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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP014227 Capnocytophaga haemolytica strain CCUG 32990 chromosome, complete genome 5 crisprs WYL,cas3,DEDDh 0 0 196 0

Results visualization

1. NZ_CP014227
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014227_1 62054-62175 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014227_2 1479737-1479857 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014227_3 2046156-2046259 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014227_4 2119439-2119654 Orphan NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014227_5 2183187-2183382 Orphan NA
4 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 1041 1 Mollivirus(100.0%) NA NA
DBSCAN-SWA_2 8716 : 10147 1 Acanthamoeba_polyphaga_moumouvirus(100.0%) tRNA NA
DBSCAN-SWA_3 13558 : 21336 10 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_4 27590 : 28205 1 Bacillus_thuringiensis_phage(100.0%) NA NA
DBSCAN-SWA_5 32135 : 36334 4 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_6 52649 : 53975 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_7 71585 : 73472 1 Mollivirus(100.0%) NA NA
DBSCAN-SWA_8 90677 : 99034 6 Tenacibaculum_phage(33.33%) tRNA NA
DBSCAN-SWA_9 105281 : 106574 1 Listeria_phage(100.0%) NA NA
DBSCAN-SWA_10 124197 : 125136 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_11 131020 : 133816 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_12 144929 : 145697 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_13 159048 : 161889 1 Staphylococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_14 172000 : 177135 6 Ralstonia_phage(25.0%) NA NA
DBSCAN-SWA_15 181296 : 192423 5 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_16 197075 : 197741 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_17 202522 : 203542 1 Tupanvirus(100.0%) tRNA NA
DBSCAN-SWA_18 223949 : 237837 10 Orpheovirus(20.0%) tRNA NA
DBSCAN-SWA_19 260548 : 262702 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_20 281426 : 282026 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_21 307432 : 308062 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_22 333209 : 333512 1 Riemerella_phage(100.0%) NA NA
DBSCAN-SWA_23 342202 : 344395 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_24 354701 : 356123 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_25 369874 : 371768 2 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_26 382602 : 384309 1 Escherichia_phage(100.0%) tRNA NA
DBSCAN-SWA_27 388091 : 392088 3 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_28 406082 : 406313 1 Salicola_phage(100.0%) NA NA
DBSCAN-SWA_29 417166 : 418192 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_30 423544 : 424111 1 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_31 432209 : 435084 5 Streptococcus_virus(50.0%) NA NA
DBSCAN-SWA_32 454272 : 455346 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_33 458429 : 459350 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_34 473851 : 476887 1 Norovirus(100.0%) NA NA
DBSCAN-SWA_35 479923 : 485297 3 Lactobacillus_phage(50.0%) NA NA
DBSCAN-SWA_36 511196 : 519854 7 Tokyovirus(25.0%) NA NA
DBSCAN-SWA_37 524964 : 525906 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_38 529137 : 537581 9 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_39 540717 : 552346 9 Acinetobacter_phage(20.0%) tRNA NA
DBSCAN-SWA_40 557546 : 559482 2 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_41 596882 : 597605 1 Cellulophaga_phage(100.0%) NA NA
DBSCAN-SWA_42 605627 : 613145 3 Geobacillus_virus(50.0%) NA NA
DBSCAN-SWA_43 650048 : 653717 1 Microbacterium_phage(100.0%) NA NA
DBSCAN-SWA_44 668060 : 670022 1 Flavobacterium_phage(100.0%) NA NA
DBSCAN-SWA_45 678079 : 681397 5 Prochlorococcus_phage(50.0%) NA NA
DBSCAN-SWA_46 692343 : 693825 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_47 702531 : 708414 7 environmental_halophage(33.33%) tRNA NA
DBSCAN-SWA_48 712162 : 713008 1 Yellowstone_lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_49 717364 : 721149 3 Streptomyces_phage(50.0%) NA NA
DBSCAN-SWA_50 729790 : 732793 2 Tupanvirus(50.0%) tRNA NA
DBSCAN-SWA_51 736009 : 737218 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_52 741211 : 742012 1 Hokovirus(100.0%) transposase NA
DBSCAN-SWA_53 753977 : 757781 1 Cafeteria_roenbergensis_virus(100.0%) NA NA
DBSCAN-SWA_54 762513 : 766818 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_55 772621 : 777906 5 uncultured_Caudovirales_phage(33.33%) NA NA
DBSCAN-SWA_56 782321 : 784430 3 Agrobacterium_phage(50.0%) NA NA
DBSCAN-SWA_57 787870 : 788614 1 Cedratvirus(100.0%) NA NA
DBSCAN-SWA_58 794725 : 801048 5 Planktothrix_phage(33.33%) tRNA NA
DBSCAN-SWA_59 807694 : 808213 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_60 812334 : 821158 5 Saccharomonospora_phage(50.0%) NA NA
DBSCAN-SWA_61 825633 : 834531 7 Cronobacter_phage(33.33%) NA NA
DBSCAN-SWA_62 845723 : 846974 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_63 856322 : 856532 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_64 902054 : 903786 2 Cellulophaga_phage(50.0%) NA NA
DBSCAN-SWA_65 907679 : 908447 1 Chrysochromulina_ericina_virus(100.0%) NA NA
DBSCAN-SWA_66 913020 : 913776 1 Riemerella_phage(100.0%) NA NA
DBSCAN-SWA_67 928310 : 928616 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_68 932684 : 933299 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_69 944635 : 945574 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_70 954979 : 956776 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_71 961445 : 963340 2 Agrobacterium_phage(50.0%) protease NA
DBSCAN-SWA_72 977613 : 980328 2 Rhodococcus_phage(50.0%) NA NA
DBSCAN-SWA_73 983410 : 986002 1 Agrobacterium_phage(100.0%) NA NA
DBSCAN-SWA_74 996670 : 998221 1 Skua_adenovirus(100.0%) NA NA
DBSCAN-SWA_75 1004754 : 1005501 1 Brazilian_cedratvirus(100.0%) NA NA
DBSCAN-SWA_76 1009974 : 1010673 1 Sulfolobus_monocaudavirus(100.0%) NA NA
DBSCAN-SWA_77 1014442 : 1016548 1 Indivirus(100.0%) tRNA NA
DBSCAN-SWA_78 1050235 : 1052005 1 Sinorhizobium_phage(100.0%) NA NA
DBSCAN-SWA_79 1062602 : 1064000 1 Tupanvirus(100.0%) tRNA NA
DBSCAN-SWA_80 1069727 : 1078739 6 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_81 1083474 : 1083963 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_82 1116112 : 1116763 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_83 1131174 : 1136291 5 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_84 1141135 : 1142548 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_85 1147995 : 1148610 1 Acanthamoeba_polyphaga_mimivirus(100.0%) NA NA
DBSCAN-SWA_86 1156087 : 1157053 1 Erwinia_phage(100.0%) NA NA
DBSCAN-SWA_87 1163540 : 1169581 3 Hokovirus(50.0%) transposase NA
DBSCAN-SWA_88 1186270 : 1187233 1 uncultured_phage(100.0%) NA NA
DBSCAN-SWA_89 1195045 : 1197771 2 Catovirus(50.0%) NA NA
DBSCAN-SWA_90 1201362 : 1207543 3 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_91 1215088 : 1216944 2 Salmonella_virus(50.0%) NA NA
DBSCAN-SWA_92 1233334 : 1234567 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_93 1240955 : 1245367 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_94 1256534 : 1258187 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_95 1263184 : 1265027 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_96 1268204 : 1270274 1 Ostreococcus_lucimarinus_virus(100.0%) NA NA
DBSCAN-SWA_97 1284665 : 1285154 1 Tetraselmis_virus(100.0%) NA NA
DBSCAN-SWA_98 1308644 : 1329715 24 Riemerella_phage(37.5%) portal,integrase,tail,terminase attL 1303410:1303425|attR 1310096:1310111
DBSCAN-SWA_99 1333460 : 1355670 29 Riemerella_phage(42.86%) NA NA
DBSCAN-SWA_100 1365449 : 1366277 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_101 1371757 : 1372495 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_102 1378892 : 1380725 1 Wolbachia_phage(100.0%) NA NA
DBSCAN-SWA_103 1384006 : 1385854 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_104 1399197 : 1403370 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_105 1408936 : 1411258 2 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_106 1423855 : 1424683 1 Singapore_grouper_iridovirus(100.0%) NA NA
DBSCAN-SWA_107 1427958 : 1439125 11 Catovirus(40.0%) NA NA
DBSCAN-SWA_108 1443013 : 1449387 5 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_109 1453777 : 1455256 1 Tupanvirus(100.0%) tRNA NA
DBSCAN-SWA_110 1469018 : 1488898 18 Chrysochromulina_ericina_virus(22.22%) NA NA
DBSCAN-SWA_111 1512438 : 1513563 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_112 1518824 : 1520354 1 Klebsiella_phage(100.0%) NA NA
DBSCAN-SWA_113 1535078 : 1535960 1 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_114 1541543 : 1543640 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_115 1557795 : 1560281 2 Salmonella_phage(50.0%) tRNA NA
DBSCAN-SWA_116 1569706 : 1571411 2 Natrialba_phage(50.0%) NA NA
DBSCAN-SWA_117 1590166 : 1591252 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_118 1603982 : 1604894 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_119 1610545 : 1612237 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_120 1638777 : 1640397 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_121 1659164 : 1665045 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_122 1678151 : 1679282 1 uncultured_Mediterranean_phage(100.0%) tRNA NA
DBSCAN-SWA_123 1694397 : 1699371 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_124 1708225 : 1709293 1 Brevibacillus_phage(100.0%) NA NA
DBSCAN-SWA_125 1721393 : 1721933 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_126 1729155 : 1729542 1 Lactobacillus_prophage(100.0%) NA NA
DBSCAN-SWA_127 1738321 : 1746592 10 Cellulophaga_phage(33.33%) NA NA
DBSCAN-SWA_128 1749638 : 1759623 10 Yellowstone_lake_mimivirus(20.0%) NA NA
DBSCAN-SWA_129 1765636 : 1767259 1 Only_Syngen_Nebraska_virus(100.0%) NA NA
DBSCAN-SWA_130 1777950 : 1778790 1 Moumouvirus(100.0%) NA NA
DBSCAN-SWA_131 1782646 : 1784302 1 Agrobacterium_phage(100.0%) NA NA
DBSCAN-SWA_132 1790615 : 1791893 1 Aeromonas_phage(100.0%) NA NA
DBSCAN-SWA_133 1805301 : 1811973 5 Phaseolus_vulgaris_alphaendornavirus(33.33%) NA NA
DBSCAN-SWA_134 1837277 : 1838123 1 Micromonas_pusilla_virus(100.0%) NA NA
DBSCAN-SWA_135 1844038 : 1844950 1 Brevibacillus_phage(100.0%) integrase attL 1835265:1835280|attR 1849310:1849325
DBSCAN-SWA_136 1850187 : 1851261 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_137 1860620 : 1864322 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_138 1868634 : 1874440 6 uncultured_Mediterranean_phage(25.0%) NA NA
DBSCAN-SWA_139 1887328 : 1893009 3 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_140 1896139 : 1899669 4 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_141 1903174 : 1904881 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_142 1911924 : 1914186 2 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_143 1920946 : 1928887 4 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_144 1937961 : 1948734 11 Staphylococcus_phage(28.57%) NA NA
DBSCAN-SWA_145 1952359 : 1953949 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_146 1965184 : 1967524 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_147 1975339 : 1981166 6 Flavobacterium_phage(33.33%) NA NA
DBSCAN-SWA_148 2000034 : 2000598 1 Cowpox_virus(100.0%) NA NA
DBSCAN-SWA_149 2007058 : 2007634 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_150 2022812 : 2023946 1 Deep-sea_thermophilic_phage(100.0%) NA NA
DBSCAN-SWA_151 2028443 : 2033112 3 Pandoravirus(50.0%) NA NA
DBSCAN-SWA_152 2039178 : 2041269 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_153 2052356 : 2053889 1 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_154 2063389 : 2070377 7 Pandoravirus(66.67%) tRNA NA
DBSCAN-SWA_155 2073461 : 2089871 13 Catovirus(14.29%) integrase attL 2067953:2067967|attR 2096831:2096845
DBSCAN-SWA_156 2100068 : 2106218 3 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_157 2113891 : 2118454 4 Faustovirus(33.33%) NA NA
DBSCAN-SWA_158 2127206 : 2130656 2 Bacillus_phage(50.0%) protease NA
DBSCAN-SWA_159 2141773 : 2144002 1 unidentified_phage(100.0%) NA NA
DBSCAN-SWA_160 2165665 : 2171611 5 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_161 2190177 : 2193510 3 Salmonella_phage(66.67%) NA NA
DBSCAN-SWA_162 2197539 : 2199090 1 uncultured_marine_virus(100.0%) NA NA
DBSCAN-SWA_163 2221792 : 2224651 1 Yellowstone_lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_164 2229763 : 2230786 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_165 2238246 : 2241489 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_166 2246531 : 2250965 3 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_167 2256134 : 2264390 7 Bacillus_phage(40.0%) NA NA
DBSCAN-SWA_168 2268548 : 2269844 1 Serratia_phage(100.0%) tRNA NA
DBSCAN-SWA_169 2275392 : 2278134 1 Cafeteria_roenbergensis_virus(100.0%) NA NA
DBSCAN-SWA_170 2306785 : 2310859 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_171 2320689 : 2321130 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_172 2326360 : 2331226 3 Mollivirus(33.33%) NA NA
DBSCAN-SWA_173 2345059 : 2351035 6 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_174 2361913 : 2363656 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_175 2370945 : 2374833 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_176 2391105 : 2394745 3 Only_Syngen_Nebraska_virus(33.33%) tRNA NA
DBSCAN-SWA_177 2399614 : 2400247 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_178 2417094 : 2418117 1 Moraxella_phage(100.0%) tRNA NA
DBSCAN-SWA_179 2434881 : 2435934 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_180 2440439 : 2443538 1 Herpes_simplex_virus(100.0%) NA NA
DBSCAN-SWA_181 2447295 : 2448147 1 Bordetella_phage(100.0%) NA NA
DBSCAN-SWA_182 2462812 : 2463268 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_183 2486897 : 2492515 6 Catovirus(33.33%) NA NA
DBSCAN-SWA_184 2499399 : 2503233 4 Sphingobium_phage(50.0%) NA NA
DBSCAN-SWA_185 2521367 : 2523359 1 Ralstonia_phage(100.0%) NA NA
DBSCAN-SWA_186 2554054 : 2562304 4 Prochlorococcus_phage(33.33%) NA NA
DBSCAN-SWA_187 2567595 : 2573379 9 Brazilian_cedratvirus(33.33%) NA NA
DBSCAN-SWA_188 2576935 : 2578564 1 Pike_perch_iridovirus(100.0%) NA NA
DBSCAN-SWA_189 2588155 : 2594035 8 Moumouvirus(33.33%) NA NA
DBSCAN-SWA_190 2599961 : 2600894 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_191 2616675 : 2618796 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_192 2626483 : 2636140 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_193 2641516 : 2643461 2 Heterosigma_akashiwo_virus(50.0%) NA NA
DBSCAN-SWA_194 2648794 : 2654014 5 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_195 2659510 : 2660521 1 Heterosigma_akashiwo_virus(100.0%) NA NA
DBSCAN-SWA_196 2681310 : 2683953 1 Catovirus(100.0%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage