CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014065	Achromobacter xylosoxidans strain FDAARGOS_162 chromosome, complete genome	2 crisprs	csa3,WYL,RT,DEDDh,DinG	0	0	8	0
NZ_CP014066	Achromobacter xylosoxidans strain FDAARGOS_162 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014065_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014065_1

1043585-1043711

Orphan

Consensus_repeat	Method
GCCCCCACGCCGCGCGCGCTTCGCACGCTAGCTGCCCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014065_1

>merge|NZ_CP014065|1|1043585-1043711|CRISPRCasFinder
GCCCCCACGCCGCGCGCGCTTCGCACGCTAGCTGCCCCCCAAGGGGGCTGCCCGCCCTTGGGGCGGCCCGGCGGGCGGAAGGAACGGGCCCCCACGCCGCGCGCGCTTCGCGCGCTAGCTGCCCCCC

>NZ_CP014065|1|1|1043585-1043711|CRISPRCasFinder
GCCCCCACGCCGCGCGCGCTTCGCACGCTAGCTGCCCCCC	AAGGGGGCTGCCCGCCCTTGGGGCGGCCCGGCGGGCGGAAGGAACGG
GCCCCCACGCCGCGCGCGCTTCGCGCGCTAGCTGCCCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014065.1\|WP_054419186.1\|1045215_1046229_-\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|225546
NZ_CP014065.1\|WP_054420023.1\|1041468_1043007_+\|DUF1254-domain-containing-protein	unknown	unknown	gnl\|CDD\|227659
NZ_CP014065.1\|WP_054518921.1\|1030169_1030709_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP014065.1\|WP_054419205.1\|1048600_1049506_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|183055
NZ_CP014065.1\|WP_006227327.1\|1048292_1048508_-\|TOBE-domain-containing-protein	unknown	unknown	gnl\|CDD\|226113
NZ_CP014065.1\|WP_049070767.1\|1047009_1047954_-\|beta-propeller-fold-lactonase-family-protein	unknown	unknown	gnl\|CDD\|274824
NZ_CP014065.1\|WP_006387310.1\|1050381_1051044_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP014065.1\|WP_054420012.1\|1035514_1036450_-\|formate-dehydrogenase-accessory-protein-FdhE	unknown	unknown	gnl\|CDD\|377247
NZ_CP014065.1\|WP_054419209.1\|1051881_1053111_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173852
NZ_CP014065.1\|WP_054419187.1\|1046231_1047026_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213022
NZ_CP014065.1\|WP_054420021.1\|1043084_1043582_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NZ_CP014065.1\|WP_104010508.1\|1030772_1031804_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|182223
NZ_CP014065.1\|WP_054518923.1\|1032117_1034055_-\|selenocysteine-specific-translation-elongation-factor	unknown	unknown	gnl\|CDD\|182508
NZ_CP014065.1\|WP_054419207.1\|1051043_1051853_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236863
NZ_CP014065.1\|WP_054518924.1\|1034051_1035512_-\|L-seryl-tRNA(Sec)-selenium-transferase	unknown	unknown	gnl\|CDD\|235278
NZ_CP014065.1\|WP_146074679.1\|1038127_1041196_-\|formate-dehydrogenase-N-subunit-alpha	unknown	unknown	gnl\|CDD\|273689
NZ_CP014065.1\|WP_054419611.1\|1043784_1044915_-\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP014065.1\|WP_104010509.1\|1049531_1050365_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270317
NZ_CP014065.1\|WP_049051939.1\|1036577_1037225_-\|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl\|CDD\|182608
NZ_CP014065.1\|WP_054420010.1\|1037217_1038117_-\|formate-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|273705

Protein	Function_ID	Function_description	E-value
NZ_CP014065.1\|WP_054419186.1\|1045215_1046229_-\|sterol-desaturase-family-protein	gnl\|CDD\|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	2.11307e-30
NZ_CP014065.1\|WP_054420023.1\|1041468_1043007_+\|DUF1254-domain-containing-protein	gnl\|CDD\|227659	COG5361, COG5361, Uncharacterized conserved protein [Function unknown].	9.20861e-69
NZ_CP014065.1\|WP_054518921.1\|1030169_1030709_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	6.19125e-37
NZ_CP014065.1\|WP_054419205.1\|1048600_1049506_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|183055	PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional.	1.92821e-112
NZ_CP014065.1\|WP_006227327.1\|1048292_1048508_-\|TOBE-domain-containing-protein	gnl\|CDD\|226113	COG3585, MopI, Molybdopterin-binding protein [Coenzyme metabolism].	8.1723e-19
NZ_CP014065.1\|WP_049070767.1\|1047009_1047954_-\|beta-propeller-fold-lactonase-family-protein	gnl\|CDD\|274824	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.	1.5059e-25
NZ_CP014065.1\|WP_006387310.1\|1050381_1051044_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	3.22229e-91
NZ_CP014065.1\|WP_054420012.1\|1035514_1036450_-\|formate-dehydrogenase-accessory-protein-FdhE	gnl\|CDD\|377247	pfam04216, FdhE, Protein involved in formate dehydrogenase formation. The function of these proteins is unknown. They may possibly be involved in the formation of formate dehydrogenase.	1.48864e-134
NZ_CP014065.1\|WP_054419209.1\|1051881_1053111_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173852	cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.	8.45903e-125
NZ_CP014065.1\|WP_054419187.1\|1046231_1047026_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213022	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes many rhizobial NodB chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like proteins, mainly from bacteria and eukaryotes, such as chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan. All members of this family contain a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold with 6- or 7 strands. Their catalytic activity is dependent on the presence of a divalent cation, preferably cobalt or zinc, and they employ a conserved His-His-Asp zinc-binding triad closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. Several family members show diversity both in metal ion specificities and in the residues that coordinate the metal.	3.27301e-32
NZ_CP014065.1\|WP_054420021.1\|1043084_1043582_+\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	7.23644e-66
NZ_CP014065.1\|WP_104010508.1\|1030772_1031804_-\|glycosyltransferase	gnl\|CDD\|182223	PRK10073, PRK10073, putative glycosyl transferase; Provisional.	5.62732e-49
NZ_CP014065.1\|WP_054518923.1\|1032117_1034055_-\|selenocysteine-specific-translation-elongation-factor	gnl\|CDD\|182508	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional.	0
NZ_CP014065.1\|WP_054419207.1\|1051043_1051853_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	9.72508e-129
NZ_CP014065.1\|WP_054518924.1\|1034051_1035512_-\|L-seryl-tRNA(Sec)-selenium-transferase	gnl\|CDD\|235278	PRK04311, PRK04311, selenocysteine synthase; Provisional.	0
NZ_CP014065.1\|WP_146074679.1\|1038127_1041196_-\|formate-dehydrogenase-N-subunit-alpha	gnl\|CDD\|273689	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit. This model describes a subset of formate dehydrogenase alpha chains found mainly in proteobacteria but also in Aquifex. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase (pfam01568 and pfam00384, respectively). The holo-enzyme also contains beta and gamma subunits of 32 and 20 kDa. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The electrons are utilized mainly in the nitrate respiration by nitrate reductase. In E. coli and Salmonella, there are two forms of the formate dehydrogenase, one induced by nitrate which is strictly anaerobic (fdn), and one incuced during the transition from aerobic to anaerobic growth (fdo). This subunit is one of only three proteins in E. coli which contain selenocysteine. This model is well-defined, with a large, unpopulated trusted/noise gap. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	0
NZ_CP014065.1\|WP_054419611.1\|1043784_1044915_-\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	8.78881e-25
NZ_CP014065.1\|WP_104010509.1\|1049531_1050365_-\|hypothetical-protein	gnl\|CDD\|270317	cd13599, PBP2_lipoprotein_Gna1946, The membrane-associated lipoprotein Gna1946 from Neisseria meningitidis; the type 2 periplasmic binding protein fold. Gna1946 shares significant structural and sequence homology with the periplasmic substrate-binding domain of ATP-binding cassette (ABC) transporter involved in uptake of methionine (MetQ). The members of the MetQ-like family include the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum, the membrane-associated lipoprotein-9 GmpC from Staphylococcus aureus, and Toll-like receptor 2-activating lipoprotein IlpA from Vibrio vulnificus. They all function as a receptor for methionine. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.	2.17283e-106
NZ_CP014065.1\|WP_049051939.1\|1036577_1037225_-\|formate-dehydrogenase-subunit-gamma	gnl\|CDD\|182608	PRK10639, PRK10639, formate dehydrogenase cytochrome b556 subunit.	1.67498e-72
NZ_CP014065.1\|WP_054420010.1\|1037217_1038117_-\|formate-dehydrogenase-subunit-beta	gnl\|CDD\|273705	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing. This model represents the beta subunit of the gamma-proteobacterial formate dehydrogenase. This subunit contains four 4Fe-4S clusters and is involved in transmitting electrons from the alpha subunit (TIGR01553) at the periplasmic space to the gamma subunit which spans the cytoplasmic membrane. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	5.69583e-157

>NZ_CP014065.1|WP_054420021.1|1043084_1043582_+|acyl-CoA-thioesterase
MDEAFSHQLSMTILMTPDMANFSGNVHGGTILKYLDQVAYACASRYAGQYVVTLSVDQVVFREPIHVGELVTFLAAVNYTGRTSMEIGIKVVTEDIRKKLVRHTNSCYFTMVAVDDNGAPTAVPPLAPRNLEEKQRFEAARLRRELRQEMERRHDEIKRETTHEG
>NZ_CP014065.1|WP_054420023.1|1041468_1043007_+|DUF1254-domain-containing-protein
MRRFAPLVLSLSLAAHGLSPAPAVAAPAPTPAAAATESAREAAMEGYLYFYPLLTLDLTRRQFTHPSQGGLGAPANTFLHTRALPRPGAATPWGNPDMLRSTAWIDLSAGPVVLSVPDSQGRPYTLTLLDLWNEAFATLGKRSTGTARGNTAIVPPGWSGTLPSGMPRIDAPTAYVWARSLVQTDGPADYPAVHALQDGFTLTPLAQWNLPPQSQRIKADPSLDLKTPVREQVESMPTDAFFTYAAELLRRNPAHATDQPVLAKLRRVGLIPGRPFDFDKLDHPVKQGLRRGLREARERMLAAAGVSLASVNGWQRETASVGVYGNAYLRRALSAQAQPGAGLPEDLSALLLAADSQGRPLDGAHRYTLHFDSGQLPPAGARWSLAAYDAQGLPVANPIDRYALGERDPLQYNADGSLDLLISHAAPEPGAQANWLPVAASGPVYVLLRVYAPGPALLDGLWTPPPAVRDEPEAEPESAPEAEPRAGAATAPVATPATTPPGAPVPGPAKKP
>NZ_CP014065.1|WP_146074679.1|1038127_1041196_-|formate-dehydrogenase-N-subunit-alpha
MVNMNRRQFFKVTGTTLAGSSLALLGVAPGTAMAEVRQYKLARMTETRNTCPYCSVACGLLMYGLGDGAKNARASIMHIEGDPDHPVNRGTLCPKGAALIDFIHSPNRLKYPEYRAPGSDKWERISWDDALTRITKLMKADRDANFVEKTDDGKTVNRWLTTGMLAASASSNEVGYITHKTVRSMGMLAFDNQARVUHGPTVAGLAPTFGRGAMTNHWVDIKNADVVLIMGGNAAEAHPCGFKWVTEAKAHNKAKLIVVDPRFTRSASVADFYAPIRTGTDIIFLGGVIKYLLDHDKIQHEYVRNYTDFSYIVREDFAFDAGLYSGYNAEKRTYDKASWDYERGDDGYVKTDPTLAHPRSVYQLLKKHYSRYTEEMVERVCGTPRDKFLKVCEMLASTATTDRAATILYALGWTQHSIGSQIIRTGAMVQLLLGNIGIAGGGMNALRGHSNIQGLTDLGLMSNLLPGYMTLPNEPEQDYGKYIAARALKPLRPNQLSYWQNYGKFHVSLMKAWWGKAATAENNWAFDYLPKLDKLYDMLQVYELMNQGKMNGYLAQGFNPLAAAPNKAKLNAGFAKLKFLVIMDPLVTETSEFWRNAGEANDVDPKQIQTEVFRLPTTCFAEEDGALVNSGRWLQWHWKGAEPPGEAKSDIEIMSLIFTRLRKMYQEEGGKYPDPIVNLSWPYSNPQSPTAEELAKEYSGKALVDLVDPKDPTKVTRKGGEQLAGFAELRDDGSTASGCWIFAGAWGPGGNLMARRDNSDPTGIGQTLNWAWAWPANRRILYNRASCDVAGKPFNPRRSLISWNGKAWVGADIPDFKGDENPDGGMGPFIMNPEGVARFFARAGMAEGPFPEHYEPFETPLGYNPLYPKAKGVTSNPAARVFKDDLAAMGTVDKFPYVATTYRLTEHFHYWTKNVRINAILQPEQFVEISEVMAKELGIANGSRVKVSSNRGYIKAVALVTKRLRPLTIEGKTVYHVGIPIHWGFVGIAKPGFLTNTLTPFVGDGNSQTPEFKSFLVQVEKI
>NZ_CP014065.1|WP_054420010.1|1037217_1038117_-|formate-dehydrogenase-subunit-beta
MSMQSLDIKRRSATTTPPPGVREPITGSVAKLIDVSKCIGCKACQSACMEWNDLRDEIGTNVGVYDNPADLTEHSWTVMRFSEYENPRGDLEWLIRKDGCMHCEDPGCLKACPSPGAIIQYNNGIVDFHEENCIGCGYCITGCPFNVPRISKKDHKAYKCTLCSDRVAVGQEPACVKACPTGAIVFGTKDDMKQHAAERIEDLKSRGFEQAGLYDPQGVGGTHVMYVLHHADQPGLYHGLPKDPQISPMVSLWKGIAKPLGVAAMALTALAGFFHYARVGRNEVDEEDERRAEEEIRHE
>NZ_CP014065.1|WP_049051939.1|1036577_1037225_-|formate-dehydrogenase-subunit-gamma
MSDDRHHRRIKRYSPGERTNHWIIALTFILLALSGLALFHPSMFWLTNLFGGGPWTRILHPFIGLVMFFCFVVFAGHMWRHNLMTKADRQWLSQLNDVVENREDKLPEVGKYNAGQKLLFYVLILCMLGLFASGIVIWREFFAFYFPIWVVRAASVLHAVCALVLICAIIVHIYAAIWVKGSLTAMLRGYVTAGWAWKHHRAWFREQIGKQSTTK
>NZ_CP014065.1|WP_054420012.1|1035514_1036450_-|formate-dehydrogenase-accessory-protein-FdhE
MQRILPRGEIEALDHNTIPRIQLPARDSVFATRAARLRQLAVDSPVADYLLLMARLVDAQHHALRDCNAPPASEDRIALAQAHGMPPLQAVGWPRDPLWRDILRQLVDEVAGGQDVPAEALDVCAALRRALDEDTESLEDLAEAVLSEQHRGVDGAAAPFVMAALQVYWTDLASRFDEKQLPVASPFGVCPVCASLPVASVVRVGGQFEGYRYLCCSLCATQWHMVRVKCSHCEDVESVAYQAIEGRAPAIKAETCDRCHTYRKIFYQDKDLHVEPVADDLASLMLDVLVGEAGYSRASGNPLLWHGAEEE
>NZ_CP014065.1|WP_054518924.1|1034051_1035512_-|L-seryl-tRNA(Sec)-selenium-transferase
MTGFAAAADIPALDRLLNAPALAAALDTHGRTQVVAALRRHLDALRQRALAGELPRADLAEAAVAAAVDSALARAAAPRLRAVYNLTGTVLHTNLGRALLPDEAVASVLRALTTPANLEFDLDSGGRGDRDDLIDDLLCELTGAEAATVVNNNAAAVLLMLNALADRREVVVSRGELVEIGGAFRIPDIMKRAGAKLVEVGTTNRTHAADYENAIGPRTAMLMKVHCSNYAVTGFTKSVGVAEVAALAHARGLPATVDLGSGTLVDLTQFGLPREDTVRETIAAGADLVTFSGDKLLGGPQAGLLVGRADLIRKIKKNPLKRALRVGKLTLAALEPVLQLYRAPEFLAQRLTTLRLLTRPQREIQPLAERLRGVLAHAAGADYEVEAVPMFSQIGSGALPVDQLPSYGLAVRYRGKGRPGRHLDRLETRLRNLPVPVIGRIADDALWLDLRCLEARDEAAFTAQLAERLAEPSAAPSAPQSVEPRA
>NZ_CP014065.1|WP_054518923.1|1032117_1034055_-|selenocysteine-specific-translation-elongation-factor
MIVGTAGHIDHGKTTLVRALTGVDTDRLKEEKARGISIELGYAYTPLPNGDVLGFIDVPGHEKLVHTMAAGASGIDFGLLVVAADDGVMPQTREHLAILSLLGVARGAVALTKADRADPARLAAVRGEIAALAADTFLRDAPVFEVCAARVGDDGVARLKQHLDETAQALGARDGAGLFRLAVDRVFTLAGHGTVVTGTAHGGRASVGDDDADLRLMPAGTRVRVRGIHAQNQPSETGAAGQRCALNLAGIDKSAITRGDWIADARCFLPSRHVDVVLTLLPSADAPLRAWTPLHVHIGAARHVAHVVPLSADALAPGQSGWVQLVFDELVCAMPGDRYIVRNAQATRTVGGGRVLDPNAPDRKRRAPARMQWLQGVAEMLDGGGLQPLLAQAVLGLDETALQRLAGRPVRELAAPDGAIWIEPRAPQGARTLILATHWEALRARVEQALATFHQGAPDEPGPDGSRLRRMALPAAPEALWQGMLDDLQQQGRVLRNGPWLHLPGHTAALAEAEAQLAQRLLPLLAAGAYDPPWVRDLARAQGEPEERVRQVLRKLLRRGEVAQVVKDLFYHRERVAELVALAVALAGKPEGLNAAAFRDATGLGRKRAIQILEFFDRTGLTRRLRDTHVLRTDSAYLGAGQAVS
>NZ_CP014065.1|WP_104010508.1|1030772_1031804_-|glycosyltransferase
MNHVDPRAPQISVIVPVYNCERYLSEQLDALLGDAAMNLEVIAVDDGSRDRGMAILRARGARDARLRIVQQAHRGLGAARNTGLHAARGAWIAFADADDLLPASGLARWHAQAVAQDLDVLIGNAYRFTQTPAAPGAAILARQPADRILAGRDWIAHCVEAGEWPHYVCLQMIRRELIARHRLAFDPSLFHEDILWTTALALVARRIGFAREPVYGYRRNPDSITLSPSPEVRLRRGASYVRIIEALLALSRRQEFGRRVGCAITRHVLHELQCFVDLLRKDIDDPFARARLARAMLELRAWPRLARHARGVTGLRRVLKAHWRLWRMARADRAVAADVRAGR
>NZ_CP014065.1|WP_054518921.1|1030169_1030709_+|TlpA-family-protein-disulfide-reductase
MLSRRQLLQSALSLAALPAWAGAASDSALKLATGPDWAPWTAATPPLALPDLSGREQKLANWRGNVVIVSFWATWCDPCRDEIPLMSAMARRHREEGLRLVAVNVGEALGKITTFLAKWPVGGAVLHDRNSTVSKKWDAVGLPANYLVDRGGSIRHWHLGALDWKAENVSSVVTRMLRA
>NZ_CP014065.1|WP_054419611.1|1043784_1044915_-|IS481-family-transposase
MPWSPVTVNDQKSEFVALASQAGANVSELCRRFGISRKTGYKWLGRYERLGPVGLEALSRRPEHSPGRTSEALEAQVLEVRRCHPAWGGRKIAHVLLRDQGVRLAPSTVTQVLRRHGCLADTPSGAGRTWQRFEHEAPNDLWQMDFKGHFATDRQRCHPLTVIDDHSRYNIVLQAMAAERFEPVQAALLQAFSRYGLPRRINTDNGTPWAASGMDTLTRLAVWLIRLGIHLSHSRPAHPQSNGKDERFHRTFKAEVLGTRRFRDLDDAQRQFDPWRQVYNHERPHQALDMQTPAQRYRPSPRSMPKVLPPIIYAPDTLVRKVQYGGWVDLQGRQLRLSTGLRGQYVAFRPRHDEDGTFDILFCHHLLGKIDLRAMK
>NZ_CP014065.1|WP_054419186.1|1045215_1046229_-|sterol-desaturase-family-protein
MDTLSQWFGNCQQWLFETLVQPALFHLGLSNFIEDGYDATMWLLVGLLQVAVLLLVFGPLQRLRPVEPVTDRRQIGIDVLYTLIHRLGVFRLALFFTIDPFWDSIFGQLHIWGFAPFQLDQYWPGVTDQAWVSLIIYLLLFDLVDYLYHRAQHRFAWLWALHAVHHSQRQMTMWSDDRNHLLDDMLRDVVVVFVSQLVGVPPAQFVVIVAITQLAQSFSHANLRMHFGAIGERLLVSPRFHRHHHSIAYDASTPGPAGGYNFAALFPVWDVLFRSARFGVGYGPTGIHDQQPELGGRDYGQGFWSQQWLGLKRMVGRDREPAVTAPPSRPPGAAEGA
>NZ_CP014065.1|WP_054419187.1|1046231_1047026_-|polysaccharide-deacetylase-family-protein
MRRPAKRQLAAAVCLALAAQAATAAPASCDKPVYLTFDTGHMGVAPLIADVLARHHVKVTFFLANERTLTDGSSLDDQWAPWWKARAAEGHVFGSHTYDHVYWQGDLPDGKFRVKPSAGPDTGKRETWTAEQYCAEIKRSATRFTQMTGKQMLPLYRAPGGKTSPALLRAAKACGFEHVGWAPAGFLGDELPSDKYPNAKLLEQALRTIKPGDILLAHLGIWSRQDPWAPAVLEPLIEGLQRKGYCFATLDTHPAYRDWIATHH
>NZ_CP014065.1|WP_049070767.1|1047009_1047954_-|beta-propeller-fold-lactonase-family-protein
MALSAAAASAPIFVLNSLDANVSIVDPATYTELRRVPTGKEPHHLYLTPDKKSLMVANATGDSITLMDPKTGEVQRTLTGIVDPYQLQFSPDMKWFVTAANRLDHIDIYAWKPLEKGFDLTLVKRIPAGKTPSHIMIDAKSTTAYVTLQDSDQLIAIDLATQTPKWTVSVGKTPADVFLTPDQKTLLVALTGDSYVEAYDVSKGPAKLISRIKTAAGAHAFRAQGDQRHLFVSNRTANSISRIDLQTLAVVDTFPVPGGPDCMDVLADGKTLLVTSRWARKLTVVDLEQKKVVKQVNVGKSPHGVWTLNHAATR
>NZ_CP014065.1|WP_006227327.1|1048292_1048508_-|TOBE-domain-containing-protein
MSIQSINARNQFRGKIKEIILGPVVSEVDVDTPAGIVTSVITTRSVKELDLQVGTEVLAFVKATEVSVAKL
>NZ_CP014065.1|WP_054419205.1|1048600_1049506_-|ATP-binding-cassette-domain-containing-protein
MFVNPNEFELLQHLDVPGRADREPAADEVVPARAALRVTLRQLSKRYGERLVLKGLDLDIAPGEFVAVVGQSGCGKSTLLRLLAGLETPSAAQGGVPSRSPVLFDNFPQWSANSRVRMMFQDARLLPWKSVAQNVALGLPGQARAQAAEVLRQVGLGDRGGDWPAQLSGGQRQRVALARALVHRPGLLLLDEPLGALDALTRIGMQQLIEDIWRRDGFTAVLVTHDVSEAVALADRILVIDEGRVVLDERVELARPRARGSAAFAALEARVLRVVMKQEAPAAGDRPLAPVIQIRHLRLAV
>NZ_CP014065.1|WP_104010509.1|1049531_1050365_-|hypothetical-protein
MSVKRNLLSLALAAAVLSLSGAALAADPAKKEIVFGATAGPYSDQIKLGIKPILEKQGYTVRIVEFNDYVQPNFALAQGALDANAFQHIVYLQNFAAKNKLELSELVKVPTAPIAIYSRKYKSVDAAPEGVSVAVPNDPANQARALVVLQELGWIKLREGYDPLRVSEKDVAVNVKKIKLIPLEAAQLPRSLEDTDYSFVNGNFALASGLKLTEALALEKTTPTYQNLVAVRTADLDKPFVKDIAAAYASPEFLAVTEKSFAGFVKTDYQQKLAASR
>NZ_CP014065.1|WP_006387310.1|1050381_1051044_-|ABC-transporter-permease
MLDTFVQLLPELGVAVGQTFLMLGIALAASILLGGPLGVLVFLTGPGQSLDRPLAHRLLSWTVNTVRSFPFIILLVALVPFTRVIAGTSIGPVAAAVPLSFAAIPYFARLVEQCLREVPRGVIEAAHAAGASELQIVRRVLLVEARSGLVLALTVLAVSFLSYSAVAGVVGGGGIGDLAIRYGYYRFQTDVMVLTVALLVVLVQIIQFAGNTVARRIDKR
>NZ_CP014065.1|WP_054419207.1|1051043_1051853_-|ATP-binding-cassette-domain-containing-protein
MTDLSSLPEPASLPQPLIRLDAVSKSFATRAGRFDAVRDVSLSIRAGDTFGIIGKSGAGKSTLLRLINLLERPDQGTVRVGGTELTALGKPALRAARQNIGMIFQQFNLLQNETVFENVAFPLRVHGGRGREQIAARVRECLEIVGLTDKTASYPAQLSGGQKQRVAIARALASEPAVLLCDEPTSALDPETTRSVLSVLRDINKRLGVTIVIVTHELAVVRALCRHVAVMENGQVLEQAEISGAGVHLTSALGRELIREATHPYEEVA
>NZ_CP014065.1|WP_054419209.1|1051881_1053111_-|acyl-CoA-dehydrogenase-family-protein
MAKIQTDPDTARAPAAGAAPARAADDIPRAVQALADQLAATAVERDRQGGHAAAEREQIRASGLLRLSVPTPYGGAGASWSTVLAAVRTLAEADSALAHVFGFHHLQVAGVLLYGTPEQHAYFLKPTVERNLFWGNALNPLDRRVVARPELDGYRIDGVKNFSSGSVGSDLLTFSAWHKASDTALIAALPTRAESITVNPDWDAFGQRQTDSGTVRFDHVRLEPVQVLQAPGVAPTPRATLRSQVAQLIMTNLYLGIARGAFREARRYVRDDARPWFASGVQRHADDPYVQERFGEFWLRVQAAQALADVAGLRLDAALARGPSLTADERGEVAVAGAQAKVLAHRAALEVGNGLFDVTGASSTAARYGYDRYWRNARVHTLHDPVAYKIRDLGRYALLDQIPEPTAYS

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Crispr_ID: NZ_CP014065_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014065_2

1873140-1873228

Orphan

Consensus_repeat	Method
CCGGTCTGCAGGTGTCGCCCCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014065_2

>merge|NZ_CP014065|2|1873140-1873228|CRISPRCasFinder
CCGGTCTGCAGGTGTCGCCCCCTTGAGGGGGGCGCGCGCGAGCGCGTACGGGGTGGATCTCGTTCTCCGGTCTGCAGGTGTCGCCCCCT

>NZ_CP014065|2|2|1873140-1873228|CRISPRCasFinder
CCGGTCTGCAGGTGTCGCCCCCT	TGAGGGGGGCGCGCGCGAGCGCGTACGGGGTGGATCTCGTTCT
CCGGTCTGCAGGTGTCGCCCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014065.1\|WP_049076613.1\|1866104_1866440_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014065.1\|WP_054501189.1\|1885960_1886785_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380379
NZ_CP014065.1\|WP_049076597.1\|1873259_1874600_-\|short-chain-fatty-acid-transporter	unknown	unknown	gnl\|CDD\|224942
NZ_CP014065.1\|WP_054419409.1\|1883600_1884491_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176102
NZ_CP014065.1\|WP_054419414.1\|1880108_1881761_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP014065.1\|WP_035359632.1\|1870617_1871307_-\|3-oxoacid-CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|131482
NZ_CP014065.1\|WP_054419412.1\|1881738_1882920_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340913
NZ_CP014065.1\|WP_054419424.1\|1867459_1868500_-\|cyclase-family-protein	unknown	unknown	gnl\|CDD\|377240
NZ_CP014065.1\|WP_054419420.1\|1869647_1869923_-\|muconolactone-Delta-isomerase	unknown	unknown	gnl\|CDD\|213786
NZ_CP014065.1\|WP_049076594.1\|1879088_1879802_+\|7-cyano-7-deazaguanine-synthase-QueC	unknown	unknown	gnl\|CDD\|284031
NZ_CP014065.1\|WP_054419418.1\|1874785_1875721_-\|3-hydroxyacyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|235707
NZ_CP014065.1\|WP_006390035.1\|1869338_1869635_-\|YciI-family-protein	unknown	unknown	gnl\|CDD\|183800
NZ_CP014065.1\|WP_054419422.1\|1868503_1869283_-\|3-oxoadipate-enol-lactonase	unknown	unknown	gnl\|CDD\|131480
NZ_CP014065.1\|WP_049076604.1\|1866907_1867279_+\|PsiF-repeat-family-protein	unknown	unknown	gnl\|CDD\|183165
NZ_CP014065.1\|WP_020926101.1\|1871476_1872259_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|131484
NZ_CP014065.1\|WP_020926099.1\|1869976_1870621_-\|CoA-transferase-subunit-B	unknown	unknown	gnl\|CDD\|188219
NZ_CP014065.1\|WP_054419415.1\|1876069_1878916_-\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NZ_CP014065.1\|WP_054419410.1\|1882916_1883465_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NZ_CP014065.1\|WP_104010558.1\|1872309_1873038_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181044
NZ_CP014065.1\|WP_054419407.1\|1884438_1885476_-\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|235154

Protein	Function_ID	Function_description	E-value
NZ_CP014065.1\|WP_054501189.1\|1885960_1886785_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380379	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain. This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	2.31686e-40
NZ_CP014065.1\|WP_049076597.1\|1873259_1874600_-\|short-chain-fatty-acid-transporter	gnl\|CDD\|224942	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism].	2.72016e-137
NZ_CP014065.1\|WP_054419409.1\|1883600_1884491_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176102	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily. This model and hierarchy represent the the substrate-binding domain of the LysR-type transcriptional regulators that form the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, oxidative stress responses, nodule formation of nitrogen-fixing bacteria, synthesis of virulence factors, toxin production, attachment and secretion, to name a few. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.2767e-47
NZ_CP014065.1\|WP_054419414.1\|1880108_1881761_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.62219e-57
NZ_CP014065.1\|WP_035359632.1\|1870617_1871307_-\|3-oxoacid-CoA-transferase-subunit-A	gnl\|CDD\|131482	TIGR02429, 3-oxoadipate_CoA-transferase_subunit_A, 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.	1.01437e-130
NZ_CP014065.1\|WP_054419412.1\|1881738_1882920_-\|MFS-transporter	gnl\|CDD\|340913	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters. This group is composed of uncharacterized bacterial MFS-type transporters including Bacillus subtilis YcxA and YbfB. YcxA has been shown to facilitate the export of surfactin in B. subtilis. The YcxA-like group belongs to the Monocarboxylate transporter -like (MCT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.19686e-34
NZ_CP014065.1\|WP_054419424.1\|1867459_1868500_-\|cyclase-family-protein	gnl\|CDD\|377240	pfam04199, Cyclase, Putative cyclase. Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form part of the active site.	4.42893e-06
NZ_CP014065.1\|WP_054419420.1\|1869647_1869923_-\|muconolactone-Delta-isomerase	gnl\|CDD\|213786	TIGR03221, muco_delta, muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol. [Energy metabolism, Other].	1.18093e-55
NZ_CP014065.1\|WP_049076594.1\|1879088_1879802_+\|7-cyano-7-deazaguanine-synthase-QueC	gnl\|CDD\|284031	pfam06508, QueC, Queuosine biosynthesis protein QueC. This family of proteins participate in the biosynthesis of 7-carboxy-7-deazaguanine. They catalyze the conversion of 7-deaza-7-carboxyguanine to preQ0.	7.47019e-90
NZ_CP014065.1\|WP_054419418.1\|1874785_1875721_-\|3-hydroxyacyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|235707	PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated.	3.79326e-171
NZ_CP014065.1\|WP_006390035.1\|1869338_1869635_-\|YciI-family-protein	gnl\|CDD\|183800	PRK12863, PRK12863, YciI-like protein; Reviewed.	4.15377e-45
NZ_CP014065.1\|WP_054419422.1\|1868503_1869283_-\|3-oxoadipate-enol-lactonase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	8.59298e-106
NZ_CP014065.1\|WP_049076604.1\|1866907_1867279_+\|PsiF-repeat-family-protein	gnl\|CDD\|183165	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF.	5.95676e-21
NZ_CP014065.1\|WP_020926101.1\|1871476_1872259_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|131484	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. [Regulatory functions, DNA interactions].	6.91897e-126
NZ_CP014065.1\|WP_020926099.1\|1869976_1870621_-\|CoA-transferase-subunit-B	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	1.4236e-113
NZ_CP014065.1\|WP_054419415.1\|1876069_1878916_-\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NZ_CP014065.1\|WP_054419410.1\|1882916_1883465_-\|N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	2.43718e-61
NZ_CP014065.1\|WP_104010558.1\|1872309_1873038_-\|SDR-family-oxidoreductase	gnl\|CDD\|181044	PRK07577, PRK07577, SDR family oxidoreductase.	2.97399e-68
NZ_CP014065.1\|WP_054419407.1\|1884438_1885476_-\|2-isopropylmalate-synthase	gnl\|CDD\|235154	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated.	0

>NZ_CP014065.1|WP_104010558.1|1872309_1873038_-|SDR-family-oxidoreductase
MSKPTAYLVTGGSAGIGAAIIRMLLDAGHKVVNIDYRLPEHPPAGLVSYQADLTDEARTKEVAAEVTAAYDIVGLVNNAGATRPGTADTATLADLDYVVNLHLRTALILVQAALPAMRAAGFGRIVNMSSRAALGKPDRVVYSATKAGLVGLTRTLAMELGGDGITVNAIGPGPIATDLFTKSNPAGAPQTERIINSIVVKRLGTPKDVARAAMFFLSPDNGFVTGQMLYVCGGTTLGVAPI
>NZ_CP014065.1|WP_020926101.1|1871476_1872259_+|IclR-family-transcriptional-regulator
MAEQATQQPSDSYVQSFARGLSVIRAFGPDRSQMTLSEVAAVTGLTRAGARRILLTLEHLGYVTVEDRKFALTPRILELGYAYLSGTPLWNLALPYMEEVAEQTRESCSVSVLEGADIVYILRLSTHKVMTINLAVGSRLPAWVTSMGRVLLAGLPAAELDRVLAMSQIQAYTKDTVTDIGALKAILAGVRADGYACVAQELEPGLQSVAVPIVDRSGRVIAAMNVSGHANRFSREEMLATFLPPLRHAADQINHALLRR
>NZ_CP014065.1|WP_035359632.1|1870617_1871307_-|3-oxoacid-CoA-transferase-subunit-A
MISKLVASAAAALADVPDGATVMIGGFGTAGQPMELIDALLEQGAKDLVIINNNAGNGTTGLAALLGANRVRKIICSFPRQVDSQIFDGLYRSGKIELELVPQGNLAERIRAAGAGIGAFFSPTGYGTPLADGKETREINGRQYVLEYPLHADYALIKAERGDRWGNLVYRKTARNFGPIMASAARVAVAQVREVVELGTLDPETVVTPGIFVQRVVQIDAAQAAKEQQ
>NZ_CP014065.1|WP_020926099.1|1869976_1870621_-|CoA-transferase-subunit-B
MSTKLTRDQIAARVAQDIPEGAYVNLGIGLPTLVANHLPADREVILHTENGMLGMGPAPAKGEEDYDLINAGKQPVTELPGCSFFHHADSFAMMRGGHLDICVLGAFQVSQHGDLANWHTGAPDAIPAVGGAMDLAIGAKDVFVMMELQTREGQSKLVDACTYPLTGVRCVSRVYTDVAVFDIRADGVTVIDMFGETTADELLRLTGLPLKFSN
>NZ_CP014065.1|WP_054419420.1|1869647_1869923_-|muconolactone-Delta-isomerase
MLFMVQMQVNLPVDMPAAQAEKLKADEKALAQQLQRDGKWKSLWRVVGRYANVSIFDVQDNDELHALLSSLPLFPYMDIQVTALARHPSAI
>NZ_CP014065.1|WP_006390035.1|1869338_1869635_-|YciI-family-protein
MPYIIETFDKPDHQAVRQQHRAAHLEYLDANKHLLLACGAKLQDDGKDLGGGLYIVDLDTREAAQQFIDADPFAQAQLFQRVTITRWRKAYVDGTCYL
>NZ_CP014065.1|WP_054419422.1|1868503_1869283_-|3-oxoadipate-enol-lactonase
MSYADLSQARLFYVIDGPADAPVLVLSNSLGTNADMWARQVPALSKHFRVLRYDTRGHGKSSVPDGEYTFAQLGNDVAELLAHLNIERAHFCGLSMGGPTGLWLALNRPELIGKLILCNTAARIGSAEGWSARIAAVAEQTLEKMAPTLVERWLTDGYRAAEPGLSQVLVDMLRRTPDAGYSGNCAALRDADFREQVSAIKAPTLVISSTHDLAATPAQGKELAAAISGARYLELNTSHISNWEQPEAFTRAVVDFLAE
>NZ_CP014065.1|WP_054419424.1|1867459_1868500_-|cyclase-family-protein
MQRWTHRPEGSNWGDFGPDDQLGRLNLITEEQVLKGAREIRAGKTFCLSLPLDLPGGNVLNPRRHPPQLSPTRLADTPYLNFPLRNVNPDAVDVLSDDQVLLSMQYSTQWDALAHVGALFDADGDGKPELRYYNGYQAGVDVVGPADGDHTGCGCNSGGPSAALKLGVENLAQKGMQGRGVLLDLARHYGPGRTLIGHAEIMHVLKTDGIDIEPGDMLVLRTGYAEAVVAMAGKPDAEVLHTYGAALDGTDAALLQWITDSGIAAICADNYAVEAYPAREKTGPRAMLPLHHHCLFKLGLPLAELWYLKDLAEWLHANGRHRFMLTAPPLRLPHAIGSPVTPIATV
>NZ_CP014065.1|WP_049076604.1|1866907_1867279_+|PsiF-repeat-family-protein
MLSRTSQLASAIVLSACFLGAVHAQTPAAAPAPAKTPAPAATPAAKTPTPQQQRMADCNKSAEGKKGDDRKTYMSACLKGEAPPPAKQLTPQQQKMKDCNAKAGEQKLTGDKRKTFMSTCLKG
>NZ_CP014065.1|WP_049076613.1|1866104_1866440_-|hypothetical-protein
MKSALAILALLAGLTGAANAQSLYGVTLGNIQAVRDTNENQSTITGLLANQSSRAVNYVMLTFVLYDDQGREIGRVRDDDIGPLAPGQIKTIRAITPLRFAKVTALDIRAR
>NZ_CP014065.1|WP_049076597.1|1873259_1874600_-|short-chain-fatty-acid-transporter
MNKLASFFTELMRKYLPDPFVFAIALTLLTVLLAMGIEGQGIGDVTRAWGKGFWSLLAFTTQMAVILAMGYVLATAPLTDRLLNRIVSHVHKPHTAIIVATLVGGIGSYLNWGFGLVIGGIVAKKLALKVKGVHYPLIIAAAYSGFTMYGLGLSASIPVLVATPGHPTAKQMGIIPLTETIFSVPMLITSLVIIVTLPLLNAWLHPKKGEKIVEVDPAIDRDANASNAAEDMLEKGTLASKLNNSRILSLLIGALGVAYVAFHFIDGGSLDLNLINFIILFLGIILLGTPAAYVAKLTEGIKTISGIILQYPFYAGIMAIMAASGLVTTISKVFVDVATPASLPFWGLISSFVINFFAPSAGGHWVIQGPFMIDAAREIGSALNQTTMAVMLGNAWNDLVQPFWILPALALSKLKLRDVMGYTVIMMLWVGVIHITAVLAWGYLTH
>NZ_CP014065.1|WP_054419418.1|1874785_1875721_-|3-hydroxyacyl-CoA-dehydrogenase-family-protein
MDTPLQNLAVIGAGAMGSGIAALFASKGLDVVLVDPMEGALDRARAVIERQLNVYAPGQVAVVMQRIRMAPGLDAAAACDLVIEAVPENLELKRGLFAQLDALCKPEAIFATNTSGLSINAIASAVARRDRFVGTHFFTPADVIPLVEVVRNDATSEDTVARVMTTLRLGGKRPVLVRQDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALSGPLEQRDMNGIDVHYAIASYLYKDLENRTEPSDLLKSKVENGQLGAKSGQGFYTWSPERRERVLREKSAALGELAAWLNAKAGDS
>NZ_CP014065.1|WP_054419415.1|1876069_1878916_-|phosphoenolpyruvate-carboxylase
MNASRPQSDSAEPLRHDIRLLGRLLGEVIAECEGKRVFDTIETLRRTAVKFRREGNAADGKLLEQRVKHLQGSDPNSVARAFSYFLHLSNIAEDRDQNRSQRARALAGDAPARGSLRDAVQTLGRHGVTPARIRRLLADACVMPVLTAHPTEVQRKSTLDVHREIAAALVQRDNPLTPEELAELDAALLGRVATLWQTRMLRYTRLTVADEIENALSYYRSTFLQVIPRVYGDLSKLLNRDAKPFGAPPPPLEPFLRMGSWIGGDRDGNPNVDAGTLERALLRQATVLFEHYLQEVHALGAELSITTLLIAVDPALLALAEHSGDDSPHRSDEPYRRALVGVYARLAATALRLTGQDLARRSTVAAQPYGTPQELSADLAVIAASLSAHHGAPIGKLRLAGLQQAVEVFGFHLATVDLRQSSDVHERALAELFSRAGATRDGQPLDYLALDEDARVALLRAELAQARPLASPWIAYSEDTTRELAVLRAAAAGRQRYGKQAVRQTIVSHTETLSDLLEVMVLQKEAGLIAPAGQDIPPEDGLMVVPLFETIPDLQRGADIMAAWLDLPEIRERVKRAQNGAQEVMLGYSDSNKDGGFLTSNWSLYQAERALVDVFSSRHVRLRLFHGRGGSVGRGGGSSFDAILAQPPGTVAGQIRLTEQGEVIQSKYKDAEVGRWHLELLVAATLESSLAPRAEATSAEDAHMAQHGPAMSFMSETAQRSYRGLVYDTPRFAEYFFAATPIAEIAGLNIGSRPASRKKGQRIEDLRAIPWGFSWAQCRLMLTGWYGMGSAIEAYLETGAPGAPRSRRGRLAQLREMARDWPAFRTLLSNMEMVLAKSDLAIAARYAQLVPQRALREKIFGMISAEHARTLAMLKLLTRRELLADNPALQASLRERFAYIDPLNYLQVDLIRRHRAAQKSPAAEADERVQRAIHLTINGIAAGLRNSG
>NZ_CP014065.1|WP_049076594.1|1879088_1879802_+|7-cyano-7-deazaguanine-synthase-QueC
MLNHQRRALVLFSGGQDSTTCLAWALDRYAHVETVAFDYGQRHRIELDARLNVLREIRARFPQWAPRLGEDHLLDLKVLGQVGDTAMTSDRAIEMQENGLPNTFVPGRNLLFLTLAAALGYRRQLDVLVGGMCETDFSGYPDCRDDTIKAQQVALGLGLGSRVTIETPLMWIDKSETWALAKQLGGDALVETIVEESHTCYLGERGARHAWGYGCGECPACKLRRAGWDKWQAQGAA
>NZ_CP014065.1|WP_054419414.1|1880108_1881761_+|EAL-domain-containing-protein
MECVFIQGSIIMNRSRIILIFDNEFAKQGISDSLQQIGFVLNPVSLQEPAPARHAGEIQVHLCLPRDLDITIGQLRARFAHSTIIAIRHIESPAMRINALLAGADSCYDANISYSEVAAAIQSAQRKLTLCQPPAASVPRRPDAAAEPAAAEQSWRLCDNEWTLVSPGGAAVNLTPMERTVLKGMHGHPERVIRRAGFAAAGLDIVGNGRALDLVISRLKRKGVAAGMAIPIRSLRGKGYAFSATLVQDGSGASHEPTVIRKEGAVSPLLAAIQGDRLRFHYQPIVTAADLEIVGAEALLRWRVAGGETMGIDGLLREAAAPEAAQALISWSLQTIARDQARWRQAAQGAALAVNLNISPQSFARRDVVGTVLRGIAACGQASGDIRIELTEEAALHAGSADIRSTLEAFTGRGIQVWLDDFGKGYNNLEWLSTLPLTGLKLDKSIVWSAARQAEAQKVMTSICQLARDLDIVTVAQGIETEAHCRAAREAGCDLLQGFLFFRPGTGDELAAALVEQRWRRADIARGREHPAPAAALRDGGAPFSPASGR
>NZ_CP014065.1|WP_054419412.1|1881738_1882920_-|MFS-transporter
MIPPRAVVCLGLTQLVGWGVTFYLIGALGPDMAADLGWDPATLYGGFSCAIVVMALVSPLAGRAVDRWGGHRVMPAGATLAAAGCVALAAAHGLPAYFAAWTLLGVGMRLCLYDAAFASLARAAGPTARRPMSQITLFGGLASTVMWPVGHALSGWLGWRGAVLAYGALALATVPLYLALPRARYAAPVQAAGQGGAGLTRNASERRLAGLLYAVIAMLTNFLAAGNAAHLIPLLAGLGLTKALAVNVAALWGVGQFASRLADVALGSRLHPLTLTLAVAALMPLGFVLALLSGGHLVALAAYALLYGACNGLLTIARGTLPLALFDFRSYGALVGALLIPSFLLTAAAPVAYAYVVERHGSHAAMGISAGLAAAILAAALALRWRFIARTRG
>NZ_CP014065.1|WP_054419410.1|1882916_1883465_-|N-acetyltransferase
MPQPAAPTILIRDSVDADLPAIKAIYAHHVEHGTASFELEPPSIQEMRQRRAGVLEKDMPYLVAEINGEVVGYAYVTPYRPRPAYRHTVEDSVYVKAGRAGLGIGGRLLARLVERCTAAGWRQMLAVVGDSRNAASLAVHARQGFHPVGTLRSVGHKHGEWRDTVLMQRALGEGDSTPPQRP
>NZ_CP014065.1|WP_054419409.1|1883600_1884491_+|LysR-family-transcriptional-regulator
MRGLNLDALRTFAQVIELGSFSAAAERGGITQPAVSLQVRQLERRFGLKLVERVGRRAGPTAAGLELLTHIRAIDTALARAEQAMTAHASQVTGRVRLGTGATACTYLLPPLLAGLRRRFPALDVVASTGNTADMLRGLENNTLDIGLVTLPAPGRMIEATPVLEDEFVAIFPARGPLGMPDAVTPQALAALPLVLFEPGARTRGLVDDWFDAAGVAAKPVMELGSTEAMKEIVAAGLACAVLPRLAVSGAGQRASLAVRSLTPRLARTLAVVVRRDKPLSRGLRHLQEALLALRT
>NZ_CP014065.1|WP_054419407.1|1884438_1885476_-|2-isopropylmalate-synthase
MLDHPQHKYRPVQPFSRDYAERQWPARRPSAPPIWMSTDMRDGNQALIEPMDAARKLRFFEQLVAVGLKEIEVAFPSASDTDFNFVRKLIEENRIPDDVTIEVLTQSRPDLIERTFESLRGARRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADAHPETAWIYEYSPETFSLAELDFALEVCDAVSAIWRPTPANRMIINLPSTVECTTANVYADQIEWMHRRLARRDSIVLSVHPHNDRGTAVASAELAVLAGADRVEGCLFGNGERTGNVDLVTLALNLERQGIASGLDFTDMAAVRDCVQACNQLPVDVFHPYAFTSATPAALPAGAAAPG
>NZ_CP014065.1|WP_054501189.1|1885960_1886785_+|helix-turn-helix-transcriptional-regulator
MDKPKSPAASRSRKPADLDLFPYESSLRPVAALAVDYEDGHRVRRHRHRRSQLVYAISGVMVVDTDAGIWVVPPTRGVWVPAWVSHAIRMSGEPRMRTVFVEPGAAAHLPTECCVLSISPLLRELMVAAAEVPLDWQPGTRDGRLMMLLLDELKQEPVLPLHLPQPSEPRLARICRAIVRHPERQAGAADWARELGVDPKTVHRLFLRHTGMTFGRWRQQARLLAAMERLARGERVLDVALDLGYDSPSAFAAMFRKALGEPPSAFAARGTASA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1946934 : 1964726

Burkholderia_virus(25.0%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054414597.1\|1946934_1948404_+	DUF1254 domain-containing protein	M1IA53	Paramecium_bursaria_Chlorella_virus	2.8e-57	33.5
WP_054414600.1\|1948498_1949197_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_054415419.1\|1949494_1950064_+	hypothetical protein	NA	NA	NA	NA
WP_049076510.1\|1950315_1950783_+	hypothetical protein	NA	NA	NA	NA
WP_054414602.1\|1950788_1951262_+\|tail	phage tail protein	A4JX08	Burkholderia_virus	2.4e-26	44.4
WP_054414604.1\|1951261_1951552_+	DUF4035 domain-containing protein	S4TND7	Salmonella_phage	9.1e-13	48.8
WP_054414606.1\|1951609_1952911_+\|tail	phage tail tape measure protein	A0A1W6JP49	Morganella_phage	2.2e-13	29.7
WP_054414608.1\|1952913_1953252_+\|tail	phage tail protein	K7P7R1	Enterobacteria_phage	3.1e-28	49.1
WP_054414610.1\|1953256_1955899_+\|tail	tail fiber domain-containing protein	A0A0B5A596	Achromobacter_phage	6.4e-36	26.7
WP_054414612.1\|1955901_1956630_+\|tail	phage minor tail protein L	A0A2R3UA90	Siphoviridae_environmental_samples	3.0e-68	51.0
WP_054414614.1\|1956632_1957412_+	C40 family peptidase	A4JX14	Burkholderia_virus	1.9e-65	50.2
WP_049076500.1\|1957408_1958014_+\|tail	tail assembly protein	C7BGD3	Burkholderia_phage	9.4e-52	55.7
WP_054414616.1\|1958010_1961634_+	host specificity protein J	A0A2R3UA88	Siphoviridae_environmental_samples	1.3e-268	45.3
WP_144419173.1\|1961638_1962004_+	hypothetical protein	NA	NA	NA	NA
WP_054414618.1\|1961984_1962200_+	hypothetical protein	NA	NA	NA	NA
WP_054495517.1\|1962196_1962793_+\|tail	tail assembly protein	Q6JIL3	Burkholderia_virus	8.6e-50	53.3
WP_054495519.1\|1962922_1963852_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_054414621.1\|1963907_1964726_-	SDR family oxidoreductase	W8CYX9	Bacillus_phage	4.1e-10	49.3

DBSCAN-SWA_2

1998723 : 2009668

Pseudomonas_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104010566.1\|1998723_1999425_-	site-specific DNA-methyltransferase	B4UTY5	Rhizobium_phage	1.1e-32	38.8
WP_104010567.1\|1999414_2000344_-	hypothetical protein	NA	NA	NA	NA
WP_104010568.1\|2000340_2000862_-	hypothetical protein	NA	NA	NA	NA
WP_146074686.1\|2000864_2001362_-	hypothetical protein	NA	NA	NA	NA
WP_104010570.1\|2001524_2002121_-	hypothetical protein	A0A0F6SIL9	Sinorhizobium_phage	1.1e-63	58.6
WP_104010571.1\|2002147_2002660_-	single-stranded DNA-binding protein	I6NRL7	Burkholderia_virus	7.0e-40	58.7
WP_104010572.1\|2002659_2003331_-	hypothetical protein	A0A0M3LP90	Mannheimia_phage	9.1e-32	37.3
WP_104010573.1\|2003323_2004157_-	hypothetical protein	E5DV80	Deep-sea_thermophilic_phage	6.3e-14	30.5
WP_104010574.1\|2004167_2004659_-	HNH endonuclease	A5H1K2	Xanthomonas_virus	1.5e-28	45.2
WP_104010575.1\|2004666_2005767_-	hypothetical protein	Q9MC69	Pseudomonas_phage	9.1e-37	48.2
WP_104010576.1\|2005771_2005951_-	hypothetical protein	NA	NA	NA	NA
WP_104010577.1\|2006018_2006381_-	hypothetical protein	NA	NA	NA	NA
WP_104010578.1\|2006383_2006683_-	hypothetical protein	NA	NA	NA	NA
WP_104010579.1\|2006724_2007753_-	pentapeptide repeat-containing protein	A0A221SAP8	Ralstonia_phage	1.5e-17	54.8
WP_104010580.1\|2007946_2008708_+	hypothetical protein	NA	NA	NA	NA
WP_104010581.1\|2008720_2009668_-	phage repressor protein	A0A1C6ZDG7	Pseudomonas_phage	2.4e-09	27.3

DBSCAN-SWA_3

2016586 : 2043123

Burkholderia_phage(38.46%)

tail,capsid,integrase,plate,head

attL 2039134:2039147|attR 2045902:2045915

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104010591.1\|2016586_2017102_+	Rha family transcriptional regulator	A0A0P0ZFJ1	Escherichia_phage	5.4e-16	40.7
WP_104010592.1\|2017549_2018203_+	hypothetical protein	G8C7P2	Escherichia_phage	1.4e-29	40.9
WP_104010593.1\|2018202_2019798_+	TerL protein	A9YWZ6	Burkholderia_phage	3.7e-249	76.6
WP_104010594.1\|2019806_2021258_+	DUF1073 domain-containing protein	A0A0P0I486	Acinetobacter_phage	1.1e-146	58.5
WP_104010595.1\|2021148_2021988_+\|capsid	minor capsid protein	A9YWZ8	Burkholderia_phage	4.4e-68	54.6
WP_104010596.1\|2022008_2023301_+	DUF2213 domain-containing protein	A0A0P0IRE1	Acinetobacter_phage	1.5e-78	45.9
WP_104010597.1\|2023310_2023799_+	hypothetical protein	A0A0P0I8F3	Acinetobacter_phage	2.4e-34	51.9
WP_104010598.1\|2023859_2024882_+	DUF2184 domain-containing protein	A0A0N7IRF2	Acinetobacter_phage	2.5e-129	68.5
WP_104010599.1\|2024892_2025291_+	hypothetical protein	NA	NA	NA	NA
WP_104010600.1\|2025300_2025684_+	DUF4054 domain-containing protein	A9YX25	Burkholderia_phage	2.7e-36	59.8
WP_104010601.1\|2026169_2026550_+\|head,tail	head-tail adaptor	A0A2H4J1A4	uncultured_Caudovirales_phage	4.8e-30	56.9
WP_104010602.1\|2026542_2027130_+	hypothetical protein	A9YX29	Burkholderia_phage	2.0e-51	56.0
WP_104010603.1\|2027194_2028676_+	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	5.9e-132	51.4
WP_054475565.1\|2028691_2029135_+	DUF3277 family protein	A0A0P0IKY2	Acinetobacter_phage	7.9e-40	60.3
WP_104010604.1\|2029134_2029533_+	hypothetical protein	A0A0N7IRF3	Acinetobacter_phage	3.8e-09	32.9
WP_104010605.1\|2029728_2031546_+	hypothetical protein	A0A0M4REK7	Salmonella_phage	1.1e-84	33.1
WP_104010606.1\|2031542_2032115_+	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	1.6e-29	40.5
WP_104010607.1\|2032111_2032417_+	hypothetical protein	A0A0M4R5B7	Salmonella_phage	3.4e-18	43.6
WP_104010608.1\|2032420_2033344_+	hypothetical protein	A9YX04	Burkholderia_phage	7.5e-69	50.9
WP_104010609.1\|2033336_2034083_+	translation initiation factor IF-2	A9YX06	Burkholderia_phage	4.2e-78	59.3
WP_104010610.1\|2034091_2034445_+	hypothetical protein	A9YX11	Burkholderia_phage	4.8e-32	61.5
WP_104010611.1\|2034441_2035623_+\|plate	baseplate J/gp47 family protein	A9YX12	Burkholderia_phage	2.0e-130	65.1
WP_104010612.1\|2035624_2036293_+	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	2.4e-77	65.4
WP_104010613.1\|2036302_2036974_+	hypothetical protein	NA	NA	NA	NA
WP_185762524.1\|2036970_2037402_+\|tail	tail fiber assembly protein	U5P083	Shigella_phage	1.4e-17	36.7
WP_185762525.1\|2037391_2038498_-	acyltransferase	A0A2H4IZR3	uncultured_Caudovirales_phage	1.9e-18	26.5
WP_104010615.1\|2038617_2038926_+	hypothetical protein	NA	NA	NA	NA
WP_104010616.1\|2038927_2039206_+	hypothetical protein	NA	NA	NA	NA
2039134:2039147	attL	NA	NA	NA	NA
WP_104010617.1\|2039202_2039694_+	hypothetical protein	I6NSS1	Burkholderia_phage	5.3e-45	61.1
WP_185762526.1\|2039690_2040086_+	hypothetical protein	NA	NA	NA	NA
WP_104010618.1\|2040182_2040401_-	hypothetical protein	NA	NA	NA	NA
WP_104010619.1\|2040403_2041387_-\|integrase	site-specific integrase	A0A1B1P9F9	Acinetobacter_phage	5.4e-65	41.3
WP_146074691.1\|2041746_2043123_+\|integrase	integrase	NA	NA	NA	NA
2045902:2045915	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2885128 : 2939281

uncultured_Caudovirales_phage(20.69%)

transposase,portal,plate,tail,capsid,holin,integrase,terminase,tRNA,head

attL 2889997:2890016|attR 2920831:2920850

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054417190.1\|2885128_2885617_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_054417191.1\|2885826_2886405_+	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_049075429.1\|2886566_2887595_-	alcohol dehydrogenase AdhP	A0A2K9L339	Tupanvirus	1.0e-34	27.3
WP_049075427.1\|2887839_2888229_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_026383152.1\|2888353_2889151_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
2889997:2890016	attL	NA	NA	NA	NA
WP_104010684.1\|2890180_2891209_+\|integrase	site-specific integrase	A0A2D1GMX8	Marinobacter_phage	4.3e-57	39.1
WP_083827922.1\|2891205_2891424_-	hypothetical protein	NA	NA	NA	NA
WP_173361348.1\|2891482_2893312_-	DNA cytosine methyltransferase	L7TH64	Pseudomonas_virus	3.6e-179	53.9
WP_054448001.1\|2893311_2893581_-	hypothetical protein	NA	NA	NA	NA
WP_104011024.1\|2893577_2896253_-	toprim domain-containing protein	A0A077K8T2	Ralstonia_phage	3.8e-270	53.4
WP_054479074.1\|2896282_2896516_-	hypothetical protein	NA	NA	NA	NA
WP_146074700.1\|2896602_2896992_-	hypothetical protein	NA	NA	NA	NA
WP_104010687.1\|2896981_2897263_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_146074743.1\|2897553_2897958_+	helix-turn-helix domain-containing protein	A4JWR8	Burkholderia_virus	4.8e-12	44.1
WP_146074701.1\|2898016_2898301_+	hypothetical protein	NA	NA	NA	NA
WP_104010689.1\|2898431_2898722_+	hypothetical protein	NA	NA	NA	NA
WP_104010690.1\|2898733_2899819_-	late control protein	A0A2H4JAV0	uncultured_Caudovirales_phage	6.8e-85	49.8
WP_104010691.1\|2899818_2900274_-\|tail	phage tail protein	A0A2H4JG54	uncultured_Caudovirales_phage	2.1e-32	52.8
WP_104010692.1\|2900286_2903025_-\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	1.7e-169	42.2
WP_081322395.1\|2903028_2903145_-\|tail	GpE family phage tail protein	E5FFG6	Burkholderia_phage	3.0e-07	75.8
WP_104010693.1\|2903153_2903513_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	1.6e-14	42.9
WP_058664993.1\|2903534_2904050_-\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	3.8e-46	54.1
WP_104010694.1\|2904107_2905289_-\|tail	phage tail sheath protein	A0A077K9Y4	Ralstonia_phage	1.4e-147	65.2
WP_146074702.1\|2905409_2905904_-	hypothetical protein	NA	NA	NA	NA
WP_104010696.1\|2905908_2907255_-\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	5.7e-49	62.0
WP_104010697.1\|2907251_2907890_-\|tail	phage tail protein I	A0A077KER5	Ralstonia_phage	1.3e-51	56.4
WP_104010698.1\|2907873_2908791_-\|plate	baseplate J/gp47 family protein	A0A077K9X9	Ralstonia_phage	9.8e-77	55.6
WP_068980947.1\|2908792_2909134_-	GPW/gp25 family protein	E5E3V5	Burkholderia_phage	1.4e-17	53.2
WP_104010699.1\|2909145_2909781_-\|plate	phage baseplate assembly protein V	A0A077K9S0	Ralstonia_phage	6.0e-49	51.2
WP_104010700.1\|2909842_2910304_-	phage virion morphogenesis protein	Q6K1H7	Salmonella_virus	4.2e-28	50.0
WP_104010701.1\|2910296_2910800_-\|tail	phage tail protein	E5E3R4	Burkholderia_phage	8.1e-25	50.0
WP_063569185.1\|2910898_2911321_-	hypothetical protein	Q9ZXL5	Pseudomonas_virus	3.6e-10	31.5
WP_104010702.1\|2911317_2912127_-	N-acetylmuramidase family protein	A0A2H4JGJ9	uncultured_Caudovirales_phage	1.9e-76	57.0
WP_063569183.1\|2912119_2912419_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_006390739.1\|2912415_2912778_-	hypothetical protein	NA	NA	NA	NA
WP_006390738.1\|2912783_2912990_-\|tail	tail protein X	A0A2H4J946	uncultured_Caudovirales_phage	1.1e-15	59.1
WP_068953600.1\|2912989_2913460_-\|head	head completion/stabilization protein	A4PE32	Ralstonia_virus	1.6e-35	53.5
WP_104010703.1\|2913552_2914248_-	hypothetical protein	A0A2H4J948	uncultured_Caudovirales_phage	7.5e-37	40.9
WP_068953596.1\|2914250_2915258_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	1.2e-115	61.2
WP_068953593.1\|2915302_2916166_-\|capsid	GPO family capsid scaffolding protein	E5FFI7	Burkholderia_phage	9.3e-53	46.2
WP_104010704.1\|2916306_2918061_+\|terminase	terminase ATPase subunit family protein	A4JWQ1	Burkholderia_virus	1.5e-230	67.5
WP_104010705.1\|2918057_2919083_+\|portal	phage portal protein	A4JWV0	Burkholderia_virus	1.4e-127	62.4
WP_146074703.1\|2919165_2919453_-	hypothetical protein	NA	NA	NA	NA
WP_054417193.1\|2921064_2921829_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
2920831:2920850	attR	NA	NA	NA	NA
WP_054417194.1\|2921825_2923448_+	AMP-binding protein	NA	NA	NA	NA
WP_054417195.1\|2923444_2924395_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA
WP_054417220.1\|2924483_2925017_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_054417196.1\|2925107_2925842_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_054417197.1\|2925838_2927035_+	CoA transferase	NA	NA	NA	NA
WP_054417198.1\|2927106_2928078_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_049075417.1\|2928231_2928486_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_054417199.1\|2928485_2928911_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_054417200.1\|2928992_2929946_-	nitronate monooxygenase	NA	NA	NA	NA
WP_054417201.1\|2930158_2931358_+	MFS transporter	NA	NA	NA	NA
WP_167352779.1\|2931374_2931536_+	hypothetical protein	NA	NA	NA	NA
WP_054495639.1\|2931620_2934284_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_054417202.1\|2934287_2937845_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_104010707.1\|2938150_2939281_+\|transposase	IS481 family transposase	S5WIU1	Leptospira_phage	3.8e-14	32.2

DBSCAN-SWA_5

3146439 : 3175048

Pseudomonas_phage(45.83%)

capsid,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104010730.1\|3146439_3147294_+	DNA adenine methylase	Q5QF26	Pseudomonas_virus	3.1e-77	52.3
WP_104010731.1\|3147290_3148454_+	YdaU family protein	H2BD69	Pseudomonas_phage	3.2e-40	49.2
WP_104010732.1\|3148450_3148675_+	hypothetical protein	NA	NA	NA	NA
WP_104010733.1\|3148671_3149169_+	RusA family crossover junction endodeoxyribonuclease	J7I4J7	Pseudomonas_phage	1.4e-29	51.3
WP_104010734.1\|3149158_3149788_+	hypothetical protein	NA	NA	NA	NA
WP_146074706.1\|3149829_3150489_-	hypothetical protein	NA	NA	NA	NA
WP_104010735.1\|3150648_3151440_+	DNA adenine methylase	Q5ZQW7	Pseudomonas_phage	4.4e-126	78.2
WP_104010736.1\|3151449_3152058_+	hypothetical protein	A0A125RNL5	Pseudomonas_phage	1.2e-67	61.1
WP_104011029.1\|3152054_3152495_-	DUF4145 domain-containing protein	M1PSB6	Streptococcus_phage	9.6e-30	47.8
WP_104010737.1\|3152777_3153251_+	DUF2280 domain-containing protein	A0A125RNL6	Pseudomonas_phage	5.1e-37	59.6
WP_185762533.1\|3153201_3154785_+\|terminase	phage terminase large subunit	A0A291LBL3	Klebsiella_phage	1.6e-111	47.5
WP_104011030.1\|3156103_3156847_+\|capsid	minor capsid protein	I3PGT9	Xanthomonas_phage	7.5e-35	39.4
WP_104010739.1\|3156857_3157940_+	DUF2213 domain-containing protein	E5AGA6	Erwinia_phage	8.0e-54	40.1
WP_104010740.1\|3157939_3158395_+	hypothetical protein	NA	NA	NA	NA
WP_104010741.1\|3158458_3159418_+	DUF2184 domain-containing protein	A0A0N9SG07	Pseudomonas_phage	5.3e-57	37.7
WP_104010742.1\|3159417_3159780_+	hypothetical protein	NA	NA	NA	NA
WP_104010743.1\|3159782_3160157_+	DUF4054 domain-containing protein	NA	NA	NA	NA
WP_104010744.1\|3160146_3160599_+	hypothetical protein	A0A2I7R2V2	Vibrio_phage	1.4e-07	33.1
WP_104010745.1\|3160602_3160971_+	hypothetical protein	NA	NA	NA	NA
WP_104011031.1\|3161143_3161668_+	hypothetical protein	NA	NA	NA	NA
WP_104010746.1\|3161813_3162311_+	KilA-N domain-containing protein	A0A1W6JP13	Morganella_phage	5.7e-23	41.1
WP_104010747.1\|3162378_3163737_+	DUF3383 family protein	A0A0N9SJA3	Pseudomonas_phage	5.7e-81	40.0
WP_104010748.1\|3163747_3164176_+	DUF3277 family protein	NA	NA	NA	NA
WP_104010749.1\|3164175_3164661_+	hypothetical protein	NA	NA	NA	NA
WP_104010750.1\|3164803_3167107_+	tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	1.4e-23	29.3
WP_104010751.1\|3167118_3167724_+	hypothetical protein	I3PGV3	Xanthomonas_phage	2.0e-06	26.4
WP_104010752.1\|3167720_3168053_+	hypothetical protein	A0A0N9SG14	Pseudomonas_phage	2.7e-13	38.7
WP_104010753.1\|3168039_3168957_+	hypothetical protein	E5AGC0	Erwinia_phage	9.6e-40	32.9
WP_104010754.1\|3168953_3169655_+	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	3.1e-14	28.8
WP_104010755.1\|3169654_3170023_+	hypothetical protein	A0A2K9V3L8	Faecalibacterium_phage	4.9e-11	38.0
WP_104010756.1\|3170048_3171500_+	hypothetical protein	A0A0N9SH53	Pseudomonas_phage	1.0e-75	37.7
WP_104010757.1\|3171499_3172165_+	DUF2612 domain-containing protein	A0A0N9SSD8	Pseudomonas_phage	7.2e-29	36.2
WP_104010758.1\|3172165_3173452_+	hypothetical protein	NA	NA	NA	NA
WP_104010759.1\|3173464_3173887_+\|tail	tail fiber assembly protein	U5P083	Shigella_phage	1.4e-25	43.6
WP_104010760.1\|3173932_3174241_+	hypothetical protein	NA	NA	NA	NA
WP_104010761.1\|3174242_3174521_+	hypothetical protein	NA	NA	NA	NA
WP_104010762.1\|3174517_3175048_+	hypothetical protein	C8ZKR3	Pseudomonas_phage	1.0e-30	48.1

DBSCAN-SWA_6

4720090 : 4727958

Moraxella_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054417513.1\|4720090_4720678_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	1.2e-19	39.6
WP_049073455.1\|4720710_4721085_-	thioredoxin family protein	V9SJ74	Achromobacter_phage	7.1e-10	26.8
WP_049073456.1\|4721276_4722299_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_054417514.1\|4722624_4722981_+	VOC family protein	NA	NA	NA	NA
WP_049073458.1\|4723065_4724358_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	7.1e-65	36.3
WP_054417515.1\|4724466_4725498_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	7.1e-92	51.4
WP_049073460.1\|4725570_4726212_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_049073461.1\|4726390_4727149_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.2e-67	52.0
WP_171905038.1\|4727193_4727958_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.6e-32	45.8

DBSCAN-SWA_7

5936502 : 5969328

Pseudomonas_phage(28.57%)

capsid,terminase,holin,integrase,tRNA

attL 5930926:5930942|attR 5962811:5962827

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5930926:5930942	attL	NA	NA	NA	NA
WP_054518880.1\|5936502_5936994_-	hypothetical protein	I6NSS1	Burkholderia_phage	2.2e-43	58.6
WP_054508221.1\|5936993_5937293_-\|holin	phage holin family protein	E5E3W3	Burkholderia_phage	6.3e-09	40.7
WP_054508222.1\|5937294_5937639_-	hypothetical protein	A4JWU2	Burkholderia_virus	1.5e-22	57.9
WP_054482832.1\|5937727_5938750_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JE37	uncultured_Caudovirales_phage	8.2e-24	32.3
WP_054518879.1\|5938752_5939109_-	hypothetical protein	NA	NA	NA	NA
WP_054518878.1\|5940357_5941692_-	hypothetical protein	A0A0A8J8U5	Ralstonia_phage	3.8e-29	35.3
WP_054518877.1\|5941691_5942357_-	DUF2612 domain-containing protein	A0A0N9SSD8	Pseudomonas_phage	1.7e-30	36.8
WP_054518876.1\|5942356_5943808_-	hypothetical protein	A0A0N9SH53	Pseudomonas_phage	5.3e-77	37.1
WP_054432394.1\|5943832_5944201_-	hypothetical protein	A0A0N7GFC5	Pseudomonas_phage	2.7e-17	45.5
WP_054518875.1\|5944200_5944899_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.3e-12	31.1
WP_054518874.1\|5944895_5945813_-	hypothetical protein	E5AGC0	Erwinia_phage	1.3e-36	30.9
WP_054518873.1\|5945799_5946132_-	hypothetical protein	NA	NA	NA	NA
WP_054432397.1\|5946128_5946749_-	hypothetical protein	I3PGV3	Xanthomonas_phage	3.2e-07	29.4
WP_054518872.1\|5946757_5949229_-	tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	1.5e-23	29.1
WP_054518871.1\|5949374_5949854_-	hypothetical protein	NA	NA	NA	NA
WP_054432400.1\|5949853_5950282_-	DUF3277 family protein	A0A2H4P8K8	Pseudomonas_phage	2.1e-13	31.0
WP_054518870.1\|5950297_5951656_-	DUF3383 family protein	A0A0N9SJA3	Pseudomonas_phage	5.7e-81	39.7
WP_054418237.1\|5951722_5952247_-	hypothetical protein	NA	NA	NA	NA
WP_104010950.1\|5952372_5952786_-	hypothetical protein	NA	NA	NA	NA
WP_054418242.1\|5952790_5953243_-	hypothetical protein	E5AGB1	Erwinia_phage	1.6e-08	35.4
WP_054418244.1\|5953220_5953607_-	DUF4054 domain-containing protein	NA	NA	NA	NA
WP_054418246.1\|5953609_5953993_-	hypothetical protein	NA	NA	NA	NA
WP_054461068.1\|5953992_5954952_-	DUF2184 domain-containing protein	A0A0N9SG07	Pseudomonas_phage	3.7e-58	38.8
WP_054418250.1\|5955013_5955469_-	hypothetical protein	NA	NA	NA	NA
WP_054418252.1\|5955468_5956551_-	DUF2213 domain-containing protein	E5AGA6	Erwinia_phage	1.2e-54	39.2
WP_054418254.1\|5956560_5957400_-\|capsid	minor capsid protein	I3PGT9	Xanthomonas_phage	4.5e-36	36.5
WP_054418256.1\|5957341_5958622_-	DUF1073 domain-containing protein	A0A2H4PGN2	Escherichia_phage	5.4e-33	30.4
WP_054518868.1\|5958621_5960205_-\|terminase	phage terminase large subunit	A0A291LBL3	Klebsiella_phage	1.0e-110	47.7
WP_054418260.1\|5960155_5960629_-	DUF2280 domain-containing protein	A0A125RNL6	Pseudomonas_phage	3.1e-34	55.9
WP_181952972.1\|5960650_5961208_-	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	1.8e-65	65.2
WP_054418263.1\|5961301_5961922_-\|tRNA	methionyl-tRNA formyltransferase	A4JWM2	Burkholderia_virus	1.2e-73	65.8
WP_054518867.1\|5961912_5963034_-	ABC transporter ATP-binding protein	A4JWM1	Burkholderia_virus	5.6e-167	76.6
5962811:5962827	attR	NA	NA	NA	NA
WP_165601359.1\|5963030_5963207_-	hypothetical protein	A4JWM0	Burkholderia_virus	1.3e-09	57.8
WP_082381503.1\|5963166_5963391_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_146074736.1\|5963671_5963989_+	hypothetical protein	NA	NA	NA	NA
WP_054461089.1\|5964030_5964660_-	hypothetical protein	NA	NA	NA	NA
WP_054518866.1\|5964649_5965144_-	RusA family crossover junction endodeoxyribonuclease	A9YWY9	Burkholderia_phage	6.3e-30	52.0
WP_054518865.1\|5965140_5965371_-	hypothetical protein	NA	NA	NA	NA
WP_054518864.1\|5965367_5966447_-	hypothetical protein	NA	NA	NA	NA
WP_104011084.1\|5966443_5967295_-	DNA adenine methylase	Q5QF26	Pseudomonas_virus	1.5e-76	52.7
WP_054518862.1\|5967294_5969328_-	DNA cytosine methyltransferase	L7TH64	Pseudomonas_virus	2.8e-164	51.1

DBSCAN-SWA_8

5987501 : 5999938

Burkholderia_phage(40.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054417652.1\|5987501_5988032_-	hypothetical protein	A0A2H4JFP9	uncultured_Caudovirales_phage	3.2e-40	54.9
WP_049072550.1\|5988021_5988483_-	hypothetical protein	A0A0U5LBV3	unidentified_phage	1.3e-13	36.5
WP_063589448.1\|5988674_5989124_-\|tail	tail fiber assembly protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	8.3e-13	61.8
WP_054417651.1\|5989135_5990167_-\|tail	tail fiber protein	A0A1W6JT73	Escherichia_phage	5.9e-14	38.5
WP_054417650.1\|5990181_5990847_-	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	1.1e-72	59.7
WP_054417649.1\|5990848_5992030_-	hypothetical protein	A9YX12	Burkholderia_phage	3.1e-131	63.4
WP_054417648.1\|5992026_5992380_-	hypothetical protein	A9YX11	Burkholderia_phage	1.3e-34	65.0
WP_054417647.1\|5992388_5993132_-	hypothetical protein	A9YX06	Burkholderia_phage	6.7e-84	63.5
WP_054417675.1\|5993166_5994177_-	hypothetical protein	A9YX04	Burkholderia_phage	4.8e-77	51.3
WP_049072539.1\|5994196_5994496_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	4.1e-16	44.0
WP_054417646.1\|5994505_5995105_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	2.5e-20	34.3
WP_054417645.1\|5995097_5996774_-	hypothetical protein	NA	NA	NA	NA
WP_006393814.1\|5996766_5996925_-	hypothetical protein	NA	NA	NA	NA
WP_104010956.1\|5996951_5997401_-	hypothetical protein	A0A0N7IRF3	Acinetobacter_phage	2.9e-18	36.5
WP_006388470.1\|5997404_5997845_-	DUF3277 family protein	A0A0P0IKY2	Acinetobacter_phage	3.1e-36	54.1
WP_054417643.1\|5997858_5999334_-	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	3.6e-113	48.5
WP_049072533.1\|5999344_5999938_-	hypothetical protein	A9YX29	Burkholderia_phage	2.6e-46	47.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014065

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection