CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014038	Vibrio harveyi strain FDAARGOS_107 chromosome 1, complete sequence	2 crisprs	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,csa3,cas3,DinG,csx1	1	14	3	0
NZ_CP014039	Vibrio harveyi strain FDAARGOS_107 chromosome 2, complete sequence	0 crisprs	csa3,DEDDh,cas3,csx1	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014038_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014038_1

73377-75664

TypeI-E

Consensus_repeat	Method
GTGTTCTCCGTACCCACGGAGATGAACCG	CRISPRCasFinder
GTGTTCTCCGTACCCACGGAGATGAACCG	CRT
GTGTTCTCCGTACCCACGGAGATGAACCG	PILER-CR

37 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP014038_1

>merge|NZ_CP014038|1|73377-75664|CRISPRCasFinder,CRT,PILER-CR
GTGTTCTCCGTACCCACGGAGATGAACCGCGCGCAATGTCGGCAGCTCTGGCGCGCTGCTGGTGTTCTCCGTACCCACGGAGATGAACCGCTTAAACGTTAGCTGGTAATAATCGCCCTTTAGTGTTCTCCGTACCCACGGAGATGAACCGCGCGTTTGTTACCCATTCTCTATCGCGTTGTGGTGTTCTCCGTACCCACGGAGATGAACCGTTTGTGTCTGCCTCGATGTCGCTCATCATCTCGTGTTCTCCGTACCCACGGAGATGAACCGAAATCGTAGTATAAGTATTCACATTTGCAAATGTGTTCTCCGTACCCACGGAGATGAACCGACACTTCTTTGTGTTGAGCAGTTCGCCAATGGGTGTTCTCCGTACCCACGGAGATGAACCGTAAACGCGCTGATATGGATCGTTTGGTATTGGGTGTTCTCCGTACCCACGGAGATGAACCGATTACAAGCCTGGGACGATGATTATTCACAAGGTGTTCTCCGTACCCACGGAGATGAACCGTTTACACCGATTACAAGTCACTCAAAGAAAAAGTGTTCTCCGTACCCACGGAGATGAACCGCCTAGATAGTTTGGAGTTTATCGACATGACTGGTGTTCTCCGTACCCACGGAGATGAACCGAGACTTATCCCATAGAGCATTTCCAGACTTAAGTGTTCTCCGTACCCACGGAGATGAACCGGAAGCAGACAGACGAGCGCACGATGGCGTTACGTGTTCTCCGTACCCACGGAGATGAACCGTCAACGGTTAGATCAGAGTTAGCCTTTCGCATGTGTTCTCCGTACCCACGGAGATGAACCGCGGATCTTGACTTTATGGCTGTAGACAATCCAAGTGTTCTCCGTACCCACGGAGATGAACCGGTAATGGTCTGCCTAACATCGTTGATGTTATGGTGTTCTCCGTACCCACGGAGATGAACCGGGTGTATTACTTGGTACACACTTACACTTCACGTGTTCTCCGTACCCACGGAGATGAACCGCCAGTAAGCGATAGCGCGCTAGTCCGTGCCACGTGTTCTCCGTACCCACGGAGATGAACCGCGTGACATTTGACGTAACAGCTTTGCCTATGTGTGTTCTCCGTACCCACGGAGATGAACCGCGTCCAGCGGCAGGAATGACCACATCTGAGTCGTGTTCTCCGTACCCACGGAGATGAACCGTGTGATGTAGGTGTAAACACGACCAAATCAGTGTGTTCTCCGTACCCACGGAGATGAACCGCGGTGCTGTAGCAAAATGATGATGTCAGTAACGGTGTTCTCCGTACCCACGGAGATGAACCGCAATCAGCAAAAGCATGGTGGTGGATAACAACGTGTTCTCCGTACCCACGGAGATGAACCGCCAACCGTCACGAGTAAATTTATCGCCAGTGTGTGTTCTCCGTACCCACGGAGATGAACCGCAATGCAGGCTGGCGACCTGAAGACGGCAAAAGTGTTCTCCGTACCCACGGAGATGAACCGGTCAAACATTTTGAATGGATAGATTATGAGTAGTGTTCTCCGTACCCACGGAGATGAACCGTTGTTCCGGCTGGTACCGCTGATTCAGTTCAGGTGTTCTCCGTACCCACGGAGATGAACCGCACTTGGAGTTATTGATCGAGAGTGATCAAAAGTGTTCTCCGTACCCACGGAGATGAACCGTGACTACATTCTGTCAATGGAGTATTGGGAGAGTGTTCTCCGTACCCACGGAGATGAACCGAGCATCAGCAATATCCTTGGGTAGTTCATCAGGTGTTCTCCGTACCCACGGAGATGAACCGCCATATCAGACTGAGTAGATACAACAGATAAAGTGTTCTCCGTACCCACGGAGATGAACCGGACACAAAGAACAAATATGGCATCGATAACAGGTGTTCTCCGTACCCACGGAGATGAACCGTATCAAAGAACATCTGCATGCACTCTTCATAGGTGTTCTCCGTACCCACGGAGATGAACCGAGTCACCGGGTAAGACCGGAACGGTAGAAAGAGTGTTCTCCGTACCCACGGAGATGAACCGATCGCGCTATCACATTCGTTTTGAGCCATACCGTGTTCTCCGTACCCACGGAGATGAACCGCTGATTTGCTTTCTTTTGCTGGCTCGTCCTTTGTGTTCTCCGTACCCACGGAGATGAACCGCCTCGGAAATATACGACGAAATTTACAAGAAAGTGTTCTCCGTACCCACGGAGATGAACCGATAATCACGTTGATACTTACCAGCATCTTTTGGTGTTCTCCGTACCCACGGAGATGAGCCA

>NZ_CP014038|1|1|73377-75664|CRISPRCasFinder
GTGTTCTCCGTACCCACGGAGATGAACCG	CGCGCAATGTCGGCAGCTCTGGCGCGCTGCTG
GTGTTCTCCGTACCCACGGAGATGAACCG	CTTAAACGTTAGCTGGTAATAATCGCCCTTTA
GTGTTCTCCGTACCCACGGAGATGAACCG	CGCGTTTGTTACCCATTCTCTATCGCGTTGTG
GTGTTCTCCGTACCCACGGAGATGAACCG	TTTGTGTCTGCCTCGATGTCGCTCATCATCTC
GTGTTCTCCGTACCCACGGAGATGAACCG	AAATCGTAGTATAAGTATTCACATTTGCAAAT
GTGTTCTCCGTACCCACGGAGATGAACCG	ACACTTCTTTGTGTTGAGCAGTTCGCCAATGG
GTGTTCTCCGTACCCACGGAGATGAACCG	TAAACGCGCTGATATGGATCGTTTGGTATTGG
GTGTTCTCCGTACCCACGGAGATGAACCG	ATTACAAGCCTGGGACGATGATTATTCACAAG
GTGTTCTCCGTACCCACGGAGATGAACCG	TTTACACCGATTACAAGTCACTCAAAGAAAAA
GTGTTCTCCGTACCCACGGAGATGAACCG	CCTAGATAGTTTGGAGTTTATCGACATGACTG
GTGTTCTCCGTACCCACGGAGATGAACCG	AGACTTATCCCATAGAGCATTTCCAGACTTAA
GTGTTCTCCGTACCCACGGAGATGAACCG	GAAGCAGACAGACGAGCGCACGATGGCGTTAC
GTGTTCTCCGTACCCACGGAGATGAACCG	TCAACGGTTAGATCAGAGTTAGCCTTTCGCAT
GTGTTCTCCGTACCCACGGAGATGAACCG	CGGATCTTGACTTTATGGCTGTAGACAATCCAA
GTGTTCTCCGTACCCACGGAGATGAACCG	GTAATGGTCTGCCTAACATCGTTGATGTTATG
GTGTTCTCCGTACCCACGGAGATGAACCG	GGTGTATTACTTGGTACACACTTACACTTCAC
GTGTTCTCCGTACCCACGGAGATGAACCG	CCAGTAAGCGATAGCGCGCTAGTCCGTGCCAC
GTGTTCTCCGTACCCACGGAGATGAACCG	CGTGACATTTGACGTAACAGCTTTGCCTATGT
GTGTTCTCCGTACCCACGGAGATGAACCG	CGTCCAGCGGCAGGAATGACCACATCTGAGTC
GTGTTCTCCGTACCCACGGAGATGAACCG	TGTGATGTAGGTGTAAACACGACCAAATCAGT
GTGTTCTCCGTACCCACGGAGATGAACCG	CGGTGCTGTAGCAAAATGATGATGTCAGTAACG
GTGTTCTCCGTACCCACGGAGATGAACCG	CAATCAGCAAAAGCATGGTGGTGGATAACAAC
GTGTTCTCCGTACCCACGGAGATGAACCG	CCAACCGTCACGAGTAAATTTATCGCCAGTGT
GTGTTCTCCGTACCCACGGAGATGAACCG	CAATGCAGGCTGGCGACCTGAAGACGGCAAAA
GTGTTCTCCGTACCCACGGAGATGAACCG	GTCAAACATTTTGAATGGATAGATTATGAGTA
GTGTTCTCCGTACCCACGGAGATGAACCG	TTGTTCCGGCTGGTACCGCTGATTCAGTTCAG
GTGTTCTCCGTACCCACGGAGATGAACCG	CACTTGGAGTTATTGATCGAGAGTGATCAAAA
GTGTTCTCCGTACCCACGGAGATGAACCG	TGACTACATTCTGTCAATGGAGTATTGGGAGA
GTGTTCTCCGTACCCACGGAGATGAACCG	AGCATCAGCAATATCCTTGGGTAGTTCATCAG
GTGTTCTCCGTACCCACGGAGATGAACCG	CCATATCAGACTGAGTAGATACAACAGATAAA
GTGTTCTCCGTACCCACGGAGATGAACCG	GACACAAAGAACAAATATGGCATCGATAACAG
GTGTTCTCCGTACCCACGGAGATGAACCG	TATCAAAGAACATCTGCATGCACTCTTCATAG
GTGTTCTCCGTACCCACGGAGATGAACCG	AGTCACCGGGTAAGACCGGAACGGTAGAAAGA
GTGTTCTCCGTACCCACGGAGATGAACCG	ATCGCGCTATCACATTCGTTTTGAGCCATACC
GTGTTCTCCGTACCCACGGAGATGAACCG	CTGATTTGCTTTCTTTTGCTGGCTCGTCCTTT
GTGTTCTCCGTACCCACGGAGATGAACCG	CCTCGGAAATATACGACGAAATTTACAAGAAA
GTGTTCTCCGTACCCACGGAGATGAACCG	ATAATCACGTTGATACTTACCAGCATCTTTTG
GTGTTCTCCGTACCCACGGAGATGAGCCA

>NZ_CP014038|1|1|73377-75664|CRT
GTGTTCTCCGTACCCACGGAGATGAACCG	CGCGCAATGTCGGCAGCTCTGGCGCGCTGCTG
GTGTTCTCCGTACCCACGGAGATGAACCG	CTTAAACGTTAGCTGGTAATAATCGCCCTTTA
GTGTTCTCCGTACCCACGGAGATGAACCG	CGCGTTTGTTACCCATTCTCTATCGCGTTGTG
GTGTTCTCCGTACCCACGGAGATGAACCG	TTTGTGTCTGCCTCGATGTCGCTCATCATCTC
GTGTTCTCCGTACCCACGGAGATGAACCG	AAATCGTAGTATAAGTATTCACATTTGCAAAT
GTGTTCTCCGTACCCACGGAGATGAACCG	ACACTTCTTTGTGTTGAGCAGTTCGCCAATGG
GTGTTCTCCGTACCCACGGAGATGAACCG	TAAACGCGCTGATATGGATCGTTTGGTATTGG
GTGTTCTCCGTACCCACGGAGATGAACCG	ATTACAAGCCTGGGACGATGATTATTCACAAG
GTGTTCTCCGTACCCACGGAGATGAACCG	TTTACACCGATTACAAGTCACTCAAAGAAAAA
GTGTTCTCCGTACCCACGGAGATGAACCG	CCTAGATAGTTTGGAGTTTATCGACATGACTG
GTGTTCTCCGTACCCACGGAGATGAACCG	AGACTTATCCCATAGAGCATTTCCAGACTTAA
GTGTTCTCCGTACCCACGGAGATGAACCG	GAAGCAGACAGACGAGCGCACGATGGCGTTAC
GTGTTCTCCGTACCCACGGAGATGAACCG	TCAACGGTTAGATCAGAGTTAGCCTTTCGCAT
GTGTTCTCCGTACCCACGGAGATGAACCG	CGGATCTTGACTTTATGGCTGTAGACAATCCAA
GTGTTCTCCGTACCCACGGAGATGAACCG	GTAATGGTCTGCCTAACATCGTTGATGTTATG
GTGTTCTCCGTACCCACGGAGATGAACCG	GGTGTATTACTTGGTACACACTTACACTTCAC
GTGTTCTCCGTACCCACGGAGATGAACCG	CCAGTAAGCGATAGCGCGCTAGTCCGTGCCAC
GTGTTCTCCGTACCCACGGAGATGAACCG	CGTGACATTTGACGTAACAGCTTTGCCTATGT
GTGTTCTCCGTACCCACGGAGATGAACCG	CGTCCAGCGGCAGGAATGACCACATCTGAGTC
GTGTTCTCCGTACCCACGGAGATGAACCG	TGTGATGTAGGTGTAAACACGACCAAATCAGT
GTGTTCTCCGTACCCACGGAGATGAACCG	CGGTGCTGTAGCAAAATGATGATGTCAGTAACG
GTGTTCTCCGTACCCACGGAGATGAACCG	CAATCAGCAAAAGCATGGTGGTGGATAACAAC
GTGTTCTCCGTACCCACGGAGATGAACCG	CCAACCGTCACGAGTAAATTTATCGCCAGTGT
GTGTTCTCCGTACCCACGGAGATGAACCG	CAATGCAGGCTGGCGACCTGAAGACGGCAAAA
GTGTTCTCCGTACCCACGGAGATGAACCG	GTCAAACATTTTGAATGGATAGATTATGAGTA
GTGTTCTCCGTACCCACGGAGATGAACCG	TTGTTCCGGCTGGTACCGCTGATTCAGTTCAG
GTGTTCTCCGTACCCACGGAGATGAACCG	CACTTGGAGTTATTGATCGAGAGTGATCAAAA
GTGTTCTCCGTACCCACGGAGATGAACCG	TGACTACATTCTGTCAATGGAGTATTGGGAGA
GTGTTCTCCGTACCCACGGAGATGAACCG	AGCATCAGCAATATCCTTGGGTAGTTCATCAG
GTGTTCTCCGTACCCACGGAGATGAACCG	CCATATCAGACTGAGTAGATACAACAGATAAA
GTGTTCTCCGTACCCACGGAGATGAACCG	GACACAAAGAACAAATATGGCATCGATAACAG
GTGTTCTCCGTACCCACGGAGATGAACCG	TATCAAAGAACATCTGCATGCACTCTTCATAG
GTGTTCTCCGTACCCACGGAGATGAACCG	AGTCACCGGGTAAGACCGGAACGGTAGAAAGA
GTGTTCTCCGTACCCACGGAGATGAACCG	ATCGCGCTATCACATTCGTTTTGAGCCATACC
GTGTTCTCCGTACCCACGGAGATGAACCG	CTGATTTGCTTTCTTTTGCTGGCTCGTCCTTT
GTGTTCTCCGTACCCACGGAGATGAACCG	CCTCGGAAATATACGACGAAATTTACAAGAAA
GTGTTCTCCGTACCCACGGAGATGAACCG	ATAATCACGTTGATACTTACCAGCATCTTTTG
GTGTTCTCCGTACCCACGGAGATGAGCCA

>NZ_CP014038|1|1|73560-75603|PILER-CR
GTGTTCTCCGTACCCACGGAGATGAACCG	TTTGTGTCTGCCTCGATGTCGCTCATCATCTC
GTGTTCTCCGTACCCACGGAGATGAACCG	AAATCGTAGTATAAGTATTCACATTTGCAAAT
GTGTTCTCCGTACCCACGGAGATGAACCG	ACACTTCTTTGTGTTGAGCAGTTCGCCAATGG
GTGTTCTCCGTACCCACGGAGATGAACCG	TAAACGCGCTGATATGGATCGTTTGGTATTGG
GTGTTCTCCGTACCCACGGAGATGAACCG	ATTACAAGCCTGGGACGATGATTATTCACAAG
GTGTTCTCCGTACCCACGGAGATGAACCG	TTTACACCGATTACAAGTCACTCAAAGAAAAA
GTGTTCTCCGTACCCACGGAGATGAACCG	CCTAGATAGTTTGGAGTTTATCGACATGACTG
GTGTTCTCCGTACCCACGGAGATGAACCG	AGACTTATCCCATAGAGCATTTCCAGACTTAA
GTGTTCTCCGTACCCACGGAGATGAACCG	GAAGCAGACAGACGAGCGCACGATGGCGTTAC
GTGTTCTCCGTACCCACGGAGATGAACCG	TCAACGGTTAGATCAGAGTTAGCCTTTCGCAT
GTGTTCTCCGTACCCACGGAGATGAACCG	CGGATCTTGACTTTATGGCTGTAGACAATCCAA
GTGTTCTCCGTACCCACGGAGATGAACCG	GTAATGGTCTGCCTAACATCGTTGATGTTATG
GTGTTCTCCGTACCCACGGAGATGAACCG	GGTGTATTACTTGGTACACACTTACACTTCAC
GTGTTCTCCGTACCCACGGAGATGAACCG	CCAGTAAGCGATAGCGCGCTAGTCCGTGCCAC
GTGTTCTCCGTACCCACGGAGATGAACCG	CGTGACATTTGACGTAACAGCTTTGCCTATGT
GTGTTCTCCGTACCCACGGAGATGAACCG	CGTCCAGCGGCAGGAATGACCACATCTGAGTC
GTGTTCTCCGTACCCACGGAGATGAACCG	TGTGATGTAGGTGTAAACACGACCAAATCAGT
GTGTTCTCCGTACCCACGGAGATGAACCG	CGGTGCTGTAGCAAAATGATGATGTCAGTAACG
GTGTTCTCCGTACCCACGGAGATGAACCG	CAATCAGCAAAAGCATGGTGGTGGATAACAAC
GTGTTCTCCGTACCCACGGAGATGAACCG	CCAACCGTCACGAGTAAATTTATCGCCAGTGT
GTGTTCTCCGTACCCACGGAGATGAACCG	CAATGCAGGCTGGCGACCTGAAGACGGCAAAA
GTGTTCTCCGTACCCACGGAGATGAACCG	GTCAAACATTTTGAATGGATAGATTATGAGTA
GTGTTCTCCGTACCCACGGAGATGAACCG	TTGTTCCGGCTGGTACCGCTGATTCAGTTCAG
GTGTTCTCCGTACCCACGGAGATGAACCG	CACTTGGAGTTATTGATCGAGAGTGATCAAAA
GTGTTCTCCGTACCCACGGAGATGAACCG	TGACTACATTCTGTCAATGGAGTATTGGGAGA
GTGTTCTCCGTACCCACGGAGATGAACCG	AGCATCAGCAATATCCTTGGGTAGTTCATCAG
GTGTTCTCCGTACCCACGGAGATGAACCG	CCATATCAGACTGAGTAGATACAACAGATAAA
GTGTTCTCCGTACCCACGGAGATGAACCG	GACACAAAGAACAAATATGGCATCGATAACAG
GTGTTCTCCGTACCCACGGAGATGAACCG	TATCAAAGAACATCTGCATGCACTCTTCATAG
GTGTTCTCCGTACCCACGGAGATGAACCG	AGTCACCGGGTAAGACCGGAACGGTAGAAAGA
GTGTTCTCCGTACCCACGGAGATGAACCG	ATCGCGCTATCACATTCGTTTTGAGCCATACC
GTGTTCTCCGTACCCACGGAGATGAACCG	CTGATTTGCTTTCTTTTGCTGGCTCGTCCTTT
GTGTTCTCCGTACCCACGGAGATGAACCG	CCTCGGAAATATACGACGAAATTTACAAGAAA
GTGTTCTCCGTACCCACGGAGATGAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014038.2\|WP_061064977.1\|76486_77047_+\|type-III-secretion-protein	unknown	unknown	gnl\|CDD\|274190
NZ_CP014038.2\|WP_061064976.1\|76241_76487_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014038.2\|WP_061064975.1\|73001_73286_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP014038.2\|WP_061065880.1\|78447_79401_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014038.2\|WP_081097924.1\|80757_81843_+\|type-III-secretion-system-translocon-subunit-SctE	unknown	unknown	gnl\|CDD\|368176
NZ_CP014038.2\|WP_061064983.1\|82482_84249_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014038.2\|WP_061065879.1\|71411_72077_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|187858
NZ_CP014038.2\|WP_061064972.1\|69604_70639_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP014038.2\|WP_123947165.1\|79583_80621_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014038.2\|WP_061064967.1\|63066_63651_+\|DUF2913-family-protein	unknown	unknown	gnl\|CDD\|371392
NZ_CP014038.2\|WP_061064985.1\|84970_86860_+\|FHIPEP-family-type-III-secretion-protein	unknown	unknown	gnl\|CDD\|376386
NZ_CP014038.2\|WP_061064974.1\|72076_72997_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP014038.2\|WP_061064973.1\|70648_71407_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP014038.2\|WP_061064984.1\|84377_84974_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014038.2\|WP_061064982.1\|81859_82450_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014038.2\|WP_061064971.1\|69007_69565_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP014038.2\|WP_061064969.1\|64696_67396_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP014038.2\|WP_061064968.1\|64011_64248_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225684
NZ_CP014038.2\|WP_061064979.1\|77535_78024_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274197
NZ_CP014038.2\|WP_061064970.1\|67407_69015_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860

Protein	Function_ID	Function_description	E-value
NZ_CP014038.2\|WP_061064977.1\|76486_77047_+\|type-III-secretion-protein	gnl\|CDD\|274190	TIGR02544, YOP_proteins_translocation_lipoprotein, type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0.000554711
NZ_CP014038.2\|WP_061064975.1\|73001_73286_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.09299e-62
NZ_CP014038.2\|WP_061065879.1\|71411_72077_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	3.56299e-64
NZ_CP014038.2\|WP_061064972.1\|69604_70639_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.02557e-123
NZ_CP014038.2\|WP_081097924.1\|80757_81843_+\|type-III-secretion-system-translocon-subunit-SctE	gnl\|CDD\|368176	pfam04888, SseC, Secretion system effector C (SseC) like family. SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella. All these proteins are secreted by the type III secretion system. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.	0.00154478
NZ_CP014038.2\|WP_061064967.1\|63066_63651_+\|DUF2913-family-protein	gnl\|CDD\|371392	pfam11140, DUF2913, Protein of unknown function (DUF2913). This family of proteins with unknown function appear to be restricted to Gammaproteobacteria.	2.85325e-17
NZ_CP014038.2\|WP_061064985.1\|84970_86860_+\|FHIPEP-family-type-III-secretion-protein	gnl\|CDD\|376386	pfam00771, FHIPEP, FHIPEP family.	2.48088e-113
NZ_CP014038.2\|WP_061064974.1\|72076_72997_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.73956e-147
NZ_CP014038.2\|WP_061064973.1\|70648_71407_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.78638e-50
NZ_CP014038.2\|WP_061064971.1\|69007_69565_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	4.55207e-23
NZ_CP014038.2\|WP_061064969.1\|64696_67396_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.21679e-133
NZ_CP014038.2\|WP_061064968.1\|64011_64248_-\|hypothetical-protein	gnl\|CDD\|225684	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism].	9.4704e-15
NZ_CP014038.2\|WP_061064979.1\|77535_78024_+\|hypothetical-protein	gnl\|CDD\|274197	TIGR02552, Low_calcium_response_locus_protein_H, type III secretion low calcium response chaperone LcrH/SycD. Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.	0.000328441
NZ_CP014038.2\|WP_061064970.1\|67407_69015_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	1.94192e-146

>NZ_CP014038.2|WP_061064975.1|73001_73286_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVIVTEAVPPRLRGRLAVWLLEIRAGVYVGDVSCKIREMIWEQINVLADDGNVVMAWGTNTESGFDFQTYGKNRREPIDLDGLRLVKFQPQ
>NZ_CP014038.2|WP_061064974.1|72076_72997_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MAFIPLKPIPIKDRHSMIFIAMGRIDVRDGAFVVIDKVNGERMHIPVGSTTCLLLEPGTRISHAAIKLAAMTGTLLIWVGEAGVRVYSVGQPGGARSDRLLYQAKLALDADLRLKVVRKMFELRFGEEAPSRRSVDQLRGIEGARVRKTYQKLAQQYGVEWQGRRYDPKDWKKGDIINQCISAATACLYGVTEAAILAAGYAPAIGFLHTGKPLSFVYDIADIIKFETVVPVAFKIASYQPLSPDRQVRQACREEFRKQHTLKKLIPLIEEVLSAGDITPPEPYVDAQPPAIPVPIAVGDFGHRSK
>NZ_CP014038.2|WP_061065879.1|71411_72077_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSKITLAPSATLAEHLLMLQRNDAYAAHQLLWQLFHGESERQFIYRQEFQSNGLPIFWVLSLVAPEATHPQWLVQTKPFMPKLQKGQRLAFKLRANPTTWNNTTKKRHDVMMHAKYQAKERGIDNVQLAHHMQQAAQQWLCAPHRLMQWGISLETAPDIESYTQHHSVKKSAKNPIRFSSVDYQGILTIQEPEVFLAQYARGFGRSKSLGCGLMLIRGV
>NZ_CP014038.2|WP_061064973.1|70648_71407_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MRPYLVFRLYGPMASWGQPAVGGERHTGMMPSRSALLGLLGAALGIKRENDAQLENLRQSVLFGIKQVTSGALLRDYHTTQVAANNNKIHYHTRKQELEMGKLATVLSSRDYRCDGLWIIAVSLTKQSAFTLGQLQQALLKPTYPLCLGRKSCPPALPLMPKILTSCSLKQALDSPFPAITNSNKSDQYWLSGGSKHSVTTYYWQGDKEWLDDLGENVVITTQPWDEPVSRARWQFASRAMHQVTLPISKDE
>NZ_CP014038.2|WP_061064972.1|69604_70639_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSQFIQLHTLTSYAPSNLNRDDLGRPKTAKMGGCERLRVSSQSLKRHWRTSALFEQAMNGKLGTRTKRFGNTVYDALTEQNVKEKVALEWAGAIAGQFGKLKKGSLEIEQLAHISPTEQDLALSLTTIIAKENRAPIVDELKAIKSKQTAVDIALFGRMLASSPEFNVEAACQVAHAISVHQVTVEEDYFTAVDDLNDGKTESGSAHIGEAGFAAALFYHYICINKAQLIENLGGDEELANAAIAALTEAAVKVSPAGKQNSFASRAYASYVMAEKGEQQPRSLSVAFLKPINEQDMGSAAIDALSKQAINFDQVYGVCADSRYEVNAMTGEGSFAKLCQFVTE
>NZ_CP014038.2|WP_061064971.1|69007_69565_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNTTEGRILMRWWQSLMLSESELQKVDEKLRPAPSGYKSRLKRAESIDAAMMQDAFRMLWFKLPEPSVANADDMERWAVIAMTLMFVSPGYQEPLAKAAGKKRENSDKSVVSEARFARLQAARTPDELLRILRRLLQLVKGKTDPLALANNIEQWFNEYQAPHPRQAKHRISIQWAMDYHRAAK
>NZ_CP014038.2|WP_061064970.1|67407_69015_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLLHASWLPFRCRNGEQVWRPITAIVEPDIMDFALPRADFQGAAYQFSIGILQTIFAPENKKEWLRYFEQAPTKETLVLALKAIEHAFELNGDGPLFMQDRDPLVSQKTSPVSGLLIDAPGENGLKNNTDFFIKRGVGEVMSPAMAALALFTLQINAPSGGVGHRVGLRGGGPLTTLIVPANETSSLWQKLWLNVINRQYWDYDAPNFHDGSVFPWLGATRESSKKGDDIYPTSEGIHPLHMYWAMPRRIRLVIDKEAATCSISGEPSERSVRGYRTKNYGNNYVGNWDPHPFTPYTWNPKKPAEDHLSQKGQPGGITYKTWDILTLTDQSKSGHVCARVVDHYNAIARRQLPENPQVWVFGYDMDNMKPRGWYCTKLPFLTVNDEHRDGLLTEVRRLQELSNGALYQTRSQIKAAWFEKPGDVKGDTSFIDLSFWQWTQGVFYETVSQLATNLNQEKAPLTPEQALYFRRTLQGACELLFDSYALDDDLGEVRSMAKKMEARRYLMGWLFGGKPIKEFNHNYQLEDIKEKSNA
>NZ_CP014038.2|WP_061064969.1|64696_67396_+|CRISPR-associated-helicase/endonuclease-Cas3
MSYYDYWGKKDDASTVQYHLLPYHCLDVAAVVKQLLLENQELANDLAQLLELPTEQFMNVMAFLVSLHDLGKFSSSFQAIDPCNTLFRASQYDVKNARHDRLGAFFWEQVSIDVLELLVEQYDDEDEALERLEVLITVVLGHHGYPISLDKPNALKRYTELRNVRDVKEFIDEVYALSVPKLSKLPALERLRQTSWYLAGIVVIADWIGSNQRYFVYCDTKVPLQEYWRSAQEKASNALIETGFSSRARPSEFKSIQEHFGFEPTPLQQWAEQVSLADSPQLFILEDVTGAGKTEAALALTHRLMAQGVADGFYFGLPTMATSNAMFQRIMSHYHDMYQHDTKTIMPSLVLAQSSSALSDPFQAAKSASCQREHDYYTDEYTATAICNAWLADSRKAALLASVGVGTIDQALLAILPKHHQALRLLGLHRKVLIFDEVHAADEYMFILLESLLEQHLHHGGSVILLTATLSTEQRQKLVNIWLRAGQLPPSTLTHTGVTDFPLTTQVSLTPSQPVIETPLMSRDDVCRQVMVSQIHDVSDCIQTMVNAVKAGQCAVWIRNSVDDARSAYDDVKLALESAGYACSQEQLMLFHSRFTLSDRKRIEKQVLSCLGKKTENGEVISGEMRKGKVLIATQVFQESLDVDADVIISDLCPIDDLIQRVGRLHRHTRDINGQFHHGIDQRATPILYLHAPKWEAEPNVGWLSLQFRNTEYVYRSPGRLWLAQRKLIELGAIRMPDEARELIEAVYSQDAQAEIPHTLLKKEEDLIAEERLKNASAKSQRIEFKYGYSENSQKYWTEDQYDISTRFCERETTQVVVLRRAESGELTLWCSEQEHGVTLSTLTVAKLKYADHLKPLTEQEHAELLRRFPPLKYRLPWCPEDDPQFGYNATQGFYQRSM
>NZ_CP014038.2|WP_061064968.1|64011_64248_-|hypothetical-protein
MKILPLAAGSMKKVCHMAFDDIPKALHKESIDILASLGFCTILTHGDKITALISLEQIKETITLVNERMTVPPGGGIN
>NZ_CP014038.2|WP_061064967.1|63066_63651_+|DUF2913-family-protein
MQIKRDFDYYYNLHHVVTHSLLHLLCKVSATERHVPVTTRNDILIKFLKPKLTDKSLANVKKDIKLMLNVARRKGGNLEVKLYELNSQANKTQLVGAEKLYNLLVYLYDAEGIESRLFDEGMEAEAGILYMLDEQIEYGFDESHKQVAPLSMLIQLERAPELIDMINQHGFFVAEMKEWNLDTHQAHILVHPVK
>NZ_CP014038.2|WP_061064976.1|76241_76487_+|hypothetical-protein
MQSFGIEQIQPSVVEDTFNKVGEGFQDILEQMERINNNKSITAADTLVLQQSVFHYTMFQEIVTKLTSKSANAINEVMKAQ
>NZ_CP014038.2|WP_061064977.1|76486_77047_+|type-III-secretion-protein
MRHWVWTVLVLLLGCSDHGGTQIGKFESSDMANKVIVLLARYKVKAVLNLKKDSYLVSVDDSMEVKAREILTRFNAYFQKEDLNELLESKFASLSKLEVVKGNLLESREIYNKLSVIPGVLRANVVVTGDKKKRVSVLVMSFNEINISKKHSIERFLKGLVNESDKLTVSYFVESVHDISGNDGQN
>NZ_CP014038.2|WP_061064979.1|77535_78024_+|hypothetical-protein
MKSKSSNLDELDEAFYALLERGKVEKEIATMRRSNRVTIPQLKAVFDMGVDFYNQFQFKEAEIVFSAYSALNPYDHRGTGCLAAIYLENKQFQKALDMLNILKTFPTNELDETILNIALCHYKLEQKLEAASMLLIVRPDGLNEYYGQRYRYLEQQLSPYFS
>NZ_CP014038.2|WP_061065880.1|78447_79401_+|hypothetical-protein
MVSSNPEDSIALALSASIEAYGKQLTFIQGWTNGGLAMFESAERLMFEDLKDAVERGETSGFVLEDLFVLAAIDFVAHGYGGDPDMKGDIMHFLESTGSGAHGVHEDWNNNKFADHTPSLYQYMLDNSPISSFCFEILTFIDKECGGSDALAEQYKAHYNDNGGYIGNFGYPDSNGLSPMLRLALMAEYLAMNPQTEQVTINLFLTGSISEIDTFISSNTSDDSAITFICENDGYMGDHGWRLCSDGDGGYILDWYGIGLDEIYFEDLYSNFPPRDLTEEEIEEVNRIGDQVKILQQTLLYWLKICRDEQLAMTRNI
>NZ_CP014038.2|WP_123947165.1|79583_80621_+|hypothetical-protein
MANTLELKVEFAKTKGTTDVLMTALLHQKNIVVQMLSSNPEDAIALSLSASIEAYGTRLEIIEGWTNGGVEMFESTLWFMLKDIEADGVISPGEMEDLFQLALLEVMAHPEKYDLEGWYKKNKEDISHILESTGSGSHGLHESNYDSPKKLAHISESLYEGILKNAVIPQGSLLDCVIQDLASGGGIGMLSDQIEYNYYSDYGWWANGTAGTLSPTLRLFLLSTLLAHNPQMSQQDVELVLTENIGGINTYVASIFGKDSSGQPYTALSFLCENTQWQIQVNDPMDGCNQIDWRGDGIEDDDLIDLYSNFPPRELTEEEIEEVNRIGDQVKMLQQTLLSAKHLKS
>NZ_CP014038.2|WP_081097924.1|80757_81843_+|type-III-secretion-system-translocon-subunit-SctE
MNTITATSYVHSVDEEPSKVTSQATQSVSSDMVVPGQPLPGSSVSLSGLWRLVEDQMKEVANAVSGTGKENSKAKKSLIEVQKQSQISQLEERENDINEQQKAQKKKSFWGKFAMALGFIAAIVVAPFNPAMAAVMVVTMVASIVVPKVADEIMKAAGVPEETRAKVTMGLQLAIGLASMVLSFNPAKIVTKLGQATSKMASKVASTAANIASKAPVSSVTSMVSKIGELKNIVMSMKAMRPLCKMTQKASKMLDDIAEKLKDFMVNSDKVSLRASRMSQVAEVGSTTASVVSAGYGIKSADIMKDLEINQAKQEELETRIQQIINMLNQAMRAISHAFESMFKTNTDHRDFNAKMVSIHM
>NZ_CP014038.2|WP_061064982.1|81859_82450_+|hypothetical-protein
MATNNVNMPSTLIDVQSISISPPIAGPSQELQKQLEVVSQTFKGADQFVLPDHHMDELVKVSMAVARGDFSTVTEHLTQLSAPSKSTGETSTVTAQTRGSHSSVTMAELLALMTEIIESSHELRSQVMQNRIYEASATCDLAVALAADKCHDAQTKFGITLAASLITMGVSTFATVRMAQPKTLQDKHVRSMSGDG
>NZ_CP014038.2|WP_061064983.1|82482_84249_+|hypothetical-protein
MAMYGGHEFLTGGTSPHETESETITPEPEQPEASTCHTPPSPPSHDQPDELDNEEEEDTFHRNDIPKGPSLSHDKRGNFTFAPVYTPNITINEAPNITINGNLYFMQGGETMMPSQTGSTKENVTESDRVRQELNPNKSKQLQITRIVKMTPEQVSIAVKATTDESADLIAQTLGATGSDTRHVTFNNGVQAIVTGLPTHAPSVHHRGEGFTALNEAGLAFSQASYLNEKAKGEEVKVGETHSWHIGEGDKWLLSLKLDNLKLVDDDLQTQGTRQVTTKSVHNRERNIEHKEKGNVQQTNTLRMGGAIREETHELSTLGGRWGRKDRWEGANLKSKVENVASVFLSPGSAQAISGSHGNLTAGIFNNTTSFNLKKNEKNDHIESSMFLQTEDCENTRTNTNRKRSMLDVYGDTGKEHVVSDSRKYAKSEVYSEDPATFTSRGDTQKPPYALSKPTQTVSDNFKQILKETLPRASTRTTEDVRNDAFEKVFDHSGRWVRVGSRWVSNPELKVGNEASVTLSPGSAQAIYGRHSNRSTGVFMNMSGSTLKKTENQPKSKGEQATRRLHVWGHRAFPFVNMNNLVSDVKKA
>NZ_CP014038.2|WP_061064984.1|84377_84974_+|hypothetical-protein
MYIEIESAQRVIPQICFVKNRESNVIKQSEILLYKKAQTLLDSLEMRVDEYQNILEQEVHRLLEEKEQTLNAHIEQAFSVAIKNWNAKQNQWFAEAEEKLSTLLIEQRQQLLGLREELKCAVVRKTQAQLTKVGQDETLIEYLVDILHTQIDDANRCLKVERSLSDSGVILSIEDDERIICINTSELIAQLRESLDAL
>NZ_CP014038.2|WP_061064985.1|84970_86860_+|FHIPEP-family-type-III-secretion-protein
MMKSLTVRGFLFNPSSVVLALLLPTIILFTLPGEVIDAFILLSFISSALLMIIMLENDEPLKVTFLPTVVLLLTTFRLLLSIATTRNIIANEDVGDVIETVGQFVMGGNLVSGLLIFVIITIVQFLVVTKGGERVAEVGARFSLDALPGRQMTIDGDLKSGLITGEQAQTLRANLSTENKLFGSLDGAMKFVKGDSIAGILISLVNLFGGIYVGINQFELSLSDSISRFSVLTIGDGLVSQIPSLLLSMACGVYLTRIKGAEEESRPFISQLMAQIGSFWKSLLMIASVVFILGLLNGELLYVCFPLAAICALLAYVLRRQQLVPDGATSFGEKGSGLFESLKFVVRQEKHQGAIRQSLKSLEEALWGQVLGTPAMIVDETSECDLEVYIANICMYRFHHKTADEIVEIMNDGLFIRDDNVVENLSEIVSYFLRRRLIDKYNLQFTNNVVEGLAQQSEIMKGEIESAIGLNRVHDVLKEMLRSPEFYLDRMSFFEGLIYWSRIENDPKNWLNRIRVQARYEITSRLLNSTNQIHVVLLSPELTEKIEWLVSGEVEDINLMVVVQKKLRQELLRLTTLYRSLPTLVVNDSEVNMVKSFFYQVVSTLPVCGHGDIADSSCVATSDVIDIAV

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Crispr_ID: NZ_CP014038_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014038_2

1499927-1500166

Orphan

Consensus_repeat	Method
CCTCCTTAGCTCAGTAGGTAGAGCAACGGACTGATAATCCGC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP014038_2

>merge|NZ_CP014038|2|1499927-1500166|PILER-CR
CTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATTCTTTTGCCTCGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTGTCGGTGGTTCGATTCCGCCTCGAGGCACCATATTTGGTGCATTTGCTTAAAGCAAGACACAAAACAGAATAGTTCCTCCTTAGCTCAGTTGGTAGAGCGACGGACTGTTAATCCGC

>NZ_CP014038|2|2|1499927-1500166|PILER-CR
CTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGT	CACCAGTTCGATTCCGGTAGTCGGCACCATTCTTTTGCCTCGAT
AGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTGTCGG	TGGTTCGATTCCGCCTCGAGGCACCATATTTGGTGCATTTGCTTAAAGCAAGACACAAAACAGAATAGTTCCTCCTT
AGCTCAGTTGGTAGAGCGACGGACTGTTAATCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014038.2\|WP_061065395.1\|1517559_1517865_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99906
NZ_CP014038.2\|WP_009698791.1\|1513671_1514427_-\|chitin-disaccharide-deacetylase	unknown	unknown	gnl\|CDD\|235007
NZ_CP014038.2\|WP_050937295.1\|1496754_1497831_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|182805
NZ_CP014038.2\|WP_009698790.1\|1512570_1513569_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP014038.2\|WP_005448805.1\|1518269_1518719_+\|type-III-secretion-system-chaperone	unknown	unknown	gnl\|CDD\|341100
NZ_CP014038.2\|WP_061065393.1\|1503015_1504452_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143421
NZ_CP014038.2\|WP_005449658.1\|1500491_1502117_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP014038.2\|WP_005425804.1\|1491234_1491666_+\|DUF4426-domain-containing-protein	unknown	unknown	gnl\|CDD\|379616
NZ_CP014038.2\|WP_061065394.1\|1511174_1512425_-\|HD-GYP-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NZ_CP014038.2\|WP_017189094.1\|1491771_1492374_+\|XTP/dITP-diphosphatase	unknown	unknown	gnl\|CDD\|234648
NZ_CP014038.2\|WP_061065392.1\|1492392_1493565_+\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|235550
NZ_CP014038.2\|WP_005425792.1\|1497850_1498123_+\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NZ_CP014038.2\|WP_005425798.1\|1494791_1495820_-\|DNA-methylase	unknown	unknown	gnl\|CDD\|223971
NZ_CP014038.2\|WP_005449665.1\|1495831_1496551_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP014038.2\|WP_009697576.1\|1498205_1499345_+\|membrane-bound-lytic-murein-transglycosylase-MltC	unknown	unknown	gnl\|CDD\|183271
NZ_CP014038.2\|WP_017187878.1\|1514444_1515767_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432
NZ_CP014038.2\|WP_005448800.1\|1515777_1516089_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|376749
NZ_CP014038.2\|WP_009698793.1\|1516136_1517471_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_CP014038.2\|WP_005425805.1\|1490884_1491175_+\|YggU-family-protein	unknown	unknown	gnl\|CDD\|179931
NZ_CP014038.2\|WP_005425799.1\|1493768_1494689_-\|glutaminase-B	unknown	unknown	gnl\|CDD\|234880

Protein	Function_ID	Function_description	E-value
NZ_CP014038.2\|WP_061065395.1\|1517559_1517865_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.47976e-45
NZ_CP014038.2\|WP_009698791.1\|1513671_1514427_-\|chitin-disaccharide-deacetylase	gnl\|CDD\|235007	PRK02134, PRK02134, chitin disaccharide deacetylase.	1.23831e-120
NZ_CP014038.2\|WP_050937295.1\|1496754_1497831_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|182805	PRK10880, PRK10880, adenine DNA glycosylase.	0
NZ_CP014038.2\|WP_009698790.1\|1512570_1513569_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.72582e-111
NZ_CP014038.2\|WP_005448805.1\|1518269_1518719_+\|type-III-secretion-system-chaperone	gnl\|CDD\|341100	cd16364, T3SC_I_like, class I type III secretion system (T3SS) chaperones and similar proteins. This family contains class I type III secretion system (T3SS) chaperones mainly found in Gram-negative bacteria such as Pseudomonas, Yersinia, Salmonella, Escherichia and Erwinia, among others. A wide variety of these bacterial pathogens and symbionts require a T3SS to inject eukaryotic host cells with effector proteins important for suppressing host defenses and establishing infection. Many of these effector proteins interact with specific type III secretion chaperones prior to secretion. These T3SS chaperones have been classified as class I type III secretion chaperones (T3SC), which are small structurally conserved dimers that interact specifically with T3SS effector proteins. Class I T3SC consists of two subclasses: IA and IB. Class IA T3SC binds a single effector, whereas class IB T3SC binds to several effectors. Class IA and Class IB T3SCs typically exhibit little sequence similarities, but share a common overall heart-shaped structure fold (alpha-beta-beta-beta-alpha-beta-beta-alpha) and features, such as a small size, an acidic pI and an amphipathic C-terminal alpha-helix. Chaperone protein CesT serves a chaperone function for the enteropathogenic Escherichia coli (EPEC) translocated intimin receptor (Tir) protein, which confers upon EPEC the ability to alter host cell morphology following intimate bacterial attachment. In Pseudomonas aeruginosa, chaperone ExsC binds small secreted protein ExsE as well as the non-secreted anti-activator protein ExsD; it relieves repression of the transcriptional activator ExsA (which activates expression of T3SS genes) by ExsD. P. aeruginosa SpcU binds the cytotoxin ExoU, which is a broad-specificity phospholipase A2 (PLA2) and lysophospholipase, and maintains the N-terminus of ExoU in an unfolded state which is required for secretion. Salmonella enterica chaperone SicP forms a complex with effector protein SptP at an early stage of its secretion process in order to avoid premature degradation, while chaperone SigE binds to effector SigD, which, upon translocation into the host cell, preferentially dephosphorylates specific inositol phospholipids that are thought to be crucial for subsequent activation of the host cell Ser-Thr kinase Akt. This family also includes Yersinia chaperone/escortee pairs SycE/YopE, SycH/YopH, SycT/YopT and SycN+YscB/YopN, all of which bind to specific Yersinia outer proteins (Yops). Also included are several DspF and related sequences from several plant pathogenic bacteria. The "disease-specific" (dsp) region next to the hrp gene cluster of Erwinia amylovora is required for pathogenicity but not for elicitation of the hypersensitive reaction. In addition, a group of proteins including Escherichia coli YbjN, Erwinia amylovora AmyR, and their homologs, are included in this family. They share a class I T3SC-like fold with T3SS chaperone proteins but appear to function independently of the T3SS.	8.74163e-21
NZ_CP014038.2\|WP_061065393.1\|1503015_1504452_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143421	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.	0
NZ_CP014038.2\|WP_005449658.1\|1500491_1502117_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	2.15682e-61
NZ_CP014038.2\|WP_005425804.1\|1491234_1491666_+\|DUF4426-domain-containing-protein	gnl\|CDD\|379616	pfam14467, DUF4426, Domain of unknown function (DUF4426). Members of this entry are found mostly in g-proteobacteria, especially in Vibrio. Strangely enough, there seems to be one eukaryotic homolog in Nematostella vectensis (NEMVEDRAFT_v1g226006), where the PA0388-like domain is fused with a domain homogous to the Methionine biosynthesis protein MetW (see below). In several Pseudomonas species, but also in Vibrio vulnificus and Azotobacter vinelandii PA0388 homologs are genomic neighbors of Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) and Methionine biosynthesis protein MetW. On the other hand, in most Vibrio species it appears as a part of a conserved operon involved in possible response to stress.	2.05857e-68
NZ_CP014038.2\|WP_061065394.1\|1511174_1512425_-\|HD-GYP-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	4.34218e-72
NZ_CP014038.2\|WP_017189094.1\|1491771_1492374_+\|XTP/dITP-diphosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	9.10988e-122
NZ_CP014038.2\|WP_061065392.1\|1492392_1493565_+\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|235550	PRK05660, PRK05660, radical SAM family heme chaperone HemW.	0
NZ_CP014038.2\|WP_005425792.1\|1497850_1498123_+\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	9.88866e-59
NZ_CP014038.2\|WP_005425798.1\|1494791_1495820_-\|DNA-methylase	gnl\|CDD\|223971	COG1041, COG1041, Predicted DNA modification methylase [DNA replication, recombination, and repair].	1.72952e-08
NZ_CP014038.2\|WP_005449665.1\|1495831_1496551_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	1.32707e-107
NZ_CP014038.2\|WP_009697576.1\|1498205_1499345_+\|membrane-bound-lytic-murein-transglycosylase-MltC	gnl\|CDD\|183271	PRK11671, mltC, membrane-bound lytic murein transglycosylase MltC.	5.43341e-149
NZ_CP014038.2\|WP_017187878.1\|1514444_1515767_-\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NZ_CP014038.2\|WP_005448800.1\|1515777_1516089_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|376749	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.	7.43721e-36
NZ_CP014038.2\|WP_009698793.1\|1516136_1517471_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	2.3877e-153
NZ_CP014038.2\|WP_005425805.1\|1490884_1491175_+\|YggU-family-protein	gnl\|CDD\|179931	PRK05090, PRK05090, hypothetical protein; Validated.	1.0803e-59
NZ_CP014038.2\|WP_005425799.1\|1493768_1494689_-\|glutaminase-B	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0

>NZ_CP014038.2|WP_009697576.1|1498205_1499345_+|membrane-bound-lytic-murein-transglycosylase-MltC
MKKIAFIATALLMAGCSREFVEKIYDVDYEPTNRFANNLAELPGQFEKDTDALDALINSFSGNIKKRWGQREVKFAGKSNYVKYIDNYLSRAEVDFQKGVITIETVSPTEPQKHLKNAIITTLLTPDDPANVDLFSSKEIKLEGQPFLYKQVVDQDKKPIQWSWRANRFADYLIANQVKTKDVDFKKAYYVEIPMVEDHFSQRSYQYADIVRRASKRYDIPEDLIYAIIKTESSFNPYAVSWANAYGLMQVVPKTAGRDVFKLVKNRSGQPSPEYLFNPENNIDTGTAYFYILKNRYLKDVQHPTSLEYSMISAYNGGTGGVLNTFHRTDRKRAMRDLNSLQPNQVYWALTKKHPNAEARRYLEKVTNFKKEFNSGHTL
>NZ_CP014038.2|WP_005425792.1|1497850_1498123_+|oxidative-damage-protection-protein
MSRTVFCARLKKEGEGLDFQLYPGELGKRIFDNISKEAWAQWQHKQTMLINEKKLNMMDPEHRKQLETEMVNFLFEGKDVHIEGYTPPSE
>NZ_CP014038.2|WP_050937295.1|1496754_1497831_+|A/G-specific-adenine-glycosylase
MTPFASAILEWYDAYGRKDLPWQQNKTAYSVWLSEIMLQQTQVTTVIPYYQRFLERFPTVVDLANAEQDEVLHLWTGLGYYARARNLHKAAKEVAHKYNGEFPLDLEQMNALPGIGRSTAAAVLSSVYKQPHAILDGNVKRTLSRCFAVDGWPGQKKVENQLWEIAETHTPQTDVDKYNQAMMDMGAMMCTRSKPKCTLCPVNELCIAKKQGNVLDYPGKKPKKDKPVKQTRFVMLHHKNGDSHEVWLEQRPQTGIWGGLFCFPQTEHIDVESDIELLLEQRGIQADDIKRQETLITFRHTFSHYHLDITPILIDLSKQPNVVMEGNKGLWYNLSKPEEVGLAAPVKLLLEALPHELR
>NZ_CP014038.2|WP_005449665.1|1495831_1496551_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MSEVTTNEYNEDGKMIRKIRSFVRREGRLTKGQENAMNECWPTMGIDYKAELLDWKEVFGNDNPVVLEIGFGMGASLVEMAKNAPEKNFIGIEVHSPGVGACLADAREAGITNLRVMCHDAVEVFEHMIPNGSLATLQLFFPDPWHKKRHHKRRIVQLEFAEMVRQKLILNEGIFHMATDWENYAEHMIEIMNQAPGFENIAEEGDFIPRPEERPLTKFEARGHRLGHGVWDIKFKRTA
>NZ_CP014038.2|WP_005425798.1|1494791_1495820_-|DNA-methylase
MYHYAILANPGHNRIYFDSAMTIACSELKAILASEGVEVTEIGNKDVGLPAALVFSCETELSEAQAGKIAASSIYYALFEVREDGLLRPIQAPAFNTFPESMSQILRYTGKTNEQFTRLMVNLGVSAANTGSAQLTLMDPMCGKGTTLFEGLIHGLNVVGVEINQKWVQEIQTFIVKFMKNGRFKHKVSKEKRTSGGKKVADGFVVEAAADKDDYNKGNLQTMKLYSADTRIADQVVKKNSVDVMVSDLPYGVQHGSKNAKDSKLNRSPLELLKEALPAWKVVLKKQGSVVLSFNEFTLKWKDVAALFEEQGWKVLSEEPYIGYLHRVDQSINRNIIVAIKP
>NZ_CP014038.2|WP_005425799.1|1493768_1494689_-|glutaminase-B
MKPTAQILTDILAEVRPLIGQGKVADYIPALAKVPNTKLGIAVYTNEGEVIKAGDAEESFSIQSISKALSLTLAMCLYKQEEIWCRVGKEPSGQAFNSMIQLEMEQGIPRNPFINAGAIVVADLLQSRLSAPRQRLLEFARQLSGDTHIVYDKVVAASEMMHGDRNAAIAYLMRSFGNFENEVIPVLQNYFHACALKMSCVDLAKTFSYLANKGTSVQTGKPVVSPTQTKQLNALLATCGLYDGAGEFAYRVGMPGKSGVGGGIIAVVPGEMTIAVWSPELDASGNSLAGTKALELLAERIGRSIF
>NZ_CP014038.2|WP_061065392.1|1492392_1493565_+|radical-SAM-family-heme-chaperone-HemW
MLTPPALSLYVHIPWCVQKCPYCDFNSHALKAEIPEEEYINALLEDLDTDIEKYRLNEAPRPLHSIFIGGGTPSLISAEGIERLLKGIEARIPFKPEIEITMEANPGTIEAERFVGYRKAGVTRISIGVQSFEQQKLERLGRIHGQDEAVNAAKLAHKIGLNSFNLDLMHGLPDQSIEQALADLDKAIELAPPHLSWYQLTIEPNTMFYYKPPTLPDDDDLWDIFEQGHEKLAAAGYVQYEISGYSKPGYQCQHNLNYWRFGDYLGIGCGSHGKLSFADGRIVRTTKVKHPRGYLMAYQNMVKPYLDSEQLVADEDRPFEFFMNRFRLMEACPKQDYTDTTGLPLSSIQETIDWALEMGYLSETETHWQITEKGKLFLNDLLEAFMAEEE
>NZ_CP014038.2|WP_017189094.1|1491771_1492374_+|XTP/dITP-diphosphatase
MKKIVLATGNQGKVREMADLLSDFGFEVLAQSEFNVSEVAETGTTFIENAIIKARHAAQETGLPAIADDSGLEVDFLKGAPGIYSARYAGEKASDLENLEKLLKAMEGVPEAERTARFHCVLVLMRHENDPTPIVCHGKWEGRILTEAHGENGFGYDPVFFVPEDNCASAELEPARKKQLSHRGKALKSLFAQLSEQVSQ
>NZ_CP014038.2|WP_005425804.1|1491234_1491666_+|DUF4426-domain-containing-protein
MSKWITALLISLLSLPSMAGQFKTMKDIEVHYIAFNSTFLTPKIARSYDIKRNGYNAVLNISVLDSASLGKPAVEAKISGQAKNLIGQTQKLTFREVKEGDAIYYLAELGITNEETFTFDIDVKAGNKGSGKLKFTQKFYVEE
>NZ_CP014038.2|WP_005425805.1|1490884_1491175_+|YggU-family-protein
MSEAVWHDGEDVVLRLYIQPKASRDKIVGLHGEELKIAITAPPVDGKANAHLTKFLAKQFKVAKGLVHIEKGELGRHKQIRIESPVQIPTEIKAII
>NZ_CP014038.2|WP_005449658.1|1500491_1502117_+|methyl-accepting-chemotaxis-protein
MKLKTQAYLLSAIILIALLALTATGLWTLRVASNLDNKARVTELFKSAYSILTEVEKMAVEGKMPEDEAKALATRLLRNNIYKDNEYVYVADENMIFVAAPLDPQLHGTSFHDFRDGDGNSVGQLILDVLGRKTGQIVEYTWTQKLPDGTIEEKHSIAEKTPHWNWVVGTGIGFNEVNARFWSTAQWQLALCLAIAGAILGGLIISIRKMLNLLGGEPNDVREAVQAVAQGDIQTSFEYTAPKDSIYGAVQEMSQSLAKMVTNLDESMHALRSELSAVESRSNSIADLTMSQQQSTAMIATAMTEMASSANHVASSASDTAQNTDEADKQSQHTQSLIHSTVDNIQGLATQLNTASKAVADLDQDVNSIVKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQDSTKEIQQMISNLQEGSRNAIHTMEICAETSESTVTESMNASEALQQIVTALESITAMSQQIATAAAEQTQVSDDIAHRINLIEESGSQLNTVVTESQSSTQTLASLADELEGWVNKFSVKH
>NZ_CP014038.2|WP_061065393.1|1503015_1504452_-|NAD-dependent-succinate-semialdehyde-dehydrogenase
MMQQIQSETLRVLFESLSSQDGIAVINPATEQELIRLKPSSLDELDVQIETCKAAQVEWEKLSAKVRSASLKKWFQLLVEHTEDIANIITLEQGKPLSESRGEVAYGASFVEWFAEEAKRAYGEVIPSPAVDRRLSTIKQPVGVCAAITPWNFPIAMITRKAAPALAAGCGMIIKPSELTPLTALAVVELAHQAGIPKALLSTVVSEQAAEFGLVLSTDPRIKKISFTGSTRVGKILMKQASDTVKAASMELGGNAPFIVFDDADLEAAANGLIASKFRNAGQTCVCTNRLYVHQNVKEAFLTKLLDKVTSLTVGNGLEKNTTLGPVITMASKHRLEAVIDQAVQEGATMLNLPQKRSGRFMEPVILDNVEQGMAIVQQELFGPVLPVISFDDDEQVLSMANDTEYGLACYFYTDSLKRIIKFSEGLEYGMVGVNEGIISTEVAPFGGIKESGIGREGAKQGMDEYLETKYICLGGLS
>NZ_CP014038.2|WP_061065394.1|1511174_1512425_-|HD-GYP-domain-containing-protein
MAAIKLTVDRIQPGLHIRLPLKWNDHPFLLNSFKIKDQEQVEMIRHLGVKFVYFNPEQSDASPLPANQPQVEVTQDNTLDLEAQKLWKEKQKRIEKLSAYRRRVIQCEKEFERSLARMRSVMTKIRNRPVDAVGEAQQLIDDIVDKLMCDDNVTLHLMNGKNEFEDIYFHSLNVAVIAMMIGRAKGYSAEQLKALSFAALFHDIGKIKIPTAILRKQVPLTEPESNYLKLHTKYGLDMANQIEDFPDSAKTVIAQHHELRDGSGYPEGLKGDEIDELAQVIIVANAFDNLCHTSIAAEQKIPYTALSHLYKNCKHLYKEENLNILIKFMGVFPPGTVVQLSNNMVGLVISVNASHLLFPNVLVYDPAVPRTQAPIIDLASKDIKIVNAIHPSKLPEKIKEYLNPRSRISYFFDSDE
>NZ_CP014038.2|WP_009698790.1|1512570_1513569_-|LacI-family-DNA-binding-transcriptional-regulator
MARIKDVAELAGVNRSTVSRIINGEGKFREETRKKVEAAMAELNYRPSAIARSLATSSSNMVGLLVTYYTGGFFGEMMEQVQTELDMHKKFLITAQGHHSAEGEREAIQRFNDLRCDGYVLHSRYLSDDDLRELAKLPTPFVLLDRYVEGIEERCVTFNHHHASRIAVEHLIAGGHQKIVCIAGPSQRQNSLLRKRGYIDAVKTAGIDIDESWCEEGNYGRQSGYDAMAALYRRHPDLTAVFSCSEEMTVGAMQFLHEHRISVPKQISLVSFDSVDLCESLYPTVSAVHFPISDMARVAVQTLIGLIKEQPLMTQPEFEAQLKLRKADRIIT
>NZ_CP014038.2|WP_009698791.1|1513671_1514427_-|chitin-disaccharide-deacetylase
MKVIFNADDFGLTPGVNKGIIKAHQQGVVQSTTMMVGMDAERHAIELAKQNPNLNVGVHLRFTTGIPLTGHPNLTRGQTQFVSYDELWKIQDFEEEVVYQEAVAQVEAFLKLGLPLSHLDSHHHAHTHPQLLPVIRKVAQKYKVPLRGSGLCHIENNVKYYFTAEFYDQGVSLEGIMKHLLSLKAQYDVVEVMCHPAEADQSLLSKSSYAQQREVELQVLTSPVFKQELAQHGMAITDYSALVSSSGVASV
>NZ_CP014038.2|WP_017187878.1|1514444_1515767_-|6-phospho-beta-glucosidase
MPRNAIKLAIIGGGSSYTPELVEGVIKRLEFLPVKQMHFVDIESGAEKLEIIKGLAQRMIDKAGADIEIKAGFDRREAIKDADFVMTQFRVGGLTARANDERIPIKYDVIGQETTGPGGFAKALRTIPVILDICKDIEELSPHAWMLNFTNPAGLVSEAVSKYSNVKSIGLCNVPVSMEMMIAEMMDCEPKELQLEFAGLNHLVWVLKAWLKGEDVTQTVLEKVGDGANFSMKNIWEEPWDPAFLKALGAIPCPYHRYFYQTDAMLAEEKQSAGEQGTRAEQVMETESALFKLYQDPNLDHKPKELEERGGAYYSDASLNLVDAIYNNRNSIHVVNVLNNGAINGLPDSAVIECSAVIGSWGAKPLAVGELSSNIKGLLHQVKAYEQLAIEAAVEGSYEKALMALTNNPLVPDIGRAKSILDEILEVNAAYLPQFKLTTL
>NZ_CP014038.2|WP_005448800.1|1515777_1516089_-|PTS-lactose/cellobiose-transporter-subunit-IIA
MEQELVVMEIICNAGEARSLSYEALRLSREKDFTAAEEKLSQAKECINKAHLIQTQLIEEDQGEGKVPMTLVMVHAQDHLMTTILAQEMAVEIVALNKQLAAR
>NZ_CP014038.2|WP_009698793.1|1516136_1517471_-|PTS-sugar-transporter-subunit-IIC
MKLYDAIIGIVEKHIAPIAAKVGNQPHVRAMRDGFIVAMPFIIVGSFILIFAFPPFAEDTTFALGRIWLDFATTHFDTIMMPFNMSMGIMTIFVSLGVAYSLAKAYKMDGITSAVLSLMCFLLVAAPAKDGALAMKHMGGTGIFTAVMCAFFAVELYRFMKKHNITIRMPEQVPPAIARSFEVLLPVLAVFLTLYPLSIFVQTQYDMLIPDAVMAMFKPLISASNTLPAIIGALLVCQLLWFAGIHGAAIVVGLLSPIFLTNISANIDAFVAGQPIPNVFTQPFWDFYIFIGGSGATLALVMLMSFSRSAHLKSIGRMSAVPGFFQINEPVIFGSPVVMNPILFIPFVFAPIVNATIAYFAVQLGFVGMGVATTPWTTPALIGASWGSGWTFSPVLLVIGLLILDLFIYLPFFKMFEKQVMEQELPMSKESKDAEQPSGEGVTA
>NZ_CP014038.2|WP_061065395.1|1517559_1517865_-|PTS-sugar-transporter-subunit-IIB
MKKILLCCSAGMSTSMLVKKMEQVAEKQGLECKIDALSVNAFDEAIKEYDVCLLGPQVRFQLEELRKTAQEHGKNIDAISPQAYGMMKGEEVLQQALELIN
>NZ_CP014038.2|WP_005448805.1|1518269_1518719_+|type-III-secretion-system-chaperone
MSTLIEQLFQELVTDLGIDTLQPNEDGHCTLMVDETLLLDIELDPKRERLILTSLVGPLSSQQGIKQLSSLMQFNKALYKELNMSLSLETHTASIVLTYSVDAGLCTVFDLESALSCFISQTEKCRHLLESTQEDSPPKNSMLNTAICV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP014038_2	2.1\|1499969\|44\|NZ_CP014038\|PILER-CR	1499969-1500012	44	NZ_CP014038.2	1499614-1499657	0	1.0

1. spacer 2.1|1499969|44|NZ_CP014038|PILER-CR matches to position: 1499614-1499657, mismatch: 0, identity: 1.0

agtaggtcaccagttcgattccggtagtcggcaccattcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccattcttttg	Protospacer
********************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014038_1	1.1\|73406\|32\|NZ_CP014038\|CRISPRCasFinder,CRT	73406-73437	32	NZ_CP017077	Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence	217091-217122	4	0.875
NZ_CP014038_1	1.1\|73406\|32\|NZ_CP014038\|CRISPRCasFinder,CRT	73406-73437	32	CP000620	Burkholderia vietnamiensis G4 plasmid pBVIE04, complete sequence	79020-79051	5	0.844
NZ_CP014038_1	1.7\|73772\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	73772-73803	32	NZ_CP043045	Gluconobacter thailandicus strain HD924 plasmid unnamed2, complete sequence	89964-89995	6	0.812
NZ_CP014038_1	1.37\|75604\|32\|NZ_CP014038\|CRISPRCasFinder,CRT	75604-75635	32	MN695335	Synechococcus phage B23, complete genome	222929-222960	6	0.812
NZ_CP014038_1	1.37\|75604\|32\|NZ_CP014038\|CRISPRCasFinder,CRT	75604-75635	32	MN695334	Synechococcus phage B3, complete genome	224226-224257	6	0.812
NZ_CP014038_2	2.1\|1499969\|44\|NZ_CP014038\|PILER-CR	1499969-1500012	44	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	296497-296540	6	0.864
NZ_CP014038_2	2.1\|1499969\|44\|NZ_CP014038\|PILER-CR	1499969-1500012	44	NZ_LN868946	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence	103819-103862	6	0.864
NZ_CP014038_2	2.1\|1499969\|44\|NZ_CP014038\|PILER-CR	1499969-1500012	44	KU052038	Escherichia phage SerU-LTIIb, partial genome	1162-1205	6	0.864
NZ_CP014038_2	2.1\|1499969\|44\|NZ_CP014038\|PILER-CR	1499969-1500012	44	KU052038	Escherichia phage SerU-LTIIb, partial genome	3068-3111	6	0.864
NZ_CP014038_2	2.1\|1499969\|44\|NZ_CP014038\|PILER-CR	1499969-1500012	44	LN997803	Escherichia coli phage phi467	15121-15164	6	0.864
NZ_CP014038_2	2.1\|1499969\|44\|NZ_CP014038\|PILER-CR	1499969-1500012	44	NZ_CP023526	Cedecea neteri strain FDAARGOS_392 plasmid unnamed, complete sequence	1925-1968	6	0.864
NZ_CP014038_2	2.1\|1499969\|44\|NZ_CP014038\|PILER-CR	1499969-1500012	44	NC_021742	Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence	35423-35466	6	0.864
NZ_CP014038_2	2.1\|1499969\|44\|NZ_CP014038\|PILER-CR	1499969-1500012	44	MH791411	UNVERIFIED: Escherichia phage Ecwhy_1, complete genome	13640-13683	6	0.864
NZ_CP014038_2	2.1\|1499969\|44\|NZ_CP014038\|PILER-CR	1499969-1500012	44	MH494197	Escherichia phage CMSTMSU, complete genome	196767-196810	6	0.864
NZ_CP014038_1	1.5\|73650\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	73650-73681	32	NZ_CP032091	Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence	586814-586845	7	0.781
NZ_CP014038_1	1.27\|74994\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	74994-75025	32	NZ_CP007723	Corynebacterium glutamicum strain ATCC 21831 plasmid unnamed, complete sequence	9151-9182	7	0.781
NZ_CP014038_1	1.27\|74994\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	74994-75025	32	NZ_CP007725	Corynebacterium glutamicum strain AR1 plasmid unnamed, complete sequence	7981-8012	7	0.781
NZ_CP014038_2	2.1\|1499969\|44\|NZ_CP014038\|PILER-CR	1499969-1500012	44	NZ_CP022660	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence	52073-52116	7	0.841
NZ_CP014038_2	2.1\|1499969\|44\|NZ_CP014038\|PILER-CR	1499969-1500012	44	NZ_CP045061	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence	52079-52122	7	0.841
NZ_CP014038_2	2.1\|1499969\|44\|NZ_CP014038\|PILER-CR	1499969-1500012	44	NZ_CP045054	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence	52084-52127	7	0.841
NZ_CP014038_2	2.1\|1499969\|44\|NZ_CP014038\|PILER-CR	1499969-1500012	44	NZ_CP045058	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence	52083-52126	7	0.841
NZ_CP014038_1	1.1\|73406\|32\|NZ_CP014038\|CRISPRCasFinder,CRT	73406-73437	32	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	1488703-1488734	8	0.75
NZ_CP014038_1	1.25\|74872\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	74872-74903	32	NC_014025	Bacillus megaterium QM B1551 plasmid pBM500, complete sequence	63038-63069	8	0.75
NZ_CP014038_1	1.25\|74872\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	74872-74903	32	NC_015426	Clostridium botulinum BKT015925 plasmid p2BKT015925, complete sequence	32619-32650	8	0.75
NZ_CP014038_1	1.35\|75482\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	75482-75513	32	NZ_CP022700	Acetobacter tropicalis strain BDGP1 plasmid pAtBDGP1A, complete sequence	108135-108166	8	0.75
NZ_CP014038_1	1.35\|75482\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	75482-75513	32	NZ_CP042809	Acetobacter oryzoeni strain B6 plasmid unnamed1, complete sequence	22333-22364	8	0.75
NZ_CP014038_1	1.37\|75604\|32\|NZ_CP014038\|CRISPRCasFinder,CRT	75604-75635	32	NZ_CP018385	Burkholderia pseudomallei strain 2008724860 plasmid p1, complete sequence	205823-205854	8	0.75
NZ_CP014038_2	2.1\|1499969\|44\|NZ_CP014038\|PILER-CR	1499969-1500012	44	NZ_CP054057	Scandinavium goeteborgense strain CCUG 66741 plasmid pSg66741_1, complete sequence	85812-85855	8	0.818
NZ_CP014038_2	2.1\|1499969\|44\|NZ_CP014038\|PILER-CR	1499969-1500012	44	KY653118	Morganella phage IME1369_01, complete genome	693-736	8	0.818
NZ_CP014038_1	1.1\|73406\|32\|NZ_CP014038\|CRISPRCasFinder,CRT	73406-73437	32	MF150911	Ralstonia phage DU_RP_II, complete genome	18596-18627	9	0.719
NZ_CP014038_1	1.1\|73406\|32\|NZ_CP014038\|CRISPRCasFinder,CRT	73406-73437	32	MN996301	Ralstonia phage RpY1, complete genome	35065-35096	9	0.719
NZ_CP014038_1	1.5\|73650\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	73650-73681	32	KT962247	Cellulophaga phage phi17:2_18, complete genome	51291-51322	9	0.719
NZ_CP014038_1	1.5\|73650\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	73650-73681	32	KT962246	Cellulophaga phage phi4:1_18, complete genome	50892-50923	9	0.719
NZ_CP014038_1	1.5\|73650\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	73650-73681	32	KT962245	Cellulophaga phage phi4:1_13, complete genome	50892-50923	9	0.719
NZ_CP014038_1	1.5\|73650\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	73650-73681	32	KC821632	Cellulophaga phage phi4:1, complete genome	50892-50923	9	0.719
NZ_CP014038_1	1.5\|73650\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	73650-73681	32	NC_021798	Cellulophaga phage phi17:2, complete genome	51291-51322	9	0.719
NZ_CP014038_1	1.6\|73711\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	73711-73742	32	NZ_CP022523	Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence	506279-506310	9	0.719
NZ_CP014038_1	1.7\|73772\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	73772-73803	32	MG592586	Vibrio phage 1.215.B._10N.222.54.F7, partial genome	72159-72190	9	0.719
NZ_CP014038_1	1.7\|73772\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	73772-73803	32	MG592585	Vibrio phage 1.215.A._10N.222.54.F7, partial genome	72160-72191	9	0.719
NZ_CP014038_1	1.7\|73772\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	73772-73803	32	CP002510	Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB28, complete sequence	24836-24867	9	0.719
NZ_CP014038_1	1.19\|74505\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	74505-74536	32	NC_008271	Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence	330044-330075	9	0.719
NZ_CP014038_1	1.35\|75482\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	75482-75513	32	KT264794	Gokushovirus WZ-2015a isolate 46Fx8, complete genome	4523-4554	9	0.719
NZ_CP014038_1	1.4\|73589\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	73589-73620	32	NC_008242	Chelativorans sp. BNC1 plasmid 1, complete sequence	169634-169665	10	0.688
NZ_CP014038_1	1.4\|73589\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	73589-73620	32	MT939492	Xanthomonas phage Xoo-sp14, complete genome	85916-85947	10	0.688
NZ_CP014038_1	1.6\|73711\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	73711-73742	32	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1401346-1401377	10	0.688
NZ_CP014038_1	1.6\|73711\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	73711-73742	32	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	186901-186932	10	0.688
NZ_CP014038_1	1.22\|74689\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	74689-74720	32	NZ_LN907828	Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence	513426-513457	10	0.688
NZ_CP014038_1	1.30\|75177\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	75177-75208	32	NZ_CP017255	Clostridium taeniosporum strain 1/k plasmid pCt2, complete sequence	4012-4043	10	0.688
NZ_CP014038_2	2.1\|1499969\|44\|NZ_CP014038\|PILER-CR	1499969-1500012	44	NC_049942	Escherichia phage JLK-2012, complete sequence	23522-23565	10	0.773
NZ_CP014038_1	1.7\|73772\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	73772-73803	32	MT889379	Gordonia phage Diabla, complete genome	16284-16315	11	0.656
NZ_CP014038_1	1.7\|73772\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	73772-73803	32	MG770214	Gordonia phage SteveFrench, complete genome	17157-17188	11	0.656
NZ_CP014038_1	1.8\|73833\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	73833-73864	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	810896-810927	11	0.656
NZ_CP014038_1	1.8\|73833\|32\|NZ_CP014038\|CRISPRCasFinder,CRT,PILER-CR	73833-73864	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	833515-833546	11	0.656
NZ_CP014038_2	2.1\|1499969\|44\|NZ_CP014038\|PILER-CR	1499969-1500012	44	LC494302	Escherichia phage SP27 DNA, complete genome	76609-76652	11	0.75
NZ_CP014038_2	2.1\|1499969\|44\|NZ_CP014038\|PILER-CR	1499969-1500012	44	LT603033	Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I	17115-17158	11	0.75
NZ_CP014038_2	2.1\|1499969\|44\|NZ_CP014038\|PILER-CR	1499969-1500012	44	NC_027364	Escherichia phage PBECO 4, complete genome	207827-207870	11	0.75

1. spacer 1.1|73406|32|NZ_CP014038|CRISPRCasFinder,CRT matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 4, identity: 0.875

cgcgcaat-gtcggcagctctggcgcgctgctg	CRISPR spacer
-gcgaaatcgtcggcagctcttgagcgctgctg	Protospacer
 *** *** ************ * *********

2. spacer 1.1|73406|32|NZ_CP014038|CRISPRCasFinder,CRT matches to CP000620 (Burkholderia vietnamiensis G4 plasmid pBVIE04, complete sequence) position: , mismatch: 5, identity: 0.844

cgcgcaatgtcggcagctctggcgcgctgctg	CRISPR spacer
cgcgcaatctcggccgctctggcgcggcgcag	Protospacer
******** ***** *********** .** *

3. spacer 1.7|73772|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043045 (Gluconobacter thailandicus strain HD924 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

taaacgcgctgatatggatcgtttggtattgg--	CRISPR spacer
caaacgcgctgatatggaccgctt--tcttggtc	Protospacer
.*****************.**.**  * ****

4. spacer 1.37|75604|32|NZ_CP014038|CRISPRCasFinder,CRT matches to MN695335 (Synechococcus phage B23, complete genome) position: , mismatch: 6, identity: 0.812

ataatca-cgttgatacttaccagcatcttttg	CRISPR spacer
-ttttcattgttgatacttaccattatcttttg	Protospacer
 *  *** .************** .********

5. spacer 1.37|75604|32|NZ_CP014038|CRISPRCasFinder,CRT matches to MN695334 (Synechococcus phage B3, complete genome) position: , mismatch: 6, identity: 0.812

ataatca-cgttgatacttaccagcatcttttg	CRISPR spacer
-ttttcattgttgatacttaccattatcttttg	Protospacer
 *  *** .************** .********

6. spacer 2.1|1499969|44|NZ_CP014038|PILER-CR matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 6, identity: 0.864

agtaggtcaccagttcgattccggtagtcggcaccattcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccatatgcggg	Protospacer
************************************* . .  *

7. spacer 2.1|1499969|44|NZ_CP014038|PILER-CR matches to NZ_LN868946 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence) position: , mismatch: 6, identity: 0.864

agtaggtcaccagttcgattccggtagtcggcaccattcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccatcaagtcc	Protospacer
*************************************.   *.

8. spacer 2.1|1499969|44|NZ_CP014038|PILER-CR matches to KU052038 (Escherichia phage SerU-LTIIb, partial genome) position: , mismatch: 6, identity: 0.864

agtaggtcaccagttcgattccggtagtcggcaccattcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccatatgcggg	Protospacer
************************************* . .  *

9. spacer 2.1|1499969|44|NZ_CP014038|PILER-CR matches to KU052038 (Escherichia phage SerU-LTIIb, partial genome) position: , mismatch: 6, identity: 0.864

agtaggtcaccagttcgattccggtagtcggcaccattcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccatatgcggg	Protospacer
************************************* . .  *

10. spacer 2.1|1499969|44|NZ_CP014038|PILER-CR matches to LN997803 (Escherichia coli phage phi467) position: , mismatch: 6, identity: 0.864

agtaggtcaccagttcgattccggtagtcggcaccattcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccatatgcggg	Protospacer
************************************* . .  *

11. spacer 2.1|1499969|44|NZ_CP014038|PILER-CR matches to NZ_CP023526 (Cedecea neteri strain FDAARGOS_392 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.864

agtaggtcaccagttcgattccggtagtcggcaccattcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccagaatgcgg	Protospacer
************************************   * . *

12. spacer 2.1|1499969|44|NZ_CP014038|PILER-CR matches to NC_021742 (Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.864

agtaggtcaccagttcgattccggtagtcggcaccattcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagccggcaccaatcaagtc	Protospacer
***************************.******** **   *

13. spacer 2.1|1499969|44|NZ_CP014038|PILER-CR matches to MH791411 (UNVERIFIED: Escherichia phage Ecwhy_1, complete genome) position: , mismatch: 6, identity: 0.864

agtaggtcaccagttcgattccggtagtcggcaccattcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcacaaatcagccg	Protospacer
********************************** * **  ..*

14. spacer 2.1|1499969|44|NZ_CP014038|PILER-CR matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 6, identity: 0.864

agtaggtcaccagttcgattccggtagtcggcaccattcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcacaaatcagccg	Protospacer
********************************** * **  ..*

15. spacer 1.5|73650|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032091 (Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

-aaatcgtagtataagtattcacatttgcaaat	CRISPR spacer
ttaatta-agtattagtattcacctttgcaaag	Protospacer
  ***.. ***** ********* ********

16. spacer 1.27|74994|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007723 (Corynebacterium glutamicum strain ATCC 21831 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cacttggagttattgatcgagag-----tgatcaaaa	CRISPR spacer
cactcggagttcttgatcgagagtttgttgat-----	Protospacer
****.****** ***********     ****

17. spacer 1.27|74994|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007725 (Corynebacterium glutamicum strain AR1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cacttggagttattgatcgagag-----tgatcaaaa	CRISPR spacer
cactcggagttcttgatcgagagtttgttgat-----	Protospacer
****.****** ***********     ****

18. spacer 2.1|1499969|44|NZ_CP014038|PILER-CR matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 7, identity: 0.841

agtaggtcaccagttcgattccggtagtcggcaccattcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccacttacgac	Protospacer
************************************.*. .

19. spacer 2.1|1499969|44|NZ_CP014038|PILER-CR matches to NZ_CP045061 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence) position: , mismatch: 7, identity: 0.841

agtaggtcaccagttcgattccggtagtcggcaccattcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccacttacgac	Protospacer
************************************.*. .

20. spacer 2.1|1499969|44|NZ_CP014038|PILER-CR matches to NZ_CP045054 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence) position: , mismatch: 7, identity: 0.841

agtaggtcaccagttcgattccggtagtcggcaccattcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccacttacgac	Protospacer
************************************.*. .

21. spacer 2.1|1499969|44|NZ_CP014038|PILER-CR matches to NZ_CP045058 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence) position: , mismatch: 7, identity: 0.841

agtaggtcaccagttcgattccggtagtcggcaccattcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccacttacgac	Protospacer
************************************.*. .

22. spacer 1.1|73406|32|NZ_CP014038|CRISPRCasFinder,CRT matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 8, identity: 0.75

cgcgcaatgtcggcagctctggcgcgctgctg	CRISPR spacer
cgcgtaatgtcggcagccctggccggccttgg	Protospacer
****.************.*****  **. . *

23. spacer 1.25|74872|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to NC_014025 (Bacillus megaterium QM B1551 plasmid pBM500, complete sequence) position: , mismatch: 8, identity: 0.75

gtcaaacattttgaatggatagattatgagta	CRISPR spacer
attattgatttttaatggattgattatgagtg	Protospacer
.*.*   ***** ******* **********.

24. spacer 1.25|74872|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to NC_015426 (Clostridium botulinum BKT015925 plasmid p2BKT015925, complete sequence) position: , mismatch: 8, identity: 0.75

gtcaaacattttgaatggatagattatgagta	CRISPR spacer
agaaatcaatttgaatggatagattatccata	Protospacer
.  ** ** ******************  .**

25. spacer 1.35|75482|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022700 (Acetobacter tropicalis strain BDGP1 plasmid pAtBDGP1A, complete sequence) position: , mismatch: 8, identity: 0.75

ctgatttgctttcttttgctggctcgtccttt	CRISPR spacer
cctatttcctttcttttgctggctggtcgcgg	Protospacer
*. **** **************** *** .

26. spacer 1.35|75482|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042809 (Acetobacter oryzoeni strain B6 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ctgatttgctttcttttgctggctcgtccttt	CRISPR spacer
cctatttcctttcttttgctggctggtcgcgg	Protospacer
*. **** **************** *** .

27. spacer 1.37|75604|32|NZ_CP014038|CRISPRCasFinder,CRT matches to NZ_CP018385 (Burkholderia pseudomallei strain 2008724860 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

--ataatcacgttgatacttaccagcatcttttg	CRISPR spacer
tcgtgat--cgttgatactcaccatcatctttcc	Protospacer
  .*.**  **********.**** *******.

28. spacer 2.1|1499969|44|NZ_CP014038|PILER-CR matches to NZ_CP054057 (Scandinavium goeteborgense strain CCUG 66741 plasmid pSg66741_1, complete sequence) position: , mismatch: 8, identity: 0.818

agtaggtcaccagttcgattccggtagtcggcaccattcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccaaatgcggt	Protospacer
************************************  . .

29. spacer 2.1|1499969|44|NZ_CP014038|PILER-CR matches to KY653118 (Morganella phage IME1369_01, complete genome) position: , mismatch: 8, identity: 0.818

agtaggtcaccagttcgattccggtagtcggcaccattcttttg	CRISPR spacer
agtaggtcaccagttcgactccggtagccggcaccatattaaac	Protospacer
******************.********.********* .*

30. spacer 1.1|73406|32|NZ_CP014038|CRISPRCasFinder,CRT matches to MF150911 (Ralstonia phage DU_RP_II, complete genome) position: , mismatch: 9, identity: 0.719

cgcgcaatgtcggcagctctggcgcgctgctg	CRISPR spacer
aaccgtttgtcggcagcttgggcgcgctgcag	Protospacer
 .*    ***********. ********** *

31. spacer 1.1|73406|32|NZ_CP014038|CRISPRCasFinder,CRT matches to MN996301 (Ralstonia phage RpY1, complete genome) position: , mismatch: 9, identity: 0.719

cgcgcaatgtcggcagctctggcgcgctgctg	CRISPR spacer
aaccgtttgtcggcagcttgggcgcgctgcag	Protospacer
 .*    ***********. ********** *

32. spacer 1.5|73650|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to KT962247 (Cellulophaga phage phi17:2_18, complete genome) position: , mismatch: 9, identity: 0.719

aaatcgtagtataagtattcacatttgcaaat	CRISPR spacer
ctacttttttatatgtattcatatttgcaaat	Protospacer
  *.. *  **** *******.**********

33. spacer 1.5|73650|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to KT962246 (Cellulophaga phage phi4:1_18, complete genome) position: , mismatch: 9, identity: 0.719

aaatcgtagtataagtattcacatttgcaaat	CRISPR spacer
ctacttttttatatgtattcatatttgcaaat	Protospacer
  *.. *  **** *******.**********

34. spacer 1.5|73650|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to KT962245 (Cellulophaga phage phi4:1_13, complete genome) position: , mismatch: 9, identity: 0.719

aaatcgtagtataagtattcacatttgcaaat	CRISPR spacer
ctacttttttatatgtattcatatttgcaaat	Protospacer
  *.. *  **** *******.**********

35. spacer 1.5|73650|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to KC821632 (Cellulophaga phage phi4:1, complete genome) position: , mismatch: 9, identity: 0.719

aaatcgtagtataagtattcacatttgcaaat	CRISPR spacer
ctacttttttatatgtattcatatttgcaaat	Protospacer
  *.. *  **** *******.**********

36. spacer 1.5|73650|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to NC_021798 (Cellulophaga phage phi17:2, complete genome) position: , mismatch: 9, identity: 0.719

aaatcgtagtataagtattcacatttgcaaat	CRISPR spacer
ctacttttttatatgtattcatatttgcaaat	Protospacer
  *.. *  **** *******.**********

37. spacer 1.6|73711|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022523 (Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence) position: , mismatch: 9, identity: 0.719

acacttctttgtgttgagcagttcgccaatgg	CRISPR spacer
taactgctttgtgttgagctgttcggcttccg	Protospacer
  *** ************* ***** *  . *

38. spacer 1.7|73772|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to MG592586 (Vibrio phage 1.215.B._10N.222.54.F7, partial genome) position: , mismatch: 9, identity: 0.719

taaacgcgctgatatggatcgtttggtattgg--	CRISPR spacer
taaaggcgctaatatggatcgttt--ccctaatc	Protospacer
**** *****.*************  . .*..

39. spacer 1.7|73772|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to MG592585 (Vibrio phage 1.215.A._10N.222.54.F7, partial genome) position: , mismatch: 9, identity: 0.719

taaacgcgctgatatggatcgtttggtattgg--	CRISPR spacer
taaaggcgctaatatggatcgttt--ccctaatc	Protospacer
**** *****.*************  . .*..

40. spacer 1.7|73772|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to CP002510 (Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB28, complete sequence) position: , mismatch: 9, identity: 0.719

taaacgcgctgatatggatcgtttggtattgg	CRISPR spacer
aataactaatgctatggaacgtttggtattgg	Protospacer
 * *  .. ** ****** *************

41. spacer 1.19|74505|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to NC_008271 (Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence) position: , mismatch: 9, identity: 0.719

cgtccagcggcaggaatgaccacatctgagtc	CRISPR spacer
aatccagcggcaggactgaccgcatccggtat	Protospacer
 .************* *****.****.*.  .

42. spacer 1.35|75482|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to KT264794 (Gokushovirus WZ-2015a isolate 46Fx8, complete genome) position: , mismatch: 9, identity: 0.719

ctgatttgctttcttttgctggctcgtccttt	CRISPR spacer
ttgatttgctttgttttgcttgctgtgcgcat	Protospacer
.*********** ******* ***   * . *

43. spacer 1.4|73589|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to NC_008242 (Chelativorans sp. BNC1 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688

tttgtgtctgcctcgatgtcgctcatcatctc	CRISPR spacer
cacaatttcgcctcgaggtcgctcagcatctc	Protospacer
. ..  *..******* ******** ******

44. spacer 1.4|73589|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to MT939492 (Xanthomonas phage Xoo-sp14, complete genome) position: , mismatch: 10, identity: 0.688

tttgtgtctgcctcgatgtcgctcatcatctc	CRISPR spacer
agagacgctgcctcgatggcgcgcatcatcca	Protospacer
   *   *********** *** *******.

45. spacer 1.6|73711|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.688

acacttctttgtgttgagcagttcgccaatgg	CRISPR spacer
ctggactgttgtcttgagcagttcgccattgg	Protospacer
 ..  .. **** *************** ***

46. spacer 1.6|73711|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 10, identity: 0.688

acacttctttgtgttgagcagttcgccaatgg	CRISPR spacer
ctggactgttgtcttgagcagttcgccattgg	Protospacer
 ..  .. **** *************** ***

47. spacer 1.22|74689|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LN907828 (Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence) position: , mismatch: 10, identity: 0.688

caatcagcaaaagcatggtggtggataacaac	CRISPR spacer
gcatcagcaaaggcatgctggtggaagtggag	Protospacer
  *********.***** ******* .  .*

48. spacer 1.30|75177|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017255 (Clostridium taeniosporum strain 1/k plasmid pCt2, complete sequence) position: , mismatch: 10, identity: 0.688

ccatatcagactgagtagatacaacagataaa	CRISPR spacer
ttgagcctgattcagtagatacaacagataag	Protospacer
... ..* **.* ******************.

49. spacer 2.1|1499969|44|NZ_CP014038|PILER-CR matches to NC_049942 (Escherichia phage JLK-2012, complete sequence) position: , mismatch: 10, identity: 0.773

agtaggtcaccagttcgattccggtagtcggcaccattcttttg	CRISPR spacer
atcaggtcgccagttcgattccggtagccggcaccatatgcggg	Protospacer
* .*****.******************.********* . .  *

50. spacer 1.7|73772|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to MT889379 (Gordonia phage Diabla, complete genome) position: , mismatch: 11, identity: 0.656

taaacgcgctgatatggatcgtttggtattgg	CRISPR spacer
gtggcgcgctgagatggatcgttgggtgagac	Protospacer
  ..******** ********** ***.  .

51. spacer 1.7|73772|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to MG770214 (Gordonia phage SteveFrench, complete genome) position: , mismatch: 11, identity: 0.656

taaacgcgctgatatggatcgtttggtattgg	CRISPR spacer
gtggcgcgctgagatggatcgttgggtgagac	Protospacer
  ..******** ********** ***.  .

52. spacer 1.8|73833|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 11, identity: 0.656

attacaagcctgggacgatgattattcacaag	CRISPR spacer
gcggcaagccggggacgatgattaatcgatgt	Protospacer
.. .****** ************* **.  .

53. spacer 1.8|73833|32|NZ_CP014038|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 11, identity: 0.656

attacaagcctgggacgatgattattcacaag	CRISPR spacer
gcggcaagccggggacgatgattaatcgatgt	Protospacer
.. .****** ************* **.  .

54. spacer 2.1|1499969|44|NZ_CP014038|PILER-CR matches to LC494302 (Escherichia phage SP27 DNA, complete genome) position: , mismatch: 11, identity: 0.75

agtaggtcaccagttcgattccggtagtcggcaccattcttttg	CRISPR spacer
gaaaggtcaccagttcgattccggtagtcggcacaaaataaagg	Protospacer
.. ******************************* *  .    *

55. spacer 2.1|1499969|44|NZ_CP014038|PILER-CR matches to LT603033 (Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I) position: , mismatch: 11, identity: 0.75

agtaggtcaccagttcgattccggtagtcggcaccattcttttg	CRISPR spacer
gaaaggtcaccagttcgattccggtagtcggcacaaaataaagg	Protospacer
.. ******************************* *  .    *

56. spacer 2.1|1499969|44|NZ_CP014038|PILER-CR matches to NC_027364 (Escherichia phage PBECO 4, complete genome) position: , mismatch: 11, identity: 0.75

agtaggtcaccagttcgattccggtagtcggcaccattcttttg	CRISPR spacer
gaaaggtcaccagttcgattccggtagtcggcacaaaataaagg	Protospacer
.. ******************************* *  .    *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1421829 : 1439485

uncultured_Mediterranean_phage(18.18%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045490051.1\|1421829_1424412_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	5.0e-78	37.7
WP_009703750.1\|1424554_1425022_-	recombination regulator RecX	NA	NA	NA	NA
WP_005436413.1\|1425228_1426272_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	3.1e-111	60.4
WP_009703950.1\|1426473_1426956_-	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	2.4e-26	47.5
WP_047512941.1\|1427041_1429603_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	4.4e-34	22.8
WP_005452115.1\|1429696_1430680_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	6.9e-36	35.2
WP_009698767.1\|1430760_1431684_-	peptidoglycan DD-metalloendopeptidase family protein	D7RWE0	Brochothrix_phage	2.4e-06	36.4
WP_005452113.1\|1431698_1432325_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.4e-37	53.9
WP_009698768.1\|1432324_1433101_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	7.0e-68	54.1
WP_061065384.1\|1433100_1434144_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_005425365.1\|1434189_1434666_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_038899663.1\|1434680_1435391_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	1.8e-06	24.0
WP_005452106.1\|1435392_1435674_-	cell division protein FtsB	NA	NA	NA	NA
WP_005425372.1\|1436465_1437767_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	3.5e-136	60.3
WP_005449808.1\|1437844_1439485_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	9.4e-155	51.9

DBSCAN-SWA_2

2611712 : 2618779

Faustovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005447719.1\|2611712_2612927_+	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	9.7e-32	30.2
WP_005424883.1\|2612964_2613348_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
WP_005424893.1\|2613421_2613745_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.0e-25	51.4
WP_005447715.1\|2613800_2614316_+	co-chaperone HscB	NA	NA	NA	NA
WP_061065602.1\|2614337_2616191_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.6e-110	40.0
WP_005424889.1\|2616204_2616543_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_005424887.1\|2616587_2616782_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_005447710.1\|2616954_2618253_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	9.1e-36	34.7
WP_005440311.1\|2618353_2618779_+	nucleoside-diphosphate kinase	L7Y4C4	Megavirus	2.7e-21	40.6

DBSCAN-SWA_3

2729417 : 2736101

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005447599.1\|2729417_2730557_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.9e-62	41.7
WP_061065642.1\|2730574_2731825_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.3e-99	48.2
WP_005424846.1\|2731952_2732402_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_009697719.1\|2732409_2733534_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	5.4e-45	35.7
WP_029789187.1\|2733545_2734199_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.1e-34	38.0
WP_009703896.1\|2734351_2735461_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.8e-64	40.1
WP_005440184.1\|2735630_2736101_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-32	49.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP014039

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2254755 : 2279855

Vibrio_phage(52.38%)

head,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061066634.1\|2254755_2256750_+\|transposase	Mu transposase C-terminal domain-containing protein	M4M9R2	Vibrio_phage	3.4e-268	70.2
WP_061066635.1\|2256785_2257730_+	AAA family ATPase	M4M9P4	Vibrio_phage	5.1e-129	75.6
WP_155488189.1\|2257741_2257894_+	hypothetical protein	NA	NA	NA	NA
WP_061066636.1\|2257902_2258316_+	hypothetical protein	NA	NA	NA	NA
WP_061066637.1\|2258312_2258705_+	hypothetical protein	NA	NA	NA	NA
WP_050940466.1\|2258701_2259103_+	hypothetical protein	NA	NA	NA	NA
WP_050940464.1\|2259102_2259390_+	hypothetical protein	NA	NA	NA	NA
WP_061066638.1\|2259373_2259577_+	hypothetical protein	NA	NA	NA	NA
WP_061066639.1\|2259580_2260207_+	DUF3164 family protein	A4JWM8	Burkholderia_virus	3.3e-36	40.0
WP_061066640.1\|2260220_2260703_-	hypothetical protein	NA	NA	NA	NA
WP_061066641.1\|2260732_2261218_+	hypothetical protein	M4MHH2	Vibrio_phage	3.1e-37	55.1
WP_050940453.1\|2261228_2261432_+	hypothetical protein	NA	NA	NA	NA
WP_050940452.1\|2261518_2261749_+	hypothetical protein	A0A2I7S9D2	Vibrio_phage	2.2e-17	56.6
WP_050940450.1\|2261758_2262025_+	hypothetical protein	NA	NA	NA	NA
WP_050940448.1\|2262017_2262536_+	regulatory protein GemA	A0A2I7S9B8	Vibrio_phage	3.6e-52	60.4
WP_061066642.1\|2262528_2262777_+	hypothetical protein	NA	NA	NA	NA
WP_080994664.1\|2262845_2263226_+	hypothetical protein	M4MHG9	Vibrio_phage	3.5e-28	49.6
WP_061066644.1\|2263301_2263868_+	N-acetylmuramidase	A0A2I7S9B9	Vibrio_phage	9.0e-73	71.0
WP_061066645.1\|2263867_2264140_+	hypothetical protein	A0A2I7S9C2	Vibrio_phage	9.8e-17	56.0
WP_061066646.1\|2264124_2264724_+	hypothetical protein	M1NVP4	Vibrio_phage	5.6e-41	51.0
WP_050940477.1\|2264747_2264978_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_061066647.1\|2264964_2265264_+	DUF2730 family protein	NA	NA	NA	NA
WP_050940436.1\|2265272_2265566_+	hypothetical protein	A0A2I7S9D8	Vibrio_phage	7.0e-37	79.8
WP_050940435.1\|2265575_2266145_+	DUF3486 family protein	M4MCR3	Vibrio_phage	6.7e-52	61.2
WP_050940433.1\|2266144_2267794_+	hypothetical protein	A0A0C4UR29	Shigella_phage	3.4e-213	68.1
WP_061066703.1\|2267809_2269372_+	DUF935 domain-containing protein	C9DGN6	Escherichia_phage	1.8e-123	48.4
WP_061066704.1\|2269382_2270792_+	F protein	A0A2H4IYU7	uncultured_Caudovirales_phage	3.2e-63	51.0
WP_050940429.1\|2270788_2270992_+	hypothetical protein	NA	NA	NA	NA
WP_050940427.1\|2270991_2271465_+	phage virion morphogenesis protein	NA	NA	NA	NA
WP_061066648.1\|2271698_2272826_+	hypothetical protein	A0A0C4UQU6	Shigella_phage	5.1e-67	40.7
WP_061066649.1\|2272841_2273231_+	hypothetical protein	NA	NA	NA	NA
WP_061066650.1\|2273272_2274166_+\|head	Mu-like prophage major head subunit gpT family protein	J9SVY7	Pseudomonas_phage	7.5e-74	46.1
WP_050940059.1\|2274640_2275069_+	DUF1320 domain-containing protein	A0A0M3LP98	Mannheimia_phage	2.5e-14	34.8
WP_050940061.1\|2275065_2275503_+	hypothetical protein	NA	NA	NA	NA
WP_050940063.1\|2275492_2276422_+	hypothetical protein	K7XS75	uncultured_Mediterranean_phage	6.7e-33	33.3
WP_050940064.1\|2276447_2276780_+	hypothetical protein	G8EY05	Synechococcus_phage	4.4e-11	35.2
WP_123947196.1\|2276803_2277115_+	hypothetical protein	NA	NA	NA	NA
WP_061066652.1\|2277098_2279855_+	tape measure protein	A0A1C6ZDP8	Pseudomonas_phage	4.8e-18	24.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014038

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP014039

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection