLMDLALIHVTYSADRNYEQLEFVGDAVVKLAAAEFLLNTYPSLKVGEFTALRSVLVSDRILAQIADSFGFDRYLLVAPSAKSDPAGRASRLADSLEAVLAALYLSTQDLSLVRPWLDDQFQPLAEEILADPARQNYKAALQNWTQGHQKTLPEYRTQETGNTHNDPHRFVAEVWIQGRCMGQGTGRSRKAAEQAAAQEAFIVLSGQET
>NZ_AP017308.1|WP_068383062.1|2269060_2269669_+|hypothetical-protein
MKSQASTLELPTFCELPPTQEPLFAISEHKKSGLILCKQYHAEFAGPGAAVNCAVEPAYRAVIAIGSPELIATTTFEDRRRAHGRRIQWGRWLQRIVEQPDPTVRAEKLLAGFEEFFGRQVVVGLPNEVLALLAGVFPGTIEQVRSQHWRSTKIGTMSFLPGSDQLKVTTISPNPEEIPAVPLLTTATVSEIERTYAVLKSA
>NZ_AP017308.1|WP_068383060.1|2267626_2268319_+|hypothetical-protein
MTELDFVLLTVYFLCVTYVLYQMVTSFNDEFTIWLDQAHLDEQLETLNLKDTIGISFKFENRYEFDKLKKLQIRIANKSKEQAIYVDWDYCAMTDQYEPPRSRRITRGVAGNPTDVFPRQAFSAIAPGKTLMEDIFAEDMLSRKDGNSALQGDATVLDFKKPAKIAPAPKKKLYQQFMNGEALFKFDLYLVLRFMGFGTSAGGNQVSIVCRLNVRKLDWTAGLPWNPKKP
>NZ_AP017308.1|WP_068383081.1|2277107_2277380_+|hypothetical-protein
MQALFLSREEVARIAEELYENSLRYQIETEENIGKMVVIDIETGDYEIDETGLEASHILREKRPLARLFGIRIGYNVAASFGGVMERIKR
>NZ_AP017308.1|WP_068383083.1|2277376_2277742_+|clan-AA-aspartic-protease
MISGIVIDRHAIVALPVFLPNGATFPIEFVVDTGFTDCLCLPPDAVALLQLPFLLDLRVNLADDSRTVVPVHQAMILWNGQERAVRVFATGRRPLIGTALLAEQELVIQFTEEGLVTIDNL
>NZ_AP017308.1|WP_068383085.1|2277893_2279351_+|F0F1-ATP-synthase-subunit-beta
MVTTAEKTNIGYITQIIGPVLDVRFPGGKMPRIYNALTISGKTESGQDVSVTCEVQQLLGDNQVRAVAMSTTDGLVRGMEVSDTGAPISVPVGTATLGRIFNVLGEPVDNQGPVNNTETSPIHRPAPKLTELETKPSVFETGIKVIDLLTPYRRGGKIGLFGGAGVGKTVIMMELINNIATNHGGVSVFAGVGERTREGNDLYNEMIESGVIKKDNLNESKIALVYGQMNEPPGARMRVGLSGLTMAEYFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGDLQERITSTTEGSITSIQAVYVPADDLTDPAPATTFAHLDGTTVLSRGLASKGIYPAVDPLDSTSTMLQPSIVGNDHYDTARAVQSTLQRYKELQDIIAILGLDELSEDDRLTVSRARKIERFLSQPFFVAEVFTGSPGKYVSLEKTIAGFKRILAGELDDLPEQAFYLVGDIDEAIAKAEKMKAEAK
>NZ_AP017308.1|WP_068383087.1|2279412_2279823_+|F0F1-ATP-synthase-subunit-epsilon
MALTVRVIAPDKTVWDSSAEEVILPSTTGQLGILSGHAPLLTALETGVLRVRSDKNWVPIAVMGGFAEVEKNEVTILVNGAERGESIDLDAARTAYTEAEAKFAQADQGGSKQEQLQATQALKRARARLQAAGGQV
>NZ_AP017308.1|WP_068383088.1|2279976_2280609_+|hypothetical-protein
MNRKTCLIAAGLIGLCFSAPIAIQAAPKPLSSTIASASSPSSRTAELTRNISAVEVEKAILLGELTPDTLALDELNKRYTNLMLQLRQLEPARYQALAASATETALARKIAELDVERAIALSRFTIDAPVVQTIARQSLMLEARLKQIQPTRYQALARSAMQSALQAKIAELQALYQQEDRRLIPSAPSQQTLKTQIFELNRRLAEVPKN
>NZ_AP017308.1|WP_068383090.1|2280973_2281309_+|hypothetical-protein
MKLPNGENAQLGDKVERYCLNLEHSRGGNKAILFQSRLGITLGNQEILKMALLEAAISGDAMIYKEDRYGIHYDIKLLLETEVGSSLILSCWIIRNDEDFPRLTNAYPVDR
>NZ_AP017308.1|WP_068383092.1|2281321_2281564_+|DUF4926-domain-containing-protein
MAMIQEYDVVALTEDTPATHKTTHQSIVLRRGQVGTVLMTFEDEACLVDFADPQGMTYAMETIPLSRLLLLLQEPEVVSA
>NZ_AP017308.1|WP_068383094.1|2281728_2281965_-|helix-turn-helix-transcriptional-regulator
MGKAGQALRQVLEDFGISQNRLAVEMGIGRSNVNRWVNNFADPVGDAILEIRDGLERIDPAAAAEFTRLYWGKDQIDG
>NZ_AP017308.1|WP_068383096.1|2282279_2283740_-|PP2C-family-protein-serine/threonine-phosphatase
MTAVPLPRPSSQPPERNNSGSPDVTPVFALKELVARLNREQHKIQDLLSSLGFALRSFSNLNQFLELIPLMASRVTDADGGALILFRPNGQVKLERLHCQDAMWGQELRKGLEIATRQITASLTGLPPGEALARSSQVVAMLDHQITRHLGGEIQIFGTGILVKTNERGRLYVFSREPDYAWTETRQKLVRLVADQTAVAIENDELTVELKKKERLDRELEIGADIQLRLLPRQCPAIDGIELAALCKTANRVGGDYYDFIPADYGQTRKANPNNSDGRWSLAIGDVMGKGVPAGLIMTMTRGMLRAEVLNGHSPARILQHLNQVMYADLENSNRFVTLFYSEYDPKTRLLSYSNAAHNPPLLWQAATNTIKRLDTHGMLIGLDIETQFQDAQVQLEPGDTLIYYTDGFTDAANQYGQRFDEENLISAFRWACQHFDDPQHILKYLFDCVQQFIGMGNPNSDDMTLVVMRVKPTKDQPPSNSSTNS
>NZ_AP017308.1|WP_068383098.1|2284056_2284731_-|DUF559-domain-containing-protein
MEKLPTILFPSLDRLPLPPVGTHHKAPRGRSESQFERDLWRYFPGKIHTGLLVKRPELDQPYVPDFAYLDRDMAIDIEIDEPYTIDTRQPLHFLDCPKDRSRNQFFTAHGWIVIRFSEAQVIKNPESCCKTIASTIAKISGDNTIMNAFRQIPTLKPDRRWTIEQAQHLATQNYREQLQLKAAPKQPNIINGDLSFHCPTCGELVRWRGHYVNCANCGYDQFVL

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Crispr_ID: NZ_AP017308_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017308_6

2341404-2342462

Orphan

Consensus_repeat	Method
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	PILER-CR
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	CRISPRCasFinder
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	CRT

14 spacers

The CRISPR arrays of NZ_AP017308_6

>merge|NZ_AP017308|6|2341404-2342462|PILER-CR,CRISPRCasFinder,CRT
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAACTTTCGATCGGGTCGTAGTGCGAACACTTGCCCTCGATCGCTTTCGCACCTACTAATCCCGGCAACGGGACTGAAACCTTTGTTCCTTGGACTTGCCCGATGACTGCAAAAATCTTTCGCACCTACTAATCCCGGCAACGGGACTGAAACAATTCCTTGAGATGCTGGATGATTGGAGGCATGATCTTTCGCACCTACTAATCCCGGCAACGGGACTGAAACCCTCAACGAGTTCAGACAGATAGGATAACGCCATCTTTCGCACCTACTAATCCCGGCAACGGGACTGAAACCCGAAAAAGTCCGAAGTGAACTGATTATTGCTCCAGCTTTCGCACCTACTAATCCCGGCAACGGGACTGAAACGATCCGCACTGGCGCGAAGCTTGCAATAACTCGCCTTTCGCACCTACTAATCCCGGCAACGGGACTGAAACCGATCGCTCGGATGCTGATGAAGTGACCGTTCTGATCTTTCGCACCTACTAATCCCGGCAACGGGACTGAAACGAATACTTGCCCACTCGTAGGAAACTTTCTCTAGCTTTCGCACCTACTAATCCCGGCAACGGGACTGAAACTTCATTGTGTTAGTCAGTTTCGACACCGATACATCAGGTCTTTCGCACCTACTAATCCCGGCAACGGGACTGAAACTGGCAATGTTTGAGGTGGAACTGATTCCCGTAGATGCTTTCGCACCTACTAATCCCGGCAACGGGACTGAAACAGCGCTCCGATGTCAGCTGGCAGAATTCCAAAGAATGCCTTTCGCACCTACTAATCCCGGCAACGGGACTGAAACTAATAACGAACTCTGGACAAGTGAAGAAGCGAGTCTTTCGCACCTACTAATCCCGGCAACGGGACTGAAACGCGAAATCATTTCCCCTAGTTACTGTAAGCTTCGTGCTTTCGCACCTACTAATCCCGGCAACGGGACTGAAACATATTCTTGCCGTCGCTGCCCGACTTTGCGATCGACACTTTCGCACCTACTAATCTTGCCAGGGATTATACTTC

>NZ_AP017308|6|3|2341404-2342315|PILER-CR
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	TTTCGATCGGGTCGTAGTGCGAACACTTGCCCTCGATCG
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	CTTTGTTCCTTGGACTTGCCCGATGACTGCAAAAAT
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	AATTCCTTGAGATGCTGGATGATTGGAGGCATGAT
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	CCTCAACGAGTTCAGACAGATAGGATAACGCCAT
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	CCGAAAAAGTCCGAAGTGAACTGATTATTGCTCCAG
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	GATCCGCACTGGCGCGAAGCTTGCAATAACTCGC
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	CGATCGCTCGGATGCTGATGAAGTGACCGTTCTGAT
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	GAATACTTGCCCACTCGTAGGAAACTTTCTCTAG
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	TTCATTGTGTTAGTCAGTTTCGACACCGATACATCAGGT
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	TGGCAATGTTTGAGGTGGAACTGATTCCCGTAGATG
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	AGCGCTCCGATGTCAGCTGGCAGAATTCCAAAGAATGC
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	TAATAACGAACTCTGGACAAGTGAAGAAGCGAGT
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC

>NZ_AP017308|6|6|2341404-2342388|CRISPRCasFinder
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	TTTCGATCGGGTCGTAGTGCGAACACTTGCCCTCGATCG
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	CTTTGTTCCTTGGACTTGCCCGATGACTGCAAAAAT
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	AATTCCTTGAGATGCTGGATGATTGGAGGCATGAT
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	CCTCAACGAGTTCAGACAGATAGGATAACGCCAT
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	CCGAAAAAGTCCGAAGTGAACTGATTATTGCTCCAG
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	GATCCGCACTGGCGCGAAGCTTGCAATAACTCGC
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	CGATCGCTCGGATGCTGATGAAGTGACCGTTCTGAT
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	GAATACTTGCCCACTCGTAGGAAACTTTCTCTAG
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	TTCATTGTGTTAGTCAGTTTCGACACCGATACATCAGGT
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	TGGCAATGTTTGAGGTGGAACTGATTCCCGTAGATG
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	AGCGCTCCGATGTCAGCTGGCAGAATTCCAAAGAATGC
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	TAATAACGAACTCTGGACAAGTGAAGAAGCGAGT
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	GCGAAATCATTTCCCCTAGTTACTGTAAGCTTCGTG
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC

>NZ_AP017308|6|2|2341404-2342462|CRT
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	TTTCGATCGGGTCGTAGTGCGAACACTTGCCCTCGATCG
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	CTTTGTTCCTTGGACTTGCCCGATGACTGCAAAAAT
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	AATTCCTTGAGATGCTGGATGATTGGAGGCATGAT
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	CCTCAACGAGTTCAGACAGATAGGATAACGCCAT
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	CCGAAAAAGTCCGAAGTGAACTGATTATTGCTCCAG
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	GATCCGCACTGGCGCGAAGCTTGCAATAACTCGC
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	CGATCGCTCGGATGCTGATGAAGTGACCGTTCTGAT
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	GAATACTTGCCCACTCGTAGGAAACTTTCTCTAG
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	TTCATTGTGTTAGTCAGTTTCGACACCGATACATCAGGT
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	TGGCAATGTTTGAGGTGGAACTGATTCCCGTAGATG
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	AGCGCTCCGATGTCAGCTGGCAGAATTCCAAAGAATGC
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	TAATAACGAACTCTGGACAAGTGAAGAAGCGAGT
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	GCGAAATCATTTCCCCTAGTTACTGTAAGCTTCGTG
CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	ATATTCTTGCCGTCGCTGCCCGACTTTGCGATCGACA
CTTTCGCACCTACTAATCTTGCCAGGGATTATACTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017308.1\|WP_068383166.1\|2331220_2332099_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225707
NZ_AP017308.1\|WP_068383170.1\|2334973_2337373_+\|sucrose-synthase	unknown	unknown	gnl\|CDD\|274149
NZ_AP017308.1\|WP_068383185.1\|2346664_2347600_-\|phytoene-synthase	unknown	unknown	gnl\|CDD\|215339
NZ_AP017308.1\|WP_068383183.1\|2345684_2346581_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|110924
NZ_AP017308.1\|WP_068383181.1\|2344983_2345616_+\|repressor-LexA	unknown	unknown	gnl\|CDD\|273106
NZ_AP017308.1\|WP_084761989.1\|2333957_2334821_-\|septum-site-determining-protein-MinC	unknown	unknown	gnl\|CDD\|179052
NZ_AP017308.1\|WP_068383175.1\|2339989_2341144_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_AP017308.1\|WP_068383179.1\|2342947_2344846_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NZ_AP017308.1\|WP_068383164.1\|2330348_2331224_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068383168.1\|2332099_2333188_-\|pilus-assembly-protein-PilM	unknown	unknown	gnl\|CDD\|227306
NZ_AP017308.1\|WP_068383172.1\|2337413_2338241_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|368559
NZ_AP017308.1\|WP_068383191.1\|2351751_2353257_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224154
NZ_AP017308.1\|WP_084761990.1\|2349630_2351721_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214807
NZ_AP017308.1\|WP_068383193.1\|2353713_2354517_+\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NZ_AP017308.1\|WP_084761991.1\|2354544_2354931_+\|cell-division-topological-specificity-factor-MinE	unknown	unknown	gnl\|CDD\|184441
NZ_AP017308.1\|WP_068383174.1\|2338346_2339552_-\|cistern-family-PEP-CTERM-protein	unknown	unknown	gnl\|CDD\|185594
NZ_AP017308.1\|WP_068383187.1\|2347631_2349050_-\|15-cis-phytoene-desaturase	unknown	unknown	gnl\|CDD\|131778
NZ_AP017308.1\|WP_068383162.1\|2327785_2330257_-\|type-IV-pilus-secretin-family-protein	unknown	unknown	gnl\|CDD\|227133
NZ_AP017308.1\|WP_068383159.1\|2327464_2327716_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068383177.1\|2342489_2342873_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224380

Protein	Function_ID	Function_description	E-value
NZ_AP017308.1\|WP_068383166.1\|2331220_2332099_-\|hypothetical-protein	gnl\|CDD\|225707	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion].	6.7176e-13
NZ_AP017308.1\|WP_068383170.1\|2334973_2337373_+\|sucrose-synthase	gnl\|CDD\|274149	TIGR02470, Sucrose_synthase_1, sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_AP017308.1\|WP_068383185.1\|2346664_2347600_-\|phytoene-synthase	gnl\|CDD\|215339	PLN02632, PLN02632, phytoene synthase.	9.94633e-154
NZ_AP017308.1\|WP_068383183.1\|2345684_2346581_+\|hypothetical-protein	gnl\|CDD\|110924	pfam01972, SDH_sah, Serine dehydrogenase proteinase. This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan.	1.06132e-126
NZ_AP017308.1\|WP_084761989.1\|2333957_2334821_-\|septum-site-determining-protein-MinC	gnl\|CDD\|179052	PRK00513, minC, septum formation inhibitor; Reviewed.	3.09424e-84
NZ_AP017308.1\|WP_068383175.1\|2339989_2341144_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	3.65954e-49
NZ_AP017308.1\|WP_068383179.1\|2342947_2344846_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_AP017308.1\|WP_068383181.1\|2344983_2345616_+\|repressor-LexA	gnl\|CDD\|273106	TIGR00498, LexA_repressor., SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA. [DNA metabolism, DNA replication, recombination, and repair, Regulatory functions, DNA interactions].	1.62497e-43
NZ_AP017308.1\|WP_068383172.1\|2337413_2338241_-\|transcriptional-regulator	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.94941e-09
NZ_AP017308.1\|WP_068383191.1\|2351751_2353257_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.87396e-98
NZ_AP017308.1\|WP_084761990.1\|2349630_2351721_+\|hypothetical-protein	gnl\|CDD\|214807	smart00758, PA14, domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.	8.60762e-29
NZ_AP017308.1\|WP_068383193.1\|2353713_2354517_+\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	1.91722e-144
NZ_AP017308.1\|WP_084761991.1\|2354544_2354931_+\|cell-division-topological-specificity-factor-MinE	gnl\|CDD\|184441	PRK13988, PRK13988, cell division topological specificity factor MinE; Provisional.	7.44928e-32
NZ_AP017308.1\|WP_068383174.1\|2338346_2339552_-\|cistern-family-PEP-CTERM-protein	gnl\|CDD\|185594	PTZ00395, PTZ00395, Sec24-related protein; Provisional.	5.97349e-11
NZ_AP017308.1\|WP_068383187.1\|2347631_2349050_-\|15-cis-phytoene-desaturase	gnl\|CDD\|131778	TIGR02731, Phytoene_dehydrogenase_chloroplastic/chromoplastic, phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_AP017308.1\|WP_068383162.1\|2327785_2330257_-\|type-IV-pilus-secretin-family-protein	gnl\|CDD\|227133	COG4796, HofQ, Type II secretory pathway, component HofQ [Intracellular trafficking and secretion].	6.55984e-46
NZ_AP017308.1\|WP_068383168.1\|2332099_2333188_-\|pilus-assembly-protein-PilM	gnl\|CDD\|227306	COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion].	3.03466e-126
NZ_AP017308.1\|WP_068383177.1\|2342489_2342873_+\|hypothetical-protein	gnl\|CDD\|224380	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism].	0.000712362

>NZ_AP017308.1|WP_068383175.1|2339989_2341144_+|M23-family-metallopeptidase
MNTIVQSLSSLKKLLIGLCCVALLCLPVAAQEIDQLKQQQQQLDQQRSQIQKEREKVQRQERSAQTDLNGIRRNIQATTGQIQTTEAKLTNANRVLKKLEAQLGEAEKSYQQRQSATASRLRFLQRQQESRGWAVLLQSENLNDFLDRRFRLKQIYKNDRRNLAELKTEAEKVDRQRQQVEQQKINITLLAQQLMVQKAQFEQQAESQKEIVERLRTNRRALEAAEAQLEKDSKSIGELIQRRIAEERAKNGIVILGTGQFNLPSDGPITSGFGYRTHPILGYQRFHAGVDFGADFGHPILAADRGTVIFAGWYGGYGNSIILDHGNGITTMYAHAQELYVSEGETVERGKAIAATGSTGLSTGPHLHFEVRENGEPVDPMNYL
>NZ_AP017308.1|WP_068383174.1|2338346_2339552_-|cistern-family-PEP-CTERM-protein
MSNNLSPTLSMLCSGVASLTLLLVANPAFAKANNANSNSNSNRNSPTQTQTPTPTQTPTTTQTPTQTVVAPTQSATPATSSFSVGLADLGKIFRINFDGNVSTNTVSGLTSFVDLTFKGFTTQNGNTIATFDALLDNTSSGDIFSRVSGFGFDTSGTLLSATTNGLFNRSHLDGSFPNQFGNVDVCFNSGSNCQGGSNGGVSNSTSLPGTFDSGNFSFTLALSGSVNTLSLSNFGVRYQSIDSTSLNLSGASGTGRGTSITVNPPSTNPPTNPNPPANPPTNTNPPSTNPPTNPNPPANPPIDNPPANPPTSTNPPSTNPPTNPNPPANPPANPPLFDTPIDGTKPNDPTPPTPPSNPTPPPRVTTPKPVKVPEPSTIAALTLVSAMALKYRKKREVESEL
>NZ_AP017308.1|WP_068383172.1|2337413_2338241_-|transcriptional-regulator
MTIAKPPLSLPDHTQLPESDGTFVKNFQEHPQSILLTTSIRPTLNALHPDGQYAIGQDCGIYWRLTDPPERGAEAPDWFYVPNVSPLLDGQTRRSYVMWKEIIAPLIAIEFVSGDGTEERDYTSPFSSESAKAGKFWVYEQAIHIPFYAIYEVEKASVEVYELIANRYQRCQPNERGHFPIASIGVELGIWEGQYANQTLPWLRWWDSEGNLLLSSDERADQEQQRADQEQQRADQEQQRAELERQRAEQERQRVEQLEAFLRSQGFDPNQLPES
>NZ_AP017308.1|WP_068383170.1|2334973_2337373_+|sucrose-synthase
MSDLIQAVLKSDEKSDLRNFASVLRAFGKRYLLRNEILQLFDEFSQQLKKQNSSQLEKLIRYVQEIIVEDRNLYFIIRPKIARQEAYRLLEDLTIEPITIQELLDIRDRFVNHYHPQEGDVFEIDFAPFYDYSPVLRDSKNIGKGVEFLNRYLSSRIFQDSKKGQETLFQFLQLHQYNGMQLLINGRIRSSEELSDRVKQALGILSDRDPNESYEFFRFDLQNIGFEPGWGNTVARVKETLEILDQLIDSPDHQTLETFVSRIPMIFRVAIISPHGWFGQEGVLGRPDTGGQVVYILDQVKSLEKQLQEDLALAGLEISPKVIVLTRLIPNSDGTLCNQRLEKIHGTIDAWILRVPLREFNPNLTQNWISRFEIWSYLETFSIDAERELKAEFQGRPDLIIGNYTDGNLVAFLLSRRLKVTYCIIAHALEKSKYLFSNLYWQESEEKYHFSLQFTADLIAMNGANFIISSTYQEIVGTPESVGQYESYKSFTMPDLYHVVNGIELFSPKFNVVPPGVNESVYFPFTRTEDRLLNDRQRLENLLFTDEDPDSIFGTLDDPNKRPLFSMARLDRIKNLTGLAEAYGKSEALQTRCNLILIAGKLRVDDSSDYEEISEIERLYEIIDRYNLNGKIRWLGVRLPKGDTGEVYRVIADRQGIFVQPALFEAFGLTILESMITGLPTFATRFGGPLEIIQDKVNGFYINPTDHEEVANVILEFLAQCDRDPNYWNEIAQKGIDRVYSSYTWKIHTTRLLSLAKIYGFWNYTSQENREDLLRYVESLFYLLYKPRAQRLLQEQMQQ
>NZ_AP017308.1|WP_084761989.1|2333957_2334821_-|septum-site-determining-protein-MinC
MTSDTSLSPLSNDPTPISPEAVSSPDVDADLLDLPPLETPEVPKIAIEDLQVRLKAKDGVLSLILPPESEAASKVALAWGELWQQLKQLLMGRERQWQPNTIVHLIADDRLLDTRQLSAIAEALTDVQLQLKSVHTRRRQTAVVAATAGYSVEQITAVDPLAAKQETAVAMEEPLYIQMTLRSGTEIRHNGTVVVMGDLNPGSTIIAEGDILVWGRLRGVAHAGCKGNVKSLIMALQLEPTQIRIADYVARAPETPPAQYFPEVAYVSPQGSIRIARATDFSMRKDD
>NZ_AP017308.1|WP_068383168.1|2332099_2333188_-|pilus-assembly-protein-PilM
MVNVKSLFSKKSKGVGIELAADRLNIALLRKQGQGFRLGTYATVPIPEGVFHEGQIADPPAMAEIIQSALAEHKIKVKQVATAVPGGRDTVTRIIPVPAELDDRELREMVLNQEAGLYLPFPREEADVDYQKLGLFVDEDGIEKVQVLLVATRKEVTDTYLNTFQQAGLTVDVLEVSSFSLIRTIREQLRQFAPQEAVALVDIEFENTEISIAVDGVPQFSRTVPIGTYQIQSALSRAMNLPPSRNIDLLQGMTIPTGDSNRPGGNPGAAAMLRVLGELSDELRRSIDFYLNQGENLEVAQVMLAGPGAAIGQLDEFFTQRLSLPCSLIDPVSSLSLGASEIPENLRPSLGVVLGLGLREAW
>NZ_AP017308.1|WP_068383166.1|2331220_2332099_-|hypothetical-protein
MYSLDVNFLNDRSEIKSDKKRGGGRGKPSISPTDRRPLYLGFAALVFFPAVAAALLGILTLRNGDLEKQQADLDVQLGNLETEKKNLSKVQEEAKQATAEAEALASVFNQIKPWSAMTQDIRDRLPATIQLASITQVAPTATTPPPAGTTPVASAAPVSSRIQIQGTASSMNDVNDFMLTLQQSNFLRADQTKVVSAELGEEKTLQIPKFPGVEREVGQFKAPRLPRRVSFTITTAINDVPASELIRELDRKGAVGLVTRIEALKQRGVISETATPKSPTPAATQKDGAKTP
>NZ_AP017308.1|WP_068383164.1|2330348_2331224_-|hypothetical-protein
MTADFIPDSEFENAPNYPTAFGITFTPTISGVLLGVLGLLGAGALFNYLVMPAWETNQTLSAAVQEKTTQLEQQGAIRKQIQDAKDQLAKAKQKRDQVYGLFANEKTLNTLLFDLNQLIERNNAGLLAARNTKLNGCPVYVRQAFATPGGAQEFEDKFGKLVAEAKLHRFKPSEVGAIVVNDGSLGAPIDNKLKRQSIDVEIRGNFNQTQSIFRTIERLQPLILVRNLNVKVVDNKIAEGLYEIQPDGTIRYLTNCQPDNQITTTFQMDALMPLTDVDRQAVQAAQQPPKP
>NZ_AP017308.1|WP_068383162.1|2327785_2330257_-|type-IV-pilus-secretin-family-protein
MKELRAISIATAATLALVSPAIANPTQVTNVRVNPNGAGFDVVLETQGSKAPQVFNVNRGNTWNAYVFNAQITQPFRQNNPAPGIAQISVIPSGANGVQVTVVGTNAAPIGQIASRNEQGVIFNVSGAGGGSTPNPQPTAAAPMTTAQAQSTRSAPLPTTPVAQAVPNSTTPVAPFVPSAQVPNQGQPTVPVAPTPPLMRRAVAPPVGDQAISQIDTSPTLVDLGTNERIPRLVLRDAPVREVLSLLARAANLNLAYSESGAAGAQPGAAAGAARPNGPTISLDIQNESVQDVFNYVLRVACIPVANAGGASGGAGSCAALDVNRVGRTIFVGPRLPDDARNIISRTVRLNQVSVSDAAAFLTTQGAETQRPFEQVEIQTVGEGAGARVIERRTPSILSLRATEGTAPLVLRGLSVSSNDRLNSITLTGAPRKVEIATRLLGQLDARKRQVAINVKIVDVNLLKTDDFNTSFSFGIGNNFFNVDRGAAVFNFGQYRPPNNTEANASLSGRPIINNPYSGSNTFIDLNNTVTVPNTSPGLRVLSDGRVVQDIPNGDGTFLTRSVRIQNPFQPGITDITPATQSISSTVTDPATGARTTTFAPGTIGSVISSLPTLFQFPSQFLARLQSQVTSGNAKILTDPTVVVQEGEKANVNLTQDVITNTRITRTDTAGVSRETVELERQEAGLKLDITLERIDDNGFVSVRINPSVTAPVNSVDTGAGRVVLLSRREIQSGLIRLRDGQTLILSGIIQESDRASVRKVPILGDLPLLGSLFRSTNRENQRQEVIVMLTPQILDDSDQSNFGYGYVPGREVRQFLQQQENR
>NZ_AP017308.1|WP_068383159.1|2327464_2327716_+|hypothetical-protein
MLKEKVKQQIDKLNEEQLKQVESFIATLQIQAQQSQEPRRFWETATPEEWVRSFQEMVAQFPKTGGSLSDEACDRESIYYGEE
>NZ_AP017308.1|WP_068383177.1|2342489_2342873_+|hypothetical-protein
MSEESQSNLEDRIIDLESSMGDVKSAINQLIDYSVQNNERLTNSVDQLAQVVQTLAEGTSQQVDRVTQRLNQLTETTQTLAESVASDRENTQRRLNQLEESNRSIQAAVDRFDQLLDYLIRRDGDRT
>NZ_AP017308.1|WP_068383179.1|2342947_2344846_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MSVEFLDSYDVVVVGAGHAGCEAALATARLGCRTLLLTLNLDKIAWQPCNPAVGGPAKSQLVHEADALGGEIGKMADRTYLQKRILNSSRGPAVWALRAQTDKREYAALMKTIVENQENLTIREGMATDLVLNANDEVIGVETYFGVAFECKAVVLTTGTFLGGKIWVGNKSMDAGRAGEFAAIGLTDTLNRFGFETGRLKTGTPARVDRRSVNFNVLERQPSDSEVRWFSFDPEVWIERETMDCHLTRTTAETHRIIRENLHLSPVYGGWVDAKGPRYCPSIEDKIVRFADKESHQIFIEPEGRDIPELYIQGFSTGLPEKVQLQMLRSLPGLETCAMLRPAYAVEYDYLPATQCYPTLMTKKISGLFCAGQVNGTTGYEEAATQGLVAGINAARLCQGQEMVIFPREQSYIGTLIDDLCTKDLREPYRMLTSRSEYRLILRSDNADQRLTPLGREIGLIDDRRWTLFTQKQENIAAEKERLHETRVKELDEVGKAIVRSTQQAIKGSITLAELLRRSGFHYVDLERYNLGNVNLAQSEKEGAEIDIKYSGYIQRQQHQIDQISKQEHRKLSESLNYDEIETLSKEAREKLSKVRPLTIGQASRIGGVNPADINALLIYLEIQARRMAGVV
>NZ_AP017308.1|WP_068383181.1|2344983_2345616_+|repressor-LexA
MSDLSPPKQKLLDWLEDHIDRYHSVPSYGEMAAALGYKSKDTIRFHLIDLRDAGYVAWKEGSVKSLVICKPRSRNIPILGVIAAGGLVETFADSDVGEYVDVSTLPHFVGKRRQQMNQYFALRVRGDSMIGAAIADGDVVILRKESEPKTIRNGEIVAARFETQTTLKHLFWSGDQIILQPANPSYPVIEKQAKEVAIEGVFVGLVRGLV
>NZ_AP017308.1|WP_068383183.1|2345684_2346581_+|hypothetical-protein
MTFSFFDLIWVFFIFSSLQPLWQRRQTETRRFRTLKDIERKRNSRVILLVHRQESISLLGIPLSRYITIEDSEQILRAVRLTPPDVPIDLILHTPGGLVLATEQIARALIRHPAKVTVYVPHYAMSGGTMLALAADEIVMDANAVLGPVDPQLGNFPAASVIKVVEEKPIGDIDDQTLIMADLSRKAIAQVQRFVRTLLKDTIPNPKIDPDKIENVIDALTTGKVTHDYPITVEEASELGLPITVGLDREIYDLMELYPQPQGGRPSVQYIPLPYERRPTLPEPKGRPLPEGTRVQRD
>NZ_AP017308.1|WP_068383185.1|2346664_2347600_-|phytoene-synthase
MLQLPEQPSSFVRSLASVDEAYEQCRQLMEHFTKSFYLATLLFPAEKRRAIWAIYVWCRRTDELVDGLNGKLATDDTLDQWETRLEKIFAGYPEDDFDVALVDTVERFPIDIQPFRDMIAGQRMDLYRSRYQTFDELYLYCYRVASTVGLMSTNVMGLAEPDKSVPWYRPDTSYSPLDDAIALGVAKQLTNILRDIGEDARRGRIYLPLEDLERFGYTEDDLFKGVNDDRWKALMKFQIDRARQFYTQAERGIGSLNEDARWPVWSALMLYSRILNAIENNNYDNFNRRAYVPGMRKMSLLPISWLRAKVL
>NZ_AP017308.1|WP_068383187.1|2347631_2349050_-|15-cis-phytoene-desaturase
MRVAIAGGGLAGLACAKYLVDAGHTPIVLESRDVLGGLVAAWKDEDGDWYETGLHAFFGAYPNMLQLMGELNILDRLQWKEHALIFNQPEKPETYSYFKVPDIPAPFNVILSILNNNDMLTWEQKIRFAIGLWPGVLRGQKYVEDMDKYSLLEWLRRQGIGERVSSDIFIAASKALTFINPDEVSATIILTALNKFLQERYGSKIAFLDGSPTERLCQPIVDHIEANGGEVHLKKPLKQILLNDDNTVKGFLIRGLDGAPDEIITADRYVSAMSVDVMKVLMPQPWKEMPFFQKLEGLEGVPVINLHLWFDRKLTDIDQLLFSRSDLLSVYADMSVTCKAYEDPNQSMLELVLAPAKDWIDKSDEEIIAATMKDLERLFPHHLTGDNPAKLRKYKVVKTPRSVYTSSPGRQAYRPDQVTPIDNFYLSGSYTMQQYLGSMEGAVLSGKLTAQAITNAPVTTTAEPKPLVTSSN
>NZ_AP017308.1|WP_084761990.1|2349630_2351721_+|hypothetical-protein
MVLDPTPSMQGDLGSFSLPKNVTAALSTDPNPDTLFPALNVVAASSSTTYGAMGFKAEYFNDTNLTQRAIIRTDPTIDFNWGRNSPNQAVNSDNFSVRWTGQLYPLYSEAYTFSADADDRIRVWVNDQLLIDRWDVPSDRNPTINLDAGQNYSIRVEYAEIGGDASARLQWSSPSQTREIIPQSQLKSPFISINTNPGAALMSDVRDIDINSLTPINDSLSSENLSDFYRFTLTQSTAINVTIGSLAANVDLKLLNERGDIISTSANDGTMMESIAAVLSAGTYMLQVFSNQPVNTQYVMTSAIADTIRERARPADTFIDSIGINTHLRYTGLTYGRFDDLVVPRLKEMGIRHIRDGGNDPNLYPKLRRLAENGIKTTLIMDPRDGVTPDNAVSLIKAGMPGIEMVEGPNEWDAGNMNYKGATFPDGLRLYQSELYRAVKNDPMTSKLPVLIPSMAQPENAEPLGSSLAQFSDYANMHSYSGGRIPSFDFDRRWLPLTRKYSDNKTIIATETGYHNAINDRETTHKAVTEQVSAKYIPRTFLEFFNRGVKRTFLYEFLDQRPLPDAENNFGIIRADGTPKPAFYALRNMIQVLNDKPGSTANGALSYYFSGDVKDLRHMLLQKSSGDFYLVMWLNSESTDATKTQRVTVNLLTPTQQAATFLPNRSASATATFNTPSRVTMDVPDAPIILKVVPKT
>NZ_AP017308.1|WP_068383191.1|2351751_2353257_-|NAD(P)/FAD-dependent-oxidoreductase
MSDVIVIGSGIGGLSCAAILAKYGFEVLVCESHAIAGGAAHSFERDGYVFDSGPSLYSGMSYSPSPNPLRQVLDAIDEEIEWLNYETWGCCLPEGTFDTQVGASQFCEVLHQLRGESAVAEWRRLQEVMTPLAKAAIALPPAAVRYDLGAILSVGQFLPSMLQNAIGLAQLTGAFAPVMNRVVTDPFIRNWLDLLCFLLSGLPADSTNAAEVAFMFADWYRPNVKLDYPKGGSGAIVQAFVHGIEKYGGKVRFRAHVEKVLVENQKAVGVRLRNGEELRSRYVVSNASIWDTLKLVDSFPKRFEQERQATPTCDSFMHLHLGIDGQGLDSIACHHIVVNDWNLGITAPQNVVLISIPSILDPSLAPPGKHAIHVYTPGNEPYKIWEQGENYEELKQQRSQIMWKALERVIPDIRSRTELSLVGTPITHERFLRRYRGTYGAAIRATDGLFPSAMTPISGLLCCGDSTFPGIGLPAVAASGMIAANTIAPVGKHLELLRSIR
>NZ_AP017308.1|WP_068383193.1|2353713_2354517_+|septum-site-determining-protein-MinD
MARIIVITSGKGGVGKTTTTANLGMALAKRRRKVAVIDADFGLRNLDLLLGLENRVVYTAVEVLAGQCRLEQALVKDKRFQNLVLLPAAQNRTKEAVTPDQMRQLVNALSRVYEYILIDCPAGIEMGFQNAIAAAREAIIVTTPEIAAVRDGDRVIGLLEANNIKRINLIVNRIRPNMVQANDMMSVEDVQEILAVQLLGVVPDDEKVIVSTNKGEPLVLSETPSQAAIAFDNIVRRLEGERVPLMNLEPPKEGFFARLFGRFSGKN
>NZ_AP017308.1|WP_084761991.1|2354544_2354931_+|cell-division-topological-specificity-factor-MinE
MITELLERLFPRGIDNSRTDVKRRLKLVLAHDRADLPPHMVEELRKEILDVVSRYVELDEGMEFSLENHQRSTSLIANLPIKRIRTMPDSTPADDAIQLDLTLTEAVLTEDPPTKTEPAKPAPPKLKE

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Crispr_ID: NZ_AP017308_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017308_7

3147145-3147234

TypeIII

Consensus_repeat	Method
CCTGTTACCACCTGTTACCACCT	CRISPRCasFinder

1 spacers

cmr5gr11,cmr4gr7,cmr3gr5,cas10

The CRISPR arrays of NZ_AP017308_7

>merge|NZ_AP017308|7|3147145-3147234|CRISPRCasFinder
CCTGTTACCACCTGTTACCACCTAAGAATTTAAGGTGGTAACACCCTCAAAGCACTGATAACATTGAGCTTTAGTATCCTGTTACCACCT

>NZ_AP017308|7|7|3147145-3147234|CRISPRCasFinder
CCTGTTACCACCTGTTACCACCT	AAGAATTTAAGGTGGTAACACCCTCAAAGCACTGATAACATTGA
GCTTTAGTATCCTGTTACCACCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017308.1\|WP_068384555.1\|3155731_3156166_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384541.1\|3148940_3149192_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384523.1\|3142638_3142908_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384531.1\|3145844_3146201_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384533.1\|3146206_3146419_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384519.1\|3139778_3141188_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384537.1\|3147856_3148048_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384529.1\|3145246_3145852_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384525.1\|3143178_3143394_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384539.1\|3148242_3148482_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371375
NZ_AP017308.1\|WP_068384544.1\|3151320_3151743_-\|hypothetical-protein	cmr5gr11	mkCas0065_cmr5gr11_CAS-III-B	unknown
NZ_AP017308.1\|WP_068384527.1\|3143471_3144098_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384546.1\|3151745_3152558_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NZ_AP017308.1\|WP_068384552.1\|3155355_3155679_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384535.1\|3146476_3146938_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384550.1\|3153643_3155329_-\|hypothetical-protein	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NZ_AP017308.1\|WP_068384521.1\|3141592_3142639_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212669
NZ_AP017308.1\|WP_068384548.1\|3152589_3153651_-\|hypothetical-protein	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|370625
NZ_AP017308.1\|WP_068393183.1\|3148545_3148944_-\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350222
NZ_AP017308.1\|WP_068384517.1\|3138967_3139705_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP017308.1\|WP_068384539.1\|3148242_3148482_-\|hypothetical-protein	gnl\|CDD\|371375	pfam11103, DUF2887, Protein of unknown function (DUF2887). This bacterial family of proteins has no known function. These proteins may be distantly related to the PD(D/E)XK superfamily.	6.46324e-07
NZ_AP017308.1\|WP_068384546.1\|3151745_3152558_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	6.68966e-26
NZ_AP017308.1\|WP_068384550.1\|3153643_3155329_-\|hypothetical-protein	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	1.23172e-16
NZ_AP017308.1\|WP_068393183.1\|3148545_3148944_-\|PIN-domain-containing-protein	gnl\|CDD\|350222	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis CDC1551, hypothetical protein MT3492, and similar bacterial and archaeal proteins are included in this subfamily. They are PIN domain homologs of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	7.12766e-05
NZ_AP017308.1\|WP_068384548.1\|3152589_3153651_-\|hypothetical-protein	gnl\|CDD\|370625	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3). CRISPR is a term for Clustered Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family, found in at least ten different archaeal and bacterial species, is represented by TM1793 from Thermotoga maritima.	3.30695e-05
NZ_AP017308.1\|WP_068384521.1\|3141592_3142639_+\|hypothetical-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	6.94405e-08

>NZ_AP017308.1|WP_068384535.1|3146476_3146938_-|hypothetical-protein
MRSDGIAYTTAAQLEGVSHNAASDWLKRHPELKANVQAAQLHLRTQLAEKVQKAALEGAKTIVEKTRYDASGKPIESEKTVSTDDGIKYSQWLLARLDPENYSEKGKIEKLAQKRFSELLQYLLAGVSDVARAEIESHLLIAGIKVKPIEFSE
>NZ_AP017308.1|WP_068384533.1|3146206_3146419_-|hypothetical-protein
MNTTEEWTKLEQKFLKLADENIRQPKLAEHYLKMAARASQERIRGLQTAERKNTNRDRRLISIRKWANIN
>NZ_AP017308.1|WP_068384531.1|3145844_3146201_-|hypothetical-protein
MYINSKHCETRSYAPRFGAWKLIFTEPKTKTEITIGVYHNQKTLQEAAAWIDHCVHLLSVRDWINLVSENPLPFRKAMCGFLILLPKCECQGKQTDEGKPIHLHFLKAPVKTSDSTDV
>NZ_AP017308.1|WP_068384529.1|3145246_3145852_-|hypothetical-protein
MFRYSAIEWYELQKRFIREPETVSIRDYSFEVTGDDSYPLWEALEEKYREQEWDLIRDYHRTNAGEEVTIENSSAVKSALADVERVSNPLRAIARTIKFSQNVQSNVERALERAFLALESTSFGLESPADISKVLKDLAGIYQTMNGLERQVLGIKDPAELLKTSTDNDNEMTIDELSEHLTELGDQEIVMFLSELQKSND
>NZ_AP017308.1|WP_068384527.1|3143471_3144098_-|hypothetical-protein
MSKHLVSLGLLSALFNLSTVAYSQEYPTFKTKNETHAVLTKSLEAQYPGVPVLNKKDWRTAEDIPWSKIVIVKDDFDGDYVAVFDKNYQKDSTGSEAGIISNWSQNQIRVYAYGIRRQCGLFNLVCKELERKDLETGDLSIRVGEQVFKLVGKNGNYPMNPELATALRNAPSGKAKIRVTLEGSGSTITNDIGEKTVEAWKIVYKPSD
>NZ_AP017308.1|WP_068384525.1|3143178_3143394_+|hypothetical-protein
MRTQANEALRAFNLIHNVRAIAIIQDDFIRRNTRVFWWQKIQYQVLVSWLPTVVVELDEIDLEMMRIIEAR
>NZ_AP017308.1|WP_068384523.1|3142638_3142908_+|hypothetical-protein
MPSQKQRVSVTITDQLQKTLNTLWRNYPDLEGHVLESIQFLMIYGSEAIERDRKGLPTQEDNQTTGDITPLLKNPPEEPKFVSPADEWA
>NZ_AP017308.1|WP_068384521.1|3141592_3142639_+|hypothetical-protein
MQLTTVQDPTSLNKNANDRLLMAIDRGNSGTKIAVSINGIPLDPFKIPSVIRQVASNGVIEIGKNQYVCGDAAISMTVGSVSTPLRTGDKVEGLSIVIAQAVQKVSEIRSLSNVIEMDLIVSSPFASDKLVKQIKAELKTVTEGFKIDGNTYKITVGNVSVKFEGAVLLESAREFNGLIDIGFGTILAAYRGASGKVAIAPLMGGDLGGCNLVLNGLLNDPAFLAAVKKSGASAPPSAERLSSKLSEGITVLRNFDLKPLLKAHLKVLKTRIEDAALSVGTELRLSSENSDTIARIALVGGGAALMRMLLTEDQLTAWCKKHKLEVIDQPDYQTVMAMHQIAHTGGLN
>NZ_AP017308.1|WP_068384519.1|3139778_3141188_+|hypothetical-protein
MSNLVKHSEHRIIWTIGNTQIVDSEPDTGIVPLLKISALGIGAIVAAPVSPMIAVALFGYGAYKIFDLATSIGSDGANLAKDIYADVNGDETEDDSVPDGWVNLPQIEESEPVRIRTQLGEQSAIDVPVQPAKPIESPNGFGCILADPYQSRAFFGAQRTGKTYLAAVASREMSTRLGVKVFHMNLASFGTEDDHYWSHATESLRCDLSALDGYTAKQLTVRAIDLVKRFYATQNAILVVDEIAYLGSTGSEHREALEPLLRIIADKITTLSSSGKKRQQAVWTIAPEFVAGSLTQDAKAVKKLNLCYVSIHPQKTVDWNGQSIGFDWGLFNQIKANFTITDPTSVPNDDRICFVSGNWLPLGKLPTIEKVEKPNAVPQHSPKDVRAQLEKSFQSTDIEENDNSESAIRKEMIRFLAENPGGAKPRDFANRARSPVRRMPTEEIKLFLDVMVIDGEVLEVGESFFPNIN
>NZ_AP017308.1|WP_068384517.1|3138967_3139705_+|hypothetical-protein
MVKTTGTSQQSSNPQGSNQTYNSAHQEKAYNGYKSSAPSRNNRALLKFVEYSFYAIAGLLAFFSATPWIEVGHAIGSEIAATRLYNALVAVPFLGILFSFLRWILVNALGAGLWAIVNIVQISPTLLAIPPVYAAIVEWLKSQKQPDSDNPQIAKYQKKIAEWLMAVFHDIGKFAAIAYVIELAVNLAYFAPYQGGWGAFLKDAPLWSVDKILFVQFALMIASICAVELLFRFVLTVWRLFRALR
>NZ_AP017308.1|WP_068384537.1|3147856_3148048_-|hypothetical-protein
MRRSFAIGLVGNEADSTWASVSVLACADSLRSHLSEIKNDKCDRFLLRESAKSVEFASAHDLG
>NZ_AP017308.1|WP_068384539.1|3148242_3148482_-|hypothetical-protein
MIIEGITTIAVYKFSQLIREEVEAMLGHNLEETRIYQDLEHQTKRKTAARLLRRGYSIENVAEDVDLPIGEVRRIAEEL
>NZ_AP017308.1|WP_068393183.1|3148545_3148944_-|PIN-domain-containing-protein
MKRTFLDAGVLILAARGNPIDSDLALSILGDIDREFVSSPFIQLEVIPKATYHKKQQELEFYEAFFATVSPWEINLENLLQEARQIACTYGLASIDALHIAAAISCKADEFITTEKPTKPMYRVPNLHFVSI
>NZ_AP017308.1|WP_068384541.1|3148940_3149192_-|hypothetical-protein
MTTEELVIQKLRELTPDQQQQVWEFVNALPKPQSSTPPEISPLGKKLRELRAQIVASGEPLLSREELDREIAERRGGVTPWDE
>NZ_AP017308.1|WP_068384544.1|3151320_3151743_-|hypothetical-protein
MAWQSYDLDRIAQKLVLNARARDPQSLNQSYKMRMAVAYGLERFWGEHLRLSGKEQKKSDYWKETWDELVIIMQRAGVTLPNDPVNLNDVKQVQAMSEKLWALRLEDQRIAIAVLTQLCDCIVWWTQRYKVGRLVDDSDS
>NZ_AP017308.1|WP_068384546.1|3151745_3152558_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MYTKRYGIIEALAPLHVGASAGEETGNLNLIFRDQFTQTGIIPGSSIRGRFRADMRQENPGEEHHWYGKAIKEGDSETTEAFVKFEYASIVWLPVFCPGQPVVWVTCPWLLKRYQKIAYDQSIAKASLPLPYSAPKGLGRQIGNNVTRTLFFNLGFIELEHEVDLSPWVHSSANLNPNNLVVVDDNDIAMIHDMSLFRQSRVKLSDTEKKVDGGGFFNVEALPEGTVMVFPIATRAQGWKPFNSSTSELYFGGLESIGFGRCHVTLSEGN
>NZ_AP017308.1|WP_068384548.1|3152589_3153651_-|hypothetical-protein
MFKYLIQIEPLGLLYGSAGRFLSPDNLVGRSGTRFPPSAAVVSGLFAATYGNAKVQDLQLSGAFWAQSNTPQNFYVPLPLNFTAYTPSHQQTLQAGHITAKLTWNEGWQSSREDLGKTNSGGWIAIDHWQTLTRSMSAIAQTNPPIYANPWKFLPHLHPRLQEKERRVVDPAENGGSLFLENSVQLHPEVCLVYLSNLPLESGWYRFGGEGHMVEVTCHDLSDSTQALFQQPVGQCFALITPAIWGSNRLSYRAPMIGAEEQWAVTTMLTERPMPFRYRLGDRMDEQGNKVRSAHQPKRLSRGRYAVPAGTVYVLQEPLKASWQDWSIDWFPKEGPSLKRWGCGLALPLEPFN
>NZ_AP017308.1|WP_068384550.1|3153643_3155329_-|hypothetical-protein
MTELPPIYTAITFAPIQGFIENSRKLRDLYGSSYLLSFLSWSVCHAAETQHFCIISPALTNVAQGLPNVILIKGKFEAETAQTAFNQAWRCVVETCRQWIETKLVTAPNGKHWHYHWQRDWSLWANYAWEFFCVHGQPGETLTQVKDKLTEIKRSRNWTGINWTGESSTLSGSDAIAYPELGRIADPRRYNYHEQKVKVEQFYQQLSQKLGEAFIDPREELSIPELIKRMITHGDVAQKVGDRLRQTLGESQPEQPDELDKLIRAIKEQLRPESFKELNRLKRKRDPYQPEYWTGWFQGDGDGAGNYLKTLDDQQVTEFSHEMRQWGCDLPKASLPGDSRIVYAGGDDFLGVLFAENYQLQAQKCLKFFTTFKPNVWDVPRKKPINVSVGFVWAGPKVPQREVLQHCREAEKIAKQQGRDRINFRILFNSGTYLEWACPWWVLERGLFEQYCDRSNTQKWVHFYNDVAVLESRHAFGTGTAINLEVTHALFKAYFGEKNDLLDEQYWWNQYDEHNHQTFAGILGNKESCPPNEINFALKDWMINLAKVGFHLHSEWGQSDV
>NZ_AP017308.1|WP_068384552.1|3155355_3155679_-|hypothetical-protein
MRSQRIGATKTFKHHWKLLAFPTNPISKDRRKLLTSSSPTLSTYRFQLIRSQRIGASFNHTSLQRFVFGFQLIRSHPIGNIGKIPIAFSKFYAKLLIFQELIATPPY
>NZ_AP017308.1|WP_068384555.1|3155731_3156166_+|hypothetical-protein
MRRDRSNFSTRSRFLLRFETSAQRNGLMTYRDILLQEIETASDEVLAEAIDFIRFLKTKSVAQASPDQASSDPAENSNLEQVNDPKAAFSTFLADVKQLPLRRAAPLRQETKGEDLSKFVGTWQGNDLEDCLRLVQETRSQSEF

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Crispr_ID: NZ_AP017308_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017308_8

3147939-3148195

TypeIII

Consensus_repeat	Method
GTTTCCAACTAATCCGATCGCAAAGGATCG	CRT
AGTTTCCAACTAATCCGATCGCAAAGGATCGACGTAAG	PILER-CR

3 spacers

cmr5gr11,cmr4gr7,cmr3gr5,cas10

The CRISPR arrays of NZ_AP017308_8

>merge|NZ_AP017308|8|3147939-3148195|CRT,PILER-CR
ATTTCTGACAGATGCGATCGCAAAGAATCGGCGCAAGCAAGTACGCTGACACTTGCCCAAGTCGAATCGGCTTCGTTTCCAACTAATCCGATCGCAAAGGATCGACGCAAACTCCATTCATCCCCGATCTTTAGATGCCTTACGAGTTTCCAACTAATCCGATCGCAATCGATCGGCGTAAGGACTCCCGATACTGGAGTGATTATGGATGGATTTAAGTTTCCAACTAATCCGATCGCAAAGGATCGATGTAAGCG

>NZ_AP017308|8|3|3147939-3148186|CRT
ATTTCTGACAGATGCGATCGCAAAGAATCG	GCGCAAGCAAGTACGCTGACACTTGCCCAAGTCGAATCGGCTTC
GTTTCCAACTAATCCGATCGCAAAGGATCG	ACGCAAACTCCATTCATCCCCGATCTTTAGATGCCTTACGA
GTTTCCAACTAATCCGATCGCAATCGATCG	GCGTAAGGACTCCCGATACTGGAGTGATTATGGATGGATTTAA
GTTTCCAACTAATCCGATCGCAAAGGATCG

>NZ_AP017308|8|4|3148013-3148195|PILER-CR
GTTTCCAACTAATCCGATCGCAAAGGATCGACGCAAACTC	CATTCATCCCCGATCTTTAGATGCCTTACGAGTTTCC
AACTAATCCGATCGCAATCGATCGGCGTAAGGACTCCCGA	TACTGGAGTGATTATGGATGGATTTAAGTTTCCAA
CTAATCCGATCGCAAAGGATCGATGTAAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017308.1\|WP_068384555.1\|3155731_3156166_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384541.1\|3148940_3149192_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384523.1\|3142638_3142908_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384531.1\|3145844_3146201_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384533.1\|3146206_3146419_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384519.1\|3139778_3141188_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384521.1\|3141592_3142639_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212669
NZ_AP017308.1\|WP_068384529.1\|3145246_3145852_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384525.1\|3143178_3143394_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384539.1\|3148242_3148482_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371375
NZ_AP017308.1\|WP_068384544.1\|3151320_3151743_-\|hypothetical-protein	cmr5gr11	mkCas0065_cmr5gr11_CAS-III-B	unknown
NZ_AP017308.1\|WP_068384527.1\|3143471_3144098_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384546.1\|3151745_3152558_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NZ_AP017308.1\|WP_068384552.1\|3155355_3155679_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384557.1\|3156174_3156618_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350229
NZ_AP017308.1\|WP_068384535.1\|3146476_3146938_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384550.1\|3153643_3155329_-\|hypothetical-protein	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NZ_AP017308.1\|WP_068384548.1\|3152589_3153651_-\|hypothetical-protein	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|370625
NZ_AP017308.1\|WP_068393183.1\|3148545_3148944_-\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350222
NZ_AP017308.1\|WP_068384517.1\|3138967_3139705_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP017308.1\|WP_068384539.1\|3148242_3148482_-\|hypothetical-protein	gnl\|CDD\|371375	pfam11103, DUF2887, Protein of unknown function (DUF2887). This bacterial family of proteins has no known function. These proteins may be distantly related to the PD(D/E)XK superfamily.	6.46324e-07
NZ_AP017308.1\|WP_068384546.1\|3151745_3152558_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	6.68966e-26
NZ_AP017308.1\|WP_068384557.1\|3156174_3156618_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350229	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins. This family includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This family belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	9.70666e-33
NZ_AP017308.1\|WP_068384550.1\|3153643_3155329_-\|hypothetical-protein	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	1.23172e-16
NZ_AP017308.1\|WP_068393183.1\|3148545_3148944_-\|PIN-domain-containing-protein	gnl\|CDD\|350222	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis CDC1551, hypothetical protein MT3492, and similar bacterial and archaeal proteins are included in this subfamily. They are PIN domain homologs of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	7.12766e-05
NZ_AP017308.1\|WP_068384548.1\|3152589_3153651_-\|hypothetical-protein	gnl\|CDD\|370625	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3). CRISPR is a term for Clustered Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family, found in at least ten different archaeal and bacterial species, is represented by TM1793 from Thermotoga maritima.	3.30695e-05
NZ_AP017308.1\|WP_068384521.1\|3141592_3142639_+\|hypothetical-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	6.94405e-08

>NZ_AP017308.1|WP_068384535.1|3146476_3146938_-|hypothetical-protein
MRSDGIAYTTAAQLEGVSHNAASDWLKRHPELKANVQAAQLHLRTQLAEKVQKAALEGAKTIVEKTRYDASGKPIESEKTVSTDDGIKYSQWLLARLDPENYSEKGKIEKLAQKRFSELLQYLLAGVSDVARAEIESHLLIAGIKVKPIEFSE
>NZ_AP017308.1|WP_068384533.1|3146206_3146419_-|hypothetical-protein
MNTTEEWTKLEQKFLKLADENIRQPKLAEHYLKMAARASQERIRGLQTAERKNTNRDRRLISIRKWANIN
>NZ_AP017308.1|WP_068384531.1|3145844_3146201_-|hypothetical-protein
MYINSKHCETRSYAPRFGAWKLIFTEPKTKTEITIGVYHNQKTLQEAAAWIDHCVHLLSVRDWINLVSENPLPFRKAMCGFLILLPKCECQGKQTDEGKPIHLHFLKAPVKTSDSTDV
>NZ_AP017308.1|WP_068384529.1|3145246_3145852_-|hypothetical-protein
MFRYSAIEWYELQKRFIREPETVSIRDYSFEVTGDDSYPLWEALEEKYREQEWDLIRDYHRTNAGEEVTIENSSAVKSALADVERVSNPLRAIARTIKFSQNVQSNVERALERAFLALESTSFGLESPADISKVLKDLAGIYQTMNGLERQVLGIKDPAELLKTSTDNDNEMTIDELSEHLTELGDQEIVMFLSELQKSND
>NZ_AP017308.1|WP_068384527.1|3143471_3144098_-|hypothetical-protein
MSKHLVSLGLLSALFNLSTVAYSQEYPTFKTKNETHAVLTKSLEAQYPGVPVLNKKDWRTAEDIPWSKIVIVKDDFDGDYVAVFDKNYQKDSTGSEAGIISNWSQNQIRVYAYGIRRQCGLFNLVCKELERKDLETGDLSIRVGEQVFKLVGKNGNYPMNPELATALRNAPSGKAKIRVTLEGSGSTITNDIGEKTVEAWKIVYKPSD
>NZ_AP017308.1|WP_068384525.1|3143178_3143394_+|hypothetical-protein
MRTQANEALRAFNLIHNVRAIAIIQDDFIRRNTRVFWWQKIQYQVLVSWLPTVVVELDEIDLEMMRIIEAR
>NZ_AP017308.1|WP_068384523.1|3142638_3142908_+|hypothetical-protein
MPSQKQRVSVTITDQLQKTLNTLWRNYPDLEGHVLESIQFLMIYGSEAIERDRKGLPTQEDNQTTGDITPLLKNPPEEPKFVSPADEWA
>NZ_AP017308.1|WP_068384521.1|3141592_3142639_+|hypothetical-protein
MQLTTVQDPTSLNKNANDRLLMAIDRGNSGTKIAVSINGIPLDPFKIPSVIRQVASNGVIEIGKNQYVCGDAAISMTVGSVSTPLRTGDKVEGLSIVIAQAVQKVSEIRSLSNVIEMDLIVSSPFASDKLVKQIKAELKTVTEGFKIDGNTYKITVGNVSVKFEGAVLLESAREFNGLIDIGFGTILAAYRGASGKVAIAPLMGGDLGGCNLVLNGLLNDPAFLAAVKKSGASAPPSAERLSSKLSEGITVLRNFDLKPLLKAHLKVLKTRIEDAALSVGTELRLSSENSDTIARIALVGGGAALMRMLLTEDQLTAWCKKHKLEVIDQPDYQTVMAMHQIAHTGGLN
>NZ_AP017308.1|WP_068384519.1|3139778_3141188_+|hypothetical-protein
MSNLVKHSEHRIIWTIGNTQIVDSEPDTGIVPLLKISALGIGAIVAAPVSPMIAVALFGYGAYKIFDLATSIGSDGANLAKDIYADVNGDETEDDSVPDGWVNLPQIEESEPVRIRTQLGEQSAIDVPVQPAKPIESPNGFGCILADPYQSRAFFGAQRTGKTYLAAVASREMSTRLGVKVFHMNLASFGTEDDHYWSHATESLRCDLSALDGYTAKQLTVRAIDLVKRFYATQNAILVVDEIAYLGSTGSEHREALEPLLRIIADKITTLSSSGKKRQQAVWTIAPEFVAGSLTQDAKAVKKLNLCYVSIHPQKTVDWNGQSIGFDWGLFNQIKANFTITDPTSVPNDDRICFVSGNWLPLGKLPTIEKVEKPNAVPQHSPKDVRAQLEKSFQSTDIEENDNSESAIRKEMIRFLAENPGGAKPRDFANRARSPVRRMPTEEIKLFLDVMVIDGEVLEVGESFFPNIN
>NZ_AP017308.1|WP_068384517.1|3138967_3139705_+|hypothetical-protein
MVKTTGTSQQSSNPQGSNQTYNSAHQEKAYNGYKSSAPSRNNRALLKFVEYSFYAIAGLLAFFSATPWIEVGHAIGSEIAATRLYNALVAVPFLGILFSFLRWILVNALGAGLWAIVNIVQISPTLLAIPPVYAAIVEWLKSQKQPDSDNPQIAKYQKKIAEWLMAVFHDIGKFAAIAYVIELAVNLAYFAPYQGGWGAFLKDAPLWSVDKILFVQFALMIASICAVELLFRFVLTVWRLFRALR
>NZ_AP017308.1|WP_068384539.1|3148242_3148482_-|hypothetical-protein
MIIEGITTIAVYKFSQLIREEVEAMLGHNLEETRIYQDLEHQTKRKTAARLLRRGYSIENVAEDVDLPIGEVRRIAEEL
>NZ_AP017308.1|WP_068393183.1|3148545_3148944_-|PIN-domain-containing-protein
MKRTFLDAGVLILAARGNPIDSDLALSILGDIDREFVSSPFIQLEVIPKATYHKKQQELEFYEAFFATVSPWEINLENLLQEARQIACTYGLASIDALHIAAAISCKADEFITTEKPTKPMYRVPNLHFVSI
>NZ_AP017308.1|WP_068384541.1|3148940_3149192_-|hypothetical-protein
MTTEELVIQKLRELTPDQQQQVWEFVNALPKPQSSTPPEISPLGKKLRELRAQIVASGEPLLSREELDREIAERRGGVTPWDE
>NZ_AP017308.1|WP_068384544.1|3151320_3151743_-|hypothetical-protein
MAWQSYDLDRIAQKLVLNARARDPQSLNQSYKMRMAVAYGLERFWGEHLRLSGKEQKKSDYWKETWDELVIIMQRAGVTLPNDPVNLNDVKQVQAMSEKLWALRLEDQRIAIAVLTQLCDCIVWWTQRYKVGRLVDDSDS
>NZ_AP017308.1|WP_068384546.1|3151745_3152558_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MYTKRYGIIEALAPLHVGASAGEETGNLNLIFRDQFTQTGIIPGSSIRGRFRADMRQENPGEEHHWYGKAIKEGDSETTEAFVKFEYASIVWLPVFCPGQPVVWVTCPWLLKRYQKIAYDQSIAKASLPLPYSAPKGLGRQIGNNVTRTLFFNLGFIELEHEVDLSPWVHSSANLNPNNLVVVDDNDIAMIHDMSLFRQSRVKLSDTEKKVDGGGFFNVEALPEGTVMVFPIATRAQGWKPFNSSTSELYFGGLESIGFGRCHVTLSEGN
>NZ_AP017308.1|WP_068384548.1|3152589_3153651_-|hypothetical-protein
MFKYLIQIEPLGLLYGSAGRFLSPDNLVGRSGTRFPPSAAVVSGLFAATYGNAKVQDLQLSGAFWAQSNTPQNFYVPLPLNFTAYTPSHQQTLQAGHITAKLTWNEGWQSSREDLGKTNSGGWIAIDHWQTLTRSMSAIAQTNPPIYANPWKFLPHLHPRLQEKERRVVDPAENGGSLFLENSVQLHPEVCLVYLSNLPLESGWYRFGGEGHMVEVTCHDLSDSTQALFQQPVGQCFALITPAIWGSNRLSYRAPMIGAEEQWAVTTMLTERPMPFRYRLGDRMDEQGNKVRSAHQPKRLSRGRYAVPAGTVYVLQEPLKASWQDWSIDWFPKEGPSLKRWGCGLALPLEPFN
>NZ_AP017308.1|WP_068384550.1|3153643_3155329_-|hypothetical-protein
MTELPPIYTAITFAPIQGFIENSRKLRDLYGSSYLLSFLSWSVCHAAETQHFCIISPALTNVAQGLPNVILIKGKFEAETAQTAFNQAWRCVVETCRQWIETKLVTAPNGKHWHYHWQRDWSLWANYAWEFFCVHGQPGETLTQVKDKLTEIKRSRNWTGINWTGESSTLSGSDAIAYPELGRIADPRRYNYHEQKVKVEQFYQQLSQKLGEAFIDPREELSIPELIKRMITHGDVAQKVGDRLRQTLGESQPEQPDELDKLIRAIKEQLRPESFKELNRLKRKRDPYQPEYWTGWFQGDGDGAGNYLKTLDDQQVTEFSHEMRQWGCDLPKASLPGDSRIVYAGGDDFLGVLFAENYQLQAQKCLKFFTTFKPNVWDVPRKKPINVSVGFVWAGPKVPQREVLQHCREAEKIAKQQGRDRINFRILFNSGTYLEWACPWWVLERGLFEQYCDRSNTQKWVHFYNDVAVLESRHAFGTGTAINLEVTHALFKAYFGEKNDLLDEQYWWNQYDEHNHQTFAGILGNKESCPPNEINFALKDWMINLAKVGFHLHSEWGQSDV
>NZ_AP017308.1|WP_068384552.1|3155355_3155679_-|hypothetical-protein
MRSQRIGATKTFKHHWKLLAFPTNPISKDRRKLLTSSSPTLSTYRFQLIRSQRIGASFNHTSLQRFVFGFQLIRSHPIGNIGKIPIAFSKFYAKLLIFQELIATPPY
>NZ_AP017308.1|WP_068384555.1|3155731_3156166_+|hypothetical-protein
MRRDRSNFSTRSRFLLRFETSAQRNGLMTYRDILLQEIETASDEVLAEAIDFIRFLKTKSVAQASPDQASSDPAENSNLEQVNDPKAAFSTFLADVKQLPLRRAAPLRQETKGEDLSKFVGTWQGNDLEDCLRLVQETRSQSEF
>NZ_AP017308.1|WP_068384557.1|3156174_3156618_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MYLLDTNHCSYIIDNDPRVIAEFRSRSEASFAISIITYGELLYMVEKSSQKAGNLRTVQSFLDTIGLYLLDEETGIIYSQLKIAIFNQFAPKDQAKRRKASIQTLGFDDNDLWIAATALQHNLTLVSADSDFTRMQQVCPLTLESWK

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Crispr_ID: NZ_AP017308_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017308_9

3149255-3149652

TypeIII

Consensus_repeat	Method
GTTTCCAACTAATCCGATCGCAAANGATCGGNGCAAG	CRT
GTTTCCAACTAATCCGATCGCAAAGGATCGGCGCAAG	PILER-CR

5 spacers

cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas14j

The CRISPR arrays of NZ_AP017308_9

>merge|NZ_AP017308|9|3149255-3149652|CRT,PILER-CR
CTTTGAAGAGAACGCGATCGCAAACGATCGGTGCAAGCTAGAAGCAAAGGACTTTCCAGAAATTCCGAATTTGTTTCCAACTAATCTGATCGCAAAGGATCGGCGCAAGTAGATATGGCTGTGAAAGAGAAGAAAACAATTGGTTTCCAACTAATCCGATCGCAAAGGATCGGCGCAAGCTAACTATTCCGCTGAGTTAACTCAGCGCTATATGGTTTCCAACTAATCCGATCGCAAAGGATCGGCGCAAGGAGCCGGTTTGCTTACTGAAAATGATTTGTCCCAGTACGTTTCCAACTAATCCGATCGCAAAGGATCGGCGCAAGGAATTCGAGATTTGGTCAAATCCTGACTATCTTCAGTTTCCAACTAATCCGATCGCAGAAATCGGCTCTCTC

>NZ_AP017308|9|4|3149255-3149652|CRT
CTTTGAAGAGAACGCGATCGCAAACGATCGGTGCAAG	CTAGAAGCAAAGGACTTTCCAGAAATTCCGAATTT
GTTTCCAACTAATCTGATCGCAAAGGATCGGCGCAAG	TAGATATGGCTGTGAAAGAGAAGAAAACAATTG
GTTTCCAACTAATCCGATCGCAAAGGATCGGCGCAAG	CTAACTATTCCGCTGAGTTAACTCAGCGCTATATG
GTTTCCAACTAATCCGATCGCAAAGGATCGGCGCAAG	GAGCCGGTTTGCTTACTGAAAATGATTTGTCCCAGTAC
GTTTCCAACTAATCCGATCGCAAAGGATCGGCGCAAG	GAATTCGAGATTTGGTCAAATCCTGACTATCTTCA
GTTTCCAACTAATCCGATCGCAGAAATCGGCTCTCTC

>NZ_AP017308|9|5|3149327-3149580|PILER-CR
GTTTCCAACTAATCTGATCGCAAAGGATCGGCGCAAG	TAGATATGGCTGTGAAAGAGAAGAAAACAATTG
GTTTCCAACTAATCCGATCGCAAAGGATCGGCGCAAG	CTAACTATTCCGCTGAGTTAACTCAGCGCTATATG
GTTTCCAACTAATCCGATCGCAAAGGATCGGCGCAAG	GAGCCGGTTTGCTTACTGAAAATGATTTGTCCCAGTAC
GTTTCCAACTAATCCGATCGCAAAGGATCGGCGCAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017308.1\|WP_068384555.1\|3155731_3156166_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384529.1\|3145246_3145852_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384561.1\|3158481_3159606_-\|transposase	cas14j	-	gnl\|CDD\|223747
NZ_AP017308.1\|WP_068384531.1\|3145844_3146201_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384533.1\|3146206_3146419_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384559.1\|3156725_3157184_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384537.1\|3147856_3148048_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384541.1\|3148940_3149192_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384525.1\|3143178_3143394_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384539.1\|3148242_3148482_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371375
NZ_AP017308.1\|WP_068384544.1\|3151320_3151743_-\|hypothetical-protein	cmr5gr11	mkCas0065_cmr5gr11_CAS-III-B	unknown
NZ_AP017308.1\|WP_068384527.1\|3143471_3144098_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384546.1\|3151745_3152558_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NZ_AP017308.1\|WP_068384552.1\|3155355_3155679_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384557.1\|3156174_3156618_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350229
NZ_AP017308.1\|WP_068384535.1\|3146476_3146938_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384550.1\|3153643_3155329_-\|hypothetical-protein	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NZ_AP017308.1\|WP_068384548.1\|3152589_3153651_-\|hypothetical-protein	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|370625
NZ_AP017308.1\|WP_068393183.1\|3148545_3148944_-\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350222
NZ_AP017308.1\|WP_071837133.1\|3159642_3159771_+\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP017308.1\|WP_068384539.1\|3148242_3148482_-\|hypothetical-protein	gnl\|CDD\|371375	pfam11103, DUF2887, Protein of unknown function (DUF2887). This bacterial family of proteins has no known function. These proteins may be distantly related to the PD(D/E)XK superfamily.	6.46324e-07
NZ_AP017308.1\|WP_068384546.1\|3151745_3152558_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	6.68966e-26
NZ_AP017308.1\|WP_068384557.1\|3156174_3156618_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350229	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins. This family includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This family belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	9.70666e-33
NZ_AP017308.1\|WP_068384550.1\|3153643_3155329_-\|hypothetical-protein	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	1.23172e-16
NZ_AP017308.1\|WP_068393183.1\|3148545_3148944_-\|PIN-domain-containing-protein	gnl\|CDD\|350222	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis CDC1551, hypothetical protein MT3492, and similar bacterial and archaeal proteins are included in this subfamily. They are PIN domain homologs of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	7.12766e-05
NZ_AP017308.1\|WP_068384548.1\|3152589_3153651_-\|hypothetical-protein	gnl\|CDD\|370625	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3). CRISPR is a term for Clustered Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family, found in at least ten different archaeal and bacterial species, is represented by TM1793 from Thermotoga maritima.	3.30695e-05
NZ_AP017308.1\|WP_068384561.1\|3158481_3159606_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.12342e-45

>NZ_AP017308.1|WP_068384541.1|3148940_3149192_-|hypothetical-protein
MTTEELVIQKLRELTPDQQQQVWEFVNALPKPQSSTPPEISPLGKKLRELRAQIVASGEPLLSREELDREIAERRGGVTPWDE
>NZ_AP017308.1|WP_068393183.1|3148545_3148944_-|PIN-domain-containing-protein
MKRTFLDAGVLILAARGNPIDSDLALSILGDIDREFVSSPFIQLEVIPKATYHKKQQELEFYEAFFATVSPWEINLENLLQEARQIACTYGLASIDALHIAAAISCKADEFITTEKPTKPMYRVPNLHFVSI
>NZ_AP017308.1|WP_068384539.1|3148242_3148482_-|hypothetical-protein
MIIEGITTIAVYKFSQLIREEVEAMLGHNLEETRIYQDLEHQTKRKTAARLLRRGYSIENVAEDVDLPIGEVRRIAEEL
>NZ_AP017308.1|WP_068384537.1|3147856_3148048_-|hypothetical-protein
MRRSFAIGLVGNEADSTWASVSVLACADSLRSHLSEIKNDKCDRFLLRESAKSVEFASAHDLG
>NZ_AP017308.1|WP_068384535.1|3146476_3146938_-|hypothetical-protein
MRSDGIAYTTAAQLEGVSHNAASDWLKRHPELKANVQAAQLHLRTQLAEKVQKAALEGAKTIVEKTRYDASGKPIESEKTVSTDDGIKYSQWLLARLDPENYSEKGKIEKLAQKRFSELLQYLLAGVSDVARAEIESHLLIAGIKVKPIEFSE
>NZ_AP017308.1|WP_068384533.1|3146206_3146419_-|hypothetical-protein
MNTTEEWTKLEQKFLKLADENIRQPKLAEHYLKMAARASQERIRGLQTAERKNTNRDRRLISIRKWANIN
>NZ_AP017308.1|WP_068384531.1|3145844_3146201_-|hypothetical-protein
MYINSKHCETRSYAPRFGAWKLIFTEPKTKTEITIGVYHNQKTLQEAAAWIDHCVHLLSVRDWINLVSENPLPFRKAMCGFLILLPKCECQGKQTDEGKPIHLHFLKAPVKTSDSTDV
>NZ_AP017308.1|WP_068384529.1|3145246_3145852_-|hypothetical-protein
MFRYSAIEWYELQKRFIREPETVSIRDYSFEVTGDDSYPLWEALEEKYREQEWDLIRDYHRTNAGEEVTIENSSAVKSALADVERVSNPLRAIARTIKFSQNVQSNVERALERAFLALESTSFGLESPADISKVLKDLAGIYQTMNGLERQVLGIKDPAELLKTSTDNDNEMTIDELSEHLTELGDQEIVMFLSELQKSND
>NZ_AP017308.1|WP_068384527.1|3143471_3144098_-|hypothetical-protein
MSKHLVSLGLLSALFNLSTVAYSQEYPTFKTKNETHAVLTKSLEAQYPGVPVLNKKDWRTAEDIPWSKIVIVKDDFDGDYVAVFDKNYQKDSTGSEAGIISNWSQNQIRVYAYGIRRQCGLFNLVCKELERKDLETGDLSIRVGEQVFKLVGKNGNYPMNPELATALRNAPSGKAKIRVTLEGSGSTITNDIGEKTVEAWKIVYKPSD
>NZ_AP017308.1|WP_068384525.1|3143178_3143394_+|hypothetical-protein
MRTQANEALRAFNLIHNVRAIAIIQDDFIRRNTRVFWWQKIQYQVLVSWLPTVVVELDEIDLEMMRIIEAR
>NZ_AP017308.1|WP_068384544.1|3151320_3151743_-|hypothetical-protein
MAWQSYDLDRIAQKLVLNARARDPQSLNQSYKMRMAVAYGLERFWGEHLRLSGKEQKKSDYWKETWDELVIIMQRAGVTLPNDPVNLNDVKQVQAMSEKLWALRLEDQRIAIAVLTQLCDCIVWWTQRYKVGRLVDDSDS
>NZ_AP017308.1|WP_068384546.1|3151745_3152558_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MYTKRYGIIEALAPLHVGASAGEETGNLNLIFRDQFTQTGIIPGSSIRGRFRADMRQENPGEEHHWYGKAIKEGDSETTEAFVKFEYASIVWLPVFCPGQPVVWVTCPWLLKRYQKIAYDQSIAKASLPLPYSAPKGLGRQIGNNVTRTLFFNLGFIELEHEVDLSPWVHSSANLNPNNLVVVDDNDIAMIHDMSLFRQSRVKLSDTEKKVDGGGFFNVEALPEGTVMVFPIATRAQGWKPFNSSTSELYFGGLESIGFGRCHVTLSEGN
>NZ_AP017308.1|WP_068384548.1|3152589_3153651_-|hypothetical-protein
MFKYLIQIEPLGLLYGSAGRFLSPDNLVGRSGTRFPPSAAVVSGLFAATYGNAKVQDLQLSGAFWAQSNTPQNFYVPLPLNFTAYTPSHQQTLQAGHITAKLTWNEGWQSSREDLGKTNSGGWIAIDHWQTLTRSMSAIAQTNPPIYANPWKFLPHLHPRLQEKERRVVDPAENGGSLFLENSVQLHPEVCLVYLSNLPLESGWYRFGGEGHMVEVTCHDLSDSTQALFQQPVGQCFALITPAIWGSNRLSYRAPMIGAEEQWAVTTMLTERPMPFRYRLGDRMDEQGNKVRSAHQPKRLSRGRYAVPAGTVYVLQEPLKASWQDWSIDWFPKEGPSLKRWGCGLALPLEPFN
>NZ_AP017308.1|WP_068384550.1|3153643_3155329_-|hypothetical-protein
MTELPPIYTAITFAPIQGFIENSRKLRDLYGSSYLLSFLSWSVCHAAETQHFCIISPALTNVAQGLPNVILIKGKFEAETAQTAFNQAWRCVVETCRQWIETKLVTAPNGKHWHYHWQRDWSLWANYAWEFFCVHGQPGETLTQVKDKLTEIKRSRNWTGINWTGESSTLSGSDAIAYPELGRIADPRRYNYHEQKVKVEQFYQQLSQKLGEAFIDPREELSIPELIKRMITHGDVAQKVGDRLRQTLGESQPEQPDELDKLIRAIKEQLRPESFKELNRLKRKRDPYQPEYWTGWFQGDGDGAGNYLKTLDDQQVTEFSHEMRQWGCDLPKASLPGDSRIVYAGGDDFLGVLFAENYQLQAQKCLKFFTTFKPNVWDVPRKKPINVSVGFVWAGPKVPQREVLQHCREAEKIAKQQGRDRINFRILFNSGTYLEWACPWWVLERGLFEQYCDRSNTQKWVHFYNDVAVLESRHAFGTGTAINLEVTHALFKAYFGEKNDLLDEQYWWNQYDEHNHQTFAGILGNKESCPPNEINFALKDWMINLAKVGFHLHSEWGQSDV
>NZ_AP017308.1|WP_068384552.1|3155355_3155679_-|hypothetical-protein
MRSQRIGATKTFKHHWKLLAFPTNPISKDRRKLLTSSSPTLSTYRFQLIRSQRIGASFNHTSLQRFVFGFQLIRSHPIGNIGKIPIAFSKFYAKLLIFQELIATPPY
>NZ_AP017308.1|WP_068384555.1|3155731_3156166_+|hypothetical-protein
MRRDRSNFSTRSRFLLRFETSAQRNGLMTYRDILLQEIETASDEVLAEAIDFIRFLKTKSVAQASPDQASSDPAENSNLEQVNDPKAAFSTFLADVKQLPLRRAAPLRQETKGEDLSKFVGTWQGNDLEDCLRLVQETRSQSEF
>NZ_AP017308.1|WP_068384557.1|3156174_3156618_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MYLLDTNHCSYIIDNDPRVIAEFRSRSEASFAISIITYGELLYMVEKSSQKAGNLRTVQSFLDTIGLYLLDEETGIIYSQLKIAIFNQFAPKDQAKRRKASIQTLGFDDNDLWIAATALQHNLTLVSADSDFTRMQQVCPLTLESWK
>NZ_AP017308.1|WP_068384559.1|3156725_3157184_-|hypothetical-protein
MNNVRRVLDRERIIGSAVVDYYLPSGGTEPIGKKLLGERGFDQVRFWNRDTLGTLPNSQFADVIVLDLINSQVFPPQVTQQEKEAIVESHIKKVKPLLASYSALVFYVKGGRIDVIDNSGLRYYIPANGAVALIGAVSDSAYVAYGQKQLRN
>NZ_AP017308.1|WP_068384561.1|3158481_3159606_-|transposase
MKTLKFKLYQSKRNRHLKRSINAAGVIYNHCIALHKRYYRIWGKHLNCSKLQSHIAKLRKRKAFWQTVGSQAVQDICQRIEKAYQLFFKHHKKGVRPPGFKKVRRYKSFTLKQAGYKFLGGNRIKIGNRVFQYWNSRAIEGTVKTLTIKRTPLGELFMVIVVDSVEESESKFETSRIAGFDFGLKTFLTGSDGTTIESPQFLKQSLNAIKKASRQHSKKRSCSANREQARLNLVRKHEDVCNRRSDWFWKLAHKLTDKFDVLCFETLNLKGMQRLWGRKISDLAFGEFIQILEWVAKKKDKQAIFIDQWYPSSKTCSHCGHVLKELDLNTREWRCPSCQSVNGRDENAAKNICAVGASTAKVGDVRQALPAIAV
>NZ_AP017308.1|WP_071837133.1|3159642_3159771_+|ribbon-helix-helix-protein,-CopG-family
MKTITLRCSDEEYELLSKYCKKKERSLNDVLRELIRSLNSAD

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Crispr_ID: NZ_AP017308_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017308_10

3155436-3155691

TypeIII

Consensus_repeat	Method
AGCTTGCGCCGATCCTTTGAGATCGGATTAGTTGGAAACG	CRISPRCasFinder
CGTTTCCAACTAATCCGATCTCAAAGGATCGGCGCAA	PILER-CR

3 spacers

cas10,cmr3gr5,cmr4gr7,cmr5gr11,cas14j

The CRISPR arrays of NZ_AP017308_10

>merge|NZ_AP017308|10|3155436-3155691|CRISPRCasFinder,PILER-CR
CTATGTTTCCGATCGGATGCGATCGGATTAGTTGGAAACCAAACACGAATCGTTGCAGAGATGTATGGTTGAAGCTTGCGCCGATCCTTTGAGATCGGATTAGTTGGAAACGGTACGTGCTCAAAGTGGGGCTTGACGAAGTTAAGAGCTTGCGCCGATCCTTTGAGATCGGATTAGTTGGAAACGCTAACAGTTTCCAGTGATGTTTGAATGTTTTGGTTGCGCCGATCCTTTGCGATCGCATTAGTTGGAAACG

>NZ_AP017308|10|8|3155436-3155691|CRISPRCasFinder
CTATGTTTCCGATCGGATGCGATCGGATTAGTTGGAAACC	AAACACGAATCGTTGCAGAGATGTATGGTTGA
AGCTTGCGCCGATCCTTTGAGATCGGATTAGTTGGAAACG	GTACGTGCTCAAAGTGGGGCTTGACGAAGTTAAG
AGCTTGCGCCGATCCTTTGAGATCGGATTAGTTGGAAACG	CTAACAGTTTCCAGTGATGTTTGAATGTTT
TGGTTGCGCCGATCCTTTGCGATCGCATTAGTTGGAAACG

>NZ_AP017308|10|6|3155511-3155691|PILER-CR
TTGCGCCGATCCTTTGAGATCGGATTAGTTGGAAACG	GTACGTGCTCAAAGTGGGGCTTGACGAAGTTAAGAGC
TTGCGCCGATCCTTTGAGATCGGATTAGTTGGAAACG	CTAACAGTTTCCAGTGATGTTTGAATGTTTTGG
TTGCGCCGATCCTTTGCGATCGCATTAGTTGGAAACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017308.1\|WP_068384555.1\|3155731_3156166_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384568.1\|3161434_3161860_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384561.1\|3158481_3159606_-\|transposase	cas14j	-	gnl\|CDD\|223747
NZ_AP017308.1\|WP_068384566.1\|3160927_3161407_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271175
NZ_AP017308.1\|WP_068384546.1\|3151745_3152558_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NZ_AP017308.1\|WP_068384533.1\|3146206_3146419_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384570.1\|3163227_3166128_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384559.1\|3156725_3157184_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384537.1\|3147856_3148048_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384541.1\|3148940_3149192_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384539.1\|3148242_3148482_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371375
NZ_AP017308.1\|WP_068384544.1\|3151320_3151743_-\|hypothetical-protein	cmr5gr11	mkCas0065_cmr5gr11_CAS-III-B	unknown
NZ_AP017308.1\|WP_068393183.1\|3148545_3148944_-\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350222
NZ_AP017308.1\|WP_068384557.1\|3156174_3156618_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350229
NZ_AP017308.1\|WP_068384535.1\|3146476_3146938_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384550.1\|3153643_3155329_-\|hypothetical-protein	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NZ_AP017308.1\|WP_071837133.1\|3159642_3159771_+\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384572.1\|3166218_3166593_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068384548.1\|3152589_3153651_-\|hypothetical-protein	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|370625
NZ_AP017308.1\|WP_068379386.1\|3162121_3163243_+\|transposase	unknown	unknown	gnl\|CDD\|376573

Protein	Function_ID	Function_description	E-value
NZ_AP017308.1\|WP_068384539.1\|3148242_3148482_-\|hypothetical-protein	gnl\|CDD\|371375	pfam11103, DUF2887, Protein of unknown function (DUF2887). This bacterial family of proteins has no known function. These proteins may be distantly related to the PD(D/E)XK superfamily.	6.46324e-07
NZ_AP017308.1\|WP_068384546.1\|3151745_3152558_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	6.68966e-26
NZ_AP017308.1\|WP_068384566.1\|3160927_3161407_-\|hypothetical-protein	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	0.00268637
NZ_AP017308.1\|WP_068384557.1\|3156174_3156618_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350229	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins. This family includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This family belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	9.70666e-33
NZ_AP017308.1\|WP_068384550.1\|3153643_3155329_-\|hypothetical-protein	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	1.23172e-16
NZ_AP017308.1\|WP_068379386.1\|3162121_3163243_+\|transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	3.73352e-08
NZ_AP017308.1\|WP_068384548.1\|3152589_3153651_-\|hypothetical-protein	gnl\|CDD\|370625	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3). CRISPR is a term for Clustered Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family, found in at least ten different archaeal and bacterial species, is represented by TM1793 from Thermotoga maritima.	3.30695e-05
NZ_AP017308.1\|WP_068393183.1\|3148545_3148944_-\|PIN-domain-containing-protein	gnl\|CDD\|350222	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis CDC1551, hypothetical protein MT3492, and similar bacterial and archaeal proteins are included in this subfamily. They are PIN domain homologs of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	7.12766e-05
NZ_AP017308.1\|WP_068384561.1\|3158481_3159606_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.12342e-45

>NZ_AP017308.1|WP_068384550.1|3153643_3155329_-|hypothetical-protein
MTELPPIYTAITFAPIQGFIENSRKLRDLYGSSYLLSFLSWSVCHAAETQHFCIISPALTNVAQGLPNVILIKGKFEAETAQTAFNQAWRCVVETCRQWIETKLVTAPNGKHWHYHWQRDWSLWANYAWEFFCVHGQPGETLTQVKDKLTEIKRSRNWTGINWTGESSTLSGSDAIAYPELGRIADPRRYNYHEQKVKVEQFYQQLSQKLGEAFIDPREELSIPELIKRMITHGDVAQKVGDRLRQTLGESQPEQPDELDKLIRAIKEQLRPESFKELNRLKRKRDPYQPEYWTGWFQGDGDGAGNYLKTLDDQQVTEFSHEMRQWGCDLPKASLPGDSRIVYAGGDDFLGVLFAENYQLQAQKCLKFFTTFKPNVWDVPRKKPINVSVGFVWAGPKVPQREVLQHCREAEKIAKQQGRDRINFRILFNSGTYLEWACPWWVLERGLFEQYCDRSNTQKWVHFYNDVAVLESRHAFGTGTAINLEVTHALFKAYFGEKNDLLDEQYWWNQYDEHNHQTFAGILGNKESCPPNEINFALKDWMINLAKVGFHLHSEWGQSDV
>NZ_AP017308.1|WP_068384548.1|3152589_3153651_-|hypothetical-protein
MFKYLIQIEPLGLLYGSAGRFLSPDNLVGRSGTRFPPSAAVVSGLFAATYGNAKVQDLQLSGAFWAQSNTPQNFYVPLPLNFTAYTPSHQQTLQAGHITAKLTWNEGWQSSREDLGKTNSGGWIAIDHWQTLTRSMSAIAQTNPPIYANPWKFLPHLHPRLQEKERRVVDPAENGGSLFLENSVQLHPEVCLVYLSNLPLESGWYRFGGEGHMVEVTCHDLSDSTQALFQQPVGQCFALITPAIWGSNRLSYRAPMIGAEEQWAVTTMLTERPMPFRYRLGDRMDEQGNKVRSAHQPKRLSRGRYAVPAGTVYVLQEPLKASWQDWSIDWFPKEGPSLKRWGCGLALPLEPFN
>NZ_AP017308.1|WP_068384546.1|3151745_3152558_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MYTKRYGIIEALAPLHVGASAGEETGNLNLIFRDQFTQTGIIPGSSIRGRFRADMRQENPGEEHHWYGKAIKEGDSETTEAFVKFEYASIVWLPVFCPGQPVVWVTCPWLLKRYQKIAYDQSIAKASLPLPYSAPKGLGRQIGNNVTRTLFFNLGFIELEHEVDLSPWVHSSANLNPNNLVVVDDNDIAMIHDMSLFRQSRVKLSDTEKKVDGGGFFNVEALPEGTVMVFPIATRAQGWKPFNSSTSELYFGGLESIGFGRCHVTLSEGN
>NZ_AP017308.1|WP_068384544.1|3151320_3151743_-|hypothetical-protein
MAWQSYDLDRIAQKLVLNARARDPQSLNQSYKMRMAVAYGLERFWGEHLRLSGKEQKKSDYWKETWDELVIIMQRAGVTLPNDPVNLNDVKQVQAMSEKLWALRLEDQRIAIAVLTQLCDCIVWWTQRYKVGRLVDDSDS
>NZ_AP017308.1|WP_068384541.1|3148940_3149192_-|hypothetical-protein
MTTEELVIQKLRELTPDQQQQVWEFVNALPKPQSSTPPEISPLGKKLRELRAQIVASGEPLLSREELDREIAERRGGVTPWDE
>NZ_AP017308.1|WP_068393183.1|3148545_3148944_-|PIN-domain-containing-protein
MKRTFLDAGVLILAARGNPIDSDLALSILGDIDREFVSSPFIQLEVIPKATYHKKQQELEFYEAFFATVSPWEINLENLLQEARQIACTYGLASIDALHIAAAISCKADEFITTEKPTKPMYRVPNLHFVSI
>NZ_AP017308.1|WP_068384539.1|3148242_3148482_-|hypothetical-protein
MIIEGITTIAVYKFSQLIREEVEAMLGHNLEETRIYQDLEHQTKRKTAARLLRRGYSIENVAEDVDLPIGEVRRIAEEL
>NZ_AP017308.1|WP_068384537.1|3147856_3148048_-|hypothetical-protein
MRRSFAIGLVGNEADSTWASVSVLACADSLRSHLSEIKNDKCDRFLLRESAKSVEFASAHDLG
>NZ_AP017308.1|WP_068384535.1|3146476_3146938_-|hypothetical-protein
MRSDGIAYTTAAQLEGVSHNAASDWLKRHPELKANVQAAQLHLRTQLAEKVQKAALEGAKTIVEKTRYDASGKPIESEKTVSTDDGIKYSQWLLARLDPENYSEKGKIEKLAQKRFSELLQYLLAGVSDVARAEIESHLLIAGIKVKPIEFSE
>NZ_AP017308.1|WP_068384533.1|3146206_3146419_-|hypothetical-protein
MNTTEEWTKLEQKFLKLADENIRQPKLAEHYLKMAARASQERIRGLQTAERKNTNRDRRLISIRKWANIN
>NZ_AP017308.1|WP_068384555.1|3155731_3156166_+|hypothetical-protein
MRRDRSNFSTRSRFLLRFETSAQRNGLMTYRDILLQEIETASDEVLAEAIDFIRFLKTKSVAQASPDQASSDPAENSNLEQVNDPKAAFSTFLADVKQLPLRRAAPLRQETKGEDLSKFVGTWQGNDLEDCLRLVQETRSQSEF
>NZ_AP017308.1|WP_068384557.1|3156174_3156618_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MYLLDTNHCSYIIDNDPRVIAEFRSRSEASFAISIITYGELLYMVEKSSQKAGNLRTVQSFLDTIGLYLLDEETGIIYSQLKIAIFNQFAPKDQAKRRKASIQTLGFDDNDLWIAATALQHNLTLVSADSDFTRMQQVCPLTLESWK
>NZ_AP017308.1|WP_068384559.1|3156725_3157184_-|hypothetical-protein
MNNVRRVLDRERIIGSAVVDYYLPSGGTEPIGKKLLGERGFDQVRFWNRDTLGTLPNSQFADVIVLDLINSQVFPPQVTQQEKEAIVESHIKKVKPLLASYSALVFYVKGGRIDVIDNSGLRYYIPANGAVALIGAVSDSAYVAYGQKQLRN
>NZ_AP017308.1|WP_068384561.1|3158481_3159606_-|transposase
MKTLKFKLYQSKRNRHLKRSINAAGVIYNHCIALHKRYYRIWGKHLNCSKLQSHIAKLRKRKAFWQTVGSQAVQDICQRIEKAYQLFFKHHKKGVRPPGFKKVRRYKSFTLKQAGYKFLGGNRIKIGNRVFQYWNSRAIEGTVKTLTIKRTPLGELFMVIVVDSVEESESKFETSRIAGFDFGLKTFLTGSDGTTIESPQFLKQSLNAIKKASRQHSKKRSCSANREQARLNLVRKHEDVCNRRSDWFWKLAHKLTDKFDVLCFETLNLKGMQRLWGRKISDLAFGEFIQILEWVAKKKDKQAIFIDQWYPSSKTCSHCGHVLKELDLNTREWRCPSCQSVNGRDENAAKNICAVGASTAKVGDVRQALPAIAV
>NZ_AP017308.1|WP_071837133.1|3159642_3159771_+|ribbon-helix-helix-protein,-CopG-family
MKTITLRCSDEEYELLSKYCKKKERSLNDVLRELIRSLNSAD
>NZ_AP017308.1|WP_068384566.1|3160927_3161407_-|hypothetical-protein
MEFEPSETYEGEERSRGPVWRWGYLFPMPETGKVGDGTVFGGSFLRTSYQLIGKRITPHLIRNFWATWAFQVKLTEAEVSSLAFAMGHSVQTLKDIYERCTEQEKARPIYEAIDRHLFQPLKQVSELTETDVDPLQIVEALRKLSVEERRKVIRLADAS
>NZ_AP017308.1|WP_068384568.1|3161434_3161860_-|hypothetical-protein
MKWALVTDLPTRRQRVYRLCKIALSCPLQRPESVPLDGCYFPLPPHGIREKNHDGTLADNYLCKVYAHKDRVYPEKVWLLQICADKTDDVYGVYMMEIHNRAFEDGTYFYDYVERYLCGCWGSGKFSDRQVYDWWDTKLQA
>NZ_AP017308.1|WP_068379386.1|3162121_3163243_+|transposase
MPSAYQKASLNALFGLFLEALGHPLPQSTQVKSASSLSRFLNHYSWSTRSVIRATRKAIFDQLRQHPSRRDLPLRVLIDLTTLEKCGKFLHLSTPTQNPDAPDPWVRMLNSKRGLHLVVLYLNLGNWRIPWSFRVWRGKGQASPAQLACKLLATVPTDLAAGAPVIVLADTEFGTIDFLKAVKHRRWRAVVGMRCTRKLQDGRNLKQLYRHNRRGAQIKLDGIDFPLTVSWFWLRLADGKRELRFVVSTYPYSGVYLVRLGRKRWAIEAFFKTIKHRFGLHRFGQSTKQGVYRWLILALIAYLLVHWIYQSSLLPQLDWKVASDLALSILFPSVLWFQFLRYLQEAVPIAAGYQFEIVLKSLPNPAYQEWCKI
>NZ_AP017308.1|WP_068384570.1|3163227_3166128_+|hypothetical-protein
MVQDLRSSKLFDQAQDLMHQLGESGFEKRKHQWSGTAGHKRGSCTFHHSKSNSAWLSNQSGKVTFHCPTCTGGKPLDVFGYWLSDRYGYIIDQCPRGKEWVELAKQFLFDHGITPIEQLRPHSRQHFKICTDAKPSQSESSDRDLLIQERHSRFLTYWKKLQNDFLLLKIVNNSTVRFVQYEGYAPSLDLFSDTTFLQGWLGTGKTETILKSLKEQFSSHTVVWVAPRNGLFKQTAERAKQLGFDTYHYQDDAALHRRMLLTQQAGIYLLSPDSFKVYAVGNMKWENAILVFDEFSGIRKELLHKTSEYPQVLDAIKRCNMLIVADAFLSQIDTKVIQKIRPADSEDIISQKFSKSSVKISWIETRNKAGDISFDHSGSYYELLDRWIEQKTHKIAIATDSVLIAKLLNRYLQAKGVRTWLVCSETPEENSSFMPDPNSVIRDGKIEAVIYTPTAQSGLDIQSKFDRGLLISTGVLPPTQMLQMAGRCRHCLEWFVSAPRRSNNFTTIAPSLNGKKVQRWAEDLKQLCKELELCTDSRVQTWAIWERLVQDIEKAFNSEYLQELLQYFFESVTTVELSSNRIVQWRRDADALKSEEAEQMLNANLQSGLLLLDAQKQPVLNSQVWEIKLVELSLKYAKPIEKLLSAFNDTIPEITISNGKLKKLGSVEAVRERLKLLESDTPDFLEAIEYHVQEFNVATRIYAEEQNSETELRVEDAEKALTKARFRLTENQGEIERLSSALGLSVRSRQANAIKLIRLFSSSRLERLKNWVMANEANEQDDRDLIAYLQQRSTHCNASKFKLLQNLELFRSLKLDRLAVIRNDKEAQANVTAFRCQSPIISEIWLEFCQNPKLMKLFPTVNSQYESWLKVKACLAYFGYQKRGKRIRITTGTSHPNGKYRNGEKRSSNSQSLHFVYWFVMEASGSALFQQNFDLIIEAIRDRLVVEREERRKWKEKGPPPDWGAT
>NZ_AP017308.1|WP_068384572.1|3166218_3166593_+|hypothetical-protein
MSQEAEQFIAQILLNQHTIMTQLRALTEQLNGHPSVGQGWMRTSEAALALKSDGVLNARHLRKLQVDKVFSEKNGEIRNVSKGTEKARWEYHVPKCRAALQRHFKGIAKYAEAAKRKRVQQEKR

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Crispr_ID: NZ_AP017308_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017308_11

3479425-3479608

TypeI-D

Consensus_repeat	Method
CTTTCGCGACTGCTAATCCCGGCAACGGGACTGAAAC	CRISPRCasFinder

2 spacers

cas2,cas1,cas4,cas6,csc1gr5,csc2gr7,cas10d

The CRISPR arrays of NZ_AP017308_11

>merge|NZ_AP017308|11|3479425-3479608|CRISPRCasFinder
CTTTCGCGACTGCTAATCCCGGCAACGGGACTGAAACGATCCTGAAAAGTTACAGAAACTTTTAACGCTCGAACTTTCGCGACTGCTAATCCCGGCAACGGGACTGAAACAGTCGAAGCAATTTATATAAGCGGAATCAACGCTCTGCTTTCGCGACTGCTAATCCCGGCAACGGGACTGAAAC

>NZ_AP017308|11|9|3479425-3479608|CRISPRCasFinder
CTTTCGCGACTGCTAATCCCGGCAACGGGACTGAAAC	GATCCTGAAAAGTTACAGAAACTTTTAACGCTCGAA
CTTTCGCGACTGCTAATCCCGGCAACGGGACTGAAAC	AGTCGAAGCAATTTATATAAGCGGAATCAACGCTCTG
CTTTCGCGACTGCTAATCCCGGCAACGGGACTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017308.1\|WP_068385374.1\|3470529_3470991_+\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|366864
NZ_AP017308.1\|WP_068385409.1\|3482515_3483631_-\|anhydro-N-acetylmuramic-acid-kinase	unknown	unknown	gnl\|CDD\|236579
NZ_AP017308.1\|WP_068385391.1\|3477431_3478409_+\|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
NZ_AP017308.1\|WP_068385399.1\|3479697_3480303_-\|low-complexity-tail-membrane-protein	unknown	unknown	gnl\|CDD\|380188
NZ_AP017308.1\|WP_068385383.1\|3475343_3476051_+\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	csc1gr5	cd09711_csc1gr5_CAS-I-D	gnl\|CDD\|187842
NZ_AP017308.1\|WP_068385415.1\|3486445_3487003_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NZ_AP017308.1\|WP_068385412.1\|3483635_3484631_-\|aspartate-carbamoyltransferase-catalytic-subunit	unknown	unknown	gnl\|CDD\|234849
NZ_AP017308.1\|WP_071837140.1\|3482022_3482469_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068385418.1\|3487177_3488029_+\|DUF559-domain-containing-protein	unknown	unknown	gnl\|CDD\|225408
NZ_AP017308.1\|WP_068385371.1\|3469840_3470533_+\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376187
NZ_AP017308.1\|WP_068385389.1\|3476851_3477430_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_AP017308.1\|WP_084762031.1\|3478874_3479222_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_AP017308.1\|WP_068385403.1\|3480403_3480622_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068385394.1\|3478478_3478853_+\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|319869
NZ_AP017308.1\|WP_068393241.1\|3480901_3481969_+\|threonine-synthase	unknown	unknown	gnl\|CDD\|236013
NZ_AP017308.1\|WP_068385377.1\|3470974_3474319_+\|type-I-D-CRISPR-associated-protein-Cas10d/Csc3	cas10d	cd09712_cas10d_CAS-I-D	gnl\|CDD\|274469
NZ_AP017308.1\|WP_068385420.1\|3488344_3488626_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068385380.1\|3474329_3475337_+\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	csc2gr7	cd09709_csc2gr7_CAS-I-D	gnl\|CDD\|375747
NZ_AP017308.1\|WP_068393244.1\|3485373_3485715_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068385386.1\|3476054_3476855_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838

Protein	Function_ID	Function_description	E-value
NZ_AP017308.1\|WP_068385374.1\|3470529_3470991_+\|DUF86-domain-containing-protein	gnl\|CDD\|366864	pfam01934, DUF86, Protein of unknown function DUF86. The function of members of this family is unknown.	1.66926e-16
NZ_AP017308.1\|WP_068385409.1\|3482515_3483631_-\|anhydro-N-acetylmuramic-acid-kinase	gnl\|CDD\|236579	PRK09585, anmK, anhydro-N-acetylmuramic acid kinase; Reviewed.	0
NZ_AP017308.1\|WP_068385391.1\|3477431_3478409_+\|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	8.97293e-146
NZ_AP017308.1\|WP_068385399.1\|3479697_3480303_-\|low-complexity-tail-membrane-protein	gnl\|CDD\|380188	NF033183, colliding_TM, low-complexity tail membrane protein. Members of this family appear typically as an unusual gene pair with members of PF11998 (DUF3493). Strangely, members tend to have tail-to-tail overlapping regions, where the tail region from this protein is long, low-complexity, and typically rich in Asp, Glu, Asn, Gln, Ser, and Thr. These gene pairs occur broadly in Cyanobacteria. The function of this pair of convergently-transcribed overlapping proteins is unknown. The low-complexity region was trimmed from the seed alignment to build this HMM.	1.25985e-67
NZ_AP017308.1\|WP_068385383.1\|3475343_3476051_+\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	gnl\|CDD\|187842	cd09711, Csc1_I-D, CRISPR/Cas system-associated protein Csc1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog; also known as CasA/Cse1 family.	9.51287e-67
NZ_AP017308.1\|WP_068385415.1\|3486445_3487003_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.60134e-32
NZ_AP017308.1\|WP_068385418.1\|3487177_3488029_+\|DUF559-domain-containing-protein	gnl\|CDD\|225408	COG2852, COG2852, Very-short-patch-repair endonuclease [Replication, recombination, and repair].	0.00437601
NZ_AP017308.1\|WP_068385371.1\|3469840_3470533_+\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	4.25193e-15
NZ_AP017308.1\|WP_068385389.1\|3476851_3477430_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.91417e-34
NZ_AP017308.1\|WP_084762031.1\|3478874_3479222_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.11439e-28
NZ_AP017308.1\|WP_068385412.1\|3483635_3484631_-\|aspartate-carbamoyltransferase-catalytic-subunit	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	4.3156e-177
NZ_AP017308.1\|WP_068385394.1\|3478478_3478853_+\|four-helix-bundle-protein	gnl\|CDD\|319869	cd16377, 23S_rRNA_IVP_like, 23S rRNA-intervening sequence protein and similar proteins. A family of functionally uncharacterized bacterial proteins, some of which are encoded by an atypically large intervening sequence present within some 23S rRNA genes. The distantly related bAvd protein, which also forms a homopentamer of four-helix bundles, has been suggested to interact with nucleic acids and a reverse transcriptase.	2.78651e-52
NZ_AP017308.1\|WP_068393241.1\|3480901_3481969_+\|threonine-synthase	gnl\|CDD\|236013	PRK07409, PRK07409, threonine synthase; Validated.	0
NZ_AP017308.1\|WP_068385377.1\|3470974_3474319_+\|type-I-D-CRISPR-associated-protein-Cas10d/Csc3	gnl\|CDD\|274469	TIGR03174, cas_Csc3, CRISPR type I-D/CYANO-associated protein Csc3/Cas10d. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc3 for CRISPR/Cas Subtype Cyano protein 3, as it is often the third gene upstream of the core cas genes, cas3-cas4-cas1-cas2.	0
NZ_AP017308.1\|WP_068385380.1\|3474329_3475337_+\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	gnl\|CDD\|375747	pfam18320, Csc2, Csc2 Crispr. The Csc2 Crispr family of proteins forms a core RNA recognition motif-like domain, flanked by three peripheral insertion domains: a lid domain, a Zinc-binding domain and a helical domain. The CRISPR-Cas system is possibly a mechanism of defence against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	3.42426e-172
NZ_AP017308.1\|WP_068385386.1\|3476054_3476855_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.2354e-37

>NZ_AP017308.1|WP_084762031.1|3478874_3479222_+|CRISPR-associated-endonuclease-Cas2
MPHTSHPTPTPHTPHLTPYAYPVLLIIYDLPDDKAANKRRTRLHKLLSGYGTWTQYSVFECFLSAVQFAKLQVQIERLIQPDVDAVRIYLLDAGAVKRTIAYGSEKPRQISAIVL
>NZ_AP017308.1|WP_068385394.1|3478478_3478853_+|four-helix-bundle-protein
MEDREIRGHRDLKVWNRAMDLVVRSYELTKEFPKAEQYGLTSQIQRAAVSIPANIAEGKGRRHLGDYLRHLSIARGSLMELETHILIAERLCYLTSQKAEAVLLLIEEISRMLSSLQQALEKRR
>NZ_AP017308.1|WP_068385391.1|3477431_3478409_+|type-I-D-CRISPR-associated-endonuclease-Cas1
MSVLYVTQPDAILNKSYEAFTVKLKQADGTWKKQTIPPQTVDQVVLMGNPQVTGDALMYALELGMSVHYLSSFGKHLGSALPVESRNGQLRLAQYRRYEDQARKLELVKAIVIAKIQNQAAVLYRHNVKEEKLKQRKASVTSQKTIDQVRGVEGLAAREYFACWSQMLKEPWTFAGRNRRPPTDPVNALLSFAYGLLRSQVTAAIHLAGLDPYIGYLHEVTRGQPAMVLDLMEEFRALVADNVVLSVLNNREIQTKDFTESLGAYLLSDAGRRTFLQAFERKLSDEFKHPVFEYRVSYRRAIELQARLLARHLQEGVSYKPLVLR
>NZ_AP017308.1|WP_068385389.1|3476851_3477430_+|CRISPR-associated-protein-Cas4
MKSENYLPLSYLNAWEYCPRRFYFEFVLGEMAENEHLVLGTHLHRNINEAGVMQEGDTVIHQQQWVWSERLQVSGVIDAVEVRSGQLIPLEYKKGKMGRHLSDHFQLCAAALCLEERTGTAIAYGEIFYHANRRRQRVEFSPQLRQMTEEAIRAAHVAESRPMPAPIEHKTKCQACSLQRMCLPIEMKQLRS
>NZ_AP017308.1|WP_068385386.1|3476054_3476855_+|CRISPR-associated-endoribonuclease-Cas6
MPHSLVLNLLPRSTIPASHLSGRHLHALFLDLVRSQNPTLSELLHKQTTEKAFTLSPLQTQSRILQYQHQHAIATSTPCWWRISLLDDALFGQLAHLWLNLSPKQPWHLGAADLNVTSILGTAQSNQPWAGFSSYHQLHEQASDYDRQIKFQFCTPTTFRVTQYDSALPTKELVFQSLLRRWNQYSGISFSEAILEPIFPSYFDIRTEIAIDSRSKLIGCVGEVTFAILGSVEPETIRQINALANFAMYAGVGRKTPMGMGMVRRR
>NZ_AP017308.1|WP_068385383.1|3475343_3476051_+|type-I-D-CRISPR-associated-protein-Cas5/Csc1
MPKFYRCTLELHDSLYFATREIGRLYETEPVLHNYALSYALGFVDSLQYNTVVAEEDSYCYFCAEQVPKYKAQLSPLNAQGIYVTPARTIVHATTLSTWKYADNRYHVEMQPTERNIPSFGRTKEISPESRFEFFVISERSLKFPRWIRLGKWASKAEVSIEPLPNAKHHQTAEFTIPYLLNPLDVMFTNQILSYDTVNMPPVSLIRNVRMRGEFYTFDGLDLKIPAQIQYCFGD
>NZ_AP017308.1|WP_068385380.1|3474329_3475337_+|type-I-D-CRISPR-associated-protein-Cas7/Csc2
MSLLQSIDSTFFHADIPYKPMGKYAHFLTIRVTESYPLFQTDGELNKARVRAGINDATPISRLTMFKRKQSTPERLVGRELLRNYGLMTAEDCEYNVKFAMDNPDCIIYGFAIGDSGSEKSKVVVDTAFSITAFDGSHETFTLNAPFENGTMASKGEAGSKPGEVTSRINQQDHIRPQVFFPSIVTLKDPTEASFLYVFNNILRTRHYGAQTTRTGRLRNELIGVVFADGEITSNLRWTQAIYDQMQVQKTLNSTDPLNEDEVISAAIATIQTLMAEEFIVHTDFIGSEFQAVLAEVKQLTGQETGMRSLLQQADIEAKTYAQKHISKKSPAKAK
>NZ_AP017308.1|WP_068385377.1|3470974_3474319_+|type-I-D-CRISPR-associated-protein-Cas10d/Csc3
MNPLNDDFDWLDNDLDLDSDRSNRTIELNQQELLTLKLLREAIQAQNPDDRVMQDFAEYVLPNLLKMAIGVTAKGGRFFEQLDQQREAEGKAKVRRDNAADQSLNTHLLNGLFPANLIEQRLEKLDTTIQRVVREKERRLAIAGFILHDFEKFPDVPDDCRKLALEEHRQIIDQKVQQLGLHLFIDSSNPESYQEYIDDLLCIAYNAQRRWDTNWNFSEYGLNPTLHGRVLSSLANLACLADSLASIVKHPHDAEHSRFRELLHTLSNGKLKLTYHRISENRGVLTNVVNNALIEAHTSLNTNECIYEPLLYLPTGVIYLAVKDAPAIDPSDLPQRIVDKIKSLCAEQLRLRQTGFGRDGKGMKYADFYGLFCSDRTLMQIALDATLRILSPNKSSVAKSRNDKLLEFQQKGALSADYDFSFGDDIRIDQIAEFGDVVARKIWGDRVEKITTARKQNKQLPELPELNLTQKVAASLGLAEYLPQIREIQKINETLKEKKIKGSTGGIPYEWYYLAAKYLKHHPGIESVREVCEKMIACIADQIEPIVDRYQLPDGWEDLRSWVKSVVMLPHSVPPAQQVDQFLKELTNYSAAKKSGRGKQLICSISHSAYTVTEQMESSVLFTPQVYTNKQMLGGGNAKRNISSIASLEIMLRQILMNQTQAVGKRFEDGKYRYLYFYPTYYFTPETNRFLQKAYTSIAQTRFDTTIRNHFISKSLDANFERSRYQTVDAFLMDEDYDRRKALPEDDPDYRKDRTFKLSYPDDQPLTFYFMALPPGKDPTDTESWVMPAWLGFAFPMILDVKTVVSESPIPPFTDGAEFEESVFLDSAPQAIRVLVKRDRFRLDSILEGWTDPDRTQYPAPLNVLTAAYAIHLEVNAKQGKGGYDANWGKLTELAKDFETSPLYVFNYLNRWIRTQKSETARIEKIRLYAYHFYPCFDPYVEFDATLDRLLLKSPEKSPMNHPQKLTDLYRRFYRANKRYNPKANAVLKPIDVAAEVILKADSVVFAGETLVAAVASEVFKLMDRVRASRAEGFNQILDREEERQAILDFARYFVVEVFENAFAHDRARLAGRQLNLLRDTCEFLYRLEQDKENRELKAKGATVDEEDTTLENE
>NZ_AP017308.1|WP_068385374.1|3470529_3470991_+|DUF86-domain-containing-protein
MTKISRLQITRKLRAMMSYINELEAFEDLTLDEYLRNFREQLVVERLIELIIQASLDITRFLLKNIHQTSPKENATVFLVAGQYGLITAEVATNLAEFGKFRNVLAHMYEEIDPVVVFGAIRETLDIYPIYARQIKEYVDSLDLENDNNESFK
>NZ_AP017308.1|WP_068385371.1|3469840_3470533_+|nucleotidyltransferase-domain-containing-protein
MKTKIELLLDTLADGKWHSSQELSEQIGWRFGNLLYQAKQQGYSIQTERDGLQYRYRRILKNSDVPSSAASDPELAIAPALQQVSHERFINFQSAVPQIVEQLPCLKMLVLFGSRARGEEREDSDWDFAVLHDLELRKQYEKKDGWGFKSWVVIQQVLQLPDDKIDIVDLDSCSDVMAHIIARDGQLLYERNQGDFANFRQNVLKSKAELRRLEQEEQSLLELELRQWGV
>NZ_AP017308.1|WP_068385399.1|3479697_3480303_-|low-complexity-tail-membrane-protein
MRSFWTDPYLWIHLAGVAAVPLALLVCLLGLAAGDPILPPWLEVGLVAAAGIAPIAWMQIQKPFYIYSLLAVALRPERLTEAQRKVLAMFLVRRNPVAVGVAAVVLFLVLKQIYAIAPIAEGITPISGHGLGLIVAAIGFLGSNLFLQVPLSVALVMWSSDAEVAQIAPIGVGEIPQRLFVFGLPVNAIVPPIQEDSTVRR
>NZ_AP017308.1|WP_068385403.1|3480403_3480622_-|hypothetical-protein
MNASNGQFSKAAVCDSQTGASETMVSQEKVKILYSADQQVKLLDLQAEAELLLKQLQALKQQRTEQPVSSIS
>NZ_AP017308.1|WP_068393241.1|3480901_3481969_+|threonine-synthase
MPRVQPWRGLIHGYRRYLPVTDQTPVVTLHEGNTPLIPVPAIAHEIGRQVQVYVKYDGLNPTGSFKDRGMTMAISKAKEAGAEAVICASTGNTSAAAAAYARRGGMRAFVLIPDGYVALGKLAQALLYGAEVLSIKGNFDRALEIVREMSQNYPVTLVNSVNPYRLEGQKTAAFEVVDVLGDAPDWLCIPVGNAGNISAYWMGFTQYHQEGRSSKLPKMMGFQAAGAAPLVHGEPFTHPETLATAIRIGNPANWNRAIAVRDASQSSFNAVTDEEILSAYRLLAANEGIFCEPASAASVAGLLKVKDQVPTGATVVCVLTGNGLKDPDSAIKFSENNFKQGVDPDLSSVAGAMGF
>NZ_AP017308.1|WP_071837140.1|3482022_3482469_-|hypothetical-protein
MNHTFLMEPGRWTLQGNWLEREGLPIALKGKLLVAWSRDDWFTLITKLTFPNDDREEITLQYRGRLDTGDRRYTFVLQHSLLGRIEGEGWIAPESLVQRHWVLGDRQRRSGFDTMYRVNDDRYYLSSTVLTGHALTSMMEATLERQPD
>NZ_AP017308.1|WP_068385409.1|3482515_3483631_-|anhydro-N-acetylmuramic-acid-kinase
MRVIGLMSGTSIDGIDAALVEISGSTDNLQATLIAGETYPYPAQLRDRILAVCSGTAVSIAELAELDDEIAEQFAQAALRIQDNQTPAVLIGSHGQTVFHRPPAERLGYSLQLGRGAAIAHQTKIATISNFRAADIAIGGQGAPLVPPIDAALLRHPIEHCCVQNIGGIGNVTYLPPPKSGLPIRGWDTGPGNMLIDLAVARFSDQKYDRNGDWAASGSPNQTLVDRWLQQDFFQQSPPKSTGREQFGAEYLEACLRDAGDLSPADILATLTELTAASIAHSYRTFLPQLPDRVLVGGGGSRNTYLKSRIQALLPDSSVITTDEAGLNADFKEAIAFAILAYWRYHEIPGNLPEVTGAPKPVLLGEIHHVG
>NZ_AP017308.1|WP_068385412.1|3483635_3484631_-|aspartate-carbamoyltransferase-catalytic-subunit
MSWNRRHVLSLADFTPAEYDTVLQTASSFREVLTRRTKKVPTLQGQVVANLFFEASTRTRSSFELAAKRLSADTLNFAASTSSITKGETILDTAKTYLAMGTDMMVIRHKEAGVPQAIADEMDRLNVKVGVLNAGDGQHEHPSQALLDLFTICSLIDVEKPRSTVLKDKKIAIVGDILHSRVARSNIWSLTASGAEVHLAAPPTLLPKEFAAFVKESDPEISRKLFIHWTLEPALIDADFVMTLRLQKERMTSYLLPSLREYHQQFGITRDRLKLCKPEVRVLHPGPVNRGVEISSDLMDDPVVSLISQQVTSGVAVRMALLYLMGGGKVG
>NZ_AP017308.1|WP_068393244.1|3485373_3485715_+|hypothetical-protein
MTKKRPRLLKETKNLAMLIAMTVRNEMEDFHCEHLTDDQMQELNPIIRNAIVTALYAARNYSEDAASMEWVNFQFRLIPEYWEEPQLTESFLRLAKSLQKKGINESKDSARLS
>NZ_AP017308.1|WP_068385415.1|3486445_3487003_-|Uma2-family-endonuclease
MTETITHTKFSLDEYHRMIELGVLDDKKVELLNGELIEMPPENPPHFTQNEEGHEYLVQLLGNRAKVRQAGPVTLPNGSEPEPDLAICQPLGREYKSHHPYPENIFWLIEYSDSTLKKDLEVKSKIYAESGIQEYWIVKIQTNELIVMRDPENGEYQTEFTLRDGIIQPLSFPDLSIEVSRIINT
>NZ_AP017308.1|WP_068385418.1|3487177_3488029_+|DUF559-domain-containing-protein
MPITRDLNTEYRPARIFNASVPNANHIPETGFSDRELGQPELPSTIRRPIKTWMPITETLGLLFAAVIFQNTPSLFDLIRLGFPIIWIWALLKKHPEYEREKVRAEQEHQEAVRAKRHYDEVTLPTWIKHTKPQALLQKRQEWALHNLNIEKACRLKGWRIHTEDEVEETRRNGYIGRGEEEVVRAIKKTGLQVSHQVQIESFYTADILCFNPDSGKLCIVEIDGAHHCYEDRQIYLDNGRMESLSNRGVPTIRFINSFAQRNSTTCAEFICKFLSNHSEESH
>NZ_AP017308.1|WP_068385420.1|3488344_3488626_-|hypothetical-protein
MTLDDVYILAEFDDLADLITLKQFTFMSLNQRKAWLNRNEKLKKKTGRGIEQYFTLVDDNDDLYFNPMVFNRVILNAIKSGRNWIDERDLIKI

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Crispr_ID: NZ_AP017308_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017308_12

3530172-3530276

TypeV,TypeI-A

Consensus_repeat	Method
GGTGGAAAGGGGAAAGACTCGAACT	CRISPRCasFinder

1 spacers

cas14j,csa3

The CRISPR arrays of NZ_AP017308_12

>merge|NZ_AP017308|12|3530172-3530276|CRISPRCasFinder
GGTGGAAAGGGGAAAGACTCGAACTTTCAACTTCTACAATGCAGTTGTAGCGCTCTTCCAATTGAGCTACCCTTCCCAAAGGTGGAAAGGGGAAAGACTCGAACT

>NZ_AP017308|12|10|3530172-3530276|CRISPRCasFinder
GGTGGAAAGGGGAAAGACTCGAACT	TTCAACTTCTACAATGCAGTTGTAGCGCTCTTCCAATTGAGCTACCCTTCCCAAA
GGTGGAAAGGGGAAAGACTCGAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017308.1\|WP_071837307.1\|3535669_3536020_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_AP017308.1\|WP_068385534.1\|3537912_3538119_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068385540.1\|3539129_3540107_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133030
NZ_AP017308.1\|WP_068385510.1\|3523821_3524571_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226171
NZ_AP017308.1\|WP_068385513.1\|3524922_3526125_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_AP017308.1\|WP_068385522.1\|3527683_3528841_-\|ribonuclease-inhibitor	unknown	unknown	gnl\|CDD\|238064
NZ_AP017308.1\|WP_068385516.1\|3526420_3527050_-\|TraX-family-protein	unknown	unknown	gnl\|CDD\|368639
NZ_AP017308.1\|WP_068385525.1\|3528847_3530143_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223959
NZ_AP017308.1\|WP_068385542.1\|3543145_3543463_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068385528.1\|3530372_3532883_-\|polynucleotide-kinase-phosphatase	unknown	unknown	gnl\|CDD\|274963
NZ_AP017308.1\|WP_084762032.1\|3524632_3524794_-\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	gnl\|CDD\|226420
NZ_AP017308.1\|WP_068393251.1\|3536446_3537610_-\|GuaB3-family-IMP-dehydrogenase-related-protein	unknown	unknown	gnl\|CDD\|236322
NZ_AP017308.1\|WP_068385531.1\|3532879_3534241_-\|3'-terminal-RNA-ribose-2'-O-methyltransferase-Hen1	unknown	unknown	gnl\|CDD\|274962
NZ_AP017308.1\|WP_068385519.1\|3527073_3527649_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NZ_AP017308.1\|WP_068385537.1\|3538139_3538850_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NZ_AP017308.1\|WP_068385507.1\|3521960_3523205_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl\|CDD\|223747
NZ_AP017308.1\|WP_068393255.1\|3542453_3543044_-\|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|226378
NZ_AP017308.1\|WP_068385501.1\|3520757_3521204_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068385504.1\|3521196_3521733_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068393246.1\|3534410_3535463_-\|LOG-family-protein	unknown	unknown	gnl\|CDD\|224527

Protein	Function_ID	Function_description	E-value
NZ_AP017308.1\|WP_068385540.1\|3539129_3540107_+\|glycosyltransferase	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	2.65566e-23
NZ_AP017308.1\|WP_068385510.1\|3523821_3524571_-\|hypothetical-protein	gnl\|CDD\|226171	COG3645, COG3645, Uncharacterized phage-encoded protein [Function unknown].	1.95623e-21
NZ_AP017308.1\|WP_068385513.1\|3524922_3526125_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.72343e-23
NZ_AP017308.1\|WP_068385522.1\|3527683_3528841_-\|ribonuclease-inhibitor	gnl\|CDD\|238064	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).	1.67585e-24
NZ_AP017308.1\|WP_068385525.1\|3528847_3530143_-\|SDR-family-oxidoreductase	gnl\|CDD\|223959	COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only].	1.12322e-24
NZ_AP017308.1\|WP_068385528.1\|3530372_3532883_-\|polynucleotide-kinase-phosphatase	gnl\|CDD\|274963	TIGR04075, Ser/Thr_phosphatase_family_protein, polynucleotide kinase-phosphatase. Members of this protein family are the bacterial polynucleotide kinase-phosphatase (Pnkp) whose genes occur paired with genes for the 3' terminal RNA ribose 2'-O-methyltransferase Hen1. All members of the seed alignment belong to a cassette with the Hen1. The pair acts in bacterial RNA repair. This enzyme performs end-healing reactions on broken RNA, preparing from the RNA ligase to close the break. The working hypothesis is that the combination of Pnkp (RNA repair) and Hen1 (RNA modification) serves to first repair RNA damage from ribotoxins and then perform a modification that prevents the damage from recurring. [Transcription, RNA processing].	0
NZ_AP017308.1\|WP_084762032.1\|3524632_3524794_-\|ribbon-helix-helix-protein,-CopG-family	gnl\|CDD\|226420	COG3905, COG3905, Predicted transcriptional regulator [Transcription].	0.00109949
NZ_AP017308.1\|WP_068393251.1\|3536446_3537610_-\|GuaB3-family-IMP-dehydrogenase-related-protein	gnl\|CDD\|236322	PRK08649, PRK08649, GuaB3 family IMP dehydrogenase-related protein.	0
NZ_AP017308.1\|WP_068385531.1\|3532879_3534241_-\|3'-terminal-RNA-ribose-2'-O-methyltransferase-Hen1	gnl\|CDD\|274962	TIGR04074, Methyltransferase_type_12, 3' terminal RNA ribose 2'-O-methyltransferase Hen1. Members of this protein family are bacterial Hen1, a 3' terminal RNA ribose 2'-O-methyltransferase that acts in bacterial RNA repair. All members of the seed alignment belong to a cassette with the RNA repair enzyme polynucleotide kinase-phosphatase (Pnkp). Chemically similar Hen1 in eukaryotes acts instead on small regulatory RNAs. [Transcription, RNA processing, Protein synthesis, tRNA and rRNA base modification].	0
NZ_AP017308.1\|WP_068385519.1\|3527073_3527649_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	4.15666e-25
NZ_AP017308.1\|WP_068385537.1\|3538139_3538850_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	8.40788e-09
NZ_AP017308.1\|WP_068385507.1\|3521960_3523205_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.77447e-57
NZ_AP017308.1\|WP_068393255.1\|3542453_3543044_-\|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl\|CDD\|226378	COG3860, COG3860, Uncharacterized protein conserved in bacteria [Function unknown].	7.74969e-30
NZ_AP017308.1\|WP_068385516.1\|3526420_3527050_-\|TraX-family-protein	gnl\|CDD\|368639	pfam05857, TraX, TraX protein. This family consists of several bacterial TraX proteins. TraX is responsible for the amino-terminal acetylation of F-pilin subunits.	6.23027e-28
NZ_AP017308.1\|WP_071837307.1\|3535669_3536020_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	2.41907e-57
NZ_AP017308.1\|WP_068393246.1\|3534410_3535463_-\|LOG-family-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	5.13401e-55

>NZ_AP017308.1|WP_068385525.1|3528847_3530143_-|SDR-family-oxidoreductase
MDISPEQLENCLQVLQQIADDPTLIDHHDRFKSLIAKIHKQGRKQSRQTQHRIHQSEDRATKESCLIVQLVQPMIEGAVSKAKQLNLPISCYICKTPYTQVHFFYHLLCPTCAEFNYQKRFQQTNLTGRTALVTGGRIKIGYQTVLRLLRDRARVIVTTRFPRDCANRYQLEPDFEQWRDRLEIYGLDLRNLSAVEGFIEQLLQTKSSIDILINNAAQTIKRPLAFYQHLLEEQSERVPLLEAQESSSLLNSYFPPQMFDRDGQPLDLRPTNSWLLKLDQVSTIELLEVQLVNAIAPFLLNSKLKPLLQRSPFDRRFIINVSAMEGQFNRINKTPFHPHTNMAKAALNMMTRTAASDYAEDNIFMNSVDTGWITNENPYPKRTNIEQKRGFYPPLDIIDGMARIYDPIVQGINSATPQFGHFLKDYVPHPW
>NZ_AP017308.1|WP_068385522.1|3527683_3528841_-|ribonuclease-inhibitor
MTNSLLHCPIPQPLETTPNVLTELAPLIEHLRSNQPITEAIAFPRGTVLPDGRLDLCKQGIGVAGCVLVAEALKRNTTIASLLLGTNGIGNEGARAIAQLIEHCDRLEIVYLGCNAIDQTGIAQLAQVLTQNQSVTGLWLKRNPIGEMGARSLAEMLRNNQSIHTLDLVHTQISKTGFGAILSVLIDSNRTVERLYLGGNQLTVEDAGLIAELLRHNRAIKALLLNVNHLGDQGIEVLANGLQDNQTLIELGLASNGISTIGCQALLPAVQNHPSLEQLDLGYSPSTKVLGAEPNRIGDEGIIAIAHFLTHNQTLLRLDLRGTTITEIARSVLGKALMQNQILCDLRLLQPLDAELTSHLEQNRLHSLYKLRTSREVILIRSVYR
>NZ_AP017308.1|WP_068385519.1|3527073_3527649_-|NAD(P)H-dependent-oxidoreductase
MSFKTIVFYGSYRRDRQGIKAARFMIEQLKQRNHQVIFADAQAYDFGILDRMYKEYDQAPEKMEDLANHIKTADGFVVVAGEYNHSIQPGLSNLMDHYLEEYYFRPAGIVSYSTGGFGGVRAAIQLRAFLTEMGMPTISTLFSIAKIGDALNEVGIPQDAALTKRATQFLDELEWYEEALQRQRQEKGTPF
>NZ_AP017308.1|WP_068385516.1|3526420_3527050_-|TraX-family-protein
MSLNNYQIKLLAAVLMLVDHIGTVFFPDLLIFRILGRFSFPLFILLLVEGEKHTRHFRQYCLRLLLLGIVSQPIYQFLFRSTLWNILFTLLLGLLCLRLVRRFPQWQLLIWIAGATIAQVLYLEYQAYGIVAIALIHRFRASASWWTEWIAFHLSLLIVAPGFVAFQFPATFAPFSLSLANHQQGRRAKWFYLFYPLHLFALWLLRYIQ
>NZ_AP017308.1|WP_068385513.1|3524922_3526125_-|site-specific-integrase
MVRKDQTRKRNGSVNIQNNGGGLRLRWNYAGKLYCLTLGLKADDSHHRRLAEAKASEIEVDILYERFDPTLVKYDPRRRMIKLIPVEEKSDLCSIDLPELWQKYIQYKTPLVEETTIRTHYRRVSSHIDKLPYKKLSEALEIRQHLLENHSLKTTKFLLMEIQAACSWAVKRRIIDHSPFAGMALEIEINEDEQEPDPFSSAARDQIIQAFADHPTYSFYRDFVWFLFFSGCRTSEAVALKWKHVDFKNWFITFSEAIVNVSSRKIQKGTKTGKTRKFPCNEQMKSFLIQRRRKSLQDREDDFLFPSLKGKAINTHTFSALCWKGASDRGTWRDGIVYRLEKDGLIDQYRSLYSTRHTFITLALYENVPIHQVAKWVGNSPEILLKHYAGQLPDTQVPEL
>NZ_AP017308.1|WP_084762032.1|3524632_3524794_-|ribbon-helix-helix-protein,-CopG-family
MKLSITPTSIRFTQDTLDRLQVIAEREDRSIPYLVRKAVLEFLDRIEQDQERA
>NZ_AP017308.1|WP_068385510.1|3523821_3524571_-|hypothetical-protein
MYISISEQEQSAIKVIVQSQVEFPVDFDDAWQWVGYSRKDSAKDALIRNFEEEVDFSGIHRKTPSGGRPSERIYLTIDCFKQFCMMAGTERGKEVRKYFLQCEKELKEIKAQPQFQVPTSLPEALRMAADLAEQKVLLETKVAVMEPKVEVYDQTMGASGWLTFAEVSKVLNIPGMGRNNLIKFLRMSGIINGKNEAYQTYVDRGYFKLKVTFVQHLNSNTSQTMTSPAGLEFILKELKKGGYQPRSVN
>NZ_AP017308.1|WP_068385507.1|3521960_3523205_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MYHAVKFRIYPSPEQEQYLAQAFGNCRWLYNFMLNKTTETYKETGKGLSKAAMDRLLPALKVEYEWLGLAYSQSLQRVTFNLSTAFQNFFDGRTKFPTFKNKFAKQSVSYPQNVRLLTEEKAIKFPGTLGTVKTVFHRDLPTGKQGCVTVSKDTSGKYFASVLFETESEPVEAINPAIGVDLGLKDFAVTSDGSKHNQSKGVQRKLKKLEQNKKRKQRKLARKKGQSNRNKAKRLVAKVSAKIARIREDFLHKLSRKIAHENQVIVVEDLAVKNMVKNPNLARAISDQGWGMFLTMLKYKAEKFGHDYIEINRFFPSSQLCSETLLPIPALQKGYDSLGIRFVDCPHCSKQHDRDINAAINIRNEGLRILALGTSAAAIGGDIRPKRSGRKKSTIVEAIPNEDRSPHCTEGQCG
>NZ_AP017308.1|WP_068385504.1|3521196_3521733_+|hypothetical-protein
MPNRTIVGTVAPFTFLTFRSSVGGRWVVRSDRAGNFSISLTANAEYEFDSGEGGFRFVLPAGTTPIDLVTLKNLSNPLTSQPPTLLEQVEELVNARLSGIDSGRIYQKTFTDSDLSVAGKLPVIHGLNDVITNVRVTTNQGEEALPDSIKPESLNTLAIGLASFRPIEGSWKVVVSVS
>NZ_AP017308.1|WP_068385501.1|3520757_3521204_+|hypothetical-protein
MDITRAILYKYPDAKFSASGFDYSGLHWLDVRPKPTLKELQAAYKEMTELGIDPLKGADWEALRVKLNQSPIFQKIYGLAKESSAIQLAFSMAMQVVLVTQNQESLGFYLEDLQKELGSNLSQSELESINSILKECGFNLTIGAGSNA
>NZ_AP017308.1|WP_068385528.1|3530372_3532883_-|polynucleotide-kinase-phosphatase
MKITIPELSLVTLIGASGSGKSTFAHQHFLPTEIISSDSCRGLVSDDETNQSATQDAFDVLYYIAAKRLNRGNLTVIDATNTQAADRKHLIRLAREYHCLPVAIVLNLPEQICRDRNRQRSDRQFGDHVIRRHVQNIRQSLRTLQKEGFRQVYVLNSLEQIESVEIDRQPLWNNKKHEQGPFDIIGDVHGCCDELEQLLQTLGYQLKEQTYYHPEGRKAIFLGDLVDRGDRILDTLNLVRNMVAAETALCVPGNHDYKLLRKLKGNKVTVNHGLDKTLAELEKLDEAELRSLQSFLDSLVSHYVLDSGRLVVAHAGMKQAYQGRGSATVREFALYGETTGEIDEFGLPVRYNWASDYRGDAIVVYGHTPVPEPVWLNGTIDIDTGCVFGGKLTALRYPEKELVSVAARQVYCEPVRPLIAESSLTLQQQDDDVLDIADVTGKRIISPKLHRPITIRPENAIAALEVMSRFAVDPKWLIYLPPTMSPVETSKEPGFLEHPTEALAYYRNQGIAQVICEEKHMGSRAIVIVCRSSKSAQKRFGVTDGRFGICYTRTGRPFFDNLQLETEFLERLRTKLAHIWDEFQTDWICLDCELMPWSVKAQQLLRQQYAPVGRAAQVGFTDAIALLEQAQSRGIEVPLQDYQARSQLAEQYRQAYRRYCWSVQSIDDLKLAPFHILATEGAVHTHRSHLWHLEQIARFADSELIIATDHLMVDTTDSQSVEAGVNWWLDRTQQGSEGMVVKPIEFLPQQRNIQPAVKCRGQEYLRIIYGAEYSRPENLERLRKRGLSAKRSLALREFALGIEALDRFVAREPLRRVHECTFGILALETEPIDPRL
>NZ_AP017308.1|WP_068385531.1|3532879_3534241_-|3'-terminal-RNA-ribose-2'-O-methyltransferase-Hen1
MLLTITTTHSPATDLGYLLGKHPDRFQPFELSFGRAQVFYPIATSECCTVALLLEVDPVRLVRGQATTLEQYVNDRPYVASSFLSVAIAQVFRSALSGQCKDRPDLAMQEIPLQVKISVLPCRGGKDFLQRLFEPLGYRVKAVQHPLDEQFPEWGNSAYYSVELTATTTLSILLSHLYVLIPVLDEDKHYWVGEEEVEKLLRHGEGWLSEHPEKTQIAQRYLKRRRSLTQAALAQLETEEDTESDTEIAIEKPISLNQVRYETIIAQLKQCQAKRVIDLGCGEGKLIIQFAKDSFFEQIAGMDVSSRSLLIVQEKLERLPTFQKQKVQVFQGALTYRDRRFENYDAATLIEVIEHLDESRLAALERAVFEFAHPSIVLLTTPNREYNIKFENLAIGKFRHSDHRFEWTREEFQTWATQIAQRFDYTVSFADIGTSDATVGAPTQLAIFERSDR
>NZ_AP017308.1|WP_068393246.1|3534410_3535463_-|LOG-family-protein
MINVESLRSTLNDLLDQLPTMQHGALIAQALGLIARISGDEIDRLDWKILNASLQDMERAFTVFYPYRHVRKIAIFGSARIKPDTEEYQLAKEFAQSVTQQGYMVITGAGGGIMEAGNEGAGADKSFGLNIQLPFEQGANKFIQGDPKLIPFKYFFTRKIFFLKESDALAVFPGGFGTQDEAFECLTLTQTGKSAPVPLVLIDKPGGGYWDDWAEYIDKQLMKRGLISRDDPSLYTITDDLDVAIAAISSFYQVYHSSRYVGSQLVLRLKTELSDEGIEELNDRFKDILVTGKIEKTKPLAQEAQDESYQLPRLIMHFNQRDLGKLYQLIAAINMLGNPPPEVYAHPERK
>NZ_AP017308.1|WP_071837307.1|3535669_3536020_-|thioredoxin
MKQRQGFSGMSATAQVTDSSFDQEVLQSEVPVLVDFWAPWCGPCRMVAPVVDEIAAQYEGKVKVVKLNTDENPGVASKYGIRSIPTLMIFKGGQRVDMVVGAVPKTTLSNTLEKHL
>NZ_AP017308.1|WP_068393251.1|3536446_3537610_-|GuaB3-family-IMP-dehydrogenase-related-protein
MDIQIGRGKTARRAYGFDEIALSPGQRTLDPKLADTRWTIGGIDREIPIIASAMDGVVDVEMAVKLSQLGALGVLNLEGIQTRYEDPNPILDRIAAVGTTEFVPLMQELYSQPIKPELIEQRIKEIKSQGGIAAVSATPAGASQFGQIAAKAGADLFFIQATVVSTAHLSPESVSPLDLAKFCEEMPIPVILGNCVTYEVTLNLMKAGAAAVLVGIGPGAACTSRGVLGVGVPQATAVADCAAARDDFYRETGTYIPVIADGGLITGGDICKCIACGADAVMIGSPFARAKEAPGRGFHWGMATPSPVLPRGTRIRVGTTGTLEQILRGPAQLDDGTHNLLGALQTSMGTLGAKDIKEMQQVDVVIAPSLLTEGKVYQKAQQLGMGK
>NZ_AP017308.1|WP_068385534.1|3537912_3538119_+|hypothetical-protein
MSAKPDFNSMTQSELRAYVLDHRDDDEALHAFIDKRRAENPPSRKYGAGDDISAAIDEYLKQLEDHRK
>NZ_AP017308.1|WP_068385537.1|3538139_3538850_-|methyltransferase-domain-containing-protein
MSSYTYVGSELELFREARNWKAYYARLIRPYLGSDVLEVGAGIGGTTQILCRSQHQQWMCLEPDGDLVSVLKETAISGGLPQFCEIQQGTVTTLASDSQFDSILYIDVLEHIEEDSLEVQQAVQHLKVGGHLIVLSPAHSWLYSPFDAAIGHYRRYDKRSLSAATRHLDCVFLGYLDSVGLLASLSNRWLKRSMPTAKQIRLWDRAMVPVSTRIDGLLGYSIGKSILGVWRRPSHL
>NZ_AP017308.1|WP_068385540.1|3539129_3540107_+|glycosyltransferase
MSASSVLIAIPVFNDWESISVLISQIDEALLFEKLEADILILNDGSTVTYQESFTLPMLKAIKQIHLLNLKRNLGHQRAIAIGLCYIEESMNCEAVIVMDGDGEDAPTDIPRLIHKCREQNHSKIVFARRTQRSETLLFKAFYRLYKYLFKSLTGENMEIGNFSIIPFNLLERVVILSETWNHFAAGILKAKIPFMTIPCKRSSRIAGRSKMNFVSLVMHGLSAISVYGDVIGIKALLATIGLMLGSIFLVAVVVIVRVAVPNWAPYVAGLSFIVFLQCMTASLAFIFLVLNGRNNFSFLPKRDYRYFVHDIREIFSNNTVPRLR
>NZ_AP017308.1|WP_068393255.1|3542453_3543044_-|metalloregulator-ArsR/SmtB-family-transcription-factor
MSQPEFQTLLSFFKALSNESRLKLVGILAQREYSVEELAALLQLKEPTISHHLSKLKELNLVQMRPDRNTHLYRLNQEALQDLSKAIFTSAQITTVSSEINPNAWEEKVLRSFLEGDRLREIPASRKKRWVILKWLVNQFEIGQDYPERSLNEIIKRVHPDTATLRRELVGYRMMQRENGVYWREPESQWREELSP
>NZ_AP017308.1|WP_068385542.1|3543145_3543463_+|hypothetical-protein
MSEEPQESWRDRVERLESNLAQFIDFVAQNQRTQAVQLQTHQEQITEIRQISQQLAQAQIETFTRIDRMQAEIQEMQNEIRGLRIETQRMLDAYLNPDSDEDNQN

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Crispr_ID: NZ_AP017308_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017308_13

4241978-4242117

Orphan

Consensus_repeat	Method
TGCTTGAATTGATGAATGCTTGAACTGTGGTTCTAAGCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP017308_13

>merge|NZ_AP017308|13|4241978-4242117|CRISPRCasFinder
TGCTTGAATTGATGAATGCTTGAACTGTGGTTCTAAGCCACTGTTGCCGCAGCGGTTTTAGAGGGTGCGAGGTGCGAGGTGCGGGGTGCGAGGGAGGAGTGCTTGAATTGATGAATGCTTGAACTGTGGTTCTAAGCCAC

>NZ_AP017308|13|11|4241978-4242117|CRISPRCasFinder
TGCTTGAATTGATGAATGCTTGAACTGTGGTTCTAAGCCAC	TGTTGCCGCAGCGGTTTTAGAGGGTGCGAGGTGCGAGGTGCGGGGTGCGAGGGAGGAG
TGCTTGAATTGATGAATGCTTGAACTGTGGTTCTAAGCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017308.1\|WP_068387213.1\|4242376_4243036_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068393443.1\|4235268_4236354_+\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|223928
NZ_AP017308.1\|WP_068387199.1\|4236848_4237097_-\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|240845
NZ_AP017308.1\|WP_068387204.1\|4240389_4240590_-\|heavy-metal-transport/detoxification-protein	unknown	unknown	gnl\|CDD\|225328
NZ_AP017308.1\|WP_068387200.1\|4237404_4238874_-\|9,9'-di-cis-zeta-carotene-desaturase	unknown	unknown	gnl\|CDD\|131779
NZ_AP017308.1\|WP_068393447.1\|4239770_4240313_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|334450
NZ_AP017308.1\|WP_068387190.1\|4234304_4235291_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238577
NZ_AP017308.1\|WP_068387231.1\|4247586_4247925_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068387207.1\|4240698_4241319_-\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
NZ_AP017308.1\|WP_068387240.1\|4250436_4250631_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068387234.1\|4247921_4248341_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350229
NZ_AP017308.1\|WP_068387198.1\|4236479_4236749_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_AP017308.1\|WP_068387216.1\|4243081_4244488_+\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NZ_AP017308.1\|WP_068387225.1\|4245699_4246791_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|238905
NZ_AP017308.1\|WP_068387237.1\|4248486_4250295_+\|toll/interleukin-1-receptor-domain-containing-protein	unknown	unknown	gnl\|CDD\|379328
NZ_AP017308.1\|WP_068387202.1\|4238924_4239593_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380190
NZ_AP017308.1\|WP_068387228.1\|4246831_4247452_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|335717
NZ_AP017308.1\|WP_068387219.1\|4244474_4244942_-\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	unknown	unknown	gnl\|CDD\|235777
NZ_AP017308.1\|WP_068387222.1\|4245010_4245574_-\|elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
NZ_AP017308.1\|WP_068387210.1\|4241528_4241939_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP017308.1\|WP_068393443.1\|4235268_4236354_+\|glycosyltransferase-family-9-protein	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	1.61302e-50
NZ_AP017308.1\|WP_068387199.1\|4236848_4237097_-\|RNA-binding-protein	gnl\|CDD\|240845	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins. This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. .	2.61577e-32
NZ_AP017308.1\|WP_068387204.1\|4240389_4240590_-\|heavy-metal-transport/detoxification-protein	gnl\|CDD\|225328	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism].	0.00500049
NZ_AP017308.1\|WP_068387200.1\|4237404_4238874_-\|9,9'-di-cis-zeta-carotene-desaturase	gnl\|CDD\|131779	TIGR02732, Zeta-carotene_desaturase, 9,9'-di-cis-zeta-carotene desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.	0
NZ_AP017308.1\|WP_068393447.1\|4239770_4240313_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|334450	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase. Family of domains with putative PNPOx function. Family members were predicted to encode pyridoxamine 5'-phosphate oxidase, based on sequence similarity. However, there is no experimental data to validate the predicted activity and purified proteins, such as yeast YLR456W and its paralogs, do not possess this activity, nor do they bind to flavin mononucleotide (FMN). To date, the only time functional oxidase activity has been experimentally demonstrated is when the sequences contain both pfam01243 and pfam10590. Moreover, some of the family members that contain both domains have been shown to be involved in phenazine biosynthesis. While some molecular function has been experimentally validated for the proteins containing both domains, the role performed by each domain on its own is unknown.	1.80206e-08
NZ_AP017308.1\|WP_068387190.1\|4234304_4235291_+\|hypothetical-protein	gnl\|CDD\|238577	cd01172, RfaE_like, RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.	7.0978e-81
NZ_AP017308.1\|WP_068387207.1\|4240698_4241319_-\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	6.77775e-57
NZ_AP017308.1\|WP_068387234.1\|4247921_4248341_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350229	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins. This family includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This family belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.31671e-22
NZ_AP017308.1\|WP_068387198.1\|4236479_4236749_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	4.83868e-11
NZ_AP017308.1\|WP_068387216.1\|4243081_4244488_+\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	2.72285e-126
NZ_AP017308.1\|WP_068387225.1\|4245699_4246791_+\|peptidylprolyl-isomerase	gnl\|CDD\|238905	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.	7.57601e-86
NZ_AP017308.1\|WP_068387237.1\|4248486_4250295_+\|toll/interleukin-1-receptor-domain-containing-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	3.0696e-27
NZ_AP017308.1\|WP_068387202.1\|4238924_4239593_+\|hypothetical-protein	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	0.00111934
NZ_AP017308.1\|WP_068387228.1\|4246831_4247452_-\|hypothetical-protein	gnl\|CDD\|335717	pfam04313, HSDR_N, Type I restriction enzyme R protein N-terminus (HSDR_N). This family consists of a number of N terminal regions found in type I restriction enzyme R (HSDR) proteins. Restriction and modification (R/M) systems are found in a wide variety of prokaryotes and are thought to protect the host bacterium from the uptake of foreign DNA. Type I restriction and modification systems are encoded by three genes: hsdR, hsdM, and hsdS. The three polypeptides, HsdR, HsdM, and HsdS, often assemble to give an enzyme (R2M2S1) that modifies hemimethylated DNA and restricts unmethylated DNA.	0.00379425
NZ_AP017308.1\|WP_068387219.1\|4244474_4244942_-\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	4.62585e-55
NZ_AP017308.1\|WP_068387222.1\|4245010_4245574_-\|elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	1.14224e-109

>NZ_AP017308.1|WP_068387210.1|4241528_4241939_+|hypothetical-protein
MSATAQESTSPVFRPRETIPNEVNRTFFGGPGEFSDRNPLRNTQTILGTPYGFPENQISRDGERLHRLYVDLLNQQVSSDPLIRTADLPNPFNLSVQTLPDAGNRVMGSEFSIEQSLEPQFPVQPPRPTQLLPQRF
>NZ_AP017308.1|WP_068387207.1|4240698_4241319_-|orotate-phosphoribosyltransferase
MTNVTKFDAKSFPWATADIDEVHDRLLDLFCLDAYREGDFLLSSGQRSTYYINGKQVTLHPQGALAVGRVLLSLIDSETVAVAGLTLGADPIVTATSVVAAYEGRSIAALIVRKEAKGHGTQAYIEGLTLPEGSPVVVLEDVVTTGQSAMKAVDRLRDAGYRVEEVISLVDRQQGGAEFYQQQGLKFRAVYTIQDLQQRWKQLQQS
>NZ_AP017308.1|WP_068387204.1|4240389_4240590_-|heavy-metal-transport/detoxification-protein
MALKLHVPTLNSPEAAEDIKETILTHEPDAKVEIDLEQKTVTVEAKASEETFKQAITATGHEISGY
>NZ_AP017308.1|WP_068393447.1|4239770_4240313_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MAKFYPALTNALQQFIESQHIFFTATAPIEGRINVSPKGINSFRVLDHQTAAYLDLTGSGNETSAHLLENGRMTIMFCSFEGKPVILRLYGTGYVIRPCDDKWDALYPMFEPVPGTRQIVLLQIESVSTSCGGGVPLYDFVSDRDTLINWAAKKGKQGLEKYWKDNNQVSIDGLPSHSLI
>NZ_AP017308.1|WP_068387202.1|4238924_4239593_+|hypothetical-protein
MRENRNRGILTGSILFQVVMIKGLRWLLLGLLTGCTPLPTRIIEYTPPRPVDPTPYEKKGYVSGIPADRVIPKSQIKVPRTVVAKPGQKLSEDDLGTLLTQAEDKAISAENLARTAQSKDDWSLVIDRWKLAIDILKPAAQMPRVRQALTEYERNLSQAQIQAKTNPRQLDVTERSTSNGIPLTVNSPSPSPSPSASPSPSPSASPSPSASPSPEPKSTSVQ
>NZ_AP017308.1|WP_068387200.1|4237404_4238874_-|9,9'-di-cis-zeta-carotene-desaturase
MRVAIVGAGLAGLAAAVELVDAGHEVELFEARSFVGGKVGSWIDSEGNHIEMGLHVFFNNYANLFALMEKVGAYKELLPKEHVHTFVNRGGELGKLDFRFLLGAPFHGLKAFFTTGQLTIQDKLQNAIALGTSPIVPGLVNYDVAMKMIRALDDVSFADWFRSHGGSQNSLKKMWDPIALALGFIDTENISARCMLTIFMMFASKTEASRLNMLSGSPAEYLHKPIVDYIEAKGAKIHTRRQTRRILFEGEGENTKVTGLAIANGDAEEIITADVYLAACDVPGIQRLLPQEWRSIKEFDNIYKLEAVPVATVQMRFDGWVTEMNDPEARKQVEHAAGMDNLLYSSDADFSCFADLALTSPKDYYREGQGSLMQVVLTPGDPFVPMSNEDIAKHALKQIHDLFPSSQELNMTWYNVVKLAQSLYREEPGKDPYRPSQRTSIENFFLAGSYTQQDYIDSMEGATISGKQAAQKILEPTGYKVQGVGLFKY
>NZ_AP017308.1|WP_068387199.1|4236848_4237097_-|RNA-binding-protein
MTIYVGNLSYQATVDDLKTVFAEYGDVKRVVLPTDRETGRMRGFAFVEMEQDAQEDAAIAELDGAEWMGRQLRVNKAKPKGE
>NZ_AP017308.1|WP_068387198.1|4236479_4236749_+|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MNLIAWIILGLIAGAIAKAIYPGDQGGGILGTIVLGIIGAFVGGSLYTFLTTGALNLTAASLSFGGILIAVLGAIVAIFLWGLLTRRAA
>NZ_AP017308.1|WP_068393443.1|4235268_4236354_+|glycosyltransferase-family-9-protein
MMSWNHAKNLLCIRLDTIGDVLMTTPAFRALKDSVPDRRLTLLTSSAGSAIAPLIPEIDHTIVYDSPWLKATATRESPKPEYEMIERLKQHQFDGAIVFTVYSQNPLPSAFLCYMAEIPLRLAHCHENPYQLLTDWIKDPEPDRGIRHEVQRQLDLVAEIGATTENQKLSIRIEQKDRDRVSQILSSLNLPKQWAVIHTGATAPSRRYSIEQFAIVADQLMLEHDCAVIFTGTTLELDIVAQIRSRMQAEAHSLVCQLSLSELTALIELSPVLISNNTAPAHLAAAVGTPVVDLYALTNPQHTPWQVSHRLLFQDVPCKYCYKSICPEGHHHCLAQVAPETVVKAACELLEETAQTLEISA
>NZ_AP017308.1|WP_068387190.1|4234304_4235291_+|hypothetical-protein
MNDFLSVLKQFSRSQILVIGEAMLDRYFHGGATRLCQETPVPVVTVSQTIEQPGGAANTAMNLQSLGAEVTLLSVVGEDWEGTRLRQVMSGNQGMVTASDRTTLTKQRIMDGDRLLLRFDQGTTEALSTELENKLITELRTQWNNYDAVIISDYGYGILTDRIINTVHQLQQRNPKILIVDAKNLIKYQSLNVTAVKPNYQQTLNLLNQIGEVHNSRVQFVKRNAEQILERTGAKIVAVTLDREGVILLQRARAPYQIRANPACPTQTIGAGDTFTAAFSIALTLTDNPAIAAEIAAAAAAIVVQKPGTARCTLEELQSMFNHVLEPR
>NZ_AP017308.1|WP_068387213.1|4242376_4243036_+|hypothetical-protein
MKINSTVALTFTLLALMLGAGVLTGSWGFAMGRQALKGITQPDSRPTKGGSAKSTSVREDIVLLKEEDVLKTVKERTNSGGREASPSPSPSAKPEQNKPDAAPTSAKLPMTTQTNGVAMDVTGIRKQGEFLLLDVALKNNSEQPVKFLYSFLNVTDDKGRLIVADTTGLPPELPSKSDRFTGTISIPSSMLDDAQRISLQLSDYPDQKLQLKMADIPIK
>NZ_AP017308.1|WP_068387216.1|4243081_4244488_+|HlyC/CorC-family-transporter
MTAPIPLVPAVPLQDLTFTDIGLRFLSVLLLIAINAFFVTAEFSIVSVRRSRINQLVDAGDIQARTVQSLQQSIDRLLSTTQLGITLSSLALGWIGESTMATVISFWFSRLPLPNGLVQPISHTASTAIAFLMIAYLQIVLGELCPKSLALLYSEEIARFLGPFSLAIARFFNPFIWVLNQSTRLLLRLIGVQYTGQGWYNQVTPEELQLIIATSSESSGLEQEERELLSNVFEFGEVSAESVMIRRPSMITLPIDATVRDLLVEVAESGHSRFPVIGESIDDICGLVHLKELAEPLVQGTLEMDSPIQPWIHPARFVPEYTSLGELLTLMQRDRQHMVMVVDEFGGTAGLVTIQDLVTQIIGDPPESESDQDLEIQKVDDNTFLIQAQLDVEEINDRLDLHLPVTDEYQTLGGFLFYQWQKIPQKGETLQYANYELTVVSAEGPRLHEIRVHRIETPDMLDELSKKD
>NZ_AP017308.1|WP_068387219.1|4244474_4244942_-|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein
MPLDLTELRELLTALNQTDISELTLKADDFELTVRRGSRVEMAPVAPVPVSQPTIAPPPESVKPETPSAAPINDRKLADVVSPIVGTFYRSPSPDEPPFVDMGNRIQKGQVVCIIEAMKVMNEIEAEVSGEIVEILVQNGEPVEYGQPLMRVNPS
>NZ_AP017308.1|WP_068387222.1|4245010_4245574_-|elongation-factor-P
MISSNDFRPGVSIELDGSVWRVVEFLHVKPGKGSAFVRTKLKNAQNGNVVERTFRAGETVPQATLEKSTMQHTYKEGDEFVFMDMETYDEGRLSAAQIGDRVKYLKEGMEVNVVRWNEQVLEVELPNSVVLEVTQTDPGVKGDTATGGTKPAIVETGAQVMVPLFITIGEKIKVDTRNDTYLGREKE
>NZ_AP017308.1|WP_068387225.1|4245699_4246791_+|peptidylprolyl-isomerase
MSFCNVSFKRSVLGLVCVIVLLIGFASPVYALPQGNAIKDPKALLRYALPIDNPEIRQVQSSIEDISAQLRANRRWGAVTSDVKRADRILLTKSDKILASVVDDRKSEAEQLIEQLKTGIAELTEVAEAKDKVKTLEKRAELLDKVGTIEEAMVTGFPYEVPAEYSNLPQLKGRATIAAKTSKGDLTIVVDGFSAPVTAGNFVDLVQRGFYNGLPFTRAEDSYVLQIGDPPGKEVGFIDPKTNKYRAIPLEVLVKGDKVPTYGITLEDAGRYLEEPVLPFSSYGALALARPDFDANGGSSQFFFFLFEPELTPAGANLLDGRYSIFGFVTEGADVLGQLKAGDTIESMKVVDGLENLVEPKDA
>NZ_AP017308.1|WP_068387228.1|4246831_4247452_-|hypothetical-protein
MTTLTATEVTLAQLRDRFGIMRSTDPNFFDADFASNLKITEAEKRILDRVQQNYLSQLEVQGLNEETVKMVVVSPLLDHAGFYRFPFTIDSEVSIEIQEIENGVTLTGRIDTLIVRNQLWILVVESKRTRFSVQAAIPQALSYLLATPQPEKPAYALMTNGGEFLFVKLLHQAMPIYGFSKTFSLLNNGNDLYQVLEILKQITSSL
>NZ_AP017308.1|WP_068387231.1|4247586_4247925_+|hypothetical-protein
MDTLSILLERETNGFRASVLGLPDCQASGSTREEALAKVQAVLNDRLQSAEIITIPHHSSSLANLTGIFKDDPQWDEFQAAIASYREITDAELAAEYDREADRATNQENSAA
>NZ_AP017308.1|WP_068387234.1|4247921_4248341_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MTLWILDTDHLSLWQRAHPQVSQQIAQRDISTIAITIITAEEQLRGRLDVIRQTEGEKRVLAYLRFRETLLFLRQIPTLLNFSTEAEQYHTELKRQKIRIGSQDLRIAAIVMSAKATIVTRNRRDFEKVPGLVIEDWTI
>NZ_AP017308.1|WP_068387237.1|4248486_4250295_+|toll/interleukin-1-receptor-domain-containing-protein
MRDVFISYSRKDKPFVERLHQALEAQNRDTWVDWDDIPLTAEWWQEIQRGIEAANTFVFVISPDSLASQVCGREIDHATQHNKRLIPIVYRAIDGLAVHPALQPMQWIFFQDPERFESQLQRLLTEMDRDLDYVRSHTRYQLRAIEWQNQKRNESFGLKGDELRSAEAWLSQGEIKEPKPTELQQNYIRASRSTEDANEGARQILERAVTKAKRVSLLSLLGIAIALGVAAITVPASIQAQKRAEQANQDLVKTQEKERAATERAQLAQTQFEQAQKQKKAAAEQAKQAVEKGRIAQQQFTQAQQQARIAAQQLAQVNQDKQAAKTAFMNLQQEKAGITATINDVIGSSDAIVNGYLVDTLQNSNEAITFFTNFLKLAPSYAPAFWGRGVAYHKKGDEVAKKGDKVTAEYYYEKSVADYNRAVEYSSQGNRENYWSIAHRGVSYRKLRKFQNAIDDFTLVSHRRSTDTWVVIWVLIQRAETYAEIEDYENAIADCQRIIKKKYSDDITANAYIRKGDFQIAWSSKSSDKATQDQNLSDAIADYHKAIDLKPANVRALSLLGYAYNLQGNKKLALEYLSRAAQLDPQLKWATELHDKIQQELK
>NZ_AP017308.1|WP_068387240.1|4250436_4250631_+|hypothetical-protein
MIQSKSQPTLDEIRAMIAQIPPQDLITLFEEIEERLQTTEIMRLAETGFQEWDDPEEDIYNAET

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Crispr_ID: NZ_AP017308_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017308_14

4661158-4661265

TypeV

Consensus_repeat	Method
GATCTAACCTGGTTTGTTATAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP017308_14

>merge|NZ_AP017308|14|4661158-4661265|CRISPRCasFinder
GATCTAACCTGGTTTGTTATAAAAATAATTCAACTAATAAAATACTTTTATGCAATTATAATATGTAGTTTTAATACACTTATTGATCTAACCTGATTTGTTATAAAA

>NZ_AP017308|14|12|4661158-4661265|CRISPRCasFinder
GATCTAACCTGGTTTGTTATAAAA	ATAATTCAACTAATAAAATACTTTTATGCAATTATAATATGTAGTTTTAATACACTTATT
GATCTAACCTGATTTGTTATAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017308.1\|WP_068388262.1\|4650674_4652756_+\|NAD(P)H-quinone-oxidoreductase-subunit-5	unknown	unknown	gnl\|CDD\|236005
NZ_AP017308.1\|WP_068388289.1\|4664095_4664344_-\|UPF0175-family-protein	unknown	unknown	gnl\|CDD\|377095
NZ_AP017308.1\|WP_068388273.1\|4657252_4657576_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|225216
NZ_AP017308.1\|WP_068388276.1\|4659378_4661034_+\|response-regulator	unknown	unknown	gnl\|CDD\|381126
NZ_AP017308.1\|WP_068388268.1\|4654895_4655579_-\|zinc-metallopeptidase	unknown	unknown	gnl\|CDD\|377289
NZ_AP017308.1\|WP_084762076.1\|4655803_4656523_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224627
NZ_AP017308.1\|WP_068388305.1\|4668492_4669650_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NZ_AP017308.1\|WP_068388279.1\|4661346_4662504_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_AP017308.1\|WP_068388286.1\|4663106_4664006_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_AP017308.1\|WP_068393540.1\|4657068_4657281_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017308.1\|WP_068393535.1\|4654644_4654845_+\|prevent-host-death-family-protein	unknown	unknown	gnl\|CDD\|376852
NZ_AP017308.1\|WP_068388296.1\|4665678_4666764_-\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NZ_AP017308.1\|WP_068388302.1\|4668201_4668456_+\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|376855
NZ_AP017308.1\|WP_068388308.1\|4669780_4670761_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_AP017308.1\|WP_068388265.1\|4652905_4654483_+\|NADH-quinone-oxidoreductase-subunit-M	unknown	unknown	gnl\|CDD\|235050
NZ_AP017308.1\|WP_068393542.1\|4657890_4659285_-\|cyclic-nucleotide-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|340419
NZ_AP017308.1\|WP_068388281.1\|4662500_4663064_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NZ_AP017308.1\|WP_068388270.1\|4656523_4656928_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|376779
NZ_AP017308.1\|WP_068388293.1\|4664518_4665541_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|226612
NZ_AP017308.1\|WP_068388299.1\|4666925_4668176_+\|exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl\|CDD\|272979

Protein	Function_ID	Function_description	E-value
NZ_AP017308.1\|WP_068388262.1\|4650674_4652756_+\|NAD(P)H-quinone-oxidoreductase-subunit-5	gnl\|CDD\|236005	PRK07376, PRK07376, NADH-quinone oxidoreductase subunit L.	0
NZ_AP017308.1\|WP_068388289.1\|4664095_4664344_-\|UPF0175-family-protein	gnl\|CDD\|377095	pfam03683, UPF0175, Uncharacterized protein family (UPF0175). This family contains small proteins of unknown function.	3.40895e-23
NZ_AP017308.1\|WP_068388273.1\|4657252_4657576_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|225216	COG2337, MazF, Growth inhibitor [Signal transduction mechanisms].	2.77225e-12
NZ_AP017308.1\|WP_068388276.1\|4659378_4661034_+\|response-regulator	gnl\|CDD\|381126	cd17595, REC_TrxB, phosphoacceptor receiver (REC) domain a fused response regulator with a thioredoxin reductase output domain. This family is composed of uncharacterized fusion proteins containing a REC domain and a thioredoxin reductase domain. Thioredoxin reductase catalyzes the reduction of thioredoxin and is thus a central component in the thioredoxin system. Fusion proteins containing REC and thioredoxin reductase domains could play an important role in the environmental regulation of the cellular dithiol-disulfide ratio. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	4.05209e-78
NZ_AP017308.1\|WP_068388268.1\|4654895_4655579_-\|zinc-metallopeptidase	gnl\|CDD\|377289	pfam04298, Zn_peptidase_2, Putative neutral zinc metallopeptidase. Zinc metallopeptidase zinc binding regions have been predicted in some family members by a pattern match (Prosite:PS00142), of the characteristic HEXXH motif.	2.24006e-116
NZ_AP017308.1\|WP_084762076.1\|4655803_4656523_+\|HD-domain-containing-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	1.77522e-58
NZ_AP017308.1\|WP_068388305.1\|4668492_4669650_-\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	1.22658e-25
NZ_AP017308.1\|WP_068388279.1\|4661346_4662504_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	3.11961e-31
NZ_AP017308.1\|WP_068388265.1\|4652905_4654483_+\|NADH-quinone-oxidoreductase-subunit-M	gnl\|CDD\|235050	PRK02546, PRK02546, NAD(P)H-quinone oxidoreductase subunit 4; Provisional.	0
NZ_AP017308.1\|WP_068393535.1\|4654644_4654845_+\|prevent-host-death-family-protein	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	0.00373677
NZ_AP017308.1\|WP_068388296.1\|4665678_4666764_-\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NZ_AP017308.1\|WP_068388302.1\|4668201_4668456_+\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|376855	pfam02609, Exonuc_VII_S, Exonuclease VII small subunit. This family consist of exonuclease VII, small subunit EC:3.1.11.6 This enzyme catalyzes exonucleolytic cleavage in either 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones.	1.04745e-07
NZ_AP017308.1\|WP_068388308.1\|4669780_4670761_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	4.76324e-94
NZ_AP017308.1\|WP_068388286.1\|4663106_4664006_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	1.55515e-22
NZ_AP017308.1\|WP_068393542.1\|4657890_4659285_-\|cyclic-nucleotide-binding-domain-containing-protein	gnl\|CDD\|340419	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS. This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Escherichia coli AtoS, an HK of the AtoS-AtoC TCS. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some have accessory domains such as HAMP or PAS sensor domains or CBS-pair domains.	1.30733e-36
NZ_AP017308.1\|WP_068388281.1\|4662500_4663064_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.5062e-35
NZ_AP017308.1\|WP_068388270.1\|4656523_4656928_+\|ribosome-silencing-factor	gnl\|CDD\|376779	pfam02410, RsfS, Ribosomal silencing factor during starvation. This family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal subunit, thus acting as a ribosomal silencing factor (RsfS) by blocking the joining of the ribosomal subunits. This family is structurally homologous to nucleotidyltransferases.	3.28041e-43
NZ_AP017308.1\|WP_068388293.1\|4664518_4665541_-\|restriction-endonuclease	gnl\|CDD\|226612	COG4127, COG4127, Uncharacterized conserved protein [Function unknown].	3.36406e-68
NZ_AP017308.1\|WP_068388299.1\|4666925_4668176_+\|exodeoxyribonuclease-VII-large-subunit	gnl\|CDD\|272979	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. [DNA metabolism, Degradation of DNA].	1.25307e-158

>NZ_AP017308.1|WP_068388276.1|4659378_4661034_+|response-regulator
MVKPIILTVDDDVDVLSAIARDLRKQYGDRFRIVRADSGMSAIEVVQQAKLKNEAIALFLVDQRMPNMSGVEFLTEALQTFPTAKRALLTAYADTDAAIEAINSTQIDYYLLKPWNPPEERLYPVLDDLLEDWMSAFRPPFEGIRVIGNRWSPQSHQVKDFLARNQVPYEWFDVELSEEAQQLVQYAQCDRLQLPLVLFPDGSSVLQPTPAQIADRIGLHTQAGNPFYDLVIVGGGPAGLAAAVYGASEGLDTVMVEREAPGGQAGTSSRIENYLGFPVGLSGSDLARRAVTQAKRFGVEILTPQEATGIRIQDAYRIVTLADGSEISCHALILALGVSWRRLNIPGIDRLTGAGVYYGAAQTEAIACRDEDVYIIGGANSAGQAAMYFSKYARQVTMLVRGESLTKSMSQYLIDQIDSTANITVKTFSSVVEVKGESSLEAITIENANTGERDTVPATSLFIFIGAEPRTKWLDGVIDRDDRGFIFTGADLEKRPKGWMLDRDPYLLETNIPGVFAVGDVRHNSVKRVASGVGEGSICVQFVHQYLSKVL
>NZ_AP017308.1|WP_068393542.1|4657890_4659285_-|cyclic-nucleotide-binding-domain-containing-protein
MLCIKDLQALELFQTLPESRLKWICDRAEELHLDPGEVLIHEGEAGKGYFVLSAGRLAIFRSTEGIEMPLGQHDAPISFGEVPILTDEPVLVTIRAITNCRLHRLTCEDFLEVLHSCRQFERLVFKTVQQRVEGLTTFIRQREKMAALGTLSAGLAHELNNPAAAVVRALQDVVPALVELQRMTLVSGQNQLSEAHTKAWIQARDQGFDTLLNHSIDLVTVRDREDELLTWLEDYGIDDAWKLSEPLASAGMTIDQLEQLIEPWRDNQTEMHDLGFRWLALSFEVVSMITSGLHGAKRMSELVQAMKSYSHLDQGVQQIVDIHEGIEDTLRLFAFKLKKGIEIRRHYDCNTPKILAYGSELNQVWTNLIDNAIDAIGDRGVLEIITNCCHDHLEVQIIDSGSGISEEVRSRIFEPFFTTKPVGKGTGLGLELCRRIVENRHQGALTYDSVPGRTRFTVCLPVKS
>NZ_AP017308.1|WP_068388273.1|4657252_4657576_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MSNSIPKRGEVWLVDLGYVAKVRPCLVISIPIEDDDRAVVTLVAHTTRPRDSRFEVNIEVRFLRPGVFDAQNLVTVPDVKLIKRLGVLTAEQLAQVEESVRFWLGLE
>NZ_AP017308.1|WP_068393540.1|4657068_4657281_+|hypothetical-protein
MNSAAQKLINSFEQLPDLEKQQVATEILRRTLIQDIPELLDEALILNAEALFLSLDEFEADDEQQYSETR
>NZ_AP017308.1|WP_068388270.1|4656523_4656928_+|ribosome-silencing-factor
MTELSNQQTLSTPMTNIDDRSELLARLVAEAADERKGSDIVLLKVGDVTVLADYFVLVTGYSKVQVRAIARSIEDKIEETMNRKPIRSEGFSEGTWVVEDFGDVIVHVMMPQEREYYGLESFWGHAARIPVGEF
>NZ_AP017308.1|WP_084762076.1|4655803_4656523_+|HD-domain-containing-protein
MRELPKALQTDGTSPQVNQSIALSGLLPPPDRTRARVLAWLKGNVPETRIRHILRVEQFAIELAQLHGLNVEKAAQAALMHDLAKFFKPKRLLSMAIAEGLTLDPIDESNPHLLHADAGAIVARDEFGVQDEEVLDAIRHHTLGSPTMTLLGCVVYLADGLEPGRGNTPELEELRRLSHEDLIQATWRAADASLRHLIQAGHLIHPRTVQTRNAFLQQYKQTEAKPRTLQNHFVKGIQP
>NZ_AP017308.1|WP_068388268.1|4654895_4655579_-|zinc-metallopeptidase
MFFHWSYLLLIPGMILVFWAQQRVQSTYRKYSEIPSKMGMTGAQVAKTILDRMGIYDVAIEHIPGELTDHYDPSAKAVRLSDVVYNSNSLAAAAVAAHECGHVLQDVKGYKPMNVRAALVPAVNLGANFGPILIMAGLFIGAFKFLIPLGIALFAAVIIFHVVTLPVEFDASNRALRLIDELGILQGEENQGARKVLNAAAFTYVATALYALLQLVQYILIAMGQRD
>NZ_AP017308.1|WP_068393535.1|4654644_4654845_+|prevent-host-death-family-protein
MIQLNPEFLKKNGKPEFVVLPYEEFLLLQDLLEDLEDSQDLRQAKMEEIDAPTLSLVDVKQRLNLQ
>NZ_AP017308.1|WP_068388265.1|4652905_4654483_+|NADH-quinone-oxidoreductase-subunit-M
MSIEHFPWLTTIILFPIVASLAIPFLPDKDGKTVRWYSLVVGLIDFLLIVYTFYTQYDFSNPDLQLVERYSWVPQIGLSWSVGVDGLSMPLVILTGFITTLAILAAWPVTFKPRLFYFLMLVMYGGQIAVFAVQDMLLFFLSWELELVPIYFLLSIWGGKKRLYAATKFILYTAGGSLFILVAALAMAFYGDTPTFDMQTLANKQFPLTFQLWIYAAFLIAYAVKLPIIPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALIRMNAEMLPAAHAIVAPALVILGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIASFTDLGLSGAVLQMVSHGLIGASLFFLVGATYDRTHTLMLDEMGGVGKQMPKIFSMFTACSLASLALPGMSGFVAELMVFVGFATSDAYSLTFRVIVVGLAAIGVILTPIYLLSMLREIFYGPENKELTSHEVLIDAEPREVFIIASLLVPIIGIGFYPKMLTQIYDSKTIQLTARLRDEVPTLANRKEDTIAAQAVPAPAIR
>NZ_AP017308.1|WP_068388262.1|4650674_4652756_+|NAD(P)H-quinone-oxidoreductase-subunit-5
MEPIYQYAWLIPVLPLAGAMLVGLGLITFNKDVNKLRKANSIFIVSLMGATMTAAFAIFWSQYQGHEPYTRSIEWAAAGDFHLTMGYVIDPLSSLMLVIVTTVAFLVMIYTDGYMAHDPGYVRFYAYLSLFSSSMLGLVISPNLVQVYIFWELVGMCSYLLIGFWFYRKAAADACQKAFVTNRVGDFGLLLGILGLYWATRSFDFGEIGERLQDMVATGSLSGGIAALFAILVFLGPVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGVFLIARMFPVFEGIPTVMNVIAWTGCFTAFLGASIAITQNDIKKGLAYSTMSQLGYMVMAMGVGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEAVVGHDPVYAQDMRMMGGLRKYMPVTAITFLIGTLAICGIPPFAGFWSKDEILGSTFAVNPIMWSIAWSTAGITAFYMFRMYFSTFEGEFRGTNATVKQSIKNEQLQAAGLAFGPGAMDPRELTMDAEIGEAVDPGHDEHHSHEPHESPIAMTLPLMILAVPSVLIGLVGTPFANYFEHFIHAPGEAVQVAAEAGEESLNEFLIMGGNSVGIALIGITLASLMYLRGKIDPKAIAEKIPAVYRLSKNKWYFDEIYNEVFVQGSRRLARQVLEVDSKVVDGVVNLAGLVTLLTGEGLKYFENGRAQFYALIIFVAVLGLVVFSGVT
>NZ_AP017308.1|WP_068388279.1|4661346_4662504_+|FAD-binding-oxidoreductase
MRTYDWIVIGAGITGASLGYELTQQGFSVLLLDRDPNPPSATRFSYGGIAYWSGTTDLTRQLCAEGKTIHQNLSAKLEADTEFREIDLLLTIAPESNPETLIQNYSHFADPPKFLTVEAACELEPLLNPNGIAGGLTVKHGHIDAEKTTRAYISAMQQSTGTYKLATVTGLVKGGVSTTEGDFFAANTVVCIGALTRHFLKQSGLSIAQYFTHAEIIEIPQSNLRLNTLVMPAEAERFKLEAEATRDDAVWDQPGQEPAPAILDAGAVQFQDSRIIIGQVSRTLTDPNAAIDQVQSEAKLRQKISRVMPKVGELEGTWQHCLIAFSRDRLPLVGAVPGAEGVYVFSGFSNPLAIVPPLARRFAIQAKGERDPLLQQVSLDRFVSL
>NZ_AP017308.1|WP_068388281.1|4662500_4663064_-|Uma2-family-endonuclease
MSQATNRVYWTTEDLKLLPESSNRYEIIDGHLLMTRAPHWKHQKAIGQAYQVLNVWSGRSELGQTVPTPGVIFDDADNVIPDVIWISNERLASGIDEEGHFTIAPELIIEVLSPGTQNERRDRETKLKLYAERGVQEYWILDWRIQQLEVYRRQDALLKLVLTLFAQDRLTSPLLPEFECAVAEFFR
>NZ_AP017308.1|WP_068388286.1|4663106_4664006_-|alpha/beta-fold-hydrolase
MGFVSKRNCLFLGLKVLSIAYLSACLLLFIFQRQLIYRPSSQMAMLPSASEFKMPFQEVWISVKHDRIYSWWIPAPSNQEQFIPIANEPTRILKAPKVMLYFCGVGRNMGDYNYLARMQAFRQLGFSVLVFDYRGYGRSTGNFPTEQQIYEDAEAVLNHLRQTVPADQIVIYGESLGGAIALDLAIKHPEAKGLILQSTFTSIAEVTKQRGVFGLFPIDILLTERFNSIEKIRSLKVPVLFLHGTRDSVVPMQMSQTLYNAASEPKQLFLIPNADHVRIYQPGNASYLKAIQGFVDSLK
>NZ_AP017308.1|WP_068388289.1|4664095_4664344_-|UPF0175-family-protein
MSVVISDEILQASQLSPSEFRQEIALYLFQTGRLTLGYASELANLSIHDFRQLLSQRNIPLYSYDVEDFELDLKNLKELGRL
>NZ_AP017308.1|WP_068388293.1|4664518_4665541_-|restriction-endonuclease
MSDIWFVRAGRESVYADEFIQKKVIAIGWTDLGEVDKTLIKANLVPLYKQAYPTQSDGSIQVAVSQIIRFMQEIKVGDEVMTHDRSKQMYYIGTITSDYQWKPEIIAELPRIREVEWKYQIPRTSLSSDTKNTLGAIQTLFLIKGKPTTEIHSKQQAIQQTPSVPTSPALLIQTQEQNELEREIRAELLEKSEQAIEDRIARLQWEQVQELCAGILRAMGYRTTVSSRGADRGVDVFASPDGLGLEEPRIFVEVKHRPNTSMGSQDIRSFIGGRSAGDRCLYVSTGGYTKEARYEADRSSIPITLLGIVELRKLFVDYYEKLDEEVKSLIPLKRIYVLAD
>NZ_AP017308.1|WP_068388296.1|4665678_4666764_-|recombinase-RecA
MAAKTTTTTETNDKQKALNLVLTQIERNFGKGSIMRLGDATRMKVETIPTGALTLDLALGGGLPKGRVIEIYGPESSGKTTLALHAVAEVQKAGGIAAYVDAEHALDPNYSAALGVDIANLLISQPDTGESALEIVDQLVRSTAVDVVVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGQALKYYASVRLDIRRIQTLKKGTEEFGTRAKVKVAKNKVAPPFRIAEFDIIFGKGISTLGCLVDLAEETNVLVRKGAWYSYKGENISQGRDNAIKYMEERPELAKELEVQVREKLEMGAQVSANSVGQVDEHDNEEEALDEE
>NZ_AP017308.1|WP_068388299.1|4666925_4668176_+|exodeoxyribonuclease-VII-large-subunit
MTAKLPNLLVPDTALTVAGLTAYIQSLIEQDDQLRQVWLTGEVSSATRYRSGLFFTLQDPDAKAAIQCVIWNSQLHKLTTLPAPGEQLILLGRVHVQPHRGSYQLIVWQALPAGEGLRALRSRQLKDRLEAEGLFDSDRKRPIPAHPQTVAVVTSPQAAAWGDIQRTLKRRYPGLRVLFSPALVQGDQAPASIVSAIERVERDGRADVLILSRGGGAIEDMVCFNDENVVRAIANCSILVIAGIGHQRDESLSDLAADVMAHTPTAAAEQAVPCLSDLYELHHNRLEALNLAVLQYMSVEHDRLSGLHKRMSRLKLDRALKQETQVISWLRQRLIQSTQSRFQTASQHCQMLQEKLTTLDPEAVLKRGYAVVRAESGIVRSTDDVQIGEDLTIQLGKGQIDVTVTSVSVQSEDETV
>NZ_AP017308.1|WP_068388302.1|4668201_4668456_+|exodeoxyribonuclease-VII-small-subunit
MNQSSNAKPEKITRLATESWNYEETVAKVERILTRIESGELELADVFEEFSAAVNYLRQCESFLAERQKQVDLLIETLTDEAEF
>NZ_AP017308.1|WP_068388305.1|4668492_4669650_-|hypothetical-protein
MFQDASIDELPVLLDRLPDSAPDLFHDAHDWLDDEIPPLEKSLDTDWVVQPLSTIQTPVFSCLQTLRFDHSVRRILIHPNQDILFTVGSPTRNSSPESTNTIQAWNWRSSNRVLTFKGHTAPIRTIALSQDGKILVSGSDDRTIKVWNALTGEELSTLNQESSVTAIALSPDGKTLVSSGCDNYQICDRQLQITKRDRVLRIWNLSEGEIIHTLPCLTDVPMLMMGKCGKVLLKYEQQLEAVNLETGRTIPRLNWLKDCEQVLAIASDWESAATVLDRQVTIRKVTTGEVQCRIELDLFDRAIQVSALSSDGKWFAAGFQRTEIHPRHHHYVTRQNVLRIWNTQTGKQVECSSELGQGIWQSIGFSSQGRSMITSVGNSIKIWQF
>NZ_AP017308.1|WP_068388308.1|4669780_4670761_-|ABC-transporter-ATP-binding-protein
MDSAVASRLQLPTFERSIALQTYELSKTYRTGFWMNKKVASLNSVSLTVYEGETFGLLGQNGAGKTTLLKTLLGIVRPTAGRATVLGEPLGDRSVKQRIGYLPENPYFYDYLTGWEVLNFTGDLFGIERSQQRKRIPELLDLVGLAQSAAKKKQLRQYSKGMLQRIGLAQALINDPDLVFLDEPMSGLDPLGRYQMREIILSLKSQGKTIFFNSHVLSDVEKICDRVALLAKGELIAIGSMQDLLGTAEHYQVTVKGGRPEMLNQWIPNLDLQDGLWTGQLHGQPEDFLGSLRLMNAQLISIELARPSLEEFFVRQLRERGIESSR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_AP017308_3	3.1\|1544669\|22\|NZ_AP017308\|CRISPRCasFinder	1544669-1544690	22	NZ_AP017308.1	1544759-1544780	1	0.955

1. spacer 3.1|1544669|22|NZ_AP017308|CRISPRCasFinder matches to position: 1544759-1544780, mismatch: 1, identity: 0.955

ccgtaaatctgctccactaaaa	CRISPR spacer
ccgtaaatctgctccacaaaaa	Protospacer
***************** ****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP017308_3	3.1\|1544669\|22\|NZ_AP017308\|CRISPRCasFinder	1544669-1544690	22	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	334863-334884	2	0.909
NZ_AP017308_3	3.1\|1544669\|22\|NZ_AP017308\|CRISPRCasFinder	1544669-1544690	22	NZ_CP016476	Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence	221900-221921	2	0.909
NZ_AP017308_10	10.2\|3155548\|34\|NZ_AP017308\|CRISPRCasFinder	3155548-3155581	34	NZ_CP017759	Cupriavidus necator strain NH9 plasmid pENH92, complete sequence	304967-305000	9	0.735
NZ_AP017308_5	5.1\|2276735\|34\|NZ_AP017308\|CRISPRCasFinder	2276735-2276768	34	MT774401	CrAssphage cr6_1, complete genome	40486-40519	10	0.706
NZ_AP017308_8	8.5\|3148130\|35\|NZ_AP017308\|PILER-CR	3148130-3148164	35	MN013090	Erwinia phage vB_EamM_TropicalSun, complete genome	61535-61569	11	0.686
NZ_AP017308_5	5.4\|2276734\|36\|NZ_AP017308\|PILER-CR	2276734-2276769	36	MT774401	CrAssphage cr6_1, complete genome	40484-40519	12	0.667

1. spacer 3.1|1544669|22|NZ_AP017308|CRISPRCasFinder matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.909

ccgtaaatctgctccactaaaa	CRISPR spacer
tcataaatctgctccactaaaa	Protospacer
.*.*******************

2. spacer 3.1|1544669|22|NZ_AP017308|CRISPRCasFinder matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.909

ccgtaaatctgctccactaaaa	CRISPR spacer
tcgtaaatctgcaccactaaaa	Protospacer
.*********** *********

3. spacer 10.2|3155548|34|NZ_AP017308|CRISPRCasFinder matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 9, identity: 0.735

gtacgtgctcaaagtggggcttgacgaagttaag	CRISPR spacer
cgccgttctcaaagtggggcatgacgaaataggg	Protospacer
   *** ************* *******.* ..*

4. spacer 5.1|2276735|34|NZ_AP017308|CRISPRCasFinder matches to MT774401 (CrAssphage cr6_1, complete genome) position: , mismatch: 10, identity: 0.706

cctagagatttgtttgcttctaatgtatccgcag	CRISPR spacer
aatagagatttgtttgattataatgtattttata	Protospacer
  ************** ** ********..   .

5. spacer 8.5|3148130|35|NZ_AP017308|PILER-CR matches to MN013090 (Erwinia phage vB_EamM_TropicalSun, complete genome) position: , mismatch: 11, identity: 0.686

gactcccgatactggagtgattatggatggattta	CRISPR spacer
ccttgagaatgctggagtgattatgggtggattcg	Protospacer
  .*   .**.***************.******..

6. spacer 5.4|2276734|36|NZ_AP017308|PILER-CR matches to MT774401 (CrAssphage cr6_1, complete genome) position: , mismatch: 12, identity: 0.667

tgcctagagatttgtttgcttctaatgtatccgcag	CRISPR spacer
gtaatagagatttgtttgattataatgtattttata	Protospacer
    ************** ** ********..   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1087239 : 1094091

Indivirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_084762151.1\|1087239_1088304_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	6.9e-42	44.4
WP_068381250.1\|1088286_1088511_-	hypothetical protein	NA	NA	NA	NA
WP_068381253.1\|1088655_1089333_+	deoxyribonuclease V	A0A2K9V7A2	Bandra_megavirus	2.5e-21	34.3
WP_068381256.1\|1089376_1090501_-	AAA family ATPase	Q4Z932	Staphylococcus_phage	2.5e-05	25.9
WP_068381259.1\|1090497_1091286_-	RNA ligase family protein	NA	NA	NA	NA
WP_068381262.1\|1091437_1092190_-	nucleotidyltransferase domain-containing protein	K4K696	Caulobacter_phage	1.7e-10	35.6
WP_068381264.1\|1092183_1092930_-\|tRNA	tRNA 5'-guanylyltransferase	A0A0K2D0E0	Bacillus_phage	2.1e-24	32.5
WP_068381267.1\|1092890_1093373_-	ATP-binding protein	NA	NA	NA	NA
WP_071837075.1\|1093374_1094091_-	hypothetical protein	A0A0M3UK85	Mycobacterium_phage	2.1e-10	28.0

DBSCAN-SWA_2

1118599 : 1170552

Hokovirus(33.33%)

integrase,transposase

attL 1129510:1129569|attR 1171042:1172193

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068380630.1\|1118599_1119406_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_068381318.1\|1119760_1120147_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_068392746.1\|1120179_1122513_-	CHAT domain-containing protein	NA	NA	NA	NA
WP_068392753.1\|1122875_1123538_+	response regulator transcription factor	NA	NA	NA	NA
WP_068381321.1\|1125791_1126337_+	hypothetical protein	NA	NA	NA	NA
WP_068381325.1\|1126317_1127715_+	NCS2 family permease	NA	NA	NA	NA
WP_068381328.1\|1127768_1129052_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_068381331.1\|1129090_1129462_-	hypothetical protein	NA	NA	NA	NA
1129510:1129569	attL	NA	NA	NA	NA
WP_068381335.1\|1129520_1130087_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_068381338.1\|1130058_1130598_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_068381341.1\|1130893_1132534_-	hypothetical protein	NA	NA	NA	NA
WP_068380590.1\|1132539_1133685_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_068381344.1\|1133780_1135886_-	hypothetical protein	NA	NA	NA	NA
WP_068381347.1\|1136007_1136376_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	A0A222YX16	Synechococcus_phage	1.0e-16	46.3
WP_068381350.1\|1136428_1136650_-	hypothetical protein	NA	NA	NA	NA
WP_068381352.1\|1136642_1136960_-	DUF4258 domain-containing protein	NA	NA	NA	NA
WP_068381355.1\|1136956_1138279_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_068381358.1\|1139136_1141167_+	CHASE2 domain-containing protein	A0A1V0SGX0	Hokovirus	2.7e-26	34.3
WP_068381362.1\|1141163_1141712_-	NUDIX hydrolase	NA	NA	NA	NA
WP_068381365.1\|1141715_1143212_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_071837248.1\|1143232_1143436_+	hypothetical protein	NA	NA	NA	NA
WP_068381368.1\|1143432_1143654_+	hypothetical protein	NA	NA	NA	NA
WP_068381371.1\|1143715_1144195_-	hypothetical protein	NA	NA	NA	NA
WP_068381374.1\|1144372_1144675_-	hypothetical protein	NA	NA	NA	NA
WP_068381377.1\|1144674_1145721_-	ABC transporter permease	NA	NA	NA	NA
WP_068381380.1\|1145758_1146271_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	6.7e-35	46.4
WP_068381383.1\|1146382_1146736_+	hypothetical protein	NA	NA	NA	NA
WP_068392756.1\|1146776_1147421_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_068381386.1\|1147763_1148063_+	hypothetical protein	NA	NA	NA	NA
WP_068381389.1\|1148046_1149114_+	tocopherol cyclase	NA	NA	NA	NA
WP_068381393.1\|1149460_1150741_+\|integrase	site-specific integrase	Q774Z5	Bordetella_phage	2.1e-08	27.6
WP_068381396.1\|1151119_1151785_-	hypothetical protein	NA	NA	NA	NA
WP_068381399.1\|1152468_1152762_-	hypothetical protein	NA	NA	NA	NA
WP_068381402.1\|1152766_1153126_-	hypothetical protein	NA	NA	NA	NA
WP_068381406.1\|1153548_1154568_-	AMIN domain-containing protein	NA	NA	NA	NA
WP_068381408.1\|1154675_1157390_-	GAF domain-containing protein	NA	NA	NA	NA
WP_068381411.1\|1157568_1158861_-	hypothetical protein	NA	NA	NA	NA
WP_068381414.1\|1158875_1159085_-	hypothetical protein	NA	NA	NA	NA
WP_068381417.1\|1159273_1160575_+	hypothetical protein	NA	NA	NA	NA
WP_068381420.1\|1160566_1161673_-	response regulator	W8CYM9	Bacillus_phage	6.8e-16	36.6
WP_068381423.1\|1161762_1164213_-	CHASE2 domain-containing protein	A0A1V0SGX0	Hokovirus	1.7e-43	33.2
WP_068381426.1\|1164209_1164914_-	DUF928 domain-containing protein	NA	NA	NA	NA
WP_068381430.1\|1164931_1167145_-	CHAT domain-containing protein	NA	NA	NA	NA
WP_068381433.1\|1167141_1170030_-	S-layer family protein	NA	NA	NA	NA
WP_068381338.1\|1170012_1170552_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
1171042:1172193	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1699990 : 1709160

Mycobacterium_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068382464.1\|1699990_1700446_+	HNH endonuclease	G1BSJ4	Mycobacterium_virus	1.5e-06	45.0
WP_068382466.1\|1700437_1701454_-	sulfate/molybdate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.1e-28	35.1
WP_068382468.1\|1701595_1702165_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.5e-32	46.5
WP_058998577.1\|1702433_1702622_-	photosystem II reaction center protein PsbZ	NA	NA	NA	NA
WP_084761967.1\|1702728_1704420_+	CBS domain-containing protein	A0A223LEL9	Aeromonas_phage	5.3e-20	35.0
WP_068382470.1\|1704447_1705092_+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA	NA	NA	NA
WP_068382472.1\|1705088_1706444_-	response regulator	A0A1J0GWE0	Alteromonas_phage	6.8e-10	23.4
WP_068382474.1\|1706445_1709160_-	CHASE2 domain-containing protein	A0A1V0SGX0	Hokovirus	5.3e-46	34.2

DBSCAN-SWA_4

2611293 : 2661808

Emiliania_huxleyi_virus(11.11%)

protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071837118.1\|2611293_2612121_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_068383646.1\|2612134_2612416_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_068383648.1\|2612694_2613072_+	hypothetical protein	NA	NA	NA	NA
WP_068383653.1\|2613322_2613658_+	STAS domain-containing protein	NA	NA	NA	NA
WP_068383655.1\|2613742_2616304_+	TIGR03960 family B12-binding radical SAM protein	NA	NA	NA	NA
WP_068383661.1\|2616713_2618819_+	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_068383663.1\|2618818_2619460_+	ribonuclease HII	D2TEQ2	Emiliania_huxleyi_virus	9.4e-26	38.7
WP_068383665.1\|2619443_2620022_-	DUF1997 domain-containing protein	NA	NA	NA	NA
WP_068383666.1\|2620197_2621043_+	prephenate dehydratase	NA	NA	NA	NA
WP_084762169.1\|2621015_2622635_-	DUF697 domain-containing protein	NA	NA	NA	NA
WP_068383668.1\|2622782_2623589_-	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_068382115.1\|2623896_2624979_-	photosystem II q(b) protein	A0A127KM98	Cyanophage	2.8e-192	90.5
WP_068393057.1\|2625152_2626190_-	hypothetical protein	NA	NA	NA	NA
WP_068383670.1\|2626517_2627258_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_068383672.1\|2627279_2628251_+	7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG	NA	NA	NA	NA
WP_068383674.1\|2628196_2629054_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_068383676.1\|2629123_2630461_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.5e-139	57.7
WP_068383678.1\|2630470_2631166_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.3e-57	59.1
WP_068383680.1\|2631324_2632728_-	trigger factor	NA	NA	NA	NA
WP_068393060.1\|2633035_2634076_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_068383682.1\|2634100_2634997_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_068383683.1\|2635087_2636848_+	ribonuclease J	NA	NA	NA	NA
WP_068383684.1\|2637261_2637804_+	NYN domain-containing protein	NA	NA	NA	NA
WP_068383685.1\|2638003_2638210_+	hypothetical protein	NA	NA	NA	NA
WP_084762170.1\|2638278_2638866_+\|tail	phage tail protein	A0A0M4QWS3	Salmonella_phage	1.8e-52	53.8
WP_068383689.1\|2638900_2639398_-	hypothetical protein	NA	NA	NA	NA
WP_068383690.1\|2639429_2639735_-	hypothetical protein	NA	NA	NA	NA
WP_084761998.1\|2639928_2644581_-	glutamate synthase large subunit	NA	NA	NA	NA
WP_068383692.1\|2645129_2646914_+	phosphodiester glycosidase family protein	A0A291LB83	Escherichia_phage	5.1e-05	35.0
WP_068393066.1\|2647076_2647487_+	cupin domain-containing protein	NA	NA	NA	NA
WP_068393069.1\|2647593_2647926_+	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA
WP_068383694.1\|2648061_2648448_+	30S ribosomal protein S12	NA	NA	NA	NA
WP_068383696.1\|2648628_2649099_+	30S ribosomal protein S7	NA	NA	NA	NA
WP_068383697.1\|2649166_2651302_+	elongation factor G	E4ZFJ7	Streptococcus_phage	4.9e-63	26.1
WP_068383699.1\|2651325_2652555_+	elongation factor Tu	A0A2H4UVR3	Bodo_saltans_virus	1.6e-10	25.5
WP_068383701.1\|2652663_2652870_+	hypothetical protein	NA	NA	NA	NA
WP_071837289.1\|2652933_2653023_+	hypothetical protein	NA	NA	NA	NA
WP_068383703.1\|2653196_2653715_+	hypothetical protein	NA	NA	NA	NA
WP_068383708.1\|2653784_2654009_-	hypothetical protein	NA	NA	NA	NA
WP_068383710.1\|2654253_2654622_-\|protease	clan AA aspartic protease	NA	NA	NA	NA
WP_068383712.1\|2654625_2654892_-	hypothetical protein	NA	NA	NA	NA
WP_017288044.1\|2655043_2655361_+	30S ribosomal protein S10	NA	NA	NA	NA
WP_068383714.1\|2655466_2656114_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA
WP_068383716.1\|2656302_2657280_+	hypothetical protein	NA	NA	NA	NA
WP_068383718.1\|2657323_2659342_-	VacB/RNase II family 3'-5' exoribonuclease	Q0GXV6	Lactococcus_phage	3.9e-17	23.7
WP_059000004.1\|2659447_2659663_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_071837119.1\|2659741_2659936_-	50S ribosomal protein L33	NA	NA	NA	NA
WP_068383719.1\|2660182_2660563_+	hypothetical protein	NA	NA	NA	NA
WP_068383720.1\|2660559_2660991_+	hypothetical protein	NA	NA	NA	NA
WP_068383722.1\|2661164_2661440_+	hypothetical protein	NA	NA	NA	NA
WP_068383726.1\|2661436_2661808_+\|protease	clan AA aspartic protease	NA	NA	NA	NA

DBSCAN-SWA_5

3128448 : 3188634

Prochlorococcus_phage(14.29%)

transposase,protease,integrase,tRNA

attL 3130686:3130732|attR 3147354:3147400

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068384494.1\|3128448_3129411_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	4.5e-08	28.1
WP_068384496.1\|3129465_3129963_+	hypothetical protein	NA	NA	NA	NA
WP_068384498.1\|3130007_3130193_+	hypothetical protein	NA	NA	NA	NA
WP_068384500.1\|3130179_3130572_+	type II toxin-antitoxin system death-on-curing family toxin	A0A1B3AYM0	Gordonia_phage	1.0e-11	46.8
3130686:3130732	attL	NA	NA	NA	NA
WP_068384501.1\|3131142_3132246_+\|integrase	tyrosine-type recombinase/integrase	G9BWC1	Planktothrix_phage	3.7e-54	37.4
WP_068384503.1\|3132342_3132582_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_068384505.1\|3132599_3135281_-	hypothetical protein	U5XGR4	Phormidium_phage	1.2e-103	49.1
WP_068384507.1\|3135974_3136379_-	hypothetical protein	NA	NA	NA	NA
WP_068384509.1\|3136375_3136597_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_068384511.1\|3137034_3137319_+	hypothetical protein	NA	NA	NA	NA
WP_068384513.1\|3138046_3138352_+	hypothetical protein	NA	NA	NA	NA
WP_068384515.1\|3138476_3138974_+	hypothetical protein	NA	NA	NA	NA
WP_068384517.1\|3138967_3139705_+	hypothetical protein	NA	NA	NA	NA
WP_068384519.1\|3139778_3141188_+	hypothetical protein	NA	NA	NA	NA
WP_068384521.1\|3141592_3142639_+	hypothetical protein	NA	NA	NA	NA
WP_068384523.1\|3142638_3142908_+	hypothetical protein	NA	NA	NA	NA
WP_068384525.1\|3143178_3143394_+	hypothetical protein	NA	NA	NA	NA
WP_068384527.1\|3143471_3144098_-	hypothetical protein	NA	NA	NA	NA
WP_068384529.1\|3145246_3145852_-	hypothetical protein	NA	NA	NA	NA
WP_068384531.1\|3145844_3146201_-	hypothetical protein	NA	NA	NA	NA
WP_068384533.1\|3146206_3146419_-	hypothetical protein	NA	NA	NA	NA
WP_068384535.1\|3146476_3146938_-	hypothetical protein	NA	NA	NA	NA
WP_068384537.1\|3147856_3148048_-	hypothetical protein	NA	NA	NA	NA
3147354:3147400	attR	NA	NA	NA	NA
WP_068384539.1\|3148242_3148482_-	hypothetical protein	NA	NA	NA	NA
WP_068393183.1\|3148545_3148944_-	PIN domain-containing protein	NA	NA	NA	NA
WP_068384541.1\|3148940_3149192_-	hypothetical protein	NA	NA	NA	NA
WP_068384544.1\|3151320_3151743_-	hypothetical protein	NA	NA	NA	NA
WP_068384546.1\|3151745_3152558_-	type III-B CRISPR module RAMP protein Cmr4	NA	NA	NA	NA
WP_068384548.1\|3152589_3153651_-	hypothetical protein	NA	NA	NA	NA
WP_068384550.1\|3153643_3155329_-	hypothetical protein	NA	NA	NA	NA
WP_068384552.1\|3155355_3155679_-	hypothetical protein	NA	NA	NA	NA
WP_068384555.1\|3155731_3156166_+	hypothetical protein	NA	NA	NA	NA
WP_068384557.1\|3156174_3156618_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_068384559.1\|3156725_3157184_-	hypothetical protein	NA	NA	NA	NA
WP_068384561.1\|3158481_3159606_-\|transposase	transposase	G9CU70	Helicobacter_phage	4.0e-72	42.9
WP_071837133.1\|3159642_3159771_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_068384566.1\|3160927_3161407_-	hypothetical protein	NA	NA	NA	NA
WP_068384568.1\|3161434_3161860_-	hypothetical protein	NA	NA	NA	NA
WP_068379386.1\|3162121_3163243_+\|transposase	transposase	NA	NA	NA	NA
WP_068384570.1\|3163227_3166128_+	hypothetical protein	NA	NA	NA	NA
WP_068384572.1\|3166218_3166593_+	hypothetical protein	NA	NA	NA	NA
WP_068384574.1\|3166674_3167109_-	hypothetical protein	NA	NA	NA	NA
WP_068384576.1\|3167148_3167766_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_068384578.1\|3169099_3169546_-\|transposase	DDE transposase family protein	NA	NA	NA	NA
WP_068384580.1\|3169597_3170053_-	hypothetical protein	NA	NA	NA	NA
WP_068384582.1\|3170242_3170632_-	hypothetical protein	NA	NA	NA	NA
WP_068393186.1\|3170686_3171832_-	murein transglycosylase	NA	NA	NA	NA
WP_068384584.1\|3171888_3173313_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_068384586.1\|3173408_3173609_+	hypothetical protein	NA	NA	NA	NA
WP_068384588.1\|3173646_3175191_+	S8 family serine peptidase	NA	NA	NA	NA
WP_068384590.1\|3175261_3179770_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_068384592.1\|3179930_3180275_+	hypothetical protein	NA	NA	NA	NA
WP_068384594.1\|3180388_3181051_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.4e-24	36.4
WP_068384596.1\|3181402_3181909_+	bifunctional nuclease family protein	NA	NA	NA	NA
WP_068384597.1\|3181915_3183010_+	aldo/keto reductase	NA	NA	NA	NA
WP_068384599.1\|3183035_3183629_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_068384601.1\|3183625_3185431_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_068384603.1\|3185535_3186777_+	MFS transporter	NA	NA	NA	NA
WP_068384605.1\|3186909_3188634_+\|protease	ATP-dependent zinc metalloprotease FtsH	E5ESM9	Bathycoccus_sp._RCC1105_virus	3.8e-106	40.6

DBSCAN-SWA_6

3323657 : 3357770

Acinetobacter_phage(33.33%)

plate,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068384991.1\|3323657_3324908_+\|transposase	transposase	A0A1L2BWU7	Bacteriophage	6.8e-97	46.9
WP_068384995.1\|3324991_3325405_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_084762027.1\|3325422_3326838_+	xanthine dehydrogenase small subunit	A0A0P0IVM8	Acinetobacter_phage	6.3e-75	35.7
WP_068385001.1\|3326834_3329159_+	xanthine dehydrogenase molybdopterin binding subunit	A0A0P0I429	Acinetobacter_phage	8.2e-197	48.6
WP_068385004.1\|3329155_3330019_-	FkbM family methyltransferase	A0A0A0V284	uncultured_virus	3.3e-10	32.9
WP_068385007.1\|3330052_3333076_-\|tail	tail fiber domain-containing protein	H6WFW1	Cyanophage	1.3e-08	25.8
WP_068385015.1\|3333087_3337515_-	hypothetical protein	NA	NA	NA	NA
WP_068385018.1\|3337511_3342365_-\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_068385021.1\|3342357_3344811_-\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_068385025.1\|3344812_3345184_-	GPW/gp25 family protein	NA	NA	NA	NA
WP_068385028.1\|3345186_3345510_-	hypothetical protein	NA	NA	NA	NA
WP_068393216.1\|3345510_3346317_-	hypothetical protein	NA	NA	NA	NA
WP_068385033.1\|3346327_3347476_-	hypothetical protein	NA	NA	NA	NA
WP_068385035.1\|3347477_3347768_-	hypothetical protein	NA	NA	NA	NA
WP_068385037.1\|3347773_3348445_-	hypothetical protein	NA	NA	NA	NA
WP_068385039.1\|3348668_3349103_+	hypothetical protein	NA	NA	NA	NA
WP_068385041.1\|3349110_3349344_-	hypothetical protein	NA	NA	NA	NA
WP_068385043.1\|3349371_3349878_-	hypothetical protein	NA	NA	NA	NA
WP_084762028.1\|3349946_3350930_-	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_068385045.1\|3350926_3352885_-	ATP-binding protein	A0A109WUE1	Acidianus_tailed_spindle_virus	8.4e-09	33.1
WP_068385047.1\|3352881_3354087_-	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_068385050.1\|3354083_3356498_-	hypothetical protein	NA	NA	NA	NA
WP_068385053.1\|3356497_3357232_-\|plate	phage baseplate protein	NA	NA	NA	NA
WP_068385056.1\|3357233_3357770_-\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_7

3508161 : 3520758

uncultured_phage(28.57%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068385477.1\|3508161_3513282_+	tape measure protein	A0A1D8KT32	Synechococcus_phage	2.9e-29	41.6
WP_068385480.1\|3513292_3513733_+	hypothetical protein	NA	NA	NA	NA
WP_068385482.1\|3513729_3514215_+\|tail	phage minor tail protein L	A0A1Z1LX42	Escherichia_phage	6.9e-05	32.2
WP_068385485.1\|3514214_3514943_+	hypothetical protein	D6PGG7	uncultured_phage	2.5e-11	33.6
WP_068385488.1\|3514932_3515526_+	hypothetical protein	F1C572	Cronobacter_phage	2.7e-11	30.6
WP_068385491.1\|3515528_3517022_+	host specificity protein J	F1C571	Cronobacter_phage	1.1e-88	36.3
WP_068385494.1\|3518174_3519995_+	hypothetical protein	D6PIZ4	uncultured_phage	8.5e-40	27.8
WP_068385498.1\|3520002_3520758_+	hypothetical protein	Q58N20	Prochlorococcus_phage	4.8e-05	29.3

DBSCAN-SWA_8

3528847 : 3537610

Acanthamoeba_polyphaga_moumouvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068385525.1\|3528847_3530143_-	SDR family oxidoreductase	L7RDT8	Acanthamoeba_polyphaga_moumouvirus	2.4e-44	34.7
WP_068385528.1\|3530372_3532883_-	polynucleotide kinase-phosphatase	A0A172Q076	Acinetobacter_phage	5.1e-11	27.4
WP_068385531.1\|3532879_3534241_-	3' terminal RNA ribose 2'-O-methyltransferase Hen1	A0A1V0SF26	Hokovirus	6.9e-10	27.4
WP_068393246.1\|3534410_3535463_-	LOG family protein	F4YCQ1	Synechococcus_phage	1.4e-18	36.6
WP_071837307.1\|3535669_3536020_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	1.2e-19	45.6
WP_068393251.1\|3536446_3537610_-	GuaB3 family IMP dehydrogenase-related protein	A0A1B1IS93	uncultured_Mediterranean_phage	1.4e-11	33.3

DBSCAN-SWA_9

4443037 : 4451268

Escherichia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068387725.1\|4443037_4444126_-	dTDP-glucose 4,6-dehydratase	K7QJG5	Escherichia_phage	2.9e-80	44.4
WP_068387730.1\|4444131_4445205_-	glucose-1-phosphate thymidylyltransferase	K7QKA7	Escherichia_phage	1.5e-39	39.2
WP_068387733.1\|4445201_4446089_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_068387743.1\|4446085_4446628_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.4e-53	53.4
WP_068387747.1\|4446862_4448167_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	3.2e-12	25.2
WP_068387750.1\|4448174_4449239_+	glycosyltransferase family 2 protein	A0A0F7L2F7	uncultured_marine_virus	1.8e-05	29.4
WP_068387751.1\|4449287_4450253_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	2.9e-10	36.2
WP_068387752.1\|4450344_4451268_+	glycosyltransferase family 8 protein	A0A2P0VP84	Tetraselmis_virus	1.7e-07	24.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage