CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP014127	Pantoea vagans strain FDAARGOS_160 plasmid unnamed2, complete sequence	0 crisprs	csa3	0
NZ_CP014129	Pantoea vagans strain FDAARGOS_160 chromosome, complete genome	0 crisprs	DEDDh,cas3,DinG,csa3	6
NZ_CP014126	Pantoea vagans strain FDAARGOS_160 plasmid unnamed1, complete sequence	0 crisprs	NA	1
NZ_CP014128	Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1086030 : 1094808

Streptococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061061705.1\|1086030_1087143_-	porin OmpC	Q1MVN1	Enterobacteria_phage	5.6e-111	56.2
WP_010255198.1\|1087381_1088485_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.7e-59	42.4
WP_061061706.1\|1088495_1089749_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	4.3e-91	44.1
WP_061061707.1\|1090110_1090842_+	chromophore lyase	A0A2I6PIE7	Escherichia_phage	6.4e-47	37.5
WP_061061709.1\|1091747_1092215_+	glycoside hydrolase family protein	H9C148	Vibrio_phage	8.9e-26	44.7
WP_061061710.1\|1092211_1092559_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	5.4e-20	45.6
WP_061061711.1\|1092555_1092849_+	hypothetical protein	NA	NA	NA	NA
WP_061061712.1\|1093053_1094808_+	amylovoran biosynthesis protein AmsF	A0A1S6L3G8	Erwinia_phage	2.1e-152	46.4

DBSCAN-SWA_2

1157524 : 1211901

uncultured_Caudovirales_phage(22.22%)

coat,terminase,tRNA,plate,integrase,tail,protease

attL 1157455:1157475|attR 1204147:1204167

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1157455:1157475	attL	NA	NA	NA	NA
WP_061061749.1\|1157524_1158568_-\|integrase	site-specific integrase	K7PKD7	Enterobacteria_phage	4.4e-57	35.5
WP_071888711.1\|1158880_1159201_-	DUF5406 family protein	B0ZSH8	Halomonas_phage	9.7e-24	51.8
WP_061061751.1\|1159257_1159632_-	hypothetical protein	A0A173GC52	Salmonella_phage	3.9e-08	38.3
WP_061061752.1\|1159628_1159847_-	hypothetical protein	A0A2H4IYB3	uncultured_Caudovirales_phage	7.3e-31	87.1
WP_105399947.1\|1159904_1160399_-	hypothetical protein	NA	NA	NA	NA
WP_061061754.1\|1160395_1160638_-	DNA polymerase III subunit theta	A0A2H4J4A9	uncultured_Caudovirales_phage	2.8e-31	88.8
WP_061061755.1\|1160668_1160980_-	hypothetical protein	A0A0S3UG40	Pseudomonas_phage	1.5e-05	39.1
WP_061061756.1\|1161062_1161437_-	hypothetical protein	NA	NA	NA	NA
WP_061061757.1\|1161433_1161952_-	hypothetical protein	A0A291L9X9	Bordetella_phage	5.3e-11	46.5
WP_061061758.1\|1161948_1162671_-	hypothetical protein	A0A2I2L6M3	Escherichia_phage	5.6e-11	58.6
WP_061061759.1\|1162720_1163029_-	hypothetical protein	A0A2H4JCD0	uncultured_Caudovirales_phage	4.9e-41	87.3
WP_061061760.1\|1163056_1163533_-	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	7.1e-55	82.7
WP_061061761.1\|1163533_1164148_-	ERF family protein	A0A1W6JP21	Morganella_phage	4.7e-67	66.0
WP_192951267.1\|1164134_1164293_-	hypothetical protein	NA	NA	NA	NA
WP_061061762.1\|1164282_1164480_-	DUF5444 family protein	A0A075B8F9	Enterobacteria_phage	3.1e-20	69.2
WP_105399948.1\|1164476_1164620_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	NA	NA	NA	NA
WP_192951268.1\|1164771_1164948_-	hypothetical protein	NA	NA	NA	NA
WP_061061763.1\|1164967_1165231_-	hypothetical protein	NA	NA	NA	NA
WP_061061764.1\|1165344_1165836_-	hypothetical protein	A0A2H4J4Q4	uncultured_Caudovirales_phage	1.9e-39	52.5
WP_192951269.1\|1165886_1166045_-	hypothetical protein	NA	NA	NA	NA
WP_061061765.1\|1166051_1166291_-	hypothetical protein	A0A2H4J657	uncultured_Caudovirales_phage	6.6e-09	46.0
WP_061061766.1\|1166738_1167428_-	helix-turn-helix transcriptional regulator	F1C5C2	Cronobacter_phage	1.2e-111	90.0
WP_058956766.1\|1167526_1167754_+	helix-turn-helix transcriptional regulator	S5FKP1	Shigella_phage	3.0e-11	50.0
WP_061061767.1\|1167870_1168140_+	hypothetical protein	I6RSP4	Salmonella_phage	4.6e-19	64.0
WP_061061768.1\|1168175_1168877_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_061061769.1\|1168876_1169755_+	hypothetical protein	G8C7U5	Escherichia_phage	1.2e-100	68.1
WP_061061770.1\|1169757_1170609_+	ATP-binding protein	K7PLU3	Enterobacteria_phage	6.2e-94	62.7
WP_061061771.1\|1170605_1170830_+	hypothetical protein	A0A2H4J1E7	uncultured_Caudovirales_phage	5.4e-21	81.4
WP_192951270.1\|1170826_1171093_+	DUF3850 domain-containing protein	R9TML3	Aeromonas_phage	2.0e-22	66.7
WP_061061773.1\|1171073_1171430_+	hypothetical protein	NA	NA	NA	NA
WP_061063676.1\|1171440_1171728_+	hypothetical protein	Q6UAT9	Klebsiella_phage	1.7e-27	64.0
WP_061061774.1\|1171724_1171922_+	hypothetical protein	A0A2H4J4C7	uncultured_Caudovirales_phage	3.2e-09	42.9
WP_061061775.1\|1171893_1172328_+	recombination protein NinB	A0A2H4J8D9	uncultured_Caudovirales_phage	7.1e-70	92.9
WP_061061776.1\|1172324_1172615_+	hypothetical protein	A0A2H4JI39	uncultured_Caudovirales_phage	5.5e-10	36.8
WP_061061777.1\|1172607_1172808_+	hypothetical protein	A0A2H4JE12	uncultured_Caudovirales_phage	3.4e-27	90.6
WP_105399982.1\|1172804_1173014_+	hypothetical protein	R9TRD3	Aeromonas_phage	4.2e-12	49.3
WP_071888648.1\|1173103_1173289_+	hypothetical protein	A0A2H4J175	uncultured_Caudovirales_phage	9.9e-13	67.8
WP_061061779.1\|1173281_1173863_+	recombination protein NinG	A0A2R2Z332	Escherichia_phage	2.9e-34	44.4
WP_061061780.1\|1173859_1174057_+	Lar family restriction alleviation protein	M9NZE6	Enterobacteria_phage	6.6e-23	75.4
WP_061061781.1\|1174168_1174990_+	antitermination protein	E5AGG3	Erwinia_phage	6.7e-93	63.2
WP_061061782.1\|1175269_1175683_-	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	1.9e-19	39.0
WP_061061783.1\|1175728_1175911_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_061061784.1\|1176208_1176628_+	hypothetical protein	NA	NA	NA	NA
WP_061061785.1\|1176624_1176861_+	hypothetical protein	NA	NA	NA	NA
WP_061061786.1\|1176857_1177325_+	glycoside hydrolase family protein	H9C148	Vibrio_phage	2.0e-25	41.1
WP_061061787.1\|1177321_1177666_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	1.8e-20	45.0
WP_061061788.1\|1177662_1177959_+	hypothetical protein	NA	NA	NA	NA
WP_061061789.1\|1178106_1178376_+	hypothetical protein	NA	NA	NA	NA
WP_061061790.1\|1178653_1179181_+	KilA-N domain-containing protein	A0A1V0E5P7	Salmonella_phage	2.0e-50	62.5
WP_061061791.1\|1179272_1179707_-	hypothetical protein	NA	NA	NA	NA
WP_061061792.1\|1179729_1180299_+\|terminase	terminase small subunit	G0ZND3	Cronobacter_phage	2.5e-75	75.1
WP_061061793.1\|1180285_1181758_+	DNA-packaging protein	G0ZND4	Cronobacter_phage	1.8e-245	84.6
WP_061063677.1\|1181830_1183168_+	DUF4055 domain-containing protein	A0A0S2SYJ5	Pseudomonas_phage	2.2e-85	40.4
WP_061061794.1\|1183288_1184041_+	hypothetical protein	G8C7P6	Escherichia_phage	8.0e-61	49.2
WP_061061795.1\|1184055_1185180_+\|coat	P22 coat - protein 5 family protein	W6EBZ8	Rhizobium_phage	5.4e-93	53.0
WP_061061796.1\|1185225_1185471_+	hypothetical protein	NA	NA	NA	NA
WP_061061797.1\|1185470_1185863_+	hypothetical protein	NA	NA	NA	NA
WP_061061798.1\|1185864_1186509_+	hypothetical protein	NA	NA	NA	NA
WP_061061799.1\|1186510_1187332_+	hypothetical protein	NA	NA	NA	NA
WP_061061800.1\|1187335_1187557_+	hypothetical protein	NA	NA	NA	NA
WP_061063678.1\|1187615_1189172_+\|tail	phage tail protein	B3GAJ6	uncultured_virus	6.1e-95	44.4
WP_061061801.1\|1189218_1189650_+	hypothetical protein	NA	NA	NA	NA
WP_061061802.1\|1189659_1190031_+	hypothetical protein	NA	NA	NA	NA
WP_061061803.1\|1190212_1190650_+	hypothetical protein	NA	NA	NA	NA
WP_061063679.1\|1190697_1191126_-	hypothetical protein	J7HXA3	Pseudomonas_phage	6.9e-09	33.3
WP_071888650.1\|1191303_1191654_+	hypothetical protein	NA	NA	NA	NA
WP_061061805.1\|1191718_1194181_+	hypothetical protein	K4NZX3	Burkholderia_phage	5.5e-42	29.8
WP_061061806.1\|1194191_1195181_+	hypothetical protein	NA	NA	NA	NA
WP_061061807.1\|1195183_1196299_+	hypothetical protein	NA	NA	NA	NA
WP_061061808.1\|1196295_1196895_+\|plate	baseplate assembly protein	Q8HAB9	Salmonella_phage	2.2e-08	32.9
WP_061061809.1\|1196904_1197270_+	hypothetical protein	NA	NA	NA	NA
WP_081093861.1\|1197330_1198401_+\|plate	baseplate J/gp47 family protein	B3GAJ9	uncultured_virus	2.6e-49	39.9
WP_061061811.1\|1198401_1199064_+	hypothetical protein	NA	NA	NA	NA
WP_123809948.1\|1199128_1200886_+\|tail	phage tail protein	A9YX14	Burkholderia_phage	1.5e-41	37.9
WP_081093823.1\|1201046_1202396_-	acyltransferase	G9L6E5	Escherichia_phage	7.0e-07	24.1
WP_061061815.1\|1202570_1202933_-	hypothetical protein	NA	NA	NA	NA
WP_061061816.1\|1203449_1203689_+	hypothetical protein	NA	NA	NA	NA
WP_061061817.1\|1203691_1204015_+	hypothetical protein	A0A2H4J4R6	uncultured_Caudovirales_phage	9.7e-40	70.1
WP_013356969.1\|1204175_1205324_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.5e-90	46.4
1204147:1204167	attR	NA	NA	NA	NA
WP_009091760.1\|1205323_1205656_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	5.7e-11	36.3
WP_071888652.1\|1205681_1207529_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_013356971.1\|1207539_1208508_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.1e-45	40.3
WP_061061819.1\|1208567_1209146_-	DUF3251 domain-containing protein	NA	NA	NA	NA
WP_033782154.1\|1209162_1209600_-	peptidoglycan-binding protein LysM	G3MBQ1	Bacillus_virus	2.5e-06	51.9
WP_009091750.1\|1209786_1210236_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_013356974.1\|1210239_1211340_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	2.0e-47	34.3
WP_013356975.1\|1211430_1211901_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.7e-30	48.0

DBSCAN-SWA_3

1996305 : 2010155

Tupanvirus(11.11%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061062333.1\|1996305_1998234_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.4e-125	36.8
WP_033732471.1\|1998237_1998789_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.7e-15	32.9
WP_004157374.1\|1998888_1999086_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_003853267.1\|1999130_1999487_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_106120997.1\|1999609_1999654_+	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_013357682.1\|1999801_2000785_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	2.9e-34	37.6
WP_061062334.1\|2000799_2003187_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	1.2e-09	32.0
WP_003853259.1\|2003191_2003494_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.3e-13	40.0
WP_061062335.1\|2003673_2004657_+	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_061062336.1\|2004707_2005253_+	glutathione peroxidase	A0A1S7DM81	Molluscum_contagiosum_virus	7.7e-13	37.4
WP_061062337.1\|2005253_2006003_+	vitamin B12 ABC transporter ATP-binding protein BtuD	W5SAS9	Pithovirus	8.7e-07	26.9
WP_013357687.1\|2006071_2006530_+	C40 family peptidase	A0A217EQL1	Bacillus_phage	5.5e-12	37.5
WP_061062338.1\|2006824_2007571_+	EAL domain-containing protein	NA	NA	NA	NA
WP_061062339.1\|2007650_2009102_+	YdiU family protein	NA	NA	NA	NA
WP_061062340.1\|2009108_2010155_-	3-deoxy-7-phosphoheptulonate synthase	S4W5F1	Pandoravirus	5.5e-84	49.7

DBSCAN-SWA_4

2454976 : 2508411

Erwinia_phage(26.67%)

integrase,holin,tRNA,plate,tail,protease

attL 2486584:2486614|attR 2516511:2516541

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061062629.1\|2454976_2455675_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_061062630.1\|2455719_2457636_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	6.3e-86	32.2
WP_061062631.1\|2457885_2458623_-	carbonic anhydrase family protein	NA	NA	NA	NA
WP_013358089.1\|2459262_2459430_-	hypothetical protein	NA	NA	NA	NA
WP_061062632.1\|2459772_2460132_+	hypothetical protein	NA	NA	NA	NA
WP_061062633.1\|2460199_2460544_+	RidA family protein	NA	NA	NA	NA
WP_013358092.1\|2460556_2460751_-	YoaH family protein	NA	NA	NA	NA
WP_061062634.1\|2460861_2462241_+	aminodeoxychorismate synthase component 1	A0A0B5J984	Pandoravirus	4.9e-40	32.7
WP_061062635.1\|2462224_2462788_+	CoA pyrophosphatase	NA	NA	NA	NA
WP_061062636.1\|2462973_2464338_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_061062637.1\|2464562_2466125_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
WP_061062638.1\|2466261_2467860_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	8.3e-39	44.4
WP_061062639.1\|2468369_2469332_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA
WP_033733019.1\|2469395_2470196_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA
WP_061062640.1\|2470211_2471057_+	PTS mannose transporter subunit IID	NA	NA	NA	NA
WP_061062641.1\|2471148_2471607_+	DUF986 domain-containing protein	NA	NA	NA	NA
WP_061062642.1\|2471603_2472413_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA
WP_003852684.1\|2472550_2472760_-	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	5.9e-22	76.6
WP_061062643.1\|2473412_2474417_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_061062644.1\|2474435_2474708_-	YebO family protein	NA	NA	NA	NA
WP_033732884.1\|2474920_2475157_+	membrane protein	NA	NA	NA	NA
WP_061062645.1\|2475187_2475979_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_061062646.1\|2476165_2477530_+	MFS transporter	NA	NA	NA	NA
WP_003852678.1\|2477879_2478761_-\|protease	protease HtpX	NA	NA	NA	NA
WP_061062647.1\|2479005_2481045_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	7.2e-88	34.7
WP_061062648.1\|2481064_2481769_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_061062649.1\|2481865_2482366_-	GAF domain-containing protein	NA	NA	NA	NA
WP_061062650.1\|2482580_2483825_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_061062651.1\|2483793_2486427_+	PqiB family protein	NA	NA	NA	NA
2486584:2486614	attL	NA	NA	NA	NA
WP_192951243.1\|2486775_2488242_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_061062653.1\|2488243_2488891_-	metallophosphoesterase	K7P6H8	Enterobacteria_phage	3.9e-56	48.1
WP_061062654.1\|2489159_2489372_-	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_061062655.1\|2489518_2490868_-	MFS transporter	NA	NA	NA	NA
WP_013358119.1\|2491003_2493034_-\|holin	choline transporter	A0A2I7QNT1	Vibrio_phage	4.4e-21	26.2
WP_061062656.1\|2493289_2493883_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_061062657.1\|2493897_2495370_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_061062658.1\|2495393_2497076_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	4.2e-57	30.7
WP_061062659.1\|2497504_2497855_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA
WP_061062660.1\|2497841_2498171_+	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA
WP_061062661.1\|2498371_2499514_+	acyltransferase	Q6QI96	Burkholderia_phage	6.1e-36	31.2
WP_013358126.1\|2499677_2499938_+	hypothetical protein	NA	NA	NA	NA
WP_061062662.1\|2500054_2500240_+	hypothetical protein	NA	NA	NA	NA
WP_192951244.1\|2500336_2500474_-	hypothetical protein	NA	NA	NA	NA
WP_061062663.1\|2500689_2501712_-	alcohol dehydrogenase AdhP	A0A2K9L339	Tupanvirus	5.7e-25	25.9
WP_105399964.1\|2502618_2503119_+\|plate	baseplate J/gp47 family protein	F1BUP3	Erwinia_phage	1.7e-67	82.5
WP_061062664.1\|2503111_2503720_+\|tail	phage tail protein I	F1BUP2	Erwinia_phage	5.3e-95	81.7
WP_061062665.1\|2503716_2504760_+\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	3.3e-121	65.1
WP_061062666.1\|2505404_2505845_-	hypothetical protein	NA	NA	NA	NA
WP_061062667.1\|2505862_2506396_-	hypothetical protein	NA	NA	NA	NA
WP_069026604.1\|2507025_2507241_+	ogr/Delta-like zinc finger family protein	F1BUT0	Erwinia_phage	7.4e-28	77.8
WP_061062669.1\|2507346_2508411_+\|integrase	tyrosine-type recombinase/integrase	A0A0M4S6G4	Salmonella_phage	8.0e-115	56.0
2516511:2516541	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3269979 : 3281395

Enterobacteria_phage(50.0%)

integrase

attL 3266292:3266307|attR 3280099:3280114

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3266292:3266307	attL	NA	NA	NA	NA
WP_061063146.1\|3269979_3271176_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	2.1e-103	45.5
WP_071888722.1\|3271192_3272059_+	HAD family hydrolase	NA	NA	NA	NA
WP_061063147.1\|3272055_3272664_+	hypothetical protein	NA	NA	NA	NA
WP_123809966.1\|3272732_3274679_-	ATP-binding protein	A0A2H4J2R8	uncultured_Caudovirales_phage	1.1e-125	38.8
WP_061063149.1\|3275014_3275266_-	ogr/Delta-like zinc finger family protein	F1BUT0	Erwinia_phage	1.3e-15	63.8
WP_061063150.1\|3275262_3275979_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.7e-12	26.4
WP_061063151.1\|3276500_3276758_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	6.4e-18	57.0
WP_061063152.1\|3276754_3277003_+	hypothetical protein	NA	NA	NA	NA
WP_071888687.1\|3277016_3277544_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	4.4e-29	67.0
WP_061063154.1\|3277540_3277807_+	hypothetical protein	NA	NA	NA	NA
WP_061063155.1\|3277793_3278135_+	DUF5375 family protein	NA	NA	NA	NA
WP_105399990.1\|3278149_3280465_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	4.4e-259	60.4
3280099:3280114	attR	NA	NA	NA	NA
WP_061063156.1\|3280618_3281395_-	FAD-dependent thymidylate synthase	A0A166Y9A6	Gordonia_phage	1.3e-29	39.0

DBSCAN-SWA_6

3606519 : 3691394

Salmonella_phage(57.14%)

portal,capsid,coat,terminase,integrase,tRNA,plate,head,tail,lysis

attL 3658779:3658830|attR 3693574:3693625

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061063357.1\|3606519_3607089_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_061063358.1\|3607111_3607627_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_061063359.1\|3607652_3608348_+	molecular chaperone	NA	NA	NA	NA
WP_061063360.1\|3608355_3610803_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_061063361.1\|3610799_3611777_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_061063362.1\|3611773_3613096_-	MFS transporter	Q6JIH2	Burkholderia_virus	2.4e-60	35.7
WP_061063363.1\|3613332_3613755_-	TonB system transport protein ExbD	NA	NA	NA	NA
WP_192951259.1\|3613761_3614484_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA
WP_061063365.1\|3614833_3615805_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_061063366.1\|3615854_3616361_+	TRAP transporter small permease	NA	NA	NA	NA
WP_061063367.1\|3616375_3617662_+	TRAP transporter large permease	NA	NA	NA	NA
WP_061063368.1\|3617794_3618994_+	cystathionine beta-lyase	NA	NA	NA	NA
WP_033733897.1\|3619160_3619823_+	DedA family protein	NA	NA	NA	NA
WP_061063369.1\|3619853_3620762_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_061063370.1\|3620965_3621790_+	2,5-didehydrogluconate reductase DkgA	A0A2H4PQR8	Staphylococcus_phage	1.4e-61	45.2
WP_033733900.1\|3621881_3623312_-	cell division protein FtsP	NA	NA	NA	NA
WP_061063371.1\|3623454_3624192_-	1-acylglycerol-3-phosphate O-acyltransferase	NA	NA	NA	NA
WP_061063372.1\|3624237_3626511_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	3.1e-87	35.5
WP_061063373.1\|3626703_3627468_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_061063374.1\|3627634_3628216_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_013359050.1\|3628264_3628573_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_061063375.1\|3628918_3629818_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_061063376.1\|3629911_3631807_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	7.6e-92	34.7
WP_061063377.1\|3631856_3632438_-	esterase YqiA	NA	NA	NA	NA
WP_061063378.1\|3632441_3633269_-	3',5'-cyclic-AMP phosphodiesterase	NA	NA	NA	NA
WP_061063379.1\|3633311_3633737_-	DUF1249 family protein	NA	NA	NA	NA
WP_061063380.1\|3633733_3634369_-	ADP-ribose diphosphatase	NA	NA	NA	NA
WP_061063381.1\|3634582_3636049_+	outer membrane channel protein TolC	NA	NA	NA	NA
WP_033733914.1\|3636191_3636863_+	DUF1190 family protein	A0A173GEW8	Erwinia_phage	1.3e-41	47.1
WP_061063382.1\|3636870_3638031_+	glutathionylspermidine synthase family protein	B2ZXR7	Ralstonia_phage	3.6e-84	43.4
WP_061063383.1\|3638084_3638870_-	4,5-DOPA dioxygenase extradiol	NA	NA	NA	NA
WP_013359061.1\|3639106_3639763_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.1e-42	43.6
WP_061063384.1\|3640202_3640592_+	accessory factor UbiK family protein	NA	NA	NA	NA
WP_061063385.1\|3640630_3642055_-	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	A0A1B1IUK5	uncultured_Mediterranean_phage	1.8e-37	29.1
WP_061063386.1\|3642125_3644978_-	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA
WP_061063387.1\|3645011_3646322_-	inorganic triphosphatase	NA	NA	NA	NA
WP_061063388.1\|3646595_3647216_+	SH3 domain-containing protein	NA	NA	NA	NA
WP_061063771.1\|3647374_3648607_+	multifunctional CCA addition/repair protein	K4IEX3	Salmonella_phage	1.4e-83	44.6
WP_003848438.1\|3648622_3649441_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_061063389.1\|3649632_3649992_-	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA
WP_061063390.1\|3650100_3650706_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_061063391.1\|3650735_3651749_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.7e-106	58.3
WP_001144069.1\|3652026_3652242_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_061063392.1\|3652360_3654106_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.4e-71	36.6
WP_013359071.1\|3654602_3656444_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
WP_061063393.1\|3656518_3657037_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_061063394.1\|3657033_3657618_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
3658779:3658830	attL	NA	NA	NA	NA
WP_123809968.1\|3658948_3659128_+	hypothetical protein	NA	NA	NA	NA
WP_071888693.1\|3659346_3659565_-	ogr/Delta-like zinc finger family protein	E5G6Q4	Salmonella_phage	3.1e-21	69.1
WP_061063395.1\|3659631_3660732_-	phage late control D family protein	E5G6Q3	Salmonella_phage	3.9e-149	72.9
WP_061063396.1\|3660728_3661214_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.7e-57	82.7
WP_061063397.1\|3661210_3664246_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	2.1e-128	41.4
WP_071888694.1\|3664238_3664379_-\|tail	GpE family phage tail protein	O80316	Escherichia_phage	4.2e-08	56.1
WP_061063398.1\|3664375_3664684_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	2.7e-31	68.6
WP_061063399.1\|3664740_3665256_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	3.7e-81	86.0
WP_061063400.1\|3665268_3666438_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	6.4e-198	88.7
WP_061063401.1\|3666556_3667156_-\|tail	tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	5.5e-36	43.9
WP_061063402.1\|3667155_3668412_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	1.0e-121	50.2
WP_061063403.1\|3668408_3669020_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	6.3e-88	74.5
WP_061063404.1\|3669016_3669931_-\|plate	baseplate J/gp47 family protein	A0A1S6KZY6	Salmonella_phage	5.7e-101	65.2
WP_061063405.1\|3669917_3670274_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	5.0e-37	63.2
WP_061063772.1\|3670270_3670849_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.9e-70	69.1
WP_123809969.1\|3670946_3671651_+	hypothetical protein	NA	NA	NA	NA
WP_061063407.1\|3671638_3672094_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	7.8e-43	61.6
WP_061063408.1\|3672086_3672518_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.2e-56	75.7
WP_061063409.1\|3672613_3673042_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	1.1e-33	56.8
WP_061063410.1\|3673038_3673413_-	hypothetical protein	NA	NA	NA	NA
WP_061063411.1\|3673414_3673924_-	lysozyme	E5G6N1	Salmonella_phage	1.2e-71	76.2
WP_060680980.1\|3673904_3674117_-	hypothetical protein	E5G6N0	Salmonella_phage	1.4e-18	63.2
WP_061063412.1\|3674120_3674324_-\|tail	tail protein X	E5G6M9	Salmonella_phage	1.4e-28	83.6
WP_061063413.1\|3674323_3674788_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	2.1e-59	69.5
WP_061063414.1\|3674887_3675532_-	hypothetical protein	E5G6M7	Salmonella_phage	6.0e-81	72.2
WP_061063415.1\|3675535_3676753_-\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	1.0e-137	70.7
WP_061063416.1\|3676797_3677655_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	9.4e-82	58.6
WP_061063417.1\|3677797_3679564_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	8.2e-306	85.2
WP_061063418.1\|3679563_3680607_+\|portal	phage portal protein	E5G6M3	Salmonella_phage	4.3e-161	78.9
WP_061063419.1\|3680662_3681358_-	hypothetical protein	NA	NA	NA	NA
WP_061063420.1\|3681377_3682442_-	hypothetical protein	NA	NA	NA	NA
WP_061063421.1\|3682438_3683503_-	hypothetical protein	NA	NA	NA	NA
WP_192951260.1\|3683769_3684087_+	hypothetical protein	NA	NA	NA	NA
WP_061063423.1\|3684101_3684341_-	DinI-like family protein	A0A1S6L014	Salmonella_phage	4.0e-22	65.3
WP_061063424.1\|3684353_3684542_-	hypothetical protein	A0A1S6L006	Salmonella_phage	3.4e-21	83.3
WP_105399975.1\|3684711_3687081_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	80.6
WP_061063426.1\|3687080_3687881_-	DNA adenine methylase	E5G6L8	Salmonella_phage	2.6e-89	63.5
WP_061063427.1\|3687877_3688105_-	TraR/DksA family transcriptional regulator	F1BUS2	Erwinia_phage	9.6e-18	61.1
WP_061063428.1\|3688104_3688332_-	DUF2732 domain-containing protein	F1BUS3	Erwinia_phage	1.6e-12	53.3
WP_061063429.1\|3688401_3688740_-	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	1.6e-29	58.9
WP_071888697.1\|3688703_3688892_-	DUF2724 domain-containing protein	F1BUS5	Erwinia_phage	4.7e-10	57.9
WP_061063430.1\|3688895_3689405_-	phage regulatory CII family protein	F1BUS6	Erwinia_phage	1.2e-60	70.8
WP_061063431.1\|3689439_3689676_-	hypothetical protein	NA	NA	NA	NA
WP_061063432.1\|3689765_3690371_+	phage repressor protein CI	F1BUN8	Cronobacter_phage	2.2e-29	38.2
WP_061063433.1\|3690380_3691394_+\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	8.2e-117	62.3
3693574:3693625	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP014126

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

16603 : 23305

Morganella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072124008.1\|16603_17053_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-26	50.8
WP_061060477.1\|17508_18189_-	SOS response-associated peptidase family protein	A0A2H4J5W2	uncultured_Caudovirales_phage	5.5e-109	79.9
WP_061060478.1\|18326_18707_+	hypothetical protein	A0A1W6JNS2	Morganella_phage	3.1e-13	38.2
WP_061060479.1\|18706_19969_+	translesion error-prone DNA polymerase V subunit UmuC	A0A1W6JNT0	Morganella_phage	7.0e-134	56.7
WP_061060480.1\|20043_20832_-	hypothetical protein	NA	NA	NA	NA
WP_061060481.1\|21443_22088_+	DNA methylase	A0A2K9VH43	Faecalibacterium_phage	1.4e-32	40.3
WP_061060482.1\|22123_22354_+	hypothetical protein	NA	NA	NA	NA
WP_061060483.1\|22804_23305_+	antirestriction protein ArdA	A0A1I9S7Y0	Rhodococcus_phage	2.4e-13	33.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014129

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP014126

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection