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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_AP014686 Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6b, complete sequence 0 crisprs RT 0 0 2 0
NZ_AP014688 Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence 0 crisprs PrimPol 0 0 1 0
NZ_AP014685 Bradyrhizobium diazoefficiens strain NK6 0 crisprs csa3,WYL,RT,DEDDh,PrimPol 0 0 35 0
NZ_AP014687 Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6c, complete sequence 0 crisprs PrimPol 0 0 1 0
NZ_AP014659 Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6a, complete sequence 0 crisprs cas3,RT 0 0 2 0

Results visualization

1. NZ_AP014685
Click the left colored region to show detailed information

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 212432 : 261117 41 Shigella_phage(40.0%) holin,protease,transposase,tRNA NA
DBSCAN-SWA_2 836954 : 905644 55 Staphylococcus_phage(22.22%) holin,transposase NA
DBSCAN-SWA_3 1114929 : 1148743 26 Stx2-converting_phage(28.57%) terminase,transposase NA
DBSCAN-SWA_4 1296818 : 1353831 50 Bacillus_virus(20.0%) protease,transposase,tRNA NA
DBSCAN-SWA_5 1441727 : 1500485 54 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_6 1704996 : 1853000 112 Planktothrix_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_7 2207307 : 2246151 24 uncultured_marine_virus(12.5%) protease,head,transposase NA
DBSCAN-SWA_8 2355531 : 2403116 39 uncultured_Mediterranean_phage(20.0%) transposase NA
DBSCAN-SWA_9 2407647 : 2592053 103 Shigella_phage(16.0%) holin,transposase NA
DBSCAN-SWA_10 2734043 : 2878014 93 Escherichia_phage(21.43%) transposase NA
DBSCAN-SWA_11 2885788 : 2982005 57 Paenibacillus_phage(20.0%) integrase,protease,transposase attL 2900925:2900984|attR 2968716:2969836
DBSCAN-SWA_12 3021459 : 3028549 6 Salmonella_phage(16.67%) NA NA
DBSCAN-SWA_13 3387748 : 3445424 40 Staphylococcus_phage(14.29%) protease,transposase NA
DBSCAN-SWA_14 4672411 : 4750565 49 Mycobacterium_phage(16.67%) transposase NA
DBSCAN-SWA_15 4756758 : 4833569 56 Planktothrix_phage(16.67%) protease,integrase,head,transposase attL 4808629:4808649|attR 4834536:4834556
DBSCAN-SWA_16 4870976 : 4924727 54 Rhizobium_phage(16.67%) integrase,transposase attL 4868222:4868237|attR 4879873:4879888
DBSCAN-SWA_17 5088339 : 5141777 51 Paramecium_bursaria_Chlorella_virus(25.0%) transposase NA
DBSCAN-SWA_18 5150827 : 5316384 116 Mycobacterium_phage(14.81%) integrase,transposase attL 5150814:5150873|attR 5327459:5328857
DBSCAN-SWA_19 5322796 : 5375508 38 Morganella_phage(18.18%) integrase,protease,transposase attL 5322522:5322581|attR 5362056:5362830
DBSCAN-SWA_20 5512636 : 5588536 51 uncultured_Caudovirales_phage(12.5%) integrase,transposase attL 5531612:5531627|attR 5576360:5576375
DBSCAN-SWA_21 5664081 : 5720720 54 Stx2-converting_phage(12.5%) transposase NA
DBSCAN-SWA_22 6329948 : 6366887 31 Roseobacter_phage(12.5%) integrase,transposase attL 6324025:6324071|attR 6346440:6346486
DBSCAN-SWA_23 6470679 : 6543549 48 Indivirus(25.0%) transposase NA
DBSCAN-SWA_24 7541222 : 7621880 53 Acinetobacter_phage(11.11%) plate,transposase NA
DBSCAN-SWA_25 7685186 : 7767548 49 Shigella_phage(20.0%) transposase NA
DBSCAN-SWA_26 7923762 : 7989299 51 Salmonella_phage(25.0%) protease,transposase NA
DBSCAN-SWA_27 8029029 : 8066222 40 Bradyrhizobium_phage(18.18%) plate,transposase NA
DBSCAN-SWA_28 8507346 : 8538701 44 Rhodobacter_phage(25.0%) portal,terminase,capsid,integrase,protease,tail attL 8497324:8497340|attR 8522410:8522426
DBSCAN-SWA_29 8572835 : 8607513 49 Bradyrhizobium_phage(82.05%) NA NA
DBSCAN-SWA_30 8611030 : 8624334 31 Bradyrhizobium_phage(86.67%) NA NA
DBSCAN-SWA_31 8631248 : 8635298 11 Bradyrhizobium_phage(100.0%) NA NA
DBSCAN-SWA_32 8638695 : 8703430 76 Bradyrhizobium_phage(86.96%) terminase,plate,integrase,transposase,tail attL 8672232:8672249|attR 8713975:8713992
DBSCAN-SWA_33 8718344 : 8727992 9 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_34 8739819 : 8805625 53 Burkholderia_virus(14.29%) protease,transposase,tRNA NA
DBSCAN-SWA_35 9064051 : 9133380 62 uncultured_Mediterranean_phage(56.25%) tail,integrase,transposase,tRNA attL 9070643:9070702|attR 9127881:9129007

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_AP014659
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3467 : 71026 45 Bacillus_phage(10.0%) transposase,integrase attL 40555:40573|attR 77433:77451
DBSCAN-SWA_2 89267 : 174189 53 Mycobacterium_phage(42.86%) transposase,integrase attL 90609:90645|attR 144395:144431

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_AP014686
Click the left colored region to show detailed information

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 20892 : 85197 46 Mycobacterium_phage(56.25%) transposase NA
DBSCAN-SWA_2 93330 : 180514 47 Enterobacteria_phage(29.41%) integrase,transposase attL 163886:163902|attR 183708:183724

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_AP014687
Click the left colored region to show detailed information

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 45 : 55538 44 Burkholderia_virus(20.0%) integrase,transposase attL 34388:34417|attR 37706:37735

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
5. NZ_AP014688
Click the left colored region to show detailed information

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27309 : 108607 55 Paramecium_bursaria_Chlorella_virus(22.22%) transposase NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage