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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP014230 Desulfomicrobium orale DSM 12838 chromosome, complete genome 4 crisprs cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3HD,cas3,DEDDh,DinG,cas4,cas7,cas8c,cas5,csa3 0 7 8 0

Results visualization

1. NZ_CP014230
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014230_1 1079901-1080014 TypeIII NA
1 spacers
csx1,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014230_2 1080798-1082296 TypeIII NA
19 spacers
csx1,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014230_3 2151640-2151714 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014230_4 2226984-2228900 TypeI NA
28 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP014230_3 3.1|2151664|27|NZ_CP014230|CRISPRCasFinder 2151664-2151690 27 NZ_CP044991 Deinococcus sp. AJ005 plasmid p115k, complete sequence 30153-30179 5 0.815
NZ_CP014230_4 4.1|2227016|34|NZ_CP014230|CRT 2227016-2227049 34 NC_005073 Rhodococcus erythropolis linear plasmid pBD2, complete sequence 146089-146122 8 0.765
NZ_CP014230_4 4.5|2227285|38|NZ_CP014230|CRT,PILER-CR,CRISPRCasFinder 2227285-2227322 38 NZ_CP045303 Azotobacter salinestris strain KACC 13899 plasmid unnamed1, complete sequence 258709-258746 9 0.763
NZ_CP014230_4 4.5|2227285|38|NZ_CP014230|CRT,PILER-CR,CRISPRCasFinder 2227285-2227322 38 NZ_CP010421 Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence 87960-87997 9 0.763
NZ_CP014230_4 4.7|2227423|38|NZ_CP014230|CRT,PILER-CR,CRISPRCasFinder 2227423-2227460 38 NZ_CP045303 Azotobacter salinestris strain KACC 13899 plasmid unnamed1, complete sequence 258709-258746 9 0.763
NZ_CP014230_4 4.7|2227423|38|NZ_CP014230|CRT,PILER-CR,CRISPRCasFinder 2227423-2227460 38 NZ_CP010421 Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence 87960-87997 9 0.763
NZ_CP014230_4 4.21|2228364|35|NZ_CP014230|CRT,PILER-CR,CRISPRCasFinder 2228364-2228398 35 JX100810 Caulobacter phage CcrColossus, complete genome 23702-23736 9 0.743
NZ_CP014230_4 4.10|2227629|33|NZ_CP014230|CRT,PILER-CR,CRISPRCasFinder 2227629-2227661 33 NZ_CP038636 Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence 505437-505469 10 0.697
NZ_CP014230_4 4.18|2228164|35|NZ_CP014230|CRT,PILER-CR,CRISPRCasFinder 2228164-2228198 35 NC_047912 Faecalibacterium phage FP_Lugh, complete genome 30794-30828 11 0.686

1. spacer 3.1|2151664|27|NZ_CP014230|CRISPRCasFinder matches to NZ_CP044991 (Deinococcus sp. AJ005 plasmid p115k, complete sequence) position: , mismatch: 5, identity: 0.815

aggcggaccaccctgaaaagtgtctcc	CRISPR spacer
tggcgggccaccctgaaaagtggggcc	Protospacer
 *****.***************   **

2. spacer 4.1|2227016|34|NZ_CP014230|CRT matches to NC_005073 (Rhodococcus erythropolis linear plasmid pBD2, complete sequence) position: , mismatch: 8, identity: 0.765

--acggatcaggatgccgtggcctgctccctggcgg	CRISPR spacer
cagcgggc--gaatgccgtggcctgctccacggcgg	Protospacer
  .***..  *.***************** .*****

3. spacer 4.5|2227285|38|NZ_CP014230|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP045303 (Azotobacter salinestris strain KACC 13899 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.763

cttgtcagccgtggaaaccctttcaaggctttcaaggg	CRISPR spacer
cctatttatcgtggacaccatttcaaggctttcaagcg	Protospacer
*.*.*. ..****** *** **************** *

4. spacer 4.5|2227285|38|NZ_CP014230|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP010421 (Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence) position: , mismatch: 9, identity: 0.763

cttgtcagccgtggaaaccctttcaaggctttcaaggg	CRISPR spacer
cctatttatcgtggacaccatttcaaggctttcaagcg	Protospacer
*.*.*. ..****** *** **************** *

5. spacer 4.7|2227423|38|NZ_CP014230|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP045303 (Azotobacter salinestris strain KACC 13899 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.763

cttgtcagccgtggaaaccctttcaaggctttcaaggg	CRISPR spacer
cctatttatcgtggacaccatttcaaggctttcaagcg	Protospacer
*.*.*. ..****** *** **************** *

6. spacer 4.7|2227423|38|NZ_CP014230|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP010421 (Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence) position: , mismatch: 9, identity: 0.763

cttgtcagccgtggaaaccctttcaaggctttcaaggg	CRISPR spacer
cctatttatcgtggacaccatttcaaggctttcaagcg	Protospacer
*.*.*. ..****** *** **************** *

7. spacer 4.21|2228364|35|NZ_CP014230|CRT,PILER-CR,CRISPRCasFinder matches to JX100810 (Caulobacter phage CcrColossus, complete genome) position: , mismatch: 9, identity: 0.743

--ccggtcggaaagggaaagccgctcatcgagccgaa	CRISPR spacer
ggcagg--ggaaagggaaagccgctcatagtgcgagc	Protospacer
  * **  ******************** * ** .. 

8. spacer 4.10|2227629|33|NZ_CP014230|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

ggcccagcaggatgccgggcacaacaacaaaac	CRISPR spacer
gttggcgcaggctgccgggcacgacaacaacta	Protospacer
* .   ***** **********.*******   

9. spacer 4.18|2228164|35|NZ_CP014230|CRT,PILER-CR,CRISPRCasFinder matches to NC_047912 (Faecalibacterium phage FP_Lugh, complete genome) position: , mismatch: 11, identity: 0.686

gtcgagtccgccgcgagcgcgaagaacgcatgatc	CRISPR spacer
accaagtccgccgccagcgagaagaacgccaagga	Protospacer
..*.********** **** *********  ..  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1235908 : 1294898 49 uncultured_virus(16.67%) tRNA,transposase,protease NA
DBSCAN-SWA_2 1400954 : 1411110 10 Staphylococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_3 1935423 : 1998838 55 Bacillus_phage(20.0%) tRNA,transposase,protease NA
DBSCAN-SWA_4 2090481 : 2128635 40 Bacillus_virus(22.22%) tRNA,transposase NA
DBSCAN-SWA_5 2253520 : 2320315 56 Lake_Baikal_phage(28.57%) tRNA,protease,transposase,holin NA
DBSCAN-SWA_6 2336843 : 2402072 59 Paenibacillus_phage(25.0%) tRNA,transposase,integrase,protease attL 2334788:2334801|attR 2343479:2343492
DBSCAN-SWA_7 2494418 : 2588896 84 Planktothrix_phage(22.22%) holin,protease,transposase NA
DBSCAN-SWA_8 2641238 : 2648782 9 Shigella_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage