CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014251	Listeria monocytogenes strain CFSAN010068 plasmid pCFSAN010068_01, complete sequence	1 crisprs	csa3	0	1	4	0
NZ_CP014250	Listeria monocytogenes strain CFSAN010068, complete genome	2 crisprs	DinG,cas3,WYL,casR,RT,DEDDh,csa3	0	0	6	1

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014251_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014251_1

33647-33722

Orphan

Consensus_repeat	Method
TGAGAAGATCACCAATAAAACTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014251_1

>merge|NZ_CP014251|1|33647-33722|CRISPRCasFinder
TGAGAAGATCACCAATAAAACTTCTCGAATACGATTGGTTTTTTATTTTTTCTGTGAAGATCACCAATAAAACTTC

>NZ_CP014251|1|1|33647-33722|CRISPRCasFinder
TGAGAAGATCACCAATAAAACTTC	TCGAATACGATTGGTTTTTTATTTTTTC
TGTGAAGATCACCAATAAAACTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014251.1\|WP_031670161.1\|36936_38163_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP014251.1\|WP_031644351.1\|34179_34674_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014251.1\|WP_002389568.1\|27333_28014_+\|IS6-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP014251.1\|WP_031670070.1\|34658_34958_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014251.1\|WP_031644158.1\|35041_35320_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014251.1\|WP_003728498.1\|35491_36094_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP014251.1\|WP_031659855.1\|33010_33580_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341213
NZ_CP014251.1\|WP_109909798.1\|38334_39423_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|223897
NZ_CP014251.1\|WP_003728481.1\|25345_26710_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181958
NZ_CP014251.1\|WP_003728479.1\|23870_24110_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014251.1\|WP_003728514.1\|23046_23301_-\|transposase	unknown	unknown	gnl\|CDD\|225511
NZ_CP014251.1\|WP_003750113.1\|23550_23871_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014251.1\|WP_003759339.1\|32640_32901_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NZ_CP014251.1\|WP_003755398.1\|36170_36968_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181681
NZ_CP014251.1\|WP_109909797.1\|39464_39809_-\|TnpV-protein	unknown	unknown	unknown
NZ_CP014251.1\|WP_031670069.1\|33783_34161_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014251.1\|WP_003728480.1\|24230_25100_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270357
NZ_CP014251.1\|WP_011011011.1\|40521_40920_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014251.1\|WP_003725276.1\|29555_29831_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014251.1\|WP_031670068.1\|31644_32634_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP014251.1\|WP_003759339.1\|32640_32901_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	9.51839e-06
NZ_CP014251.1\|WP_003755398.1\|36170_36968_-\|AAA-family-ATPase	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	5.31228e-71
NZ_CP014251.1\|WP_031670161.1\|36936_38163_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.46653e-65
NZ_CP014251.1\|WP_002389568.1\|27333_28014_+\|IS6-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.58692e-90
NZ_CP014251.1\|WP_109909798.1\|38334_39423_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	5.57052e-19
NZ_CP014251.1\|WP_003728480.1\|24230_25100_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.02896e-112
NZ_CP014251.1\|WP_003728498.1\|35491_36094_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.60253e-54
NZ_CP014251.1\|WP_031659855.1\|33010_33580_-\|hypothetical-protein	gnl\|CDD\|341213	cd17493, toxin_TenpN, type III toxin-antitoxin system toxin TenpN and similar proteins. TenpN-like toxin component of a type III toxin-antitoxin (TA) system, which consists of a ribonuclease (RNase) toxin that processes its structured and specific cognate RNA antitoxin, which in turn then directly inhibits the toxin. TA systems have been associated with many important phenotypes, like phage resistance, maintenance of genomic islands, and formation of bacterial persister cells.	2.62765e-26
NZ_CP014251.1\|WP_003728481.1\|25345_26710_-\|hypothetical-protein	gnl\|CDD\|181958	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.	2.69712e-88
NZ_CP014251.1\|WP_003728514.1\|23046_23301_-\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.34234e-05

>NZ_CP014251.1|WP_031659855.1|33010_33580_-|hypothetical-protein
MDKRVLQGMNDKPYKYQVVRLKKEFFQSNPHFINMLDPGNPEKQMRRTYLYLDIQKDHYHYLIPFRSHLNHRNGVATPSKDRPKAGLDYSHTLIVKDSTHIQTAFISNDQYREVKNKIRPIYTRTSRYISDFMNAYKKGIVLDLPKYQNSTLINFVGYLEKEWTKQVPLQDRKQTQKVKENNRPKKYRF
>NZ_CP014251.1|WP_003759339.1|32640_32901_-|helix-turn-helix-transcriptional-regulator
MRLYEEPDVRIRINIKGICEKYKLTMGELSRRTDIEPSKISAYANDRRQRVQITHLERICQSLHIRDMNELFILEVLEDEQVDNKE
>NZ_CP014251.1|WP_031670068.1|31644_32634_-|hypothetical-protein
MRTVEDILYDKQSAIFLLAELYETHEKEHEDHKEGTLITCEICRQIETCSILIRRLEQELLQKKDEIRAEEKRHAKDLLKWHYIKYPLNATNLERILHWQKMFSKRMFDELTRMGWSVEEIQRRYDIPDFFFKRWLFKKGLYAVVPLILRVRTIDDRIFIYKVFQEADLNLLLTLDDIVMKSYDRIEREDWKHVYFWHHGAYHHLEQIIVQSEFGKVGETVYHAEEQLGCKKKATDQVIFYDGFNQEAVAFFCEENEMKRLVKGNRLLINTRYGTITLFPGEYVVKEITGRFVKYSANQFSQLYEILDTIRPMGLVSETSSYNEYTNKI
>NZ_CP014251.1|WP_003725276.1|29555_29831_-|hypothetical-protein
MSTFLVYIQIKNYENQANNLIEVQKQTQNLLDQQQRLALQDKKLLEEYKAEIKELKSLTTQSTPATLSKDVNQPKDIEIDKKKRRWWPFGK
>NZ_CP014251.1|WP_002389568.1|27333_28014_+|IS6-family-transposase
MNHFKGKQFQKDVIIVAVGYYLRYNLSYRDVQEILYNRGINVSHTTVYRWVQEYGKLLYNIWKRKNKQSIYSWKMDETYIKIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLVKQFDEPRVLVTDKAPSIASAFKKLQAHGFYQRTEHRTVKYLNNLIEQDHRPIKRRNKFYRSLRTASTTIKGMEAIRGLYKKNRKEGTLFGFSVCTEMKILLGIPA
>NZ_CP014251.1|WP_003728481.1|25345_26710_-|hypothetical-protein
MKYVIVGTSHAGFEAVQTLLKKDSDAEIVVFEAGSTASFLSCGIQSYLEDISKSLDELHYANEASYKEQGVDIRMNTSVIAINPETKEITTRTTDGVEATESYDKLLLSPGGVPGTIPNVDDQHENIFYLRGRNWADKVKNRMSSAKKAVVVGAGYIGIEAAIAYAQAGIDVTVVDFVDSILPTYLDSEFTSLLTKHMEEKGMKIKTGEGVKEFKVNENNEVTAVVTDKGTYEADTVIISVGVRPNTQWLKDTLTLDGRGFVEVNEHMETSVKDVYAAGDATAIPFAPTNDKAYIALATNARRQGVIMARHASGDADAKIGRVNGTSGLAVFDYKFATTGIKDANANSYQGNVKSVYKEDLIRPSFMHDEEKVLMKLHYDADNGRILGAQLMSTYDILQAINAVSVAIEAEWTVDQLAQADFFFQPEFSRPWNFLNVLAQEAQGQPYGADTMLF
>NZ_CP014251.1|WP_003728480.1|24230_25100_+|glycine-betaine-ABC-transporter-substrate-binding-protein
MFKKMSLLVATVIGLLFTFGSEDSYKTTVGADSGGQTVTLATVNWESEIASTNVLAQVLKEAGFNVQITTVDPAIMFSSVAEGQLDAMVGGWVPTTHQAYAEKYGDSMVDLGANLEGAISALTVPTYMEDINSITDLTDENDSTITAIEPGAGVTNSAQNAVKEYDNLSDWEVSVSSTGAMIAELDQAINNEEDIVVVGWKPHWMFMDYDLKMLDDPENVFGGYEEIHSYAREGLKEDNPEAYKIIDNFYWEVEDMSSVMEELATDVEPEEAADNWIEANRETVDGWLE
>NZ_CP014251.1|WP_003728479.1|23870_24110_-|hypothetical-protein
MNTVEASQETIWFTLINTVHQDFLFYRLISEIEIKKIKSIKSGTLFTQGEPRSLIVHILSRLWWLDIIQRMIVAKILMS
>NZ_CP014251.1|WP_003750113.1|23550_23871_-|hypothetical-protein
MEFFGKKDISGKMISFFSSVMTNNKNIRLGIISGIKKLYDADLIPYHREQFRTSIMYFNLMGGVRILEILSFEEVEEITIELLKEKIVSLTKISKFFKKHNKYPLK
>NZ_CP014251.1|WP_003728514.1|23046_23301_-|transposase
MPKRYTEDFKQTILDLHEQGQTPRQLAADYEVGYSTILKWIQGNTPISPGGPTSNEVKRLKKQLKEKDEELLILKKALGLLAKK
>NZ_CP014251.1|WP_031670069.1|33783_34161_-|hypothetical-protein
MQVVQGLFHFVDWIVEGIMQVGMIILALLGKGCLTFLHFLGDQFQASSNGTKFIYAIAIAVTILIILYFTWHILLMSAFVLAIVIPLFLFVGKIAVSILLGATVIFVVRWLVVTAKNVYQTKIAQ
>NZ_CP014251.1|WP_031644351.1|34179_34674_-|hypothetical-protein
MVHLLNSQVVVYRKEKEAALKMLPLYKHDLFLELSMPSKGITLIKEAPLQTTDKKEIKRYKIVTLPQRNRDILVLEQDVAGDSDDYLTFMCLDQALSIEMVQAYLAELEMIINDEIYMIICSDEDTGMVRQQRYSIGREKTIHILEHDFDMVQEEAMLALDMAL
>NZ_CP014251.1|WP_031670070.1|34658_34958_-|hypothetical-protein
MQNEVDVIVDVRCYLPDMCYSYDPIHGRTVCIRKDIIGTFVALGRSVPPERLNKVMNLTPLQVEAMEYGSKSGFDKIESNHILVSKLSKEMGERKWYIF
>NZ_CP014251.1|WP_031644158.1|35041_35320_+|hypothetical-protein
MILFLYIERRALMENKELQDWIYENLLTRQEAMKITKQSKPAFDQSIRTGLIQPFFQKGEQRQMIRLYLKQDIEAYAARIAERQAKSRNSKN
>NZ_CP014251.1|WP_003728498.1|35491_36094_-|IS3-family-transposase
MDLPKMSTVKPRFRYQKPTVSSTCPNLLKQQFHSKQPNRIWVSDISYIPVKKGFVYLCVILDIFSRKVIAWNVYASMTAKLVCDTVERAVHSRNPVQSVIFHSDRGSQYLSQELRQVQEKYNLIPSYSKLAYPWDNAVTESFFKYMKKEELNRRNFSSLEEVKLACFEYIEGFYNSKRPHSANNFLSPNLKELAFLNDSS
>NZ_CP014251.1|WP_003755398.1|36170_36968_-|AAA-family-ATPase
MIIYMHMTIYKEEMMSHYHQLLNQLNELNLSCMKENLPAHLDEVAKSDKSLVDSLFELTQQEISYRKKESQKKVLKRAMFPYHKRLHDFNFDFQPRIKKKEMQDLLTLRFLDTYDNILFIGNSGVGKTHLAVSIGLECIDRGLSCLFITSTELVNRLIRAHKRGTSETMLKKYSGYSVLIIDEVGYLPFSKEGSNLLFQLINMRYERKSTIVTTNIPLSQWSEIFGNKKLTNALLDRLVHHSKLIQITGPSYRMKSYSENKEVKS
>NZ_CP014251.1|WP_031670161.1|36936_38163_-|IS21-family-transposase
MRKDVLEGVLRHIMNEIHPNFAALAKQYNCDYRTVKRYYEAGLTGDLDKLRERKPSVPPLLHGFEEIIRDKLELNCSAASIFYFLGKKGYKGSYTTIKRYCRKYREEKVQKATIRIETTPGLSAQVDWKENVKMVSRDGEVFYFNIFLYILGYSRMKYLELTFDRTQPTVFQCLVNAFEYCGNGIPQEIWFDNMKTVVDRSKSQFTQTVFNEKFRQFAKDAGFHPIACRPFRPQTKGKVEALARTVERLMVFNYEFTDVQELKQIIYELMQDLNGSVSQAIHNKPTVLLKEELPILAPIHRLELLSYVSRNKRLLRKVSMESMVQYQNAKYSVPVKYIGKEVTLDIRRDNLFVWYGDKCIRTHPISEKALNYQREDSLEILRSDVFKYLEDEELERFVDDNLHAYDDL
>NZ_CP014251.1|WP_109909798.1|38334_39423_-|class-I-SAM-dependent-methyltransferase
MPVSERGEQVDLFAEETNYMEDPGISYLDDNEEESVENFRFADTFTFPSGPKAKFQANIAAIRLLHRLETENRFANSEERNILAQYSGWGGLADAFDENKLAFQKEYLELKELLTPEEYQAAFEGTLTTYYTEPALIDRMYQVLQGLNVEPEKILEPSMGIGHFFGRLPKVYQTASLTGVEIDKLSGRIAKKLYPKAAIQLKGFEEMNSQSNTFDIAIGNIPFNDFNVTDKSKRYPHKLIHDYFFEKSLDLVKPGGYILFVTSKGTMDKKDSRARHYLAQRADLISAVRLPNTAFSGLGGTKATTDILLLQKLEKERSVVEDIPEWVQTTGFQDSQGRINTYFYNHPEKVLGELKLSGMYGG
>NZ_CP014251.1|WP_109909797.1|39464_39809_-|TnpV-protein
MTESNLKMSYREENGNLLPEIETSEEMMSIGKIGKLIQLKWEKEKSLQVMKWKLNGNYLQEVKRMEIQVQDKINQYYEKLVTKESLPPEMEPLARAKRLKSLRMQAEEIILNQL
>NZ_CP014251.1|WP_011011011.1|40521_40920_-|hypothetical-protein
MSIIQGFLDICDRIAYFFGELVSIIVTSILLVIENVFTALYHAYQASGQMKWAWWTVMTILACMIVVFIIRYFIIVAVATLFLVPLMAFFVKAFLTIVVATFLLTIVFIIIYKGKTSISKWMRARRSQQEGA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	NC_014496	Listeria grayi plasmid pLGUG1, complete sequence	46849-46876	0	1.0
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	NZ_CP014251	Listeria monocytogenes strain CFSAN010068 plasmid pCFSAN010068_01, complete sequence	33671-33698	0	1.0
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	NC_003383	Listeria innocua Clip11262 plasmid pLI100, complete sequence	76945-76972	0	1.0
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	NZ_CP014253	Listeria monocytogenes strain CFSAN023459 plasmid CFSAN023459_01, complete sequence	2166-2193	0	1.0
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	NZ_CP014254	Listeria monocytogenes strain CFSAN023459 plasmid CFSAN023459_02, complete sequence	48614-48641	0	1.0
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	MH277333	UNVERIFIED: Listeria monocytogenes strain nh1 plasmid, complete sequence	35594-35621	0	1.0
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	NZ_CP022021	Listeria monocytogenes strain FDA709873-33 plasmid pCFSAN021445, complete sequence	69188-69215	1	0.964
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	NZ_CP041212	Listeria monocytogenes strain LMP18-H2446 plasmid pCFSAN074383, complete sequence	60429-60456	1	0.964
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	NC_022045	Listeria monocytogenes strain N1-011A plasmid, complete sequence	80023-80050	1	0.964
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	NZ_MH382833	Listeria welshimeri strain 40/07 plasmid pLIS1, complete sequence	15276-15303	1	0.964
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	NZ_CP020834	Listeria monocytogenes strain CFSAN004330 plasmid pCFSAN004330, complete sequence	39426-39453	1	0.964
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	NZ_CP042875	Bacillus cereus strain 09 plasmid unnamed1, complete sequence	482281-482308	5	0.821
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	AP013917	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S38-C100, * SEQUENCING IN PROGRESS *	19310-19337	6	0.786
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	AP013911	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S26-C111, * SEQUENCING IN PROGRESS *	19310-19337	6	0.786
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	AP013915	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S33-C106, * SEQUENCING IN PROGRESS *	19310-19337	6	0.786
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	AP013916	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S36-C111, * SEQUENCING IN PROGRESS *	19316-19343	6	0.786
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	AP013914	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S32-C111, * SEQUENCING IN PROGRESS *	20480-20507	6	0.786
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	AP013912	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S27-C97, * SEQUENCING IN PROGRESS *	20477-20504	6	0.786
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	AP013927	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S45-C110, * SEQUENCING IN PROGRESS *	1864-1891	6	0.786
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	AP013563	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C1E-MedDCM-OCT-S31-C3, * SEQUENCING IN PROGRESS *, 3 ordered pieces	15535-15562	6	0.786
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	AP013910	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S24-C93, * SEQUENCING IN PROGRESS *	1854-1881	6	0.786
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	AP013922	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S41-C271, * SEQUENCING IN PROGRESS *	1854-1881	6	0.786
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	AP013924	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S42-C110, * SEQUENCING IN PROGRESS *	2314-2341	6	0.786
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	AP013920	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S40-C105, * SEQUENCING IN PROGRESS *	1864-1891	6	0.786
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	AP013925	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S43-C124, * SEQUENCING IN PROGRESS *	1864-1891	6	0.786
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	MN693047	Marine virus AFVG_25M111, complete genome	30020-30047	6	0.786
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	MN693506	Marine virus AFVG_25M112, complete genome	29781-29808	6	0.786
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	NZ_CP032461	Lactobacillus plantarum strain ATG-K2 plasmid pK2-1, complete sequence	24147-24174	6	0.786
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	39121-39148	6	0.786
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	MN693446	Marine virus AFVG_25M550, complete genome	9689-9716	6	0.786
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	KY421186	Flavobacterium phage FL-1, complete genome	46709-46736	7	0.75
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	MK773491	Salmonella phage 7t3, complete genome	254592-254619	7	0.75
NZ_CP014251_1	1.1\|33671\|28\|NZ_CP014251\|CRISPRCasFinder	33671-33698	28	MT001829	Salmonella phage SE_PL, complete genome	94146-94173	7	0.75

1. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to NC_014496 (Listeria grayi plasmid pLGUG1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgattggttttttattttttc	Protospacer
****************************

2. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to NZ_CP014251 (Listeria monocytogenes strain CFSAN010068 plasmid pCFSAN010068_01, complete sequence) position: , mismatch: 0, identity: 1.0

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgattggttttttattttttc	Protospacer
****************************

3. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to NC_003383 (Listeria innocua Clip11262 plasmid pLI100, complete sequence) position: , mismatch: 0, identity: 1.0

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgattggttttttattttttc	Protospacer
****************************

4. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to NZ_CP014253 (Listeria monocytogenes strain CFSAN023459 plasmid CFSAN023459_01, complete sequence) position: , mismatch: 0, identity: 1.0

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgattggttttttattttttc	Protospacer
****************************

5. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to NZ_CP014254 (Listeria monocytogenes strain CFSAN023459 plasmid CFSAN023459_02, complete sequence) position: , mismatch: 0, identity: 1.0

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgattggttttttattttttc	Protospacer
****************************

6. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to MH277333 (UNVERIFIED: Listeria monocytogenes strain nh1 plasmid, complete sequence) position: , mismatch: 0, identity: 1.0

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgattggttttttattttttc	Protospacer
****************************

7. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to NZ_CP022021 (Listeria monocytogenes strain FDA709873-33 plasmid pCFSAN021445, complete sequence) position: , mismatch: 1, identity: 0.964

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgcttggttttttattttttc	Protospacer
********* ******************

8. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to NZ_CP041212 (Listeria monocytogenes strain LMP18-H2446 plasmid pCFSAN074383, complete sequence) position: , mismatch: 1, identity: 0.964

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgcttggttttttattttttc	Protospacer
********* ******************

9. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to NC_022045 (Listeria monocytogenes strain N1-011A plasmid, complete sequence) position: , mismatch: 1, identity: 0.964

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgcttggttttttattttttc	Protospacer
********* ******************

10. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to NZ_MH382833 (Listeria welshimeri strain 40/07 plasmid pLIS1, complete sequence) position: , mismatch: 1, identity: 0.964

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgcttggttttttattttttc	Protospacer
********* ******************

11. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to NZ_CP020834 (Listeria monocytogenes strain CFSAN004330 plasmid pCFSAN004330, complete sequence) position: , mismatch: 1, identity: 0.964

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgcttggttttttattttttc	Protospacer
********* ******************

12. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to NZ_CP042875 (Bacillus cereus strain 09 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.821

tcgaatacgattggttttttattttttc	CRISPR spacer
ttatatacgattgtttttttattctttc	Protospacer
*.. ********* *********.****

13. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to AP013917 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S38-C100, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

14. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to AP013911 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S26-C111, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

15. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to AP013915 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S33-C106, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

16. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to AP013916 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S36-C111, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

17. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to AP013914 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S32-C111, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

18. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to AP013912 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S27-C97, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

19. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to AP013927 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S45-C110, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

20. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to AP013563 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C1E-MedDCM-OCT-S31-C3, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

21. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to AP013910 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S24-C93, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

22. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to AP013922 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S41-C271, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

23. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to AP013924 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S42-C110, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

24. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to AP013920 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S40-C105, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

25. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to AP013925 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S43-C124, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

26. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to MN693047 (Marine virus AFVG_25M111, complete genome) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ttagaaacgattggttttttatcttttt	Protospacer
*...* ****************.****.

27. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to MN693506 (Marine virus AFVG_25M112, complete genome) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ttagaaacgattggttttttatcttttt	Protospacer
*...* ****************.****.

28. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to NZ_CP032461 (Lactobacillus plantarum strain ATG-K2 plasmid pK2-1, complete sequence) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
acgaaaacgattggttttttagttaatg	Protospacer
 **** *************** **  *

29. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
taatatatgattggttttttatcttttg	Protospacer
* . ***.**************.****

30. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to MN693446 (Marine virus AFVG_25M550, complete genome) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ttagacacgattggttttttatgttttt	Protospacer
*...*.**************** ****.

31. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to KY421186 (Flavobacterium phage FL-1, complete genome) position: , mismatch: 7, identity: 0.75

tcgaatacgattggttttttattttttc	CRISPR spacer
aaaaataccattggttttttattttgat	Protospacer
  .***** ****************  .

32. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to MK773491 (Salmonella phage 7t3, complete genome) position: , mismatch: 7, identity: 0.75

tcgaatacgattggttttttattttttc	CRISPR spacer
ttttatatgattggttttttattttaca	Protospacer
*.  ***.***************** .

33. spacer 1.1|33671|28|NZ_CP014251|CRISPRCasFinder matches to MT001829 (Salmonella phage SE_PL, complete genome) position: , mismatch: 7, identity: 0.75

tcgaatacgattggttttttattttttc	CRISPR spacer
ttttatatgattggttttttattttaca	Protospacer
*.  ***.***************** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 28014

Streptococcus_phage(46.67%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031645742.1\|704_1049_-	hypothetical protein	NA	NA	NA	NA
WP_011011045.1\|1206_1887_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	5.5e-93	69.5
WP_031670319.1\|2191_6844_-	DEAD/DEAH box helicase	A0A2H4UTW8	Bodo_saltans_virus	1.6e-50	28.3
WP_031670320.1\|7386_8547_-	replication initiation protein	A0A1V0E006	Clostridioides_phage	2.3e-06	25.2
WP_011011045.1\|8804_9485_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	5.5e-93	69.5
WP_031645006.1\|9998_10646_-	type III secretion system protein EcsC	NA	NA	NA	NA
WP_031645005.1\|10790_11405_-	recombinase family protein	A0A219YA40	Aeromonas_phage	3.7e-11	31.6
WP_060869056.1\|11839_14755_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	2.1e-173	36.6
WP_003728468.1\|14758_15313_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	7.0e-38	53.4
WP_003728467.1\|15592_15952_+	Cd(II)-sensing metalloregulatory transcriptional repressor CadC	E4ZFI8	Streptococcus_phage	3.1e-26	50.0
WP_003728466.1\|15951_18087_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.6e-247	64.5
WP_002319817.1\|18226_18907_+\|transposase	IS6-like element ISS1N family transposase	A0A1X9I6C6	Streptococcus_phage	2.5e-109	84.1
WP_003728476.1\|19026_20910_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	5.6e-87	35.3
WP_003769220.1\|21372_22098_-\|transposase	transposase	NA	NA	NA	NA
WP_003769259.1\|22162_23032_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	7.1e-69	51.1
WP_003728514.1\|23046_23301_-\|transposase	transposase	Q6J1X3	Lactobacillus_phage	1.6e-13	46.4
WP_003750113.1\|23550_23871_-	hypothetical protein	NA	NA	NA	NA
WP_003728479.1\|23870_24110_-	hypothetical protein	NA	NA	NA	NA
WP_003728480.1\|24230_25100_+	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003728481.1\|25345_26710_-	hypothetical protein	A0A2K5B2C5	Erysipelothrix_phage	1.9e-07	23.5
WP_002389568.1\|27333_28014_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	2.6e-119	90.7

DBSCAN-SWA_2

35491 : 42874

Lactococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728498.1\|35491_36094_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.0e-33	41.7
WP_003755398.1\|36170_36968_-	AAA family ATPase	A0A059NT77	Lactococcus_phage	3.3e-81	63.2
WP_031670161.1\|36936_38163_-\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	2.8e-135	60.6
WP_109909798.1\|38334_39423_-	class I SAM-dependent methyltransferase	A0A248SL14	Klebsiella_phage	8.6e-64	41.2
WP_109909797.1\|39464_39809_-	TnpV protein	NA	NA	NA	NA
WP_011011011.1\|40521_40920_-	hypothetical protein	NA	NA	NA	NA
WP_003728486.1\|41093_41429_+	helix-turn-helix transcriptional regulator	A0A139ZPK3	Marinitoga_camini_virus	2.8e-05	35.0
WP_003728487.1\|41465_41996_-	hypothetical protein	NA	NA	NA	NA
WP_003728488.1\|42109_42874_-	Fic family protein	A0A0G3Y4Q5	Ostreid_herpesvirus	2.6e-06	29.4

DBSCAN-SWA_3

47549 : 50221

Lactococcus_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728496.1\|47549_48776_+\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	4.7e-135	60.6
WP_003755398.1\|48744_49542_+	AAA family ATPase	A0A059NT77	Lactococcus_phage	3.3e-81	63.2
WP_003728498.1\|49618_50221_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.0e-33	41.7

DBSCAN-SWA_4

53658 : 54633

Enterococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728501.1\|53658_54633_+	AAA family ATPase	F0PIG8	Enterococcus_phage	2.4e-33	35.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP014250

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014250_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014250_1

535396-535980

Orphan

Consensus_repeat	Method
GATGTAAGTAATTTTGATACNAGTTCAGTAACTNATATG	CRT

7 spacers

The CRISPR arrays of NZ_CP014250_1

>merge|NZ_CP014250|1|535396-535980|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATGTGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTGGATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATGTCTTACATGTTTTATGATAATAGAAACCTTGAGGTGCTGGATGTAAGCAACCTTGATACCGGTTCAGTAACTAATATGTATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTGGATGTAAGTAATTTTGATACGAGTTCAGTAACTGATATGTATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTAGATGTAAGTAATTTCGATACCAGTTCCGCTACTGCAATGGTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTGGATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATGCGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGCGTTAGATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATGGCTGCCATGTTTTCTGATAATGAAAAACTGGAGAAGCTTGATTTAAGTACCTTTGATACCAGTTCAGTGACTAACATG

>NZ_CP014250|1|1|535396-535980|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATG	TGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTG
GATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATG	TCTTACATGTTTTATGATAATAGAAACCTTGAGGTGCTG
GATGTAAGCAACCTTGATACCGGTTCAGTAACTAATATG	TATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTG
GATGTAAGTAATTTTGATACGAGTTCAGTAACTGATATG	TATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTA
GATGTAAGTAATTTCGATACCAGTTCCGCTACTGCAATG	GTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTG
GATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATG	CGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGCGTTA
GATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATG	GCTGCCATGTTTTCTGATAATGAAAAACTGGAGAAGCTT
GATTTAAGTACCTTTGATACCAGTTCAGTGACTAACATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014250.1\|WP_003721252.1\|538766_539240_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014250.1\|WP_023550313.1\|532521_534603_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP014250.1\|WP_003721253.1\|539259_539745_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014250.1\|WP_009929138.1\|522172_523321_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP014250.1\|WP_003727318.1\|539772_540078_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273478
NZ_CP014250.1\|WP_003731249.1\|546522_548286_+\|RNA-directed-DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|238824
NZ_CP014250.1\|WP_003725186.1\|520016_522176_-\|transglutaminase	unknown	unknown	gnl\|CDD\|376628
NZ_CP014250.1\|WP_003734632.1\|519144_519900_-\|DUF4866-domain-containing-protein	unknown	unknown	gnl\|CDD\|379782
NZ_CP014250.1\|WP_003725199.1\|540153_540420_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014250.1\|WP_003725208.1\|544053_545157_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|237717
NZ_CP014250.1\|WP_003728093.1\|527442_528543_+\|DUF917-domain-containing-protein	unknown	unknown	gnl\|CDD\|226065
NZ_CP014250.1\|WP_003728092.1\|528535_530086_+\|hydantoinase/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|223223
NZ_CP014250.1\|WP_003721271.1\|545883_546249_+\|heme-oxygenase-IsdG	unknown	unknown	gnl\|CDD\|183970
NZ_CP014250.1\|WP_003733207.1\|541532_542093_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379534
NZ_CP014250.1\|WP_003725189.1\|526158_527442_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|271377
NZ_CP014250.1\|WP_003728986.1\|542202_543903_+\|oleate-hydratase	unknown	unknown	gnl\|CDD\|227060
NZ_CP014250.1\|WP_003721242.1\|523325_524273_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP014250.1\|WP_023550311.1\|530719_532258_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|368260
NZ_CP014250.1\|WP_003740428.1\|524428_526024_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306
NZ_CP014250.1\|WP_003725209.1\|545246_545726_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226231

Protein	Function_ID	Function_description	E-value
NZ_CP014250.1\|WP_023550313.1\|532521_534603_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	3.76219e-29
NZ_CP014250.1\|WP_003734632.1\|519144_519900_-\|DUF4866-domain-containing-protein	gnl\|CDD\|379782	pfam16160, DUF4866, Domain of unknown function (DUF4866). This family consists of uncharacterized proteins around 250 residues in length and is mainly found in various human gut Firmicute species and abundant in human gut metagenomic datasets. The function of this family is unknown.	2.71521e-121
NZ_CP014250.1\|WP_009929138.1\|522172_523321_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.37557e-52
NZ_CP014250.1\|WP_003731249.1\|546522_548286_+\|RNA-directed-DNA-polymerase	gnl\|CDD\|238824	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	1.43128e-28
NZ_CP014250.1\|WP_003725186.1\|520016_522176_-\|transglutaminase	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	4.40206e-28
NZ_CP014250.1\|WP_003727318.1\|539772_540078_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	4.34504e-05
NZ_CP014250.1\|WP_003725208.1\|544053_545157_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|237717	PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional.	0
NZ_CP014250.1\|WP_003728093.1\|527442_528543_+\|DUF917-domain-containing-protein	gnl\|CDD\|226065	COG3535, COG3535, Uncharacterized conserved protein [Function unknown].	0
NZ_CP014250.1\|WP_003728092.1\|528535_530086_+\|hydantoinase/oxoprolinase-family-protein	gnl\|CDD\|223223	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	1.15698e-106
NZ_CP014250.1\|WP_003721271.1\|545883_546249_+\|heme-oxygenase-IsdG	gnl\|CDD\|183970	PRK13316, PRK13316, heme oxygenase IsdG.	3.55164e-70
NZ_CP014250.1\|WP_003733207.1\|541532_542093_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|379534	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region. This domain is a tetracycline repressor, domain 2, or C-terminus.	2.23521e-25
NZ_CP014250.1\|WP_003725189.1\|526158_527442_+\|cytosine-permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	2.40318e-96
NZ_CP014250.1\|WP_003728986.1\|542202_543903_+\|oleate-hydratase	gnl\|CDD\|227060	COG4716, COG4716, Myosin-crossreactive antigen [Function unknown].	0
NZ_CP014250.1\|WP_003721242.1\|523325_524273_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	7.47241e-102
NZ_CP014250.1\|WP_023550311.1\|530719_532258_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|368260	pfam05043, Mga, Mga helix-turn-helix domain. M regulator protein trans-acting positive regulator (Mga) is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This domain is found in the centre of the Mga proteins. This family also contains a number of bacterial RofA transcriptional regulators that seem to be largely restricted to streptococci. These proteins have been shown to regulate the expression of important bacterial adhesins. This is presumably a DNA-binding domain.	1.01429e-19
NZ_CP014250.1\|WP_003740428.1\|524428_526024_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.42853e-59
NZ_CP014250.1\|WP_003725209.1\|545246_545726_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	1.03205e-42

>NZ_CP014250.1|WP_023550313.1|532521_534603_+|BspA-family-leucine-rich-repeat-surface-protein
MKKFSMRVVLIISVLFIALGNANVSIAQERDTTNKLPEEELGSLDTSNLIAEEVAQEKPAEVENLEEIPTTDELMQNPEVREQPVADSDDPDLTAVSSGDYWTIYYNSANDEYSLRMFGNVPSSKPSAWNSYLKYIKHIEIEEATLTGDFSSYFRSNVFTVLESVRIERSNLSGVTSFARAFEGDSESESPLEKVIIRDNYYQETPSLTNISRMFTLCRKLSELDVSGLNTSSVTKMDTIFSNANSLKELDVSHFDTSSVTDMSSMFAACNSLEELDVSNFDTSSVTNMKYMLSGLHLKKLDVSNFDTSSVTNMYGMFAYCYNLEELDVSNFDTSSVNNMLHMFYVCNNLEELDLSNFDTSSVTNMFAMFAYCTSLKEIDVSNFDTSSVTTMSAMFFECSSLEALDLSNFDTSSVTTMASMFENSTALKSLYLDNFTDAASMTDMFKGTTSLTYLFVSHNLSTFNRLENTSWYDEKNWVQFSNLSQLQTYHRKQSEPTGYRKGAFLSLTMDAMGGEFEDAEEQKVQNKVSGEYWEEIVPVKEDYYFDGWYLDQNFTNKFDFSLPAAVSTTIYAKWVENYTVIIPASISLNEATELKVEGINRGSKALSVGLNRLATSVSESNELTLANTADTTVQCSAPLSWDGSENNPEKAILTLAPGSEITEGDAVMAIEAPENIQAGKYTGNLVFSINYE
>NZ_CP014250.1|WP_023550311.1|530719_532258_+|helix-turn-helix-domain-containing-protein
MREYLDSKSQKKVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKAFSIVHSAPNLSYTLKISDNCSIQLIINAYIRESPKFQILETLLLASFPNLQALAKKVHVSYSGIKKEIKELNEELRERNLSISTGNQVEITGDEFSLRIFYAFLFLVAYSGDRWPFSFVQYDEITDILESCPKEIYRANSIDKAMMIHYYVAMHLLRDRMNCQIDTTRQFKVALYKACTEESKKSESAFIKKVAKQLPNRNYKEMTYTTQIILSTIVAFGSYSSIEKMPSFFYMDEQLEEMGFMKLVDFASEQVNDNLSIPFSEKEMELLRYSFASINYRYFLLDNLINKFNNIVPGYTNLDRNIRKIHKVNHLEPLISQLVNLKEMDPLKPFEERLASDYLIILDKRIDFSIHTLPIKVTILSTISNETAVFDFMRYFSSYYNLEIINQVDPVVDLYISDFSVSPEVLTSLRINQPIIYVNTRWLESDYVKINDNLAKIARKKFIANKKN
>NZ_CP014250.1|WP_003728092.1|528535_530086_+|hydantoinase/oxoprolinase-family-protein
MYKIGIDVGGTNTDAVILDENQQLIHSVKMPTSEDIETGITESLHRVLSETGIDRSKVTHAMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPEDMVGFLSGKYKLTGGGYEYDGQVLSEINEAEIRETLASWKGEVESVAVVGVFSSLKNDQELAVQKIIEEELGADIPVSISSSVGSVGLIERENATILNAALFKVIAATSDGFEKALEQEGIAHAEIYLCQNDGTLMSLNYARQFPILTIACGPTNSIRGASYLAGLKDAMVLDVGGTTSDIGVLTDGFPRESSLAVDVGGVRTNFRMPDIISIGLGGGSIVREKDGDITIGPDSVGYRISEEALVFGGKTMTTTDIAVRLGRAEIGNPELVAHIPTDFAEKAYKKIAEMTEDAIDKMKTSSGSVSLVLVGGGSVIIPDEISGVAQIFRDKNGPVANAIGASISQISGQYEQIYIYSQIEREEALQDAEQKAREQATLAGAVTDSIEVVEVEEIPLAYHPGNATRLRVKVVGNLV
>NZ_CP014250.1|WP_003728093.1|527442_528543_+|DUF917-domain-containing-protein
MRYLDEQAIENIAIGAAFLGTGGGGDPYIGKMMALTAIKKHGPIKLLSPEEIADDDYFIPAAMMGAPSVLIEKFPKGDEFVRVFEKLGRYVGKEVKGTFPMEAGGVNSMIPIVVAAQLGLPMVDCDGMGRAFPELQMVTFHLDGISATPMAITDEKGNIGIMETIDNKWTERLARVTTVEMGASSLVSLYPCNGAQIKQSSIKNIVTLSEEIGKVIRETSMDEAEKLQKLLDVTHGYHLFEGKITDVVRETRAGFNFGRVKIDGLNKDTGSEVIVHFQNENLVAEKNGEPIAITPDLICMVDLETLMPVTTEALKYGKRVRVMALPADDAWRTDKGIETVGPRYFGYDVDFEPLEELVKKEERRHV
>NZ_CP014250.1|WP_003725189.1|526158_527442_+|cytosine-permease
MTEKKSVEQTQSWQSLAFVWTGAMICVPSLLVGGTLISGMPLWEAILIALLGYGVIVLFMIYQGMQSSDLGIPAVSVASQVFGEQGSKKIISILLAIACLGWFGIQANVCGAAFSQFLGIYGINLPVPVSSLIWGVIMLLSAIYGIRILSILNYIAVPVLLFVCIYGLVVSLNDGGLAIVENYKPAGSMSFMTGLAITIGSFALGAVIAGDYSQYTKSRKDVVKAAIVGILPSGVLMITVGAVLALTAGTADISVVFTNLGLPVLGIIGLILAAWTTNAVNAFSGGIAIINVFNISEKYHKVAVAVAGGLGTILAVIGILNHFVPIMSVLSAMVPPVAGVMIASYWIVQKGDKSKWAPVPGVNWLGVSSWLVGAVIAGIPVILTFFPELPQLPNQPLIGIILSLAVYLIGAKVLSGKTNNVENLEGK
>NZ_CP014250.1|WP_003740428.1|524428_526024_+|PucR-family-transcriptional-regulator
MSVKLADLMKLPSLKEAKVVSGKSGLSKLVSSISVLEYTEVALLEDDLFDNDEFYGSEIVVSAFVNIRDDVEAQCRTIERLHKVGEVALILYYVGIFVPKMDQKLIDFANELDFTIIVMPENEMSLRYSEVIYEVVEAIVKQEMTDTNFVTESLEQISSVRPPQRNIDTTLKILSDRTHTSLVLTDNSFQVINSITWPRTRHWDFERIIEASKQIGEHELVQLTLDERDFYTARKPIFQDGMQAMHLFMMKEKGVLTADVVMQITEVVQVFMNLWGRNYVEISTAELMKAILNDESVKMRRLGKILNVDVSSIKWMWLVKTEEIRDNEQVLAELKSFVASHFQVSLIDLFEDNIVVLLDNSVAQRDRTHTANEFAMMMKEHGIDLKITVCQGMEQTSDVQSAYSLVNEYKNAANAIYANKSIYSLQEIDFAAKCVEIVDRGELAIAEQMRPLKPLEDNDELIETLSVFLLEGESNYNQAAELLFLHKNTIKYRIQRINELLQYPATKIPESYNLYLAVAIRRILGGNNNNK
>NZ_CP014250.1|WP_003721242.1|523325_524273_-|MoxR-family-ATPase
MSIEPSIKIEEIINEVEKVIVGKRHVVKLSLTALLAGGHVLLEDVPGVGKTMMVRTLSKTIGVSFKRIQFTPDLLPADVTGVSIFNPETRDFEFRPGPVMGNIVLADEINRTAPRTQAALLEGMAENSVTVDGITRKLANPFFVMATQNPIEYEGTYALPEAQLDRFLLKINIGYPTVEEEMQLLTLKQYQDPLDQTQQVVTLSELLDLKNKAKQVFIDDVLKNYIIRLVDATRKHPSVALGISPRGSLAFMQAAQAFALIEGRDYVIPDDIQYLAPYIFTHRLILKSEAYYNEETAESIIASILKNTSVPVEKR
>NZ_CP014250.1|WP_009929138.1|522172_523321_-|DUF58-domain-containing-protein
MLKKRLLLAFRWIIMLIIYAGLWTYTLFQGDTASWFLTYFFSFILLLLFLSSIYPLKAWKVNRRFVKNTYHDGDLIDMQVSFTRKSRYPVGYLLFQQKIPASFGNVSARQQVVYPLFKKHFTVTLAGFVGVRGIHSFPPVDVETSDAFGLLERSRQLSSEKSLTIYPTYFPDVLEKISEASPENERNAAYWTLKKNSNLHSLREFSSGDRISLIDWKSSAKSDQLMTREFENSATSRLSVIFYGASHPNFELSLRAAYSFIRKISEDNGEIRVTLLGDQTSKFAPAKGTSRLQDISTAFAEIAPVDSLTLQESLDSNLHSGEKILLFTPCIDTMLMQKVTRLTDNKQLQIITFQSEHSKAMDAPAIFLEPASLLSRWEREAK
>NZ_CP014250.1|WP_003725186.1|520016_522176_-|transglutaminase
MKRYLTLVMLFILSVLLISEWIYPFAELTELSTANWIILFITLSLGSFFLRLKYYWTIPLHIVMIIFVSGIYYAKGGILAGNWFVSFFQITFNGFRDMVQFRSSDISMDFILIVFLIALWLLSYITTYSILRKQRVMSVLVLTVAYLAVINTFTDYNSNWAIVRTVLEGFLLLHLALASRIAAPNRISADSLKRNGLFYHIFVILLLAVFVFSSLMLPKKAPIFPDPVPTIKNALGINTTRTVGYSEDDTTLGGALKKDNATVFTARAEKGHYWRVESKTVYTGTGWANANSADVISFSSGDNFPIQLTEQTTGATNTAEISFASSNDYMPYPYGTQTVNGAVDSFSANLTIERVGPVDTIKNYTVQLKTPVYNIEKMQNADFSTLSNAFVSQYTQTPKDLPDRVTKLANKVTKDADSIYDKTKAIERYLSASGTFTYSTEDAKETPRGADYVDQFLFETQIGYCDNFSTSMVVMLRSLGIPARWAKGYTPGEGEKKENDAKTTYTITNNNAHSWPEVFFPGTGWVPFEPTATFSNPENFQEPTTETANKPETPNDSTSTPETPNTADKTPEQDNGSSSTGETPKKEEPKTETAASNFEIPSWVWWIPAGLVVTLLALAIIFRRRIRRYLLLRSLRNSPEFGKTYHRLMKLLASYGYVRESSETLRHFSTRVDAELTTTEFSRLTKMYEAQIYSNNLTEKVITAEETQLVQQVIARLTK
>NZ_CP014250.1|WP_003734632.1|519144_519900_-|DUF4866-domain-containing-protein
MTTIFPKEQNVAPLFEQILANPTACRRFKDVFLDNLESYQETRGFEKDDTLFAKIILSAYRQSDVSALLLGVCGRTLFELLRQAFLIPKKLTVDNPFFLTDKEGNFIAKKDDISNREQEKFQEIYQSDLHHSETTIFLVDDDDIIHSYEPDFSISTKRINKKRGILVLYSLPDTLKLGMTESEVYAFIWKTFLHIQEIIPSSRIFYGQETSENADELGVFLPIHHFEKKMLQNIEQVNELVDALREQMVNK
>NZ_CP014250.1|WP_003721252.1|538766_539240_+|hypothetical-protein
MKKKRVVIISLLLLLVSVIGISSYFLFKDKINLLDVDHSAVDWNGKKQKDTSGEENTIAIPGFEKVTLYANETKQAVNFHNPEINDCYFKISLIHPDGSVLWISDLIEPGKGMYSIELEKTLAVGEYENAVLKYECFSLNDQSPLNGSEINLKLVVV
>NZ_CP014250.1|WP_003721253.1|539259_539745_+|hypothetical-protein
MNKLVLSTLSVAAMGMVFFSGGTAYAADKEGNTVVEYSVEGDYTLVVPEKVNLSNDNATEMSVKTINRNLEPGKEVEVTLSSGLSADGEIELQRVGAISDVITSSFKSNNSVVPMANPVIGSFSGYAMEETEVSKIQIGNPQGDKKAGAYQTTLTFTAAFK
>NZ_CP014250.1|WP_003727318.1|539772_540078_+|LPXTG-cell-wall-anchor-domain-containing-protein
MKRKLVLAMVLISFCGMFFLSPDRVQASQTVVEVLISEDDLDVSEENIQEIPKKELAASSDKDNKQPILPKAGDTVTNYTLLGLVLVLIWLIMQRKRKKKE
>NZ_CP014250.1|WP_003725199.1|540153_540420_+|hypothetical-protein
MARIEYGEEIQKSLLVLYSRGSTIDSICKEYGIPRYEFHKWMKLHDADKLETKEVKTFLQIRELKQQKNKLEEEILFLNEAINLLESP
>NZ_CP014250.1|WP_003733207.1|541532_542093_+|TetR-family-transcriptional-regulator
MAESLITKKAIAGGLMELCQHKRFEKISIADITNICGLNRQTFYYHFTDKYDLLTWTYENDFFHCLADGITLGNWDKHVLKMLESIKENADFYKNTVSADASILSFCFSKLTNSLFMDLFEKIDTNGAVNEADRVFYAEFFSYGCSGVLIKWITRGFKEAPETIANQLFRLAKDTEFLANSMYREN
>NZ_CP014250.1|WP_003728986.1|542202_543903_+|oleate-hydratase
MKNKKRTLVALTGAAIGTGIAAKKISEQKAAEKERAVDEAIKARYYGDKQVYFVGGGIASLAGAVYLIRDANFDGKNIHIIEGMHILGGSNDGAGSVEHGFVCRGGRMLNEETYENFWDLFSSIPSLDMPNFSVTEEILNFDHLHPTHAQARLVDKDRNILDAHSMGFNNNDRMLMTKLLATPEEKLDNLTIRDWFDEHFFETNFWYMWQTTFAFQKWSSLFEFRRYMNRMMLEFSRIDTLEGVTRTPLNQYESLILPLKTFLDKHHVDFTINQTVEDIDFKDAPGITATALHLSDGSTIELGPDDDVIMTNACMTDSATLGDMNTPAPKPEEKPISGELWYKVAQKKPNLGNPEPFFGHEEETNWQSFTVTCHGDKLLKRIERFTGNIPGSGALMTFKDSNWLMSTVVAAQPHFKAQDANTTIFWGYGLYPDRVGDFVKKPMKECTGEEILYELMCHLNWQDDFEEIKADIINVIPCYMPYIDAQFEPRAMSDRPAVVPEGSTNFAMISQFVEIPKDMVFTEEYSVRAARIAVYTLLDIDKKICPVTPHNRDPKVLAKATQTMFR
>NZ_CP014250.1|WP_003725208.1|544053_545157_+|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MEKSSIYGLTWTKLTEWLEAHGQKKFRATQVWDWLYRKRVKTFEEMSNVPKETIELLTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNLIETVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMKQKQAAAEE
>NZ_CP014250.1|WP_003725209.1|545246_545726_+|AraC-family-transcriptional-regulator
MEVEIVERNAFTAVGKKRTFSVENDAQKEKISQFWQEANTNGDAERINELAEFATIDGILGVCKMNGDKMDYYIAIESELTPPADMEKLIIPASKWAIFKSVGPLPSAIQKVWEYIYGEWFQTSNYAHGNAPELEVYTEGDTTAADYYSEVWIPVVEKE
>NZ_CP014250.1|WP_003721271.1|545883_546249_+|heme-oxygenase-IsdG
MIIVTNTIKVEKGAAEHVIRQFTGANGDGHPTKDIAEVEGFLGFELWHSKPEDKDYEEVVVTSKWESEEAQRNWVKSDSFKKAHGRTKDTREQREDRKGIVGNAIARFEVVHVQNPVIVEK
>NZ_CP014250.1|WP_003731249.1|546522_548286_+|RNA-directed-DNA-polymerase
MRKKVDVLSMDNEKAREFFMKPSSYFSQNLPKYFNLGYLLESAESKLGKKQLKKEMYFENKVYSNFPNVNFLIQTNKTISTYRPITLLHPYIYVDYVNFLTEIKIWEELKERFQNLQEEVKEKIICSSLPFDIETSKEDDSKKEMALNFWKSIEQETIKYSLGYNYLLKLDISNFYGSIYTHTLCWAFHGENYSKEAKNSKNLQNLTGDKCDRKFQWMNYGETVGIPQGNVISDLMSELLLAYIDSELVKKIDDEIDYKIIRYRDDYRIFTKRLEDSTLVKRELVVLLQRFKLNLGESKTSQTTDIISGSLKEDKMYWIEHDPVTKLTSDKFYRSPKILMKKSLEEHKNKKYKTRVFNEFFKKHFHNRTYQATLQKHLLIIKVFSDLYPNSGQLIAALHEFEGRLLDLNYKDFRNIGTEVEVLIAILVDIIKKNPKITEIGVKLLSTLLKKINFEEFEMKYLESNNSNEVQSDFEVKLAYINSVNHKLSNSNYNDYLEIWMQRLVVKNLKESTTLSDLYIEQSKNELVKFCNSIIRGKEMIQIFNEDWLKDEHKIELSKFINLNEIDKLTDIISDDEIYLAEYNQMT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP014250_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014250_2

537616-537873

Orphan

Consensus_repeat	Method
GATACCAGTTCCGTTACTAATATG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP014250_2

>merge|NZ_CP014250|2|537616-537873|CRISPRCasFinder
GATACGAGTGCTATAACTAATATATATGGCATGTTTCAATTTTGCTCTGGTCTTGAAGAGTTAGATTTAAGTCATTTTGATACCAGTTCCGTTACTAATATGTATTCCATGTTTTCGGGTTGTGGATCACTGGAGATTTTGGATGTAAGCAATTGGGATACGAGTTCCGTTACTAATATGAATAGAATGTTTCAAAATTGTACTAGTCTTGAAGAGCTAGATTTAAGTACCTTTGATACCAGTTCAATGACTGACATG

>NZ_CP014250|2|1|537616-537873|CRISPRCasFinder
GATACGAGTGCTATAACTAATATA	TATGGCATGTTTCAATTTTGCTCTGGTCTTGAAGAGTTAGATTTAAGTCATTTT
GATACCAGTTCCGTTACTAATATG	TATTCCATGTTTTCGGGTTGTGGATCACTGGAGATTTTGGATGTAAGCAATTGG
GATACGAGTTCCGTTACTAATATG	AATAGAATGTTTCAAAATTGTACTAGTCTTGAAGAGCTAGATTTAAGTACCTTT
GATACCAGTTCAATGACTGACATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014250.1\|WP_003721252.1\|538766_539240_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014250.1\|WP_023550313.1\|532521_534603_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP014250.1\|WP_003727318.1\|539772_540078_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273478
NZ_CP014250.1\|WP_003721271.1\|545883_546249_+\|heme-oxygenase-IsdG	unknown	unknown	gnl\|CDD\|183970
NZ_CP014250.1\|WP_009929138.1\|522172_523321_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP014250.1\|WP_003731249.1\|546522_548286_+\|RNA-directed-DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|238824
NZ_CP014250.1\|WP_023550315.1\|534738_536808_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP014250.1\|WP_003721253.1\|539259_539745_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014250.1\|WP_003725199.1\|540153_540420_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014250.1\|WP_003725208.1\|544053_545157_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|237717
NZ_CP014250.1\|WP_003728093.1\|527442_528543_+\|DUF917-domain-containing-protein	unknown	unknown	gnl\|CDD\|226065
NZ_CP014250.1\|WP_003728092.1\|528535_530086_+\|hydantoinase/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|223223
NZ_CP014250.1\|WP_003740428.1\|524428_526024_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306
NZ_CP014250.1\|WP_003733207.1\|541532_542093_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379534
NZ_CP014250.1\|WP_003725189.1\|526158_527442_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|271377
NZ_CP014250.1\|WP_003728986.1\|542202_543903_+\|oleate-hydratase	unknown	unknown	gnl\|CDD\|227060
NZ_CP014250.1\|WP_003721242.1\|523325_524273_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP014250.1\|WP_023550311.1\|530719_532258_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|368260
NZ_CP014250.1\|WP_003725186.1\|520016_522176_-\|transglutaminase	unknown	unknown	gnl\|CDD\|376628
NZ_CP014250.1\|WP_003725209.1\|545246_545726_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226231

Protein	Function_ID	Function_description	E-value
NZ_CP014250.1\|WP_023550313.1\|532521_534603_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	3.76219e-29
NZ_CP014250.1\|WP_003721271.1\|545883_546249_+\|heme-oxygenase-IsdG	gnl\|CDD\|183970	PRK13316, PRK13316, heme oxygenase IsdG.	3.55164e-70
NZ_CP014250.1\|WP_009929138.1\|522172_523321_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.37557e-52
NZ_CP014250.1\|WP_003731249.1\|546522_548286_+\|RNA-directed-DNA-polymerase	gnl\|CDD\|238824	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	1.43128e-28
NZ_CP014250.1\|WP_023550315.1\|534738_536808_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	8.34812e-31
NZ_CP014250.1\|WP_003727318.1\|539772_540078_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	4.34504e-05
NZ_CP014250.1\|WP_003725208.1\|544053_545157_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|237717	PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional.	0
NZ_CP014250.1\|WP_003728093.1\|527442_528543_+\|DUF917-domain-containing-protein	gnl\|CDD\|226065	COG3535, COG3535, Uncharacterized conserved protein [Function unknown].	0
NZ_CP014250.1\|WP_003728092.1\|528535_530086_+\|hydantoinase/oxoprolinase-family-protein	gnl\|CDD\|223223	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	1.15698e-106
NZ_CP014250.1\|WP_003740428.1\|524428_526024_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.42853e-59
NZ_CP014250.1\|WP_003733207.1\|541532_542093_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|379534	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region. This domain is a tetracycline repressor, domain 2, or C-terminus.	2.23521e-25
NZ_CP014250.1\|WP_003725189.1\|526158_527442_+\|cytosine-permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	2.40318e-96
NZ_CP014250.1\|WP_003728986.1\|542202_543903_+\|oleate-hydratase	gnl\|CDD\|227060	COG4716, COG4716, Myosin-crossreactive antigen [Function unknown].	0
NZ_CP014250.1\|WP_003721242.1\|523325_524273_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	7.47241e-102
NZ_CP014250.1\|WP_023550311.1\|530719_532258_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|368260	pfam05043, Mga, Mga helix-turn-helix domain. M regulator protein trans-acting positive regulator (Mga) is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This domain is found in the centre of the Mga proteins. This family also contains a number of bacterial RofA transcriptional regulators that seem to be largely restricted to streptococci. These proteins have been shown to regulate the expression of important bacterial adhesins. This is presumably a DNA-binding domain.	1.01429e-19
NZ_CP014250.1\|WP_003725186.1\|520016_522176_-\|transglutaminase	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	4.40206e-28
NZ_CP014250.1\|WP_003725209.1\|545246_545726_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	1.03205e-42

>NZ_CP014250.1|WP_023550315.1|534738_536808_+|BspA-family-leucine-rich-repeat-surface-protein
MKKLSIRVILIVTIIFIACGSANVSIAQERDIINKLPEVELGSLYTSNLITEEVAQDKPAEVENLEQAPTTDDLVQNPDVLEQPIADSDDSDLTVVNSGDFWTIYRNTVNGEYSLHMFGNVPSSKPTAWNSYLNRIKHIEIEEATLTGNFSSYFRNNVFTVLESVRIERSNLSRVTSFALAFYGSGIEKVIIRDNNYPTAPSLLTTEGMFKNCSNLMEVDLSGLDTSAVTTMWDMFNSCRALEELDVSNFDTSSVTNMSYMFYDNRNLEVLDVSNLDTGSVTNMYAMFEDCTSLEELDVSNFDTSSVTDMYRVFNGCEKLKKLDVSNFDTSSATAMVQMFRNCSALEKLDVSNFNTSLVTDMRAMFAGCTSLEALDVSNFDTSSVTNMAAMFSDNEKLEKLDLSTFDTSSVTNMGTMFKNCTALKSLFLDNFTHAASSTDMFTGTTSLSYLFVSHNVSNFNGLENTNWYDEKNWLQFSNLSQLQTYHRKQSEPTGYRKGEFLSLTMDAMGGQFEDAEEQKVQSKISGEYWEEVIPVKEGHYFDGWYLDQNFTNKFDFSLPATVSATLYAKWVENYTVVIPASISLNEATELKVEGINRGSKTLSVGLNYEETTISESNKLTLSNTADTTVQCLAPLSWDGSETNPKNAILTLAPGSEITEGDAVMEIESPENIQAGTYTGNLVFSINYE
>NZ_CP014250.1|WP_023550313.1|532521_534603_+|BspA-family-leucine-rich-repeat-surface-protein
MKKFSMRVVLIISVLFIALGNANVSIAQERDTTNKLPEEELGSLDTSNLIAEEVAQEKPAEVENLEEIPTTDELMQNPEVREQPVADSDDPDLTAVSSGDYWTIYYNSANDEYSLRMFGNVPSSKPSAWNSYLKYIKHIEIEEATLTGDFSSYFRSNVFTVLESVRIERSNLSGVTSFARAFEGDSESESPLEKVIIRDNYYQETPSLTNISRMFTLCRKLSELDVSGLNTSSVTKMDTIFSNANSLKELDVSHFDTSSVTDMSSMFAACNSLEELDVSNFDTSSVTNMKYMLSGLHLKKLDVSNFDTSSVTNMYGMFAYCYNLEELDVSNFDTSSVNNMLHMFYVCNNLEELDLSNFDTSSVTNMFAMFAYCTSLKEIDVSNFDTSSVTTMSAMFFECSSLEALDLSNFDTSSVTTMASMFENSTALKSLYLDNFTDAASMTDMFKGTTSLTYLFVSHNLSTFNRLENTSWYDEKNWVQFSNLSQLQTYHRKQSEPTGYRKGAFLSLTMDAMGGEFEDAEEQKVQNKVSGEYWEEIVPVKEDYYFDGWYLDQNFTNKFDFSLPAAVSTTIYAKWVENYTVIIPASISLNEATELKVEGINRGSKALSVGLNRLATSVSESNELTLANTADTTVQCSAPLSWDGSENNPEKAILTLAPGSEITEGDAVMAIEAPENIQAGKYTGNLVFSINYE
>NZ_CP014250.1|WP_023550311.1|530719_532258_+|helix-turn-helix-domain-containing-protein
MREYLDSKSQKKVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKAFSIVHSAPNLSYTLKISDNCSIQLIINAYIRESPKFQILETLLLASFPNLQALAKKVHVSYSGIKKEIKELNEELRERNLSISTGNQVEITGDEFSLRIFYAFLFLVAYSGDRWPFSFVQYDEITDILESCPKEIYRANSIDKAMMIHYYVAMHLLRDRMNCQIDTTRQFKVALYKACTEESKKSESAFIKKVAKQLPNRNYKEMTYTTQIILSTIVAFGSYSSIEKMPSFFYMDEQLEEMGFMKLVDFASEQVNDNLSIPFSEKEMELLRYSFASINYRYFLLDNLINKFNNIVPGYTNLDRNIRKIHKVNHLEPLISQLVNLKEMDPLKPFEERLASDYLIILDKRIDFSIHTLPIKVTILSTISNETAVFDFMRYFSSYYNLEIINQVDPVVDLYISDFSVSPEVLTSLRINQPIIYVNTRWLESDYVKINDNLAKIARKKFIANKKN
>NZ_CP014250.1|WP_003728092.1|528535_530086_+|hydantoinase/oxoprolinase-family-protein
MYKIGIDVGGTNTDAVILDENQQLIHSVKMPTSEDIETGITESLHRVLSETGIDRSKVTHAMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPEDMVGFLSGKYKLTGGGYEYDGQVLSEINEAEIRETLASWKGEVESVAVVGVFSSLKNDQELAVQKIIEEELGADIPVSISSSVGSVGLIERENATILNAALFKVIAATSDGFEKALEQEGIAHAEIYLCQNDGTLMSLNYARQFPILTIACGPTNSIRGASYLAGLKDAMVLDVGGTTSDIGVLTDGFPRESSLAVDVGGVRTNFRMPDIISIGLGGGSIVREKDGDITIGPDSVGYRISEEALVFGGKTMTTTDIAVRLGRAEIGNPELVAHIPTDFAEKAYKKIAEMTEDAIDKMKTSSGSVSLVLVGGGSVIIPDEISGVAQIFRDKNGPVANAIGASISQISGQYEQIYIYSQIEREEALQDAEQKAREQATLAGAVTDSIEVVEVEEIPLAYHPGNATRLRVKVVGNLV
>NZ_CP014250.1|WP_003728093.1|527442_528543_+|DUF917-domain-containing-protein
MRYLDEQAIENIAIGAAFLGTGGGGDPYIGKMMALTAIKKHGPIKLLSPEEIADDDYFIPAAMMGAPSVLIEKFPKGDEFVRVFEKLGRYVGKEVKGTFPMEAGGVNSMIPIVVAAQLGLPMVDCDGMGRAFPELQMVTFHLDGISATPMAITDEKGNIGIMETIDNKWTERLARVTTVEMGASSLVSLYPCNGAQIKQSSIKNIVTLSEEIGKVIRETSMDEAEKLQKLLDVTHGYHLFEGKITDVVRETRAGFNFGRVKIDGLNKDTGSEVIVHFQNENLVAEKNGEPIAITPDLICMVDLETLMPVTTEALKYGKRVRVMALPADDAWRTDKGIETVGPRYFGYDVDFEPLEELVKKEERRHV
>NZ_CP014250.1|WP_003725189.1|526158_527442_+|cytosine-permease
MTEKKSVEQTQSWQSLAFVWTGAMICVPSLLVGGTLISGMPLWEAILIALLGYGVIVLFMIYQGMQSSDLGIPAVSVASQVFGEQGSKKIISILLAIACLGWFGIQANVCGAAFSQFLGIYGINLPVPVSSLIWGVIMLLSAIYGIRILSILNYIAVPVLLFVCIYGLVVSLNDGGLAIVENYKPAGSMSFMTGLAITIGSFALGAVIAGDYSQYTKSRKDVVKAAIVGILPSGVLMITVGAVLALTAGTADISVVFTNLGLPVLGIIGLILAAWTTNAVNAFSGGIAIINVFNISEKYHKVAVAVAGGLGTILAVIGILNHFVPIMSVLSAMVPPVAGVMIASYWIVQKGDKSKWAPVPGVNWLGVSSWLVGAVIAGIPVILTFFPELPQLPNQPLIGIILSLAVYLIGAKVLSGKTNNVENLEGK
>NZ_CP014250.1|WP_003740428.1|524428_526024_+|PucR-family-transcriptional-regulator
MSVKLADLMKLPSLKEAKVVSGKSGLSKLVSSISVLEYTEVALLEDDLFDNDEFYGSEIVVSAFVNIRDDVEAQCRTIERLHKVGEVALILYYVGIFVPKMDQKLIDFANELDFTIIVMPENEMSLRYSEVIYEVVEAIVKQEMTDTNFVTESLEQISSVRPPQRNIDTTLKILSDRTHTSLVLTDNSFQVINSITWPRTRHWDFERIIEASKQIGEHELVQLTLDERDFYTARKPIFQDGMQAMHLFMMKEKGVLTADVVMQITEVVQVFMNLWGRNYVEISTAELMKAILNDESVKMRRLGKILNVDVSSIKWMWLVKTEEIRDNEQVLAELKSFVASHFQVSLIDLFEDNIVVLLDNSVAQRDRTHTANEFAMMMKEHGIDLKITVCQGMEQTSDVQSAYSLVNEYKNAANAIYANKSIYSLQEIDFAAKCVEIVDRGELAIAEQMRPLKPLEDNDELIETLSVFLLEGESNYNQAAELLFLHKNTIKYRIQRINELLQYPATKIPESYNLYLAVAIRRILGGNNNNK
>NZ_CP014250.1|WP_003721242.1|523325_524273_-|MoxR-family-ATPase
MSIEPSIKIEEIINEVEKVIVGKRHVVKLSLTALLAGGHVLLEDVPGVGKTMMVRTLSKTIGVSFKRIQFTPDLLPADVTGVSIFNPETRDFEFRPGPVMGNIVLADEINRTAPRTQAALLEGMAENSVTVDGITRKLANPFFVMATQNPIEYEGTYALPEAQLDRFLLKINIGYPTVEEEMQLLTLKQYQDPLDQTQQVVTLSELLDLKNKAKQVFIDDVLKNYIIRLVDATRKHPSVALGISPRGSLAFMQAAQAFALIEGRDYVIPDDIQYLAPYIFTHRLILKSEAYYNEETAESIIASILKNTSVPVEKR
>NZ_CP014250.1|WP_009929138.1|522172_523321_-|DUF58-domain-containing-protein
MLKKRLLLAFRWIIMLIIYAGLWTYTLFQGDTASWFLTYFFSFILLLLFLSSIYPLKAWKVNRRFVKNTYHDGDLIDMQVSFTRKSRYPVGYLLFQQKIPASFGNVSARQQVVYPLFKKHFTVTLAGFVGVRGIHSFPPVDVETSDAFGLLERSRQLSSEKSLTIYPTYFPDVLEKISEASPENERNAAYWTLKKNSNLHSLREFSSGDRISLIDWKSSAKSDQLMTREFENSATSRLSVIFYGASHPNFELSLRAAYSFIRKISEDNGEIRVTLLGDQTSKFAPAKGTSRLQDISTAFAEIAPVDSLTLQESLDSNLHSGEKILLFTPCIDTMLMQKVTRLTDNKQLQIITFQSEHSKAMDAPAIFLEPASLLSRWEREAK
>NZ_CP014250.1|WP_003725186.1|520016_522176_-|transglutaminase
MKRYLTLVMLFILSVLLISEWIYPFAELTELSTANWIILFITLSLGSFFLRLKYYWTIPLHIVMIIFVSGIYYAKGGILAGNWFVSFFQITFNGFRDMVQFRSSDISMDFILIVFLIALWLLSYITTYSILRKQRVMSVLVLTVAYLAVINTFTDYNSNWAIVRTVLEGFLLLHLALASRIAAPNRISADSLKRNGLFYHIFVILLLAVFVFSSLMLPKKAPIFPDPVPTIKNALGINTTRTVGYSEDDTTLGGALKKDNATVFTARAEKGHYWRVESKTVYTGTGWANANSADVISFSSGDNFPIQLTEQTTGATNTAEISFASSNDYMPYPYGTQTVNGAVDSFSANLTIERVGPVDTIKNYTVQLKTPVYNIEKMQNADFSTLSNAFVSQYTQTPKDLPDRVTKLANKVTKDADSIYDKTKAIERYLSASGTFTYSTEDAKETPRGADYVDQFLFETQIGYCDNFSTSMVVMLRSLGIPARWAKGYTPGEGEKKENDAKTTYTITNNNAHSWPEVFFPGTGWVPFEPTATFSNPENFQEPTTETANKPETPNDSTSTPETPNTADKTPEQDNGSSSTGETPKKEEPKTETAASNFEIPSWVWWIPAGLVVTLLALAIIFRRRIRRYLLLRSLRNSPEFGKTYHRLMKLLASYGYVRESSETLRHFSTRVDAELTTTEFSRLTKMYEAQIYSNNLTEKVITAEETQLVQQVIARLTK
>NZ_CP014250.1|WP_003721252.1|538766_539240_+|hypothetical-protein
MKKKRVVIISLLLLLVSVIGISSYFLFKDKINLLDVDHSAVDWNGKKQKDTSGEENTIAIPGFEKVTLYANETKQAVNFHNPEINDCYFKISLIHPDGSVLWISDLIEPGKGMYSIELEKTLAVGEYENAVLKYECFSLNDQSPLNGSEINLKLVVV
>NZ_CP014250.1|WP_003721253.1|539259_539745_+|hypothetical-protein
MNKLVLSTLSVAAMGMVFFSGGTAYAADKEGNTVVEYSVEGDYTLVVPEKVNLSNDNATEMSVKTINRNLEPGKEVEVTLSSGLSADGEIELQRVGAISDVITSSFKSNNSVVPMANPVIGSFSGYAMEETEVSKIQIGNPQGDKKAGAYQTTLTFTAAFK
>NZ_CP014250.1|WP_003727318.1|539772_540078_+|LPXTG-cell-wall-anchor-domain-containing-protein
MKRKLVLAMVLISFCGMFFLSPDRVQASQTVVEVLISEDDLDVSEENIQEIPKKELAASSDKDNKQPILPKAGDTVTNYTLLGLVLVLIWLIMQRKRKKKE
>NZ_CP014250.1|WP_003725199.1|540153_540420_+|hypothetical-protein
MARIEYGEEIQKSLLVLYSRGSTIDSICKEYGIPRYEFHKWMKLHDADKLETKEVKTFLQIRELKQQKNKLEEEILFLNEAINLLESP
>NZ_CP014250.1|WP_003733207.1|541532_542093_+|TetR-family-transcriptional-regulator
MAESLITKKAIAGGLMELCQHKRFEKISIADITNICGLNRQTFYYHFTDKYDLLTWTYENDFFHCLADGITLGNWDKHVLKMLESIKENADFYKNTVSADASILSFCFSKLTNSLFMDLFEKIDTNGAVNEADRVFYAEFFSYGCSGVLIKWITRGFKEAPETIANQLFRLAKDTEFLANSMYREN
>NZ_CP014250.1|WP_003728986.1|542202_543903_+|oleate-hydratase
MKNKKRTLVALTGAAIGTGIAAKKISEQKAAEKERAVDEAIKARYYGDKQVYFVGGGIASLAGAVYLIRDANFDGKNIHIIEGMHILGGSNDGAGSVEHGFVCRGGRMLNEETYENFWDLFSSIPSLDMPNFSVTEEILNFDHLHPTHAQARLVDKDRNILDAHSMGFNNNDRMLMTKLLATPEEKLDNLTIRDWFDEHFFETNFWYMWQTTFAFQKWSSLFEFRRYMNRMMLEFSRIDTLEGVTRTPLNQYESLILPLKTFLDKHHVDFTINQTVEDIDFKDAPGITATALHLSDGSTIELGPDDDVIMTNACMTDSATLGDMNTPAPKPEEKPISGELWYKVAQKKPNLGNPEPFFGHEEETNWQSFTVTCHGDKLLKRIERFTGNIPGSGALMTFKDSNWLMSTVVAAQPHFKAQDANTTIFWGYGLYPDRVGDFVKKPMKECTGEEILYELMCHLNWQDDFEEIKADIINVIPCYMPYIDAQFEPRAMSDRPAVVPEGSTNFAMISQFVEIPKDMVFTEEYSVRAARIAVYTLLDIDKKICPVTPHNRDPKVLAKATQTMFR
>NZ_CP014250.1|WP_003725208.1|544053_545157_+|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MEKSSIYGLTWTKLTEWLEAHGQKKFRATQVWDWLYRKRVKTFEEMSNVPKETIELLTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNLIETVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMKQKQAAAEE
>NZ_CP014250.1|WP_003725209.1|545246_545726_+|AraC-family-transcriptional-regulator
MEVEIVERNAFTAVGKKRTFSVENDAQKEKISQFWQEANTNGDAERINELAEFATIDGILGVCKMNGDKMDYYIAIESELTPPADMEKLIIPASKWAIFKSVGPLPSAIQKVWEYIYGEWFQTSNYAHGNAPELEVYTEGDTTAADYYSEVWIPVVEKE
>NZ_CP014250.1|WP_003721271.1|545883_546249_+|heme-oxygenase-IsdG
MIIVTNTIKVEKGAAEHVIRQFTGANGDGHPTKDIAEVEGFLGFELWHSKPEDKDYEEVVVTSKWESEEAQRNWVKSDSFKKAHGRTKDTREQREDRKGIVGNAIARFEVVHVQNPVIVEK
>NZ_CP014250.1|WP_003731249.1|546522_548286_+|RNA-directed-DNA-polymerase
MRKKVDVLSMDNEKAREFFMKPSSYFSQNLPKYFNLGYLLESAESKLGKKQLKKEMYFENKVYSNFPNVNFLIQTNKTISTYRPITLLHPYIYVDYVNFLTEIKIWEELKERFQNLQEEVKEKIICSSLPFDIETSKEDDSKKEMALNFWKSIEQETIKYSLGYNYLLKLDISNFYGSIYTHTLCWAFHGENYSKEAKNSKNLQNLTGDKCDRKFQWMNYGETVGIPQGNVISDLMSELLLAYIDSELVKKIDDEIDYKIIRYRDDYRIFTKRLEDSTLVKRELVVLLQRFKLNLGESKTSQTTDIISGSLKEDKMYWIEHDPVTKLTSDKFYRSPKILMKKSLEEHKNKKYKTRVFNEFFKKHFHNRTYQATLQKHLLIIKVFSDLYPNSGQLIAALHEFEGRLLDLNYKDFRNIGTEVEVLIAILVDIIKKNPKITEIGVKLLSTLLKKINFEEFEMKYLESNNSNEVQSDFEVKLAYINSVNHKLSNSNYNDYLEIWMQRLVVKNLKESTTLSDLYIEQSKNELVKFCNSIIRGKEMIQIFNEDWLKDEHKIELSKFINLNEIDKLTDIISDDEIYLAEYNQMT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

72076 : 111653

Listeria_phage(92.0%)

tail,terminase,holin,integrase

attL 64442:64458|attR 100923:100939

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
64442:64458	attL	NA	NA	NA	NA
WP_009928363.1\|72076_73033_+	2-hydroxyacid dehydrogenase	M1H502	Paramecium_bursaria_Chlorella_virus	1.2e-29	29.6
WP_031670104.1\|73299_74502_-\|integrase	site-specific integrase	A0A0B5CTW8	Listeria_phage	1.5e-218	96.0
WP_031670105.1\|74570_75005_-	hypothetical protein	NA	NA	NA	NA
WP_031670100.1\|75059_75227_-	hypothetical protein	NA	NA	NA	NA
WP_031670101.1\|75382_75859_-	helix-turn-helix transcriptional regulator	A8ASM2	Listeria_phage	2.2e-40	60.6
WP_009924231.1\|76027_76231_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003733687.1\|76263_76458_+	hypothetical protein	A0A059T6E5	Listeria_phage	1.4e-25	95.3
WP_031670099.1\|76416_76776_-	DUF2513 domain-containing protein	A0A2H4J4K9	uncultured_Caudovirales_phage	6.0e-06	25.4
WP_031670098.1\|76839_77613_+	Rha family transcriptional regulator	R9QMT9	Lactococcus_phage	1.5e-38	40.3
WP_031670097.1\|77734_78259_+	hypothetical protein	A8ATY1	Listeria_phage	1.0e-86	97.1
WP_060868971.1\|78265_78451_+	helix-turn-helix domain-containing protein	A0A059T674	Listeria_phage	5.4e-27	98.4
WP_031670096.1\|78466_78655_+	hypothetical protein	A0A059T7X9	Listeria_phage	3.2e-27	96.8
WP_060868972.1\|78884_79079_+	hypothetical protein	A8ASN1	Listeria_phage	1.6e-29	98.4
WP_060868973.1\|79075_79552_+	siphovirus Gp157 family protein	A0A059T5F1	Listeria_phage	1.3e-35	50.3
WP_060868974.1\|79562_80207_+	ERF family protein	S5MBS0	Brevibacillus_phage	1.4e-40	47.6
WP_060868975.1\|80218_81133_+	DnaD domain-containing protein	A0A0B5D175	Listeria_phage	5.2e-139	89.5
WP_060868976.1\|81129_81843_+	SAM-dependent DNA methyltransferase	A8ATD5	Listeria_phage	1.7e-129	97.5
WP_060868977.1\|81853_82798_+\|integrase	site-specific integrase	A8ATD6	Listeria_phage	1.7e-177	98.4
WP_031643750.1\|82810_83491_+	hypothetical protein	A8ATD7	Listeria_phage	4.8e-121	96.9
WP_031643752.1\|83487_84045_+	DUF1642 domain-containing protein	A8ATD8	Listeria_phage	6.4e-55	58.2
WP_031643753.1\|84206_84413_+	hypothetical protein	NA	NA	NA	NA
WP_031643755.1\|84399_84816_+	hypothetical protein	A8ASP1	Listeria_phage	1.4e-14	37.2
WP_031643756.1\|84812_84995_+	hypothetical protein	NA	NA	NA	NA
WP_060868978.1\|84991_85393_+	hypothetical protein	A0A059T6C9	Listeria_phage	7.6e-42	65.4
WP_060868979.1\|85389_85638_+	DUF3850 domain-containing protein	A0A059T7N3	Listeria_phage	3.5e-29	85.3
WP_060868980.1\|85634_86114_+	single-stranded DNA-binding protein	A0A059T5E0	Listeria_phage	2.8e-75	90.6
WP_003722551.1\|86132_86324_+	hypothetical protein	A8ASP6	Listeria_phage	1.8e-25	98.4
WP_060868981.1\|86268_86673_+	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	2.3e-54	81.3
WP_060577781.1\|86676_87063_+	DUF2481 domain-containing protein	A0A0B5CU14	Listeria_phage	3.0e-43	67.7
WP_060868982.1\|87228_87666_+	hypothetical protein	A8ASQ1	Listeria_phage	1.0e-68	92.3
WP_003723794.1\|87692_88295_+	hypothetical protein	NA	NA	NA	NA
WP_031670269.1\|88482_89115_+	hypothetical protein	A8AU05	Listeria_phage	4.0e-114	99.0
WP_012951944.1\|89195_89423_+	hypothetical protein	A8AU06	Listeria_phage	1.5e-34	100.0
WP_031670271.1\|89462_90203_+	hypothetical protein	A0A0B5CTX0	Listeria_phage	9.2e-134	99.2
WP_031670272.1\|90195_91515_+\|terminase	PBSX family phage terminase large subunit	A8ATU6	Listeria_phage	4.1e-262	98.9
WP_031670273.1\|91529_93086_+	hypothetical protein	A8ATU7	Listeria_phage	1.5e-298	98.3
WP_031670275.1\|93090_94134_+	hypothetical protein	A0A0B5D111	Listeria_phage	9.7e-198	98.0
WP_031670277.1\|94229_94784_+	hypothetical protein	A8ATU9	Listeria_phage	2.2e-84	89.1
WP_003723787.1\|94806_95679_+	hypothetical protein	A0A0B5CTX8	Listeria_phage	2.3e-152	93.8
WP_003723785.1\|95848_96202_+	hypothetical protein	A8ATV2	Listeria_phage	8.4e-61	99.1
WP_003731720.1\|96201_96567_+	hypothetical protein	A8ATV3	Listeria_phage	1.6e-62	95.0
WP_003723784.1\|96556_96874_+	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	1.7e-49	95.2
WP_003723783.1\|96870_97275_+	hypothetical protein	A8ATV5	Listeria_phage	2.1e-63	98.4
WP_003723782.1\|97246_97678_+	Ig domain-containing protein	A0A0B5CYK8	Listeria_phage	8.1e-58	82.9
WP_031670280.1\|97700_97940_+	hypothetical protein	A8ASK3	Listeria_phage	1.8e-30	89.9
WP_003731721.1\|97988_98420_+	hypothetical protein	A8ATV7	Listeria_phage	5.4e-70	95.1
WP_075356981.1\|98416_98728_+	hypothetical protein	A0A0B5D116	Listeria_phage	1.9e-40	93.4
WP_060868983.1\|98732_103529_+\|tail	phage tail tape measure protein	A0A0B5CTS6	Listeria_phage	0.0e+00	87.4
100923:100939	attR	NA	NA	NA	NA
WP_003731724.1\|103525_105094_+	hypothetical protein	A8ATW0	Listeria_phage	4.7e-305	99.6
WP_060868984.1\|105106_107269_+	hypothetical protein	A8ATW1	Listeria_phage	0.0e+00	97.1
WP_031670289.1\|107320_107626_+	hypothetical protein	A0A059T5E6	Listeria_phage	1.1e-40	93.1
WP_031670291.1\|107625_107889_+\|holin	phage holin	A0A059T684	Listeria_phage	1.5e-35	84.9
WP_031670293.1\|107885_108119_+	hypothetical protein	R4IBI3	Listeria_phage	2.7e-31	85.7
WP_075356982.1\|108120_108894_+	N-acetylmuramoyl-L-alanine amidase family protein	R4ICC5	Listeria_phage	3.9e-87	89.5
WP_100066223.1\|109346_109943_+	hypothetical protein	NA	NA	NA	NA
WP_031670297.1\|110459_110951_+	hypothetical protein	NA	NA	NA	NA
WP_031670299.1\|111216_111450_+	hypothetical protein	R4IDW6	Listeria_phage	2.8e-36	97.4
WP_031670301.1\|111446_111653_+	hypothetical protein	A0A059T5E7	Listeria_phage	1.2e-30	98.5

DBSCAN-SWA_2

149541 : 156068

Listeria_phage(33.33%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728215.1\|149541_149994_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
WP_003721740.1\|149999_150335_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_009927883.1\|150551_150980_+	hypothetical protein	NA	NA	NA	NA
WP_003731177.1\|150991_151408_+	hypothetical protein	A8ASQ1	Listeria_phage	6.5e-20	37.9
WP_003728212.1\|151687_152077_+	DUF5072 domain-containing protein	NA	NA	NA	NA
WP_003721744.1\|152089_152602_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003721745.1\|152649_152952_+	hypothetical protein	NA	NA	NA	NA
WP_003740367.1\|152993_153398_+	hypothetical protein	NA	NA	NA	NA
WP_009928420.1\|153384_155253_+	membrane protein	A0A097PAU2	Streptococcus_pyogenes_phage	4.5e-20	45.8
WP_003734720.1\|155249_156068_+\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	7.2e-39	35.0

DBSCAN-SWA_3

1152369 : 1159792

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003730941.1\|1152369_1152753_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7
WP_003727002.1\|1152774_1153758_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	2.0e-11	33.8
WP_023550414.1\|1153772_1154786_+	glycosyltransferase	A0A1V0SAH6	Catovirus	1.8e-10	31.2
WP_003721509.1\|1154994_1156485_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_023550416.1\|1156496_1157321_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	1.3e-67	52.2
WP_009929872.1\|1157333_1157642_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_009929871.1\|1157702_1158107_+	PTS lactose transporter subunit IIBC	NA	NA	NA	NA
WP_023550418.1\|1158235_1159792_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	6.0e-18	29.2

DBSCAN-SWA_4

1255757 : 1357504

110

Listeria_phage(76.56%)

terminase,capsid,tail,tRNA,protease,holin,portal,integrase

attL 1324814:1324834|attR 1326474:1326494

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721619.1\|1255757_1256810_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.3e-29	34.9
WP_009927922.1\|1256809_1259218_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_003721621.1\|1259378_1260080_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.0e-33	35.8
WP_023550449.1\|1260093_1263504_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_003724750.1\|1263601_1264054_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003724751.1\|1264069_1267270_+	MMPL family transporter	NA	NA	NA	NA
WP_060869009.1\|1267373_1268048_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	8.3e-49	47.3
WP_012681263.1\|1268085_1269012_-	ribonuclease HIII	NA	NA	NA	NA
WP_003740576.1\|1269165_1269429_+	cell division protein ZapA	NA	NA	NA	NA
WP_003726937.1\|1269428_1269971_+	CvpA family protein	NA	NA	NA	NA
WP_023550452.1\|1270062_1271775_+	DNA polymerase/3'-5' exonuclease PolX	A0A2H4UV14	Bodo_saltans_virus	1.9e-17	24.5
WP_003734676.1\|1271797_1274155_+	endonuclease MutS2	Q94M10	Lactobacillus_phage	1.0e-21	50.4
WP_003723853.1\|1274235_1274547_+	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	5.4e-19	39.6
WP_003726544.1\|1274622_1276434_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_060869010.1\|1276614_1277829_+	aspartate kinase	NA	NA	NA	NA
WP_012681265.1\|1277884_1278379_-	YslB family protein	NA	NA	NA	NA
WP_003723856.1\|1278526_1279327_+	glutamate racemase	NA	NA	NA	NA
WP_003730987.1\|1279339_1280086_+	ribonuclease PH	NA	NA	NA	NA
WP_009928777.1\|1280088_1280700_+	XTP/dITP diphosphatase	Q66YC8	Euphorbia_ringspot_virus	8.7e-05	28.0
WP_003726034.1\|1280736_1281261_+	metallophosphoesterase	NA	NA	NA	NA
WP_014930113.1\|1281547_1282702_-\|integrase	site-specific integrase	A8ATC7	Listeria_phage	2.0e-207	94.8
WP_060869011.1\|1282835_1283450_-	hypothetical protein	A0A059T7Z1	Listeria_phage	7.2e-100	94.1
WP_060869012.1\|1283499_1283952_-	ImmA/IrrE family metallo-endopeptidase	R4IBK9	Listeria_phage	2.5e-78	90.0
WP_014930118.1\|1283972_1284296_-	helix-turn-helix transcriptional regulator	Q8W5Y0	Listeria_phage	8.8e-33	66.4
WP_009931099.1\|1285100_1285424_+	hypothetical protein	NA	NA	NA	NA
WP_060869013.1\|1285438_1285642_+	helix-turn-helix transcriptional regulator	A0A059T5F8	Listeria_phage	1.6e-27	98.5
WP_015987310.1\|1285643_1285886_+	hypothetical protein	A8ATD2	Listeria_phage	1.4e-43	100.0
WP_009929539.1\|1285888_1286074_+	hypothetical protein	A0A059T7Z3	Listeria_phage	1.7e-28	96.7
WP_060868976.1\|1287295_1288009_+	SAM-dependent DNA methyltransferase	A8ATD5	Listeria_phage	1.7e-129	97.5
WP_060868977.1\|1288019_1288964_+\|integrase	site-specific integrase	A8ATD6	Listeria_phage	1.7e-177	98.4
WP_031643750.1\|1288976_1289657_+	hypothetical protein	A8ATD7	Listeria_phage	4.8e-121	96.9
WP_031643752.1\|1289653_1290211_+	DUF1642 domain-containing protein	A8ATD8	Listeria_phage	6.4e-55	58.2
WP_060869014.1\|1290369_1290744_+	hypothetical protein	A8ATD9	Listeria_phage	2.0e-57	89.6
WP_014601509.1\|1290740_1290950_+	hypothetical protein	A8ATE0	Listeria_phage	1.7e-32	100.0
WP_003731704.1\|1290950_1291280_+	hypothetical protein	A8ATE1	Listeria_phage	1.1e-57	100.0
WP_003731705.1\|1291276_1291549_+	hypothetical protein	A8ATE2	Listeria_phage	2.0e-46	100.0
WP_003731672.1\|1292003_1292237_+	hypothetical protein	NA	NA	NA	NA
WP_003731671.1\|1292233_1292464_+	hypothetical protein	NA	NA	NA	NA
WP_003731670.1\|1292453_1292720_+	hypothetical protein	NA	NA	NA	NA
WP_014929534.1\|1293223_1293607_+	hypothetical protein	A0A059T6A2	Listeria_phage	5.5e-66	99.2
WP_009928021.1\|1293608_1294088_+	siphovirus Gp157 family protein	A0A059T803	Listeria_phage	2.6e-57	77.2
WP_031658794.1\|1294106_1294799_+	AAA family ATPase	A8ATF0	Listeria_phage	4.1e-120	94.3
WP_031641708.1\|1294862_1296119_+	DEAD/DEAH box helicase	Q8W5V9	Listeria_phage	1.6e-234	96.4
WP_009928019.1\|1296143_1296629_+	DUF669 domain-containing protein	A0A059T5G4	Listeria_phage	2.9e-88	100.0
WP_011702028.1\|1296651_1298994_+	DNA primase	A0A059T6A4	Listeria_phage	1.3e-146	43.2
WP_026747297.1\|1299290_1299611_+	VRR-NUC domain-containing protein	A0A059T805	Listeria_phage	4.0e-54	100.0
WP_060869015.1\|1299607_1299877_+	hypothetical protein	W0GBM0	Listeria_phage	3.2e-20	90.6
WP_060869055.1\|1299987_1300518_+	DUF3310 domain-containing protein	A0A059T7T5	Listeria_phage	2.6e-74	77.1
WP_003731655.1\|1300517_1300745_+	hypothetical protein	NA	NA	NA	NA
WP_003747284.1\|1300757_1301183_+	DUF722 domain-containing protein	Q8W5V4	Listeria_phage	5.0e-68	92.2
WP_003731653.1\|1301540_1301723_+	hypothetical protein	A8ATF7	Listeria_phage	2.8e-28	96.7
WP_003731652.1\|1301766_1302081_+	HNH endonuclease	A8ATF8	Listeria_phage	3.2e-56	98.1
WP_031668694.1\|1302129_1302486_+	hypothetical protein	A0A059T7Y1	Listeria_phage	1.0e-45	96.0
WP_060869016.1\|1302482_1304126_+\|terminase	terminase large subunit	A8AT95	Listeria_phage	0.0e+00	97.8
WP_023548926.1\|1304137_1305268_+\|portal	phage portal protein	A8AT96	Listeria_phage	1.7e-203	93.1
WP_023548924.1\|1305264_1306062_+\|protease	Clp protease ClpP	A0A059T5F2	Listeria_phage	1.2e-136	95.1
WP_009917704.1\|1306088_1307240_+\|capsid	phage major capsid protein	A8AT98	Listeria_phage	7.2e-202	93.2
WP_003731645.1\|1307426_1307726_+	hypothetical protein	A8ATA0	Listeria_phage	5.3e-48	100.0
WP_003731644.1\|1307709_1308075_+	hypothetical protein	A8ATA1	Listeria_phage	1.3e-64	100.0
WP_003731643.1\|1308071_1308473_+	hypothetical protein	A8ATA2	Listeria_phage	2.1e-68	100.0
WP_012581456.1\|1308469_1308853_+	hypothetical protein	A8ATA3	Listeria_phage	3.8e-67	100.0
WP_023548920.1\|1308874_1309462_+\|tail	phage tail protein	A8ATA4	Listeria_phage	1.5e-107	99.5
WP_023548918.1\|1309533_1309866_+	hypothetical protein	A8ATA5	Listeria_phage	4.3e-51	97.3
WP_060869017.1\|1310080_1315000_+\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	0.0e+00	93.0
WP_060869018.1\|1314992_1316642_+\|tail	phage tail protein	A0A059T682	Listeria_phage	0.0e+00	99.3
WP_060869019.1\|1316657_1318952_+	hypothetical protein	A0A059T7Y6	Listeria_phage	0.0e+00	95.3
WP_060869020.1\|1318941_1320033_+	hypothetical protein	A0A059T7R4	Listeria_phage	6.4e-176	84.6
WP_060869021.1\|1320085_1320394_+	hypothetical protein	A0A059T5E6	Listeria_phage	5.1e-38	87.9
WP_060869022.1\|1320393_1320660_+\|holin	phage holin	A0A059T684	Listeria_phage	8.0e-40	96.6
WP_060869023.1\|1320659_1321367_+	M15 family metallopeptidase	A8ATW4	Listeria_phage	2.6e-125	94.5
WP_060869024.1\|1321523_1322426_+	ATP-binding protein	J7KDG8	Streptococcus_phage	2.0e-37	33.1
WP_031667948.1\|1322419_1322719_+	STAS-like domain-containing protein	NA	NA	NA	NA
WP_003723291.1\|1322793_1323243_-	anti-CRISPR protein AcrIIA1	Q9T196	Listeria_phage	1.3e-71	94.6
WP_003723290.1\|1323247_1323511_-	anti-CRISPR protein AcrIIA4	A0A2D0TCG7	unidentified_phage	1.9e-41	100.0
WP_031646278.1\|1323848_1324058_-	hypothetical protein	R4IBK5	Listeria_phage	7.5e-25	92.8
WP_009933528.1\|1324431_1324623_+	hypothetical protein	R4IBI5	Listeria_phage	8.9e-25	88.9
1324814:1324834	attL	NA	NA	NA	NA
WP_075356968.1\|1324851_1324953_-\|integrase	integrase	A0A059T688	Listeria_phage	7.0e-05	63.6
WP_003726037.1\|1325349_1325823_+	hypothetical protein	NA	NA	NA	NA
WP_009928186.1\|1325928_1326291_+	hypothetical protein	NA	NA	NA	NA
WP_031645846.1\|1329467_1331531_+	LapB repeat-containing protein	NA	NA	NA	NA
1326474:1326494	attR	NA	NA	NA	NA
WP_003726042.1\|1331653_1333012_+	DUF1254 domain-containing protein	NA	NA	NA	NA
WP_003726043.1\|1333054_1333648_-	hypothetical protein	NA	NA	NA	NA
WP_003726044.1\|1333784_1334192_-	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA
WP_003726045.1\|1334356_1334956_+	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	1.3e-29	41.0
WP_009928848.1\|1334987_1335248_-	hypothetical protein	NA	NA	NA	NA
WP_023550481.1\|1335371_1336784_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	4.9e-51	32.0
WP_003726048.1\|1336808_1337072_+	DUF3116 domain-containing protein	NA	NA	NA	NA
WP_003727535.1\|1337239_1337716_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
WP_003726050.1\|1337753_1337999_-	hypothetical protein	NA	NA	NA	NA
WP_003726051.1\|1337995_1339201_-	MFS transporter	NA	NA	NA	NA
WP_003726058.1\|1339221_1339407_-	hypothetical protein	NA	NA	NA	NA
WP_003726052.1\|1339405_1340065_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_003726053.1\|1340104_1340299_-	hypothetical protein	NA	NA	NA	NA
WP_003726054.1\|1340365_1341214_-	YitT family protein	NA	NA	NA	NA
WP_003726055.1\|1341831_1342545_+	trehalose operon repressor	NA	NA	NA	NA
WP_014929571.1\|1342575_1344222_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_003727531.1\|1344240_1345725_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA
WP_003726723.1\|1345842_1346304_+	NUDIX hydrolase	NA	NA	NA	NA
WP_003726717.1\|1346342_1346807_-	hypothetical protein	NA	NA	NA	NA
WP_003726718.1\|1346995_1347910_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_023550483.1\|1347935_1349183_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	7.2e-107	51.8
WP_003726720.1\|1349166_1349997_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	3.6e-46	42.4
WP_003734523.1\|1350143_1351283_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_003723563.1\|1351362_1351758_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003727524.1\|1351908_1352124_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003727523.1\|1352247_1352781_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003731300.1\|1352796_1353462_+	hypothetical protein	NA	NA	NA	NA
WP_003727521.1\|1353723_1354662_+	hypothetical protein	NA	NA	NA	NA
WP_003723884.1\|1354776_1356060_+	trigger factor	NA	NA	NA	NA
WP_003723886.1\|1356244_1357504_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2

DBSCAN-SWA_5

1898073 : 1906359

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003726209.1\|1898073_1898640_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.3e-26	36.4
WP_003726210.1\|1898636_1899686_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.2e-63	44.4
WP_003722245.1\|1899704_1901132_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_009918191.1\|1901116_1903336_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	6.5e-159	40.8
WP_060869034.1\|1903328_1904012_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003722248.1\|1904015_1904261_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003726214.1\|1904272_1904986_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	2.0e-40	38.3
WP_003729814.1\|1905066_1906359_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	33.0

DBSCAN-SWA_6

2578230 : 2586072

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003725407.1\|2578230_2579202_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_003731212.1\|2579209_2580178_-	YvcK family protein	A1IMD5	Streptococcus_phage	1.8e-68	43.6
WP_003722606.1\|2580179_2581055_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_009927825.1\|2581162_2582893_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	2.1e-173	53.1
WP_009918600.1\|2582934_2583996_-	galactose mutarotase	NA	NA	NA	NA
WP_009918601.1\|2584012_2584996_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.1e-52	38.7
WP_003722610.1\|2585112_2586072_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

Anti-CRISPR protein detection

Acr_ID: NZ_CP014250.1|WP_003723290.1|1323247_1323511_-|anti-CRISPR-protein-AcrIIA4

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP014250.1|WP_003723290.1|1323247_1323511_-|anti-CRISPR-protein-AcrIIA4

1323247_1323511_-

87 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|14	1.0	1	1.0

1255757-1357504

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014251

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP014250

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information