CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014313	Microbacterium sp. PAMC 28756, complete genome	4 crisprs	csa3,WYL,DEDDh,cas3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014313_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014313_1

804999-805096

Orphan

Consensus_repeat	Method
CTTCCCGCAGCACCTTTCTGATCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014313_1

>merge|NZ_CP014313|1|804999-805096|CRISPRCasFinder
CTTCCCGCAGCACCTTTCTGATCCCACGTCCGATCGGTCACTTGGTGCGGGATCGATAACGCTCCCTTGAGCGCTTCCCGCGGCACCTTTCTGATCCC

>NZ_CP014313|1|1|804999-805096|CRISPRCasFinder
CTTCCCGCAGCACCTTTCTGATCCC	ACGTCCGATCGGTCACTTGGTGCGGGATCGATAACGCTCCCTTGAGCG
CTTCCCGCGGCACCTTTCTGATCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014313.1\|WP_025105471.1\|802631_802940_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133394
NZ_CP014313.1\|WP_025105476.1\|797640_798393_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014313.1\|WP_062765528.1\|800855_802586_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223104
NZ_CP014313.1\|WP_081811653.1\|814330_815398_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP014313.1\|WP_025105475.1\|798389_798626_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226181
NZ_CP014313.1\|WP_029990079.1\|806874_807825_-\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|237013
NZ_CP014313.1\|WP_029990046.1\|815441_816206_-\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP014313.1\|WP_025105470.1\|803069_803492_+\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|107221
NZ_CP014313.1\|WP_025105477.1\|797005_797641_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014313.1\|WP_025105464.1\|807903_809547_+\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	unknown	unknown	gnl\|CDD\|236050
NZ_CP014313.1\|WP_025105468.1\|803820_804858_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
NZ_CP014313.1\|WP_025105460.1\|813230_814334_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|376844
NZ_CP014313.1\|WP_025105466.1\|806405_806612_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014313.1\|WP_025105474.1\|798788_799130_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014313.1\|WP_062766982.1\|810342_811161_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213260
NZ_CP014313.1\|WP_025105469.1\|803556_803784_+\|DUF2795-domain-containing-protein	unknown	unknown	gnl\|CDD\|378655
NZ_CP014313.1\|WP_025105462.1\|811172_812207_-\|PhnD/SsuA/transferrin-family-substrate-binding-protein	unknown	unknown	gnl\|CDD\|378117
NZ_CP014313.1\|WP_157544387.1\|805369_806305_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380141
NZ_CP014313.1\|WP_115642594.1\|799329_800694_+\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|366058
NZ_CP014313.1\|WP_025105461.1\|812237_813089_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673

Protein	Function_ID	Function_description	E-value
NZ_CP014313.1\|WP_025105471.1\|802631_802940_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133394	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	2.3703e-24
NZ_CP014313.1\|WP_025105462.1\|811172_812207_-\|PhnD/SsuA/transferrin-family-substrate-binding-protein	gnl\|CDD\|378117	pfam09084, NMT1, NMT1/THI5 like. This family contains the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine. They are regulated by thiamine. The protein adopts a fold related to the periplasmic binding protein (PBP) family. Both pyridoxal-5'-phosphate (PLP) and an iron atom are bound to the protein suggesting numerous residues of the active site necessary for HMP-P biosynthesis. The yeast protein is a dimer and, although exceptionally using PLP as a substrate, has notable similarities with enzymes dependent on this molecule as a cofactor.	4.26893e-48
NZ_CP014313.1\|WP_062765528.1\|800855_802586_-\|hypothetical-protein	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	1.29776e-60
NZ_CP014313.1\|WP_081811653.1\|814330_815398_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.36319e-79
NZ_CP014313.1\|WP_025105475.1\|798389_798626_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|226181	COG3655, COG3655, Predicted transcriptional regulator [Transcription].	2.36495e-20
NZ_CP014313.1\|WP_029990079.1\|806874_807825_-\|prephenate-dehydratase	gnl\|CDD\|237013	PRK11898, PRK11898, prephenate dehydratase; Provisional.	1.12143e-88
NZ_CP014313.1\|WP_025105470.1\|803069_803492_+\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|107221	cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.	2.68238e-29
NZ_CP014313.1\|WP_025105460.1\|813230_814334_-\|glycerate-kinase	gnl\|CDD\|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	5.2223e-118
NZ_CP014313.1\|WP_025105464.1\|807903_809547_+\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	gnl\|CDD\|236050	PRK07564, PRK07564, phosphoglucomutase; Validated.	0
NZ_CP014313.1\|WP_025105468.1\|803820_804858_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	2.28941e-133
NZ_CP014313.1\|WP_025105469.1\|803556_803784_+\|DUF2795-domain-containing-protein	gnl\|CDD\|378655	pfam11387, DUF2795, Protein of unknown function (DUF2795). This family of proteins has no known function.	0.000428848
NZ_CP014313.1\|WP_062766982.1\|810342_811161_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213260	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters. NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.40435e-113
NZ_CP014313.1\|WP_029990046.1\|815441_816206_-\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	1.37086e-14
NZ_CP014313.1\|WP_157544387.1\|805369_806305_+\|hypothetical-protein	gnl\|CDD\|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	8.70063e-07
NZ_CP014313.1\|WP_115642594.1\|799329_800694_+\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	1.21673e-106
NZ_CP014313.1\|WP_025105461.1\|812237_813089_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	2.0949e-73

>NZ_CP014313.1|WP_025105468.1|803820_804858_+|LLM-class-flavin-dependent-oxidoreductase
MNDVALSVLDLVPVRSGQTSAEAITASLSLAATADRLGYRRYWFAEHHNMPAVASTTPPVLIAAAATRTSRIRLGSGGVMLPNHAPLIVAEQFAALEAIAPGRIDLGLGRAPGSDPVITQLLRGSGTTSDVEQFPRHVQDIAALFTADGATVRFTSGGEYTVRATPAATGVPEVWLLGSSDYSAQLAASLGLPYVFANHFSGQGLERALDLYRTNYRPSEEHPEPRTFLTVNAVAAPTAEEAEARALPQLRMMARLRLNQPLVALETVEQALAAEHDAATDQVVEAARSRWFVGTGESVAAEVRSFASTYGVDEVMLSPVAGAYDAEPKDSAAGRAQTLELVAGA
>NZ_CP014313.1|WP_025105469.1|803556_803784_+|DUF2795-domain-containing-protein
MALSPTLDRFLAEMEYPATRDDLLREAAREGLPNHDRAALHDLPEQSFSAAWLIRYRLARNALADALTPASRLAA
>NZ_CP014313.1|WP_025105470.1|803069_803492_+|Hsp20/alpha-crystallin-family-protein
MALTFDPFSQLDRFAASVLDSVRAPRSMPVDLYRDGDRYILHADLPGADPGSIDVDLDGGQLTIRAQRTADTREGVRWLARERGAGSFLRQFSLGDGVDLDNISASYESGVLSVVIPVSERAKPRKIVVESGEQRQAIDA
>NZ_CP014313.1|WP_025105471.1|802631_802940_-|MerR-family-transcriptional-regulator
MTARDSRTPLYGIAVAAQLVDLPEATIRLFESKGLLAPARSDGGTRRYSDDDITRLRRAAELRGDGINIAGIARVLDLQDENAGLREALDAEAPERERSARD
>NZ_CP014313.1|WP_062765528.1|800855_802586_-|hypothetical-protein
MEAGIFYVLVGAVAVAAVARSRGWPAPLLVTVVALAASFLPFVPELEIDGHLLLGLVLPPLLYSAALDVSFVGFKRSLPQIRRLGIWLVLLTAFAVGLVAWWILPSLTLPGALLLGAIVAPPDAVSAAAIGRRLGLPRRIMTVLSGESLINDATSLTLYRVFAAILAGATLTVWDGIWQFLLAVGVGVGIGLIFGIVLHQLRMRIGDPVVIGTFGLLAPFGAYNIAEHLLGSGVLAVVAMGLFVGFNAPRTDYTTRQQEAPLWLSADLLLESFVFAYIGLQFPRVLSDLGSESVGHILLLSGAVLLVVLVVRPLYIYPISAWSNFQDRRRLARMDRGIASGEFDERRRRSRRWRDQSTDELRTQIVRERMAGLRLTWKDNAVISWAGMRGVVTLAIAVAAADLAGLDTEASHAIVVVAFIVTVGTLLLQGLTLPLLIRRLEIAGDEEHEEDVAALEMVKAKSREAGKAYLAEKRREWEQKHGEVDLGMFDAFTKRMTRVEKDTDDAQQVEDTVARPSYDDLVALTKGWLQVRREILVAERDAGELDEEVMRELLAAMDAEELALDTRGATRPLSRN
>NZ_CP014313.1|WP_115642594.1|799329_800694_+|dicarboxylate/amino-acid:cation-symporter
MLTSFGFQIIAALVLGIAAGLIGRQLGATPENPTALSATLDTIGSSYVTLLRAAVVPLIFTAIVASISNLRRVQNAARLAGQTILWFAITAFIAVIIGIVLGLVIQPGSRAGEGLEPGEPYTVGTWWNFLLGLIPQNFLGLTVSTSPGATEGAFTSSVGFNILQVIVVAAVVGIAALKAGKKAEPFLVFTESLLKVIQRVLWWIIRIAPLGTFGLIGSAVIKYGWEKLASLGWFAAAVYIGLALVLFVVYPILVRTHGLSIKQYFSGVWPAVQLAFVSRSSIGTLPLTERVTERNLGVPRSYASFAVPLGATTKMDGCAAIYPAIAAIFVAQFFGIELNFVQYLLIVIVSVVGSAATAGTTGAVVMLTLTLSTLGLPLEGVGLLLAIDPILDMGRTAVNVAGQALVPAIVAKREGILDEELYNAPREGLPFADDSGDDAPEADAASTPEPAGAR
>NZ_CP014313.1|WP_025105474.1|798788_799130_+|hypothetical-protein
MISTRIPSRRGLRLLAIVPAAALAFSLAACAGESRPSVDEVADGIQKVFEGTPQEEAMTDDAATCLAEALVDSDLSDETLGYIADGEDKQRDEADKALTTQIIQDNLQDCVTP
>NZ_CP014313.1|WP_025105475.1|798389_798626_+|helix-turn-helix-transcriptional-regulator
MSPAESDDEFTGIHCRLDELLAARGMTLTELSAAVGVSIVNLSVLKNDRARAIRYSTLRAICDALDCEVGDLLVLADR
>NZ_CP014313.1|WP_025105476.1|797640_798393_+|hypothetical-protein
MISFGSEAVWPSLLNIGIALAVCAAVVALVVWNSRRRGSRTVALDAALTLSGWWITLSALGAVVIVVKAFAADWAELHGATTVFLDWPSSLPCSEYGDSTTTMLSCGGTELSDFTVGHASLGLRLLAAAAQLSTLALTTIPAVVLALICFHTLRGRAFSRTVTRALVGGAIAFGVLGVLSDLLSGIAATTGLREALPADSTWYPQTYWLTVTPLPFAAALGLLALAAVFRQGMRVEQERAALERETEGLV
>NZ_CP014313.1|WP_025105477.1|797005_797641_+|hypothetical-protein
MAAVTATRSERADAITVILYAAAALVTVGLATTLRVGSTFRDAGIAWTIPIDEQPISATIDSGQISIEGIAQRAMIFATGVNGVSIAAIVAAIALWALAAVAVIGAVTLVAWNFLRGRFFVAGNARAFDVIGWTLVLAPMAIVMLETMGRNGVTAALGIGDGEPVHPIEFWTIAPIFATGVTVGLIAVAFRRGIRLQQEKVVLEKETEGLV
>NZ_CP014313.1|WP_157544387.1|805369_806305_+|hypothetical-protein
MRHRIPLPPDLGPHFAVRDAAAIGVGRKRYSSRDLARPFAGVRSANEPATFDDRVAAYLPRLREGQAFAGRTALRLWGLPAPVRWSPDEPLDVAVHTGTSPPRTVGVRGRRIAPGRADTWHIHGVPTVDPVSALFLCAREFVFTPVVVALDALVTSSDVYPGLRMGRPVATIESIDRQLTRWGRFPGCGRIRDGLAFARPGVESPKETETRLLLTSFALPEPAIQHIVSVDGRFLARVDLAYPECRIAIEYEGDGHRTDRDQWRIDIRRQRDLEDHGWLVIRVTELDLRDGGAALAARVRRALTVRHGIPG
>NZ_CP014313.1|WP_025105466.1|806405_806612_+|hypothetical-protein
MSTKTLALWVAYGTNGVVGSIRHDENGYVVTMAGADAAAGTYPSLASAKGALHARMLPGSAWPRFQEH
>NZ_CP014313.1|WP_029990079.1|806874_807825_-|prephenate-dehydratase
MNAVTARRTYSYLGPAGTFTEAALDQVAEARGQDWRPVHNVGEALADVLEGRSDAAMIAIENSIEGGVSTTQDALATLPGLRIIGEYLVRVNFVLVAPRGTTLDQVEVIAAHPVAYAQCHGWLGEHLPTHSHVPAASNVASAIGVLDGTSPAQAAIAAPGIVQHYDVDVLAEGIGDNAAAVTRFVLVTRTTRSPAPTGADKTSLIVELPHDHPGSLLEMLEQFSTRGINLSLIESRPIGDELGRYRFVIDADGHIEHERMADALLGIRRFSPRVVFLGSYPRADRQIVQYPDRYSDEIFIEARDWLRGILSGEPES
>NZ_CP014313.1|WP_025105464.1|807903_809547_+|alpha-D-glucose-phosphate-specific-phosphoglucomutase
MSSRAGLPAEESDLIDVDELIAAYYDRVPNPDVASERVVFGTSGHRGSSLTKSFNENHILATTQAIVDYRAAQGITGPLFLGRDTHALSLPAERSAIEVLLANGVDVRVDARDSWVPTPALSHAILTYNRDRAADDPGRADGIVVTPSHNPPRDGGFKYNPPHGGPADTDATGWIADRANQLIAGGLTEVRRERFADVDWDAITGYDFRDAYVRDLPSIIDIEAIRRAGVRIGADPLGGASVEYWSLIAEMHDIDLTVVNPEVDPTWRFMTLDWDEKIRMDPSSPSAMASLVAKKGDYDILTGNDADADRHGIVTPDAGLMNPNHFLAVAIDYLFSHREHWPREAAVGKTLVSSMIIDRVAESLGRRLLEVPVGFKWFVPGLLDGSVAFGGEESAGASFLRHDGSVWSTDKDGILLCLLAAEILAVTGKTPSQRYAELEDAFGASAYQRVDAPATPEQKATLGKLAPESVTATTLAGEDIIAKLSHAPGNGAAIGGLKVQTPHAWFAARPSGTEDVYKLYAESLRGPEHLAEVQAEARAVVSAALGD
>NZ_CP014313.1|WP_062766982.1|810342_811161_-|ABC-transporter-ATP-binding-protein
MDTHVQQERGPAATSTAPALEVSDLAITFASKRRQVTALEGVDLRVEEGEFLSIAGPSGCGKSTLLKAVAGLTAPSRGSIRLRGDEVRGPRQDIGYVFQRAALLEWRSVRGNILLQAEMRGMDMRKAQARADELIEMTGLTGFEKSLPHELSVGMQQRVSLCRALLHEPRVLLMDEPFGALDALTRERMNVELNRIWSATGTTVLLVTHSVAEAVYLASRVIVMGPRPGRILEEHRVDLPARRGYADVLEREEFHRVSSRVRELLGSSTDAD
>NZ_CP014313.1|WP_025105462.1|811172_812207_-|PhnD/SsuA/transferrin-family-substrate-binding-protein
MKKSGTILSSIALASAAVLALSGCGGSTAPASSGDGDGGELTPVTLMLNWYPYGEHAAFYYGVDQGIFEEHGIDLTIKAGQGSTKTAQAVGQGQVDFGWADTPAVLANIDKGVGIKSVGVFLQTTPSAVQVFADSGISSPEDLKGKTIAVSAGDAPTTTFPMYLEAVGLEEGDVTQQNLDAAGKIAAMLSGKVDGLIGFAHDQGPTIADKSGKDVEYLRYSDAGLNFFSNGLIAPTDTIENDPELVEALVAATSEAFEAAQEDPEAAVAAMEGKDPQMPSQEVLLHQWEETIELLHTDATEGQAPGANATEDWESTLEVLSEAGLISGDGDVETYFDDAFTPGK
>NZ_CP014313.1|WP_025105461.1|812237_813089_-|ABC-transporter-permease
MSSAPSATMTLALAADRPEPPGIVRWWSRHWHPLVFVLAVLALWWVSTSLGWVPAFIIPSPADTWAAFTDNAAYLAQNTWVTTYETVIGFVIAVVVGVLVAVLMVYSRGLEQTLYPVILFAQVIPKIAIAPLFVVWLGFGAEPKILVAVLMAFFPVVISGLAGLRTVDPEILQLASTMGASRFKTFLKVRLPAALPELLSGLKVAATLAVTGAVVGEFVGANEGLGYVILQANGNLDTAMLFAALIIMSLLGVILFGIIQIAERFLIPWHASKRDVAAATVRL
>NZ_CP014313.1|WP_025105460.1|813230_814334_-|glycerate-kinase
MTRVVIAPDSFKGTITAAEAAAALADGWREVEPAADIVLRPMADGGEGTVAAFATAVPDARRMPITVDGPAGAPVETSWLLLPSTTDAPGGTGVVDIASTSGIELLDGLRPGDADTTGFGQAIAAALDHGVSRLILGIGSSASTDGGTGLLTALGARFLDADGEPVARGARGLADIVTAELGALRGAPDVRVLTDVTNPLTGPRGAAAVFGPQKGLTAPEDIARVDDALAHLAVLLSVDPELPGTGAAGGTGAALVRWGGVLTPGAAEVAALIDLAGAVRGADVVITGEGSYDGQSGDGKVPSFLAALAAEAGARPLLAAGRISEDADTSLFAEAVSLTALAGSTTAALTDPARWLRVAGAALARTR
>NZ_CP014313.1|WP_081811653.1|814330_815398_-|LacI-family-transcriptional-regulator
MTPSATPAEPPAARRPRHARGPAPTLHDVALEAGVSLATASRVLNGSERKVAAPFRERVEAAAEALGYTANVSAQATARGRSPVIALLVADIADPYFGLIASGVARGADEQGLVVTVAITERDPAREARIVRALRGQRPQGLILAASRTQEEGQAETARELAEFTRLGGRVVAFGADGDGDRRVEIDNRAGAAALGRRMAELGYRSAVLVGAAEGVRTSDDRLAGFRAGFAEGGGEVAQTVRGDFRRESGAAAMTEALATGVPAGTVVFGISDVVAIGAMAAIRAAGREVGTDIAVCGFDDVPSSRDVTPALTTVCVPLSDAGYQAFRAIVDEDWQQPTLPLEVVVRASTPGLRA
>NZ_CP014313.1|WP_029990046.1|815441_816206_-|sugar-phosphate-isomerase/epimerase
MTGIRAGLCSVTFRALPPERIVALAAAAGLDVIEWGGDVHVPPGDVDRAAEVARMTTDAGLAVASYGSYFRAGPEESLTAVLDSAAALGADRVRVWAGEHGSAEVSAPERARVVTRLRAAAVEAASRGIGLALEFHGGTLADTAPATLELLHEVDHPMLSTYWQPTVGAPVPVALEEFRRLVPRVSAAHVFSWWPRTERHPLRSRSALWTRFFADAAASAHPPRDALLEFVPDDAPELLAGEAAALLGFLGRQP

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Crispr_ID: NZ_CP014313_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014313_2

1586291-1586399

Orphan

Consensus_repeat	Method
GGGGAGCGTTTTCGATCCCGCGAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014313_2

>merge|NZ_CP014313|2|1586291-1586399|CRISPRCasFinder
GGGGAGCGTTTTCGATCCCGCGAGGGGGAACTCGGGGCGCGGAGAAGGGTGCGGGACGGGAAAGGTGCCGGGGGAGACCGGAAGGGGAGCGTTTTCGATCCCGCGAGGG

>NZ_CP014313|2|2|1586291-1586399|CRISPRCasFinder
GGGGAGCGTTTTCGATCCCGCGAGGG	GGAACTCGGGGCGCGGAGAAGGGTGCGGGACGGGAAAGGTGCCGGGGGAGACCGGAA
GGGGAGCGTTTTCGATCCCGCGAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014313.1\|WP_025104165.1\|1578459_1578723_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NZ_CP014313.1\|WP_025104160.1\|1582497_1583235_-\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|379207
NZ_CP014313.1\|WP_051582230.1\|1593974_1595060_+\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
NZ_CP014313.1\|WP_025104159.1\|1583401_1583929_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014313.1\|WP_025104164.1\|1578719_1578974_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_CP014313.1\|WP_025104162.1\|1580306_1581662_-\|anaerobic-C4-dicarboxylate-transporter	unknown	unknown	gnl\|CDD\|377076
NZ_CP014313.1\|WP_025104163.1\|1578970_1580305_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377697
NZ_CP014313.1\|WP_025104154.1\|1588446_1589616_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP014313.1\|WP_025104152.1\|1591111_1592017_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP014313.1\|WP_025104161.1\|1581658_1582399_-\|peptidase-E	unknown	unknown	gnl\|CDD\|153240
NZ_CP014313.1\|WP_025104148.1\|1595056_1596070_+\|hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240644
NZ_CP014313.1\|WP_025104150.1\|1592940_1593975_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_CP014313.1\|WP_025104153.1\|1589802_1591044_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP014313.1\|WP_025104166.1\|1577764_1578358_+\|DUF305-domain-containing-protein	unknown	unknown	gnl\|CDD\|367619
NZ_CP014313.1\|WP_025104147.1\|1596066_1596993_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379240
NZ_CP014313.1\|WP_025104157.1\|1585343_1586138_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP014313.1\|WP_025104158.1\|1584052_1585054_-\|magnesium/cobalt-transporter-CorA	unknown	unknown	gnl\|CDD\|213364
NZ_CP014313.1\|WP_115642561.1\|1587430_1588558_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP014313.1\|WP_025104156.1\|1586411_1587434_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP014313.1\|WP_025104151.1\|1592013_1592919_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472

Protein	Function_ID	Function_description	E-value
NZ_CP014313.1\|WP_025104165.1\|1578459_1578723_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	2.1529e-08
NZ_CP014313.1\|WP_025104160.1\|1582497_1583235_-\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|379207	pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family. This family of presumed lipases and related enzymes are similar to pfam00657.	4.94116e-26
NZ_CP014313.1\|WP_051582230.1\|1593974_1595060_+\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	1.10006e-16
NZ_CP014313.1\|WP_025104162.1\|1580306_1581662_-\|anaerobic-C4-dicarboxylate-transporter	gnl\|CDD\|377076	pfam03605, DcuA_DcuB, Anaerobic c4-dicarboxylate membrane transporter.	7.94607e-145
NZ_CP014313.1\|WP_025104164.1\|1578719_1578974_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	1.06465e-16
NZ_CP014313.1\|WP_025104154.1\|1588446_1589616_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	4.31333e-44
NZ_CP014313.1\|WP_025104163.1\|1578970_1580305_-\|hypothetical-protein	gnl\|CDD\|377697	pfam06738, ThrE, Putative threonine/serine exporter. ThrE is a family of bacterial and Archaeal proteins that catalyze the export of L-threonine from the cell. UniProtKB:Q79VD1 has been characterized as being necessary for this export. The domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent efflux of threonine and serine.	2.44507e-32
NZ_CP014313.1\|WP_025104152.1\|1591111_1592017_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.61335e-78
NZ_CP014313.1\|WP_025104161.1\|1581658_1582399_-\|peptidase-E	gnl\|CDD\|153240	cd03146, GAT1_Peptidase_E, Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.	4.89474e-49
NZ_CP014313.1\|WP_025104148.1\|1595056_1596070_+\|hydroxyacid-dehydrogenase	gnl\|CDD\|240644	cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	1.09452e-101
NZ_CP014313.1\|WP_025104150.1\|1592940_1593975_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	0.000935299
NZ_CP014313.1\|WP_025104153.1\|1589802_1591044_+\|extracellular-solute-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.02772e-55
NZ_CP014313.1\|WP_025104166.1\|1577764_1578358_+\|DUF305-domain-containing-protein	gnl\|CDD\|367619	pfam03713, DUF305, Domain of unknown function (DUF305). Domain found in small family of bacterial secreted proteins with no known function. Also found in Paramecium bursaria chlorella virus 1. This domain is short and found in one or two copies. The domain has a conserved HH motif that may be functionally important. This domain belongs to the ferritin superfamily. It contains two sequence similar repeats each of which is composed of two alpha helices.	9.22979e-46
NZ_CP014313.1\|WP_025104147.1\|1596066_1596993_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379240	pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.31935e-08
NZ_CP014313.1\|WP_025104157.1\|1585343_1586138_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.41364e-61
NZ_CP014313.1\|WP_025104158.1\|1584052_1585054_-\|magnesium/cobalt-transporter-CorA	gnl\|CDD\|213364	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily. This bacterial subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Mg2+ transporter Mycobacterium tuberculosis CorA (which also transports Co2+). Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	1.45995e-147
NZ_CP014313.1\|WP_115642561.1\|1587430_1588558_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.50198e-61
NZ_CP014313.1\|WP_025104156.1\|1586411_1587434_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	3.92213e-50
NZ_CP014313.1\|WP_025104151.1\|1592013_1592919_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.57384e-83

>NZ_CP014313.1|WP_025104157.1|1585343_1586138_-|SDR-family-oxidoreductase
MRIDLAGKTALVTGSTQGIGLAIATTLADAGARVAVNGRNPETVSSVVAALQEENPDRNLVPAPGDVTTEDGAARVLAATGDVDILVNNLGIFGATPALDISDDEWRRYFEVNVLAAVRLIRATLPGMTERGWGRVLDIASDSAVVIPAEMIHYGMSKTALLAVSRGFAKEAAGTGVTVNSVLAGPTHTGGVEDFVYSLVDPELPWEEAQREFMRVHRPQSLLQRLIEPEEIANMVAYLASPLASATTGAAVRVDGGYIDAIVP
>NZ_CP014313.1|WP_025104158.1|1584052_1585054_-|magnesium/cobalt-transporter-CorA
MALIDNGVYVHGRRVETPKNLDETYRMLDAAGGIAWIGLYRPSPEEVASVAREFDLHPLAVEDALSGHQRSKVERYGDTLFAVLRPARYRDKEESIEFGELHLFIGPDFVVTIRHAESPNLAAVRRRMEANPELLAMGPEAVFYAILDEVVDEYEPVVAGLENDIDEIEDQLFGDSDDDALSRRIYELSREVINFQRAVHPLSGMLEWLRRGSEKYRIDEELQRSLRDVLDHTIRVNERVDSFRAILENALTVQSALVARRHSEAGLAQNDEIKKISSWAAIIFAPTLVGTVYGMNFDVMPELHWAFGYPMAIGAMAAFAVGLYGVFKYKRWL
>NZ_CP014313.1|WP_025104159.1|1583401_1583929_-|hypothetical-protein
MALDLLLSRIVESGLLEDPVSENGLVYGRASLDAAGTVVNVNVDPELEGDETAEDLDPDELVAAIARVLSMSEKRWRAIVEEVALDIEDAVEDEPVVEQIDLRDDLEATSVVVFADAVLLAFVAPKQFPESRILVQLDEELEVDGIEVREPDGTEVIDVDTLDELMDLISRADRD
>NZ_CP014313.1|WP_025104160.1|1582497_1583235_-|SGNH/GDSL-hydrolase-family-protein
MPIAASASPATASDDLGRLAAALRDPAPLNWIITGDSITHGLVHTQGGRSYPEHLHELIRGELERVRDIVLNTAISGNRIVDILDDWERRVAGWQPDVVTLMVGTNDASDGGPRPVISPDDYAASLHDFVRRVRGLGAIPVLQTPPAIDVRNAPERARIADFAEAVRQVAAAEDVILVDQHAHFAELGNGGVPWGLMNDPFHPSAVGHAALALELARVLGIAPQGPRARTAALLEGLVGTARVFG
>NZ_CP014313.1|WP_025104161.1|1581658_1582399_-|peptidase-E
MSHVVATGAGKAMMERRNDPTHEYILKLTGKERPRVLFVGTATGDDTAYIVSFYSTYDSDRCAPHHLPLFHRAVDDLAGFVKGFDVIHVGGGNTANMLDVWKRQGLDEIMREMWEDPSSNVVFTGGSAGGICWFEGGTTDSYGPTLQVLPEGLGFLHGSFCPHYDAEDQRRPLFHASLLSGELSTGYAVGNLQSLHFENGEFVTAVSPVENPLALKVEAVDGAIVETELPVEVLTGSAPIVKGPSS
>NZ_CP014313.1|WP_025104162.1|1580306_1581662_-|anaerobic-C4-dicarboxylate-transporter
MNDSVWILVAELIVVVLAIFMGTRTSGIGLGVWGLVGVAVLVFVFGEAPGNAPVDAVFIVITVITAASTMQAAGGIDWMVSVAAKVIRKRPKSVVFLAPAMSFLFTVGAGTGNIFYPLLPVIYDVSYQQKIRPERALSVSAVASQVGILCSPVSAATASMVVLLAPQGVDLGGLLLIMWPASIAGLLVAALVMMRHGKDLEDDPEYQKRLAEGQIKPPVVDAHENKLPATAVLSASLFLAGVAVIVFFGLFENLRPVIGTDDDGDPLRLSVTVIIEVVMGIIAALIFVFCKVKAADVPKQSTFPAGIVGAIALFGIAWLANTFVAANQTLIVDGLGSVVSGSSAFLGALLFALALFAVAMLTTSQSSATNAIVPIGITIGLPASLLVGLWPAAMGIYTLPANGSQVATVAFDQTGTTKMGKFVLDHSFQLPNLVYVGTAIVVGVALSFLFW
>NZ_CP014313.1|WP_025104163.1|1578970_1580305_-|hypothetical-protein
MTDVVDRSALRQFLLGLAQGMNASAESVDRIRDTIAEVATASGGDGADFVVLPTIIIVETGDAEEQRVAFRSATNASFRFDQIAALYDLIAQAKTGDVDPLDGIRRLNEIGAMRPRLGWFTRTLGHAILTTGLALLLAPTWQGALVAFVLGFGIGLLKLVRSPTLQLVMPIAAAFVCAAAVFLLAEVIEIGDPIRLLIAPLVTFLPGGVLTTATVELAAGQMISGASRLIYGFVQLALLAFGILAAGAVVGVSSDSYEALDASSSYLPWWVPLLGILVFALGNYLHFSSPPSTFGWVLLALVVAYLGQWAGTEFIDPAVGGFVGAVAVTPVVFWIAGLRHGAPSQLTFLPAFWLLVPGAAGLVGLTEAVATDNGLADFTAALVSVMSIALGVLIGTALYRVVHHGAEEFVQFAVAPPPAEDEEPAPTLWHRLSAPLRRLRRRDR
>NZ_CP014313.1|WP_025104164.1|1578719_1578974_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MTYDVQVLPVAVRAIRKLPPEARRRIQAVIELLSEDPRPPAARRLTGRPEWRVRTGDYRVLYRIEDGILTVVVVHAGHRREVYR
>NZ_CP014313.1|WP_025104165.1|1578459_1578723_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MSEIAITEARARLASIIDEARDEPVYLTRRNLPVAAVVDASLLERLLEDAEELADIRAVDAAWDETARLDETPIPWEEVKRDLGLVP
>NZ_CP014313.1|WP_025104166.1|1577764_1578358_+|DUF305-domain-containing-protein
MTNRTTAAAVLVLAGTLALAGCASTAPAGPADHSGMGHSTSDAPLAGANEADAMFASMMIVHHEQAVEMSDIVLAKDDVDPRVADLAERITAAQGPEIEKMQGWLDDWGAEAGDPAAMDHGDGMMSDDDLAALEAAAGPEASRLFLEQMIAHHEGAVAMAEAEVADGENADAVALAQDIVDAQTAEIAEMKEILATL
>NZ_CP014313.1|WP_025104156.1|1586411_1587434_-|Gfo/Idh/MocA-family-oxidoreductase
MTAPRPLRIAVLSFAHTHALSYVHALQQMPGVELIAADPDGASAPDDAPRGATLAAELGVAYVETYDEAFAWGPDAVVVAAENSRHRALVEQAATAGVHVLCEKPLATTVEDAIAMRDACDRAGVLLMVAYPVRFSPAVRDAVAELRSGRLGKILGVTGINNGKLPQDRAWFTDPALAGGGALVDHVVHCADLLDELLGERAQTVRGVSNSILHGERDLAVETGGLVTIQYPSGVIATIDCSWSWPLSSPTWGGLTLEVVAERGTVTVSPFAKGVAGHDAHGETWTPVGADLDALLLEEFVQAVRAGRQPQPDAGVGIRTVEIVKAAQESASRAGTPIPL
>NZ_CP014313.1|WP_115642561.1|1587430_1588558_-|Gfo/Idh/MocA-family-oxidoreductase
MPAASGRHLRHRGHARPTDHPPAARPRGRRRPRGEAVSTLKVGLIGAGGISRVHADAWRALGVQGFVTSKEGAEEIAAEYGFEVVADVDALLEQVDVVDIVTPSSTHADFALRAIARGVDVICEKPLAATAEAAAEVTAAAAAAGVRLFPAHVVRYMGEYGRIKAGIDAGQIGTPAVQRFRRLGAAPQAPWFFSERAGGGVIRDLMIHDIDQALWFAGPVDSVYAVQNPPTVDDRVPAPVTAHVVLTHRNGVISHVHASWVQPGMPFRTSVEVAGSEGRLRYDSAEDHTLRTDAVLVEGATDYLPPMSPEESPYYAEIADFVAAIAEGREAVVTPEDGIQAVAVAEAAYASIASGAPVALPASSPAVAVAEEATR
>NZ_CP014313.1|WP_025104154.1|1588446_1589616_-|ROK-family-protein
MGATSPLSIVARSALRLRDAGPATVSDLSRSLEVSRTSVENAVAVLSDSGLLVDAPAQVGGGAGRPARRYSFHAAAGVVVGVDVGVASVRVVVADLAGVVIAQRTFPGVAEQPDGPAKLAAVIDDVRRTLARLSLPRTGLRAIGVSLPGIVDDDGRVTTSVVIPEWSGIDIGSQLRQAFGCPVAVDNGVRLAAVAEHHLGVAQLVDDVIYLSVGNRIAMGLILGGRPRRGIHNAAGDIGRLAFRGLNTETGQISWRTAPTAAEVFALARSGEQAAREELYGFIDELAHGIATLIMTVDPAMVVIGGGLSAAHEQLLDPLRAALPGHLGLPFQVPVAEARLGAEAAAHGAVVHAFQRHPGDIYGIEDMPAPPITPLPHDPAAGDDPEEKQ
>NZ_CP014313.1|WP_025104153.1|1589802_1591044_+|extracellular-solute-binding-protein
MRVSKITGVVAGVAAATLLAGCSAGGGNTAEGEQDITVWLYPVIADEAVHKDFWDSTIEAFEKENENVNVKYEIFPWANRDEALQTAIAAGKGPDVVYLIPDQLAAYQKSIAPLNDLLSEERQGDLLPNVKESVTLGGDILGAPILTSAQPLICNAAAFEAAGVTEYPETWDDIADMAPAFIDKGMYALNYPASAENTLNLTYYPLLWQAGGEVYTEDGEVGFDSKAGEEALTFLTDLAEEGALDPEALTTNVPLEQTAIAQGKVACTWNNAVTEVAPFWGEENVKVLAPLTDKESVAYGTVGSLSVLKGSKAPEAAAAFAEFATGADVVEPYLKAAGYFSALSTTEPLYADDPLLGEVEKYVPDTTVGELDASSRALMGVLSPEIQAALLGQKSPADALKDAAAAAAPLLQK
>NZ_CP014313.1|WP_025104152.1|1591111_1592017_+|sugar-ABC-transporter-permease
MTTATTAPKPAGRVARVLARREARVAFLFVLPAFLLFIAFRFGPSIAGVALSFFDYDISGEIAWRGLDHFQRLVADPLFWRALGTTLIYTVFAVPIALVLSTIMALGVRRAFRGARFFRSIFFLPVITSLVLAGSIFVWIFSANGPWSALMAPLGLGGSWLGSTVLVIPAIVVVGVWSRFGYGMMILIAALQDVPRELEEAALVDGANAWQRFRWIILPHLRPTFFFLAVIETTAAFQVFDVIYVMTQGGPANASYSLVYMLYDQGFRYFDYGYAAAVGVALFLMTLVVALIQRLVIGKQK
>NZ_CP014313.1|WP_025104151.1|1592013_1592919_+|carbohydrate-ABC-transporter-permease
MTALLQPPTQTTPPATRPAARKRRSFRALEPTGWGVAVRWIWLSIAGILSFFPFYAMVVLSLKPGMLVELPGSLLPWNDISFEAYEQVLAGQNILVWLFNTLVYSLVSVVAVLFLSALAGYAFAKKRFRGKEVMFWSFLAMVMVPFHVTLIPTFILMANLGGIDTYWGLILPTLANAQAVFLMRQFIQGLPDELFEAARIDGAGEFRIFLRIVLPLCKPILATLGIFVFLWHWNDFLWPLIIAKSNSMFTLTVGISSLQQQDVPLSTMLAGSVVALLPIFLAYLIAQRYVQEGVTGTGIKG
>NZ_CP014313.1|WP_025104150.1|1592940_1593975_+|NAD(P)-dependent-oxidoreductase
MTQYAFASEAELEEALATPSDGLVADLAQGSGDLVILGAGGKMGPTLAMLARRGLDAAGRTDDAVYAVSRFGDAAIRERLEAAGVRVVPFDLIENDDLAGLPDAPNVVFMVGAKFGAATNASWAWEVNAALPDRIARRYRDSAISVLSTGNVYPFVPATSGGAAEETTPAPIGEYAQSCLGRERVFEFGAQERGTKVAIIRLNYAVDLRYGVLADIGSAVHAGEPVSVATANVNVIWQGYANEVVLRSLVHASTDPFVINLTGPELLSVSSIAHRFGELFEREVEIVDEPQPTALLSDARRCMALFGYPSVSAEELIRMQAGWIRDGLPMIAKPTKWAVRDGKF
>NZ_CP014313.1|WP_051582230.1|1593974_1595060_+|dihydrodipicolinate-synthase-family-protein
MTDAAARTATVPSLRPEAAATLARGAVIPAHPLALTAARTLDERRQRALSRYYLDAGAGGLAVGVHTTQFEIRDPEHALFEPVLALAAEEMDARDDATLVRIAGVAGDTAQAVAEAELARSLGYDAVLVSPRVAGADERALLDRARAVGEVLPLVGFYLQTAIGGPVLDREFWREFAAIPSVVAVKAAPFDRYRTLELVRGVAASGRADEIALYTGNDDAIVADLLSEFHVDSPSGRRTLRFVGGLLGQWAVGTHAAVALLERVHRALAGDAEAYREVGRRASDMVDVNQAVFDPGNDFHGVIAGVHEMLRQQGLLEGTWCLDPAEGLSPGQAEEIARVRQAYPELNDDAFIAENLEAWLR
>NZ_CP014313.1|WP_025104148.1|1595056_1596070_+|hydroxyacid-dehydrogenase
MTAGTSAPTVVAVVSAELFAEFFSPDDAARLEAVAARLGGTFVRVDRLADAVLDEARVVVTSWGVGPFDHAVLATLPKLELIAHTGATIKPFATDALFDRGVRVTQAGAGMARSVAEVSLTFTLALLHRVPEMHDALRAGDGWWDAEAVGVQHEILGAPIAVIGASRTGRAYLELLRALGAQPLLVDPTLDAAEASSLGAELVTLDEALRRAQIVAVHAPTLPETHHLIGACELALMPDGAGLVNTARSWLVDEAALLAELRRGRLSAAIDVFDEEPLSAESPFRSAPRVLLTPHRAAGTREGRLRQGRIVADELDAFAAGRPLAHAVDRAQLSSMA
>NZ_CP014313.1|WP_025104147.1|1596066_1596993_+|GNAT-family-N-acetyltransferase
MSAVVVRSARAEDQPALAALWAAAFTPPLAPDQWLVDDERLSHTLVAEDDEGVCGSIYGLPKSLRESDGAVARVHAIGSVAVAERARGRGLARRLVAATLDAAGDADWALLFTGTPEVYRSSGFTTFSMPRMMAGPWAASATAVELASVVRESVGLGVLGPLREVYERSRTGVVVLAPVRGDRDWTMAEVRLRGATLYRLAEADATVGYAVAEVRDGVGLLHESATDPTAADPAGVRHAVLEAVAADWAAAGVRTCELAVPALAAEERAVRAFAPAAVRQDDRTGMIRPLRREARVDGIRHFTAGDYF

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Crispr_ID: NZ_CP014313_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014313_3

2353410-2353611

Orphan

Consensus_repeat	Method
TGCACGACCGGGTGACGGATGCACGACCAGGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP014313_3

>merge|NZ_CP014313|3|2353410-2353611|CRISPRCasFinder
TGCACGACCTCGGGACGCATGCACGACCGGCGACAGTGTCTGGTCGTGCAGATGGAACGGGGTAGTGCATCTGTAGGCGGGCTCGGGACGCGGGTCCCCGTCGGGGCGGAGACGTACGACCTGGGGACGAGTGCACGACCGGGTGACGGATGCACGACCAGGGGACGAGTGCACGACCCGGGTGACGGATGCACGACCGGGT

>NZ_CP014313|3|3|2353410-2353611|CRISPRCasFinder
TGCACGACCTCGGGACGCATGCACGACCGGCG	ACAGTGTCTGGTCGTGCAGATGGAACGGGGTAGTGCATCTGTAGGCGGGCTCGGGACGCGGGTCCCCGTCGGGGCGGAGA
CGTACGACCTGGGGACGAGTGCACGACCGGGT	GACGGATGCACGACCAGGGGACGAGT
GCACGACCCGGGTGACGGATGCACGACCGGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014313.1\|WP_025103815.1\|2347380_2349252_+\|phenol-2-monooxygenase	unknown	unknown	gnl\|CDD\|236223
NZ_CP014313.1\|WP_025103814.1\|2346544_2347252_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224332
NZ_CP014313.1\|WP_025103829.1\|2362054_2362384_-\|1,2-phenylacetyl-CoA-epoxidase-subunit-B	unknown	unknown	gnl\|CDD\|237504
NZ_CP014313.1\|WP_025103818.1\|2351099_2352227_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP014313.1\|WP_025103824.1\|2357121_2358660_-\|ATP-dependent-DNA-ligase	unknown	unknown	gnl\|CDD\|235108
NZ_CP014313.1\|WP_025103816.1\|2349332_2350307_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP014313.1\|WP_025103817.1\|2350308_2351070_+\|ABC-transporter	unknown	unknown	gnl\|CDD\|272861
NZ_CP014313.1\|WP_025103826.1\|2359507_2360671_-\|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK	unknown	unknown	gnl\|CDD\|131215
NZ_CP014313.1\|WP_025103820.1\|2352926_2353307_+\|glyoxalase	unknown	unknown	gnl\|CDD\|319924
NZ_CP014313.1\|WP_036292686.1\|2352223_2352850_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP014313.1\|WP_025103813.1\|2345107_2346487_+\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP014313.1\|WP_051582222.1\|2342808_2343543_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP014313.1\|WP_025103827.1\|2360670_2361174_-\|phenylacetate-CoA-oxygenase-subunit-PaaJ	unknown	unknown	gnl\|CDD\|131214
NZ_CP014313.1\|WP_025103825.1\|2358727_2359498_-\|crotonase	unknown	unknown	gnl\|CDD\|235852
NZ_CP014313.1\|WP_025103822.1\|2354723_2356451_-\|thiamine-pyrophosphate-binding-protein	unknown	unknown	gnl\|CDD\|223107
NZ_CP014313.1\|WP_025103823.1\|2356611_2357121_+\|phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|225145
NZ_CP014313.1\|WP_025103812.1\|2343491_2344964_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|237193
NZ_CP014313.1\|WP_025103821.1\|2353848_2354697_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_CP014313.1\|WP_025103830.1\|2362383_2363379_-\|1,2-phenylacetyl-CoA-epoxidase-subunit-A	unknown	unknown	gnl\|CDD\|184320
NZ_CP014313.1\|WP_025103828.1\|2361167_2362058_-\|phenylacetate-CoA-oxygenase-subunit-PaaC	unknown	unknown	gnl\|CDD\|368300

Protein	Function_ID	Function_description	E-value
NZ_CP014313.1\|WP_025103815.1\|2347380_2349252_+\|phenol-2-monooxygenase	gnl\|CDD\|236223	PRK08294, PRK08294, phenol 2-monooxygenase; Provisional.	0
NZ_CP014313.1\|WP_025103814.1\|2346544_2347252_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	9.60995e-35
NZ_CP014313.1\|WP_025103829.1\|2362054_2362384_-\|1,2-phenylacetyl-CoA-epoxidase-subunit-B	gnl\|CDD\|237504	PRK13781, paaB, phenylacetate-CoA oxygenase subunit PaaB; Provisional.	4.10694e-55
NZ_CP014313.1\|WP_025103818.1\|2351099_2352227_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	8.19539e-37
NZ_CP014313.1\|WP_025103824.1\|2357121_2358660_-\|ATP-dependent-DNA-ligase	gnl\|CDD\|235108	PRK03180, ligB, ATP-dependent DNA ligase; Reviewed.	0
NZ_CP014313.1\|WP_025103816.1\|2349332_2350307_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	4.5507e-82
NZ_CP014313.1\|WP_025103817.1\|2350308_2351070_+\|ABC-transporter	gnl\|CDD\|272861	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family. The seed members for this model are a paralogous family of Mycobacterium tuberculosis. Nearly all proteins scoring above the noise cutoff are from high-GC Gram-positive organisms. The members of this paralogous family of efflux proteins are all found in operons with ATP-binding chain partners. They are related to a putative daunorubicin resistance efflux protein of Streptomyces peucetius. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.	0.00605948
NZ_CP014313.1\|WP_025103826.1\|2359507_2360671_-\|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK	gnl\|CDD\|131215	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	1.67397e-154
NZ_CP014313.1\|WP_025103820.1\|2352926_2353307_+\|glyoxalase	gnl\|CDD\|319924	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	6.69396e-20
NZ_CP014313.1\|WP_036292686.1\|2352223_2352850_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.02895e-65
NZ_CP014313.1\|WP_025103813.1\|2345107_2346487_+\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.45693e-159
NZ_CP014313.1\|WP_051582222.1\|2342808_2343543_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.40529e-39
NZ_CP014313.1\|WP_025103827.1\|2360670_2361174_-\|phenylacetate-CoA-oxygenase-subunit-PaaJ	gnl\|CDD\|131214	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	4.44752e-65
NZ_CP014313.1\|WP_025103825.1\|2358727_2359498_-\|crotonase	gnl\|CDD\|235852	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.	9.6406e-52
NZ_CP014313.1\|WP_025103822.1\|2354723_2356451_-\|thiamine-pyrophosphate-binding-protein	gnl\|CDD\|223107	COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism].	5.97604e-83
NZ_CP014313.1\|WP_025103823.1\|2356611_2357121_+\|phosphoribosyltransferase	gnl\|CDD\|225145	COG2236, COG2236, Predicted phosphoribosyltransferases [General function prediction only].	2.54932e-38
NZ_CP014313.1\|WP_025103812.1\|2343491_2344964_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|237193	PRK12764, PRK12764, fumarylacetoacetate hydrolase family protein.	0
NZ_CP014313.1\|WP_025103821.1\|2353848_2354697_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	3.59739e-60
NZ_CP014313.1\|WP_025103830.1\|2362383_2363379_-\|1,2-phenylacetyl-CoA-epoxidase-subunit-A	gnl\|CDD\|184320	PRK13778, paaA, phenylacetate-CoA oxygenase subunit PaaA; Provisional.	0
NZ_CP014313.1\|WP_025103828.1\|2361167_2362058_-\|phenylacetate-CoA-oxygenase-subunit-PaaC	gnl\|CDD\|368300	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein. This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex.	3.44551e-93

>NZ_CP014313.1|WP_025103820.1|2352926_2353307_+|glyoxalase
MDWKIELIFVPVSDVDRAKDFYVKIGFHADHDQVPYEGLRFVQMTPPGSACSIAFGTGLTSGLEPGQQNTIQVVVPDADEALAHLRGLGVEAEGVDEQDWGRFVRFDDPDGNTWTLQELPDYSAQG
>NZ_CP014313.1|WP_036292686.1|2352223_2352850_+|response-regulator-transcription-factor
MTAAPTVPIRLLIADDQALVRGALGALLDLEPDLEVQGLAADGAEALRLAEELQPDVCLMDIQMPGVDGVEATKRIRAASPQTRVLVVTTFARPGYLRAALDAGASGFVVKDTPAEELAAAVRRVHAGLRVLDPKLAEESLFEGANPLSDRERQVLRLAADGRSAAAIAAEVFLSAGTVRNHLSAAIGKTGAENRAQAVRIASDKGWL
>NZ_CP014313.1|WP_025103818.1|2351099_2352227_+|two-component-sensor-histidine-kinase
MTMQEGREADARSGTGKDPWARFGWLMAVVWLVFLIYPVLALLASAAPPAWVVTGWVALVAFIVLYVTGFLHGMRGGGGLGRTPSRRQWITFAALIACALVTIPAVGGSALSFLPFIMSFASYGLTRAWHWITTIAALVVAAGCVFLIPDNLSYLSVLAIVALLGVVNTVSTWLIVRSAEAERLGRELATSEGREAVARDVHDLIGHSLTVVGLKAQLVRRLMDSDLERAKAELADIERLTAEAIAGVRQTVAGARATTLVEQLASTEDSLRAADIALVVDGTPDALSPVQAITASWILREATTNTLRHSGAAAVRVRIAPGVLTVEDDGVGPASATGHREGNGIRGMRERAAAAGAGFAVRPGEAAGTRVEVTW
>NZ_CP014313.1|WP_025103817.1|2350308_2351070_+|ABC-transporter
MTTTVSPTMLRIEGLRQLRNPYTLAFTLAMPVAMYLLFGAGMGYGTLSAGNGNVSFSVMVSMAAYGTAVAMSSLTSLAATEAKQGWGRQLAMTPLTTTGYALTKLLTAVSFAALALVAVFVAGLLTGAEADGAWRWVVTAALILGIGLMFGLYGLGFGLFFGSDSAAALASISMTFFAFFGNVFMPLDGVMLDIARFTPLYGFVALSRWPLTEGVLTTGQTDELWMLLLNVAVWLVVFAVLVTVGVRRSRSRR
>NZ_CP014313.1|WP_025103816.1|2349332_2350307_+|ABC-transporter-ATP-binding-protein
MNETSVQEAAPRVASSSASPAVDDGPVALELIDVRKHFGTGERRVPAVDGVDLSIRRGEVVALLGPNGAGKTTTLDMLLGLTAPSSGTVRVLGAAPERATANGAIGAVLQTGGLLGDLTVGETVRLIASLYGREALARVPEVMRRADLAGLARRRVSKCSGGEQQRVKFALAMISDPDILVLDEPTAGMDVTARRHFWDVMRADADAGRTIVFATHYLEEAEQFARRTVVMHRGAVVADAPTALLRASLGERTVSATVPDVSDALVAALTAAEGVTGVRVDGDRLSLRATDSDAAARLLLDGGARDLEIAAPTLETAFTALTED
>NZ_CP014313.1|WP_025103815.1|2347380_2349252_+|phenol-2-monooxygenase
MQFHHHGYVSGDPRVQDAAGTGIDRPAALPDEVDVLIVGSGPAGMLLAAQMSQYPDITTRIIEKREGRLVLGQADGIQPRSVETFQAFGFAERIIAEAYNIGWMNFWGPDPEHPDQIVRTTRTADYAYDICEFPHLIVNQARVLDYFAEAAADGPGRIVPDYGVEFLGLTVHEEGEYPVEVRVRHVGEADERVVRAKYVVGCDGARSGVRQAIGRTHVGASAAHAWGVMDVLVNTDFPDWRTKCAINSKAGNILHIPREGGYLSRMYIDLGEVAADDDHRVRQTPIEEIIRRANAILHPYTLDVKQVAWHSVYEVGHRVTDGFDDVDPGVDRSPRVFLTGDACHTHSAKAGQGMNVSMQDGFNLGWKLGSVLSGRAPESLLATYGAERRPVAQQLIDFDREWSSLMARKPEEISDPNELATYYLATAEFPSGFMTQYTSSMITGTDAHQALAVGYPLGKRFKSAEVVRVGDGNVVHLGHHAKADGRWRVYAFGDRTGEALAAWAEMAAPVFARFTPADADADAVFDVKAVYQQPFEEVEVTTTPELFQPKTGPLGLTDWEKVYAAGPSKWCGTDIFEARELSRDGVVIVVRPDQYVAAILPLDGVDGVDELAGFLDGALLPAR
>NZ_CP014313.1|WP_025103814.1|2346544_2347252_-|helix-turn-helix-domain-containing-protein
MSERPAAPASQTLSRGIRILEVLADARGALTIDDIAGRLEVHRSIAYRLLRTLEDHGLVTRDASGAVSLGARMAALAAGVAHDLQAEALPELTAIANELGMTCFLAVLDGAECITLASVEPRHAVASVAQRPGARHSVTVGAPGKAILAQLDGAEVPVAISPALRADVDSAAARGYATSHDEVIPTVQSVAVPLRLRGQRPAAIAVVHVATDLDDGEVAARLRRSADLIREALEG
>NZ_CP014313.1|WP_025103813.1|2345107_2346487_+|MHS-family-MFS-transporter
MSGQSQGGFTPTGTIATAADRRRVVFATVVGTTVEWYDFFIYATAVGLVFGQLFFAPLGANSALVGFATVGVSFLFRPLGAFLAGHYGDKLGRKAVLMWTLILMGAATALIGLLPTYETIGVMAPILLVLLRIVQGISAGGEWGGAVLMAVEHAPRKKRGIFGASPQIGVPLGLLLASGVMALMTVIAPGDQFLAWGWRVPFLLSVVLILVGYYVRRRVEESPVFAELAERKEKAKMPIVQLFRKHLLLVIIAALVFAGNNAVGYMTTGGYIQGYATNPEGPIGLERGPVLWAVTGSAVTWLLTTLLAGWVSDRIGRRTTYLIGWVLQLVGVFTLFPLVNTGEVGLLFAGLAILTIGLGFTYGPQAALYTELFPASIRFSGVSISYAIGAIAGGAFAPTIATFIVDQTGSTEAVTWYLAGMTLLGLVATLLLRDRSGIPLGPDHEEEQSVSPIRGLAKA
>NZ_CP014313.1|WP_025103812.1|2343491_2344964_-|fumarylacetoacetate-hydrolase-family-protein
MTDTIARPGKIIAIHLSYASRADQRGRRPAHPSYFFKPASSVGVSGGTVERPAGTELLAFEGEIALIIGAPARRVALADAWDHVQWVTAANDLGLYDLRANDKGSNVRSKGGDGYTPLGPELIDARTVDPAALRVRAWVNGELRQDDTTAGLIFPLAQLVADLSQHFTLETGDVILTGTPAGSSVIVPGDVVEIEVDAPDAPGAPTSGRLVTTVTQGDVPFDGDLGSLPAVDDLQRTEAWGSRELAGLPAEDTAPTLTPELRAQLLEAPTAGLSAQLRKRGHHSCFIDGVSANLPDTKIVGTAKTLRFVPFREDLFRSHGGGYNAQKRAFDAVAAGEVIVIEARGDATTGTLGDILALRAQTRGAAGVVTDGGVRDFQAVAEIGLPVFSQGAHPSVLGRKHVPWDVDVTISCGGATVQPGDIIVGDSDGVIVIPPALAAEVAADAVAQEIEDAWIAEQVAAGHPVDGLFPMNAEWRARYEQATGTGAERK
>NZ_CP014313.1|WP_051582222.1|2342808_2343543_-|GntR-family-transcriptional-regulator
MARPLRAGDRHRSGAEVSTVESASKSEQAYAWIRARISAHTYGPGYRLVLGPIAEELGMSVVPVREAIRRLEAEGLVTFERNVGARVTLVDEGEYAHTMQTLGLVEGAATALSAPLLDADALAQAAEVNERMSRLLDHFDPHTFTELNRQFHSVLFEPCPNPHLLDLVHRGWARLSGIRDSTFAYVPGRAHHSVDEHTQILELIRDGAEPLEIELAARNHRWRTRDAFLDALHTRSVPAEGEAS
>NZ_CP014313.1|WP_025103821.1|2353848_2354697_-|PhzF-family-phenazine-biosynthesis-protein
MTDAPEVLRYSAFAATPDGGNPAGVVFDADGLDEADMQRIAAEVGYSETAFVQDAAADGSRFRVRYWSPAAEVPFCGHATVATAVALAERQGPGTVVFATAAGDVSMESFADADGRVTVSFTSVEPEVRDLDHVVRDRLLALLGMEPADVDPRFPVREAFAGNWHPIVFVADRELFHQFRFSPAEVATLMRAQGWHGTVTVLHAEDPAEIQARNLFPVGRITEDPATGSAAASVGAYLRAQGYPGDTVRIHQGAHVGRPSELRVAIPASGGLVVSGGATRLP
>NZ_CP014313.1|WP_025103822.1|2354723_2356451_-|thiamine-pyrophosphate-binding-protein
MPSVSAHVALTLAQHVDAVFGVMGNGNAYFLDALETQTDATFTAVRHEQGAVVAADAHFRASGRIAAGTSTYGAGFTNTITALAEAVQAHVPLVLVVGDEPTSGPRPWDVDQIALASAVGARTYTVGRTDAAATTVIAVEHALTYRVPVVLAIPYDVAALEAGAVPTAPAPRLPAPLAPRGDFAEGMLDEIAAALRDAERPFLLAGRGAWLAGAGEALGALAAQTGALTASSALGRGIFPDARYDLGVTGGFGAEGAMELVRTADVAVVFGASLNQFTMRFGDLFAPGTRVYQIDTAPAATHAHVGGFVRADARLAAEALVTRLSSGHDFGDAAGLAGAAPDSGGVSGADSAVVPARPWRETVDVAAARAYEPGDELAPDGRLDPRSAARRIAELLPEDRVVVSDGGHFIGWANMYWPVAAPDRMMMIGTAFQSIGQGWPSVVGAALARRDATIVLTSGDGGGLMAIADLESAVRAAGGRGMAVVWNDAAYGAEVNLYGLKGLAEGPMRIPEVDFAAFGAAVGAEGVVVRTLDDLDRLAAWSEEDPATRRFLVLDLRISGDVIAPYQQEIIRVNS
>NZ_CP014313.1|WP_025103823.1|2356611_2357121_+|phosphoribosyltransferase
MTDASIERETLTWDGFGAATRDLARDIIATGFEPEVVVAIARGGLLPAGAIAYGLGVKNCGAINVEFYTGIGTVLDAPEVLPPELDMAYLDGRRVLLVDDVADSGRTLALAVQLLQEKGADVRSVTIYTKPSTIIQPDFAWKDTDLWIDFPWSFRGTVRQEDEGLPPTA
>NZ_CP014313.1|WP_025103824.1|2357121_2358660_-|ATP-dependent-DNA-ligase
MLLSELVTTTDQVAATSSRLAKIEAIAALLRRADADDIAPLVGLLLATPRQGRLGVGWRGLTALAIEHSATSTLTIAEVDHAFDTLVHTSGSGSAGVRSALLHDLAARATAPEWDFLTRAMLGELRTGALGGVLLDAIARAAEAPAATVRRAAMLSGDLGETALLALTGAEGALDEVGLRVGRPVLPMLAATAPTPTAALEITGRASVEYKLDGARIQVHRRGDEVGIYTRSLADVTHRLPEIVEVVRGLPAQEVILDGETLALDEDGGPRPFQETMSRFGADAARELALRPWFFDVLHVDGRDLLDEPLSVRQEVLAEVAGEWRMPGIVTDSAEEAERLSREALAAGHEGVLVKAVDAPYAAGRRGKSWVKVKPVLTFDLVVLGAEWGSGRRRGRLSNLHLGARDPDGDFGDPGGFVMVGKTFKGLTDALLQWQTDEFPAHETHRSASTVFLRPELVVEIAIDGVQRSPRYPGGLALRFARVKGYRPDKTAAEADTIQTLLALRRGAADDS
>NZ_CP014313.1|WP_025103825.1|2358727_2359498_-|crotonase
MIDLAIADDVATVVLDAPAKLNALDEAALAELDAAYRDAEAAGVRALLLRGEGRAFCAGRDISAVDPRDDDVLGYLGGRVTPLLQRMSRFPAPTFAVAHGACLGVGLGLLIATDVVYVAESAKIGSPFAALGATLDSGGHALFLDRLGPHKTLDLIYTGWLMSGTEAVRSGLFSQVFPDDEVLAAATAAAGKAAHGATAAFRASKELVARIRDERLTLWESIDVENAAQAALCDTEDYREGFAAFQEKRKPEFRGR
>NZ_CP014313.1|WP_025103826.1|2359507_2360671_-|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK
MSLFSPAPATTPAPSPASPARARTRARFHTLEVEDVRPLTEDSVEVTFTVPAELADDYDHLPGQYVALRTTLDGVEVRRSYSLCRAPEHRTDGMPTRLSVAVKRDEGGTFSTWAQTGLRPGFRIDVMSPQGTFTSGLDDLDEKHVVGIAAGSGITPLMALAHTVLSRSQTSRFTLLYTNRSTLDVMFLEDLADLKDRYPTRLTLHHVLSREQRTAPVLSGRIDEPKLRTILDALIDPADVDEWFLCGPLALVDLCREVLADVGVPREHVRFELFTTGDEPVRAARPVTVRSGEKTVRIEVNLDGVSSTVESPVAARESVLNAALRVRPDAPFACAGGVCGTCRARVIEGSVTMTENYALEPDELERGYVLTCQSHPTSDRVVVDYDV
>NZ_CP014313.1|WP_025103827.1|2360670_2361174_-|phenylacetate-CoA-oxygenase-subunit-PaaJ
MVTRTAADAEAQAWRIAAAVPDPEVPVLTIEDLGVLRAVELRGERVVVDITPTYSGCPAMDTIRDDVVLALTAAGFADVEVRLVLSPAWTTDWMSDAGKQKLREYGIAPPSGRAAVPAGPIRLALSVRCPRCGSLDTREVSRFGSTSCKALYECRACLEPFDHFKVH
>NZ_CP014313.1|WP_025103828.1|2361167_2362058_-|phenylacetate-CoA-oxygenase-subunit-PaaC
MTLRQAQGPSPAQGPSSAEGVGDVHGEAHGEVSVDELRLSEELAGAGTTAASADIAEYALWLGDDALILSQQLGAWISRAPELEEDVALGNIALDLLGHARSFLHFAGTWDGRSEDDLAYFRDEPEFRSAWIMEQPNGDFAQTIARQLVASVYLVELYTALRASSEPTFAAIAEKALKEVDYHRDHAVQWVLRLAGGTEESRRRMIRALADVWPYVDELFRDEPLIDRLGDVAVRPSTLRAPFDAVIATVFAEAELTVPEVPGSSAGGRNGAHATPFGHLLAEMQVLARRHPGASW
>NZ_CP014313.1|WP_025103829.1|2362054_2362384_-|1,2-phenylacetyl-CoA-epoxidase-subunit-B
MATPGADPSTSSGTQGREVWPLWEIFVRANRGLSHVHVGSLHAPDADMAIRNARDLYTRRGEGVSIWAVPAEAITTSDPDAKGAYFESPAGKNYRHAVYYTASEGVPHL
>NZ_CP014313.1|WP_025103830.1|2362383_2363379_-|1,2-phenylacetyl-CoA-epoxidase-subunit-A
MTSPADLSLVDGETSDEERLFDELIANEQRIEPRDWMPEAYRKTLIRQISQHAHSEIIGMQPEGNWITRAPSLKRKAILMAKVQDEAGHGLYLYSAAQTLGITRDEMMEQLISGKAKYSSIFNYPTPTWADMGAIGWLVDGAAICNQVPLCRASYGPYGRAMVRICKEESFHQRQGFEILLSLMRGTDEQRQMAQDAVDRWYWPSLAMFGPPDDQSPNSAQSMAWKIKRFSNDELRQRFVGMLVPQAEILGVTLPDPDLRFDEETGRYEMGEIDWDEFFQVLRGNGPCNAERLERRRTAHEEGAWVREAAAEYARKQRSRLSRERVEGAVA

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Crispr_ID: NZ_CP014313_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014313_4

3241249-3241359

Orphan

Consensus_repeat	Method
CCGCTCCGCAGGCCGAGGCTCCCGCCGCGCCGGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014313_4

>merge|NZ_CP014313|4|3241249-3241359|CRISPRCasFinder
CCGCGGCTCAGCCCGAGGCTCCTGCCGCTCCGCAGGCCGAGGCTCCCGCCGCGCCGGCCCCGCAGGCCGAGACTCCGGCTGCACAGCCCGATACTCCGGCTGCTCCCGCTC

>NZ_CP014313|4|4|3241249-3241359|CRISPRCasFinder
CCGCGGCTCAGCCCGAGGCTCCTGCCGCTCCGCAGG	CCGAGGCTCCCGCCGCGCCGGCCCCGCAGGCCGAGACTC
CGGCTGCACAGCCCGATACTCCGGCTGCTCCCGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014313.1\|WP_025103584.1\|3237681_3239160_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP014313.1\|WP_025103594.1\|3248916_3249639_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379374
NZ_CP014313.1\|WP_025103580.1\|3233409_3234426_+\|flagellar-biosynthesis-protein	unknown	unknown	gnl\|CDD\|379596
NZ_CP014313.1\|WP_025103595.1\|3249731_3250121_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014313.1\|WP_025103582.1\|3235216_3236458_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|235640
NZ_CP014313.1\|WP_036292426.1\|3245963_3246452_+\|ATP-dependent-zinc-protease	unknown	unknown	gnl\|CDD\|226553
NZ_CP014313.1\|WP_025103596.1\|3250117_3250402_+\|WXG100-family-type-VII-secretion-target	unknown	unknown	gnl\|CDD\|274862
NZ_CP014313.1\|WP_101848647.1\|3246455_3246839_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP014313.1\|WP_025103581.1\|3234524_3235220_-\|F420-0--gamma-glutamyl-ligase	unknown	unknown	gnl\|CDD\|376711
NZ_CP014313.1\|WP_025103578.1\|3231571_3232609_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143481
NZ_CP014313.1\|WP_025103585.1\|3239165_3240539_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235798
NZ_CP014313.1\|WP_025103579.1\|3232620_3233289_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143481
NZ_CP014313.1\|WP_025103589.1\|3244757_3245945_-\|RimK-family-alpha-L-glutamate-ligase	unknown	unknown	gnl\|CDD\|182468
NZ_CP014313.1\|WP_025103593.1\|3248627_3248813_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014313.1\|WP_025103577.1\|3231326_3231545_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014313.1\|WP_025103588.1\|3243989_3244700_+\|DUF4191-family-protein	unknown	unknown	gnl\|CDD\|379389
NZ_CP014313.1\|WP_025103592.1\|3246998_3248423_+\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|273198
NZ_CP014313.1\|WP_036292541.1\|3229033_3231148_-\|type-IIA-DNA-topoisomerase-subunit-B	unknown	unknown	gnl\|CDD\|235501
NZ_CP014313.1\|WP_157544461.1\|3242391_3243825_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014313.1\|WP_025103583.1\|3236625_3237567_-\|PAC2-family-protein	unknown	unknown	gnl\|CDD\|378251

Protein	Function_ID	Function_description	E-value
NZ_CP014313.1\|WP_025103594.1\|3248916_3249639_+\|hypothetical-protein	gnl\|CDD\|379374	pfam13796, Sensor, Putative sensor. This family is often found at the N-terminus of proteins containing pfam07730 and pfam02518. The N-termini of proteins containing these two domains often function in stimulus sensing.	0.00887306
NZ_CP014313.1\|WP_025103580.1\|3233409_3234426_+\|flagellar-biosynthesis-protein	gnl\|CDD\|379596	pfam14397, ATPgrasp_ST, Sugar-transfer associated ATP-grasp. A member of the ATP-grasp fold predicted to be involved in the biosynthesis of cell surface polysaccharides.	1.34335e-21
NZ_CP014313.1\|WP_025103582.1\|3235216_3236458_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|235640	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.	0
NZ_CP014313.1\|WP_036292426.1\|3245963_3246452_+\|ATP-dependent-zinc-protease	gnl\|CDD\|226553	COG4067, COG4067, Uncharacterized protein conserved in archaea [Posttranslational modification, protein turnover, chaperones].	2.66599e-40
NZ_CP014313.1\|WP_025103596.1\|3250117_3250402_+\|WXG100-family-type-VII-secretion-target	gnl\|CDD\|274862	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target. Members of this protein family include secretion targets for the two main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from pfam06013. The best characterized member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have a long C-terminal extension.	2.5852e-06
NZ_CP014313.1\|WP_101848647.1\|3246455_3246839_-\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	1.20723e-07
NZ_CP014313.1\|WP_025103581.1\|3234524_3235220_-\|F420-0--gamma-glutamyl-ligase	gnl\|CDD\|376711	pfam01996, F420_ligase, F420-0:Gamma-glutamyl ligase. F420-0:Gamma-glutamyl ligase (EC:6.3.2.-) is an enzyme involved in F420 biosynthesis pathway. It catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0). This reaction produces polyglutamated F420 derivatives. GTP + F420-0 + n L-glutamate -> GDP + phosphate + F420-n.	5.41528e-08
NZ_CP014313.1\|WP_025103578.1\|3231571_3232609_-\|hypothetical-protein	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	4.37024e-66
NZ_CP014313.1\|WP_025103585.1\|3239165_3240539_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP014313.1\|WP_025103579.1\|3232620_3233289_-\|hypothetical-protein	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	1.54999e-31
NZ_CP014313.1\|WP_025103589.1\|3244757_3245945_-\|RimK-family-alpha-L-glutamate-ligase	gnl\|CDD\|182468	PRK10446, PRK10446, 30S ribosomal protein S6--L-glutamate ligase.	2.0584e-100
NZ_CP014313.1\|WP_025103584.1\|3237681_3239160_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	3.11218e-174
NZ_CP014313.1\|WP_025103588.1\|3243989_3244700_+\|DUF4191-family-protein	gnl\|CDD\|379389	pfam13829, DUF4191, Domain of unknown function (DUF4191).	5.17202e-75
NZ_CP014313.1\|WP_025103592.1\|3246998_3248423_+\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|273198	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation. [Amino acid biosynthesis, Glutamate family].	0
NZ_CP014313.1\|WP_036292541.1\|3229033_3231148_-\|type-IIA-DNA-topoisomerase-subunit-B	gnl\|CDD\|235501	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.	0
NZ_CP014313.1\|WP_025103583.1\|3236625_3237567_-\|PAC2-family-protein	gnl\|CDD\|378251	pfam09754, PAC2, PAC2 family. This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits.	2.35229e-30

>NZ_CP014313.1|WP_025103585.1|3239165_3240539_+|dihydrolipoyl-dehydrogenase
MTTHTFDIVVLGGGSGGYAAALRASELGKSVALIEKDKVGGTCLHRGCIPTKALLHAAEVADHVRDASSVGVTASFGGIDVAGVRTYREGIVAKKYKGLEGLVKARGITTVTGLGRLNADRSVSVGDDVYVGTDVILATGSYSRSLPGLEIGGRILTSEQALALDVIPERVLILGGGVIGVEFASVWRSFGAEVTIVEALPHLVPNEDIAMSKGLERAFRRRGIQYSLGVRFQSATQDDSSVTVTLEDGTEFTADYLLVAVGRGPATADLGFEEAGVRLDRGFVTVDGDLRTDVPGVWAVGDIVPGLQLAHRGFQQGIAVAERIAGLSPVNVPDVQIPKVTYSSPEVASVGLTEEAAVAAHGADAVHSYEYNLAGNGKSEIIGTGGLVKVVRLKDGPVLGVHLLGDRVGELITEGQLAVAWEAHPEDIAPLIHAHPTQSEALGEAFLALAGKPLHAL
>NZ_CP014313.1|WP_025103584.1|3237681_3239160_+|leucyl-aminopeptidase
MTLPVLSHTTDQFPGSAADAAVLVVPDLSESAESLAAHPGLADVLAGIGFTGAAGAFARVYAPEVTTLPFAVVGVGSTIDDASVRSAAGTALRSLTGFDTVSLGLASGLEAHAAAAAEGAVLGGYRFDDYRAENGRKKRATAVVVHAPLDDATIARAHATGEAVALIKDLVNVPAEWQSPAQLAQSAADSVADLDVTVQILDETALAEQGFGGILGVGQGSDRPPRLVRLDYAPADAQRHIALVGKGITFDTGGLSLKPAASMVGMKFDMAGAATSLAALRAIAALRLPVHVTAWLCITDNMPSGRALRPGDVIRILDGTTVEVLNTDAEGRLVLADGLVAASRENPDVIIDVATLTGAIVAALGHRHTGVFGDDETVAEFLAAAARTGEPAWHMPLPAYMEETLDSPIADMINANMGDRMGGASFAGLFLRRFVGRTSDADDAPRIPWVHLDIAGSGEHAGAPYGFTEKGPTGAMVRSIIAFAEAASHPEA
>NZ_CP014313.1|WP_025103583.1|3236625_3237567_-|PAC2-family-protein
MPFSGEIHERVANAPTVPHGLPLVMLLTGFTDAGSAVSGLIDHLRETTSPQPLAIFDNDVLLDYRARRPVISFDQDHLAEFRPPRLELSLATDALGRPFLLLTGYEPDFAWNAFAETVLDLAAEFEASGLHWVHSIAMPVPHTRPIGTTVSGNRRDLVVSHSVWRPRTQVPATAGHLLEYRFAERGERVVGFVLLVPHYLAETENPEAVSAAAEKLMASTGLVLMLDAVQERRADYIARVDEQVAANDELQQMVHNLERRYDAYMAGRDPEDDSYDEGGFSERDLPSADELAAELERYLATRPSGDDDKPGRG
>NZ_CP014313.1|WP_025103582.1|3235216_3236458_-|RNA-polymerase-sigma-factor
MTPATTKNTRTKKADQITADPEVEDVEATEAAPAPKRAAAKRAPAKKKKSDDVVEEDDAAAAEGSEDAAGDEEEDDAKPAFTEPLPTGAIVISSKDDEEVPVYSTQITGATADPVKDYLKQIGKVALLNAAEEVELAMRIEAGLFAEEKLSAMSPAEKTSQLGLDLQWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELSRELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDTEAVVPADAVGFTMLQRQLEQLLDSLSEREAGVIRMRFGLGDGQPKTLDQIGDTFGVTRERIRQIESKTMAKLRHPSRSQSLRDYLE
>NZ_CP014313.1|WP_025103581.1|3234524_3235220_-|F420-0--gamma-glutamyl-ligase
MMQANEGKALEASVDGKSYARIPLRTRVVMPDDDLDAIITEYAKDAVQPGDLLFVTEKIVAITQGRSYRLDEIKPRKLALFLSKYVTRTPYGIGLGMPETMEMALRECGTPRILFAAAVSAVTKAFGRKGDFYRIAGDKARAIDGPTKHTIPPYNEAVVLGPKDPDRVAAHLKTLIGGQAEVAVVDINDLGGNILGSTLDKAGELRLVKILGDNPLGQGLESTPLGIVRAV
>NZ_CP014313.1|WP_025103580.1|3233409_3234426_+|flagellar-biosynthesis-protein
MSRLSLAPRIRYLLGRARRIDVGSVFERAKEASAQHHRPVPTIVADMLWSAARHNVGFQDYIDYDFAMLNRAERETYMTHPVSNQLSQKYDHPDFRWIFQDKIEFNRKFSAHLHREWMVVEEGNADEVRALTERLGTIVTKEPVGQAGTGVHRYHAADITDWTEFHRGLLDRGELLIEEVIRQHDDLAAVCPGTVNTTRITAFFDGEKAHILAMAQKFGRGAVSDQMTFGGFYTMLDENGHAVGAGYDSHGHVHETHPDSGFRIADFQLPYMDEVRAFIDQVARVVPQVQYVGWDVVVTPDGPVLVEGNWGAGVYENKPSVTGIRTGHKPRYREVIGF
>NZ_CP014313.1|WP_025103579.1|3232620_3233289_-|hypothetical-protein
MISRSALAAGASAAIRAGGRRADLRRDAWGHGLLAVAQAVTAAGAEEVLVDSPGEVEALRLEGITATTTGEPDLDPRLLYGLPSAEGLPTTPPVMRLVGRVMSTKRLRAGEAVSYGYTFRAAADTTVALVTGGYAQGVVRALGNHADVEIDGALHPIVGRVAMDVCVIDLQGALAEVGDAVTYFGGTGPASGAIARWAELTRMTPAELVAVPGAHAVRGWEA
>NZ_CP014313.1|WP_025103578.1|3231571_3232609_-|hypothetical-protein
MRPELRLDSAVFRANIAAVRDRLGDSTLMLVLKDDAYGHGLRWAVETALEAGVTSFGSYDVRGGVEVRRIAGGEVTVFAWATSTDEEIDEALLQDIELGVGTVEYLRRIAARAEVLGVRARIHLKIDTGLHRNGVRPEDWAAAVAEARDAERSGALALVGVWSHIAEASDAEDDEAQAVFLDAVRQVGLTGPQPGSVHLTASAASWWRPELRGTVSRIGAFCYGIRSADGPDLDGVRPAARLVAPVVRVEGESAIVAVGSLDGVPSTLAGMTVGTPAGSRAVSTIDVATMTVEGWPGMAVGDEVTIFGPGAQGEETATTLAERIDTVGEEILTRLGPRIRRRVVD
>NZ_CP014313.1|WP_025103577.1|3231326_3231545_+|hypothetical-protein
MNATTERETSAVEYRLTAMDRCDSCGAQAYIAAEVNGSELLFCAHHGRKYEEKLRSVATSWHDETARLIETV
>NZ_CP014313.1|WP_036292541.1|3229033_3231148_-|type-IIA-DNA-topoisomerase-subunit-B
MVNAEYSAHHLQVLEGLEAVRKRPGMYIGSNGSPGLMHCLWEIIDNSVDEAVAGNGSRIDVILHDDGSVEVHDRGRGIPVDVEPRTGLTGVEVVYTKLHAGGKFGGGSYAASGGLHGVGASVVNALSERLDVEVDRGGKTYAMSFHRGEPGIFQDSGEKRPDAPFTPFEENSELRVVGKAPRGVTGTRVRYWADRQIFTKDAAFQLAELETRARQTAFLVPGLEIVVRDERAASAGVGEDGAPTGPVETSYLYEGGISEFVDYLAVDPPVTDTWRIQGEGTFTETVPVLQPDGHMVATEVERVCAVDIALRWGTGYDTRIRSFVNIISTPKGGTHQQGFEQELLKVLRSQVEQNARRLKVGNDKLEKDDVLAGLTAVLTVNVPEPQFEGQTKEVLGTPAVRQIVAQVMRKDLQQRFTSTKRDDKSQATQLLDKIVSEMKARVSARAHKETQRRKNALESSTLPTKLVDCRTNDVERSELFIVEGDSALGTAKNARNSEFQALLPIRGKILNVQKASVGDMLSNAECASIIQVIGAGSGRTFDIDAARYGKIILMSDADVDGAHIRTLLLTLFFRYMRPLIEHGRVFAAVPPLHRIIVINPGSKPNETIYTYSEQELHALLAKLRKAGKRWHEPIQRYKGLGEMDAEQLANTTMDRSGRLLRRVRMEDAEAAGRVFELLMGNEVAPRREFIIDSADQLSRESIDA
>NZ_CP014313.1|WP_157544461.1|3242391_3243825_-|hypothetical-protein
MTDERENPPFDQAVLPQAHRTIRLLDPGEGPLEGALVASPDGPVVRRDAEGLTGWAGWRYAGSQHVAAPLDVVRRARGHDVLLPWCTETLHVFLERAGRARGGLSSGEISTVVVSMLRGLSELGPMPAAEVPGAWWLTERGRPVFVPGAGQDAASAVLAVLDRLHADCADKALIRVLDRLREHLRTAAAQRRVPRRLLEEGERELLEIAAPRPLESATEDQTGASVGAATALRRLRADSATRSRLRETGVPRDRLRVRERATVVAALRAFLDHLSGRARALVRPREVAAPRGTERRSTRPRRARIFVVAGVCAAAVLVAGSLWPSGGEGSAVGSPDAGTATTARPSTSDPAHETSREPARSPMPSPTAGATPPAVDDPLAALPDVITRIAECESREDPVCATAIAGGAPAIRAVAAELIGGDDPVLVDRYGDIAVLELSSSSAAREGSGAGAMIVVLVWVDEKWLVRDAYRVADQPR
>NZ_CP014313.1|WP_025103588.1|3243989_3244700_+|DUF4191-family-protein
MAKRAPEPEKRPGFFSQIKSLFRFTREAYPWLPWAQAAILIGGVLLGLLAGYLIPPFQVWTLVLWAITGLMLGVLGALFLMTRLSTSAMYTKIDGMPGATGHVLSTSLGRQWQASETPVGINPKTQEAVYRTVGRGGIVVVGEGARGRLTRLVNEERSRAQRVAHGVPITVLYVGHGEDEVPIADLAKTIKKLPKAIDKATMAAVIRRIDSVSQSLSSLPIPKGIDPTKVRAQRPR
>NZ_CP014313.1|WP_025103589.1|3244757_3245945_-|RimK-family-alpha-L-glutamate-ligase
MKIAVLSRAPQAYSTQRLRAAALQRGHNVKVLNTLRFAIDLTSDEPDLHYRGRQLSDYDAILPRIGNSITYFGTAVVRQFEQMDVYTPNTANGISSARDKLRANQILSRHNIAMPPTAFVRNRADVRPAIERVGGAPVVIKLLEGTQGIGVILAPQVKVAEAIIETLHSTKQNVLIQKFIAESRGRDIRALVVGDRVVAAMRRSAAGDEFRSNVHRGGSVEAIELDPVYERAAVRSAQIMGLRVAGVDMLEGDEGPLVMEVNSSPGLQGIETATKLDVAGAIIDYIAGQVAFPEIDVRQRLTVSTGYGVAELMVHGAADLVGKTLGEAGLWERDITVLTLHRGVSVIPNPRKHVVLEADDRLFCFGKLDEMRSMIPERRRRRAKVRRLPKQPLSE
>NZ_CP014313.1|WP_036292426.1|3245963_3246452_+|ATP-dependent-zinc-protease
MYQVSRSTHSNTLTGWREWVSLPDLGVDWIKAKIDTGARTSSLHAFDIQEFERDGEAWVRFRVKPWQDSQEDAVVVESPIHDRRAVRSSSGHAQERLVVQLMIRLVDREVMAEVTLSNRDEMGFRMLIGREALRRGYVVDPARSFLGGRAPREARRRNRGRA
>NZ_CP014313.1|WP_101848647.1|3246455_3246839_-|RDD-family-protein
MNTYPGERLGLPESGPGSIGRPGRRIGALAIDWTAAVILSVAFFQYDPFATLLIFGVVQILFIPTAGGSPGHRILGMRVVRLDGGWVGLWRPIVRTLLLLIVIPAVVWDPDQRGLHDKAVGTVLIRA
>NZ_CP014313.1|WP_025103592.1|3246998_3248423_+|type-I-glutamate--ammonia-ligase
MFKDSSEVLAYIKENDVKFLDIRFTDLPGVQQHFNIPAATVDEAFFTDGQLFDGSSIRGFASIHESDMQLIPDVTTAYIDPFREASTLVMIFDIYNPRTGEIYSKDPRQVAKKAEKYLTSTGIADTAFFAPEAEFYIFDDVRYSVTAGESFYKVDSEEAAWNTGREEEGGNLANKTPYKGGYFPVSPVDKTADLRDDITLKLIDAGFILERSHHEVGTAGQQEINYRFDTMVHAADDILKFKYIVKNTAEEWGKVATFMPKPLYGDNGSGMHTHQSLWNDGKPLFYDEAGYGQLSDIARWYIGGILAHAPALLAFTNPTLNSYHRLVKGFEAPVNLVYSAGNRSAAIRIPITGSNPKAKRIEFRAPDASGNPYLAFAAQLMAGLDGIKNRIEPHEPVDKDLYELPPEEAKNIPQVPNSLLDSLEALRADHQFLLEGGVFTEELIETWISYKYENEILPIAQRPHPFEYELYFGV
>NZ_CP014313.1|WP_025103593.1|3248627_3248813_+|hypothetical-protein
MSQDYEVDTDVLRTMAAKTRRIVADIGATDLTPPTSAGHEWVVAEPLSGSPKPGLRASQPG
>NZ_CP014313.1|WP_025103594.1|3248916_3249639_+|hypothetical-protein
MMELGQTGSAVFTLAVVQPFQATMDMLAVSAQTLWEHPDIILELLGGAATFIGGAALAVGGAGLTVTGVGALAGAPAIAAAGIGVAGVGAGLIGDATGRSFRETDRASDSRKGVDRGDGRDTGGRYANGQEIRPWVDKEKVGLDEYASEAGVDVIRRKVHVTYEGAPQASRSYDGLVKNNDGSNTYTGIEVKSGSAIDEYGRASSTQRQFDDAVNAGTPARGKLDGDDIIITRVESRDVP
>NZ_CP014313.1|WP_025103595.1|3249731_3250121_+|hypothetical-protein
MLGHLDGERKLTYIIWPGSDPSSTVGFREPAGDTFMQAAGSADAMTVEVKLPGPDGESHLYTVGRAEPVDGTTTLIPISQTRAVRVFSNEVFTADEAAVIFYTYYLTDAVAQPYVLRELDLSQELSEER
>NZ_CP014313.1|WP_025103596.1|3250117_3250402_+|WXG100-family-type-VII-secretion-target
MRVAVRHDAISDTVARLALTVRRFEDALDGLDAEATLLRSSWSGEAHAAYDRAHHDWDTAIRGMKAALAEANRRLITANAISMETASTAARLWK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

183318 : 192014

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025105646.1\|183318_184377_-	D-2-hydroxyacid dehydrogenase	M1H3H9	Paramecium_bursaria_Chlorella_virus	8.8e-05	22.9
WP_025105645.1\|184540_185995_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	3.7e-30	25.4
WP_025105644.1\|186046_187297_-	FAD-binding oxidoreductase	A0A0B5JBT9	Pandoravirus	9.1e-25	42.4
WP_025105643.1\|187373_188045_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-32	42.5
WP_025105642.1\|188140_189607_-	ABC transporter permease	NA	NA	NA	NA
WP_025105641.1\|189771_190500_+	response regulator transcription factor	W8CYM9	Bacillus_phage	4.2e-30	34.0
WP_025105640.1\|190526_192014_+	HAMP domain-containing protein	W8CYF6	Bacillus_phage	7.0e-24	30.6

DBSCAN-SWA_2

408603 : 454541

Mycobacterium_phage(55.56%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062764892.1\|408603_409854_+\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_062764895.1\|409940_410336_-	hypothetical protein	NA	NA	NA	NA
WP_062764898.1\|410356_411049_-	response regulator transcription factor	NA	NA	NA	NA
WP_062764902.1\|411045_413541_-	sensor histidine kinase KdpD	NA	NA	NA	NA
WP_062764905.1\|413543_414158_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA
WP_062764909.1\|414180_416337_-	potassium-transporting ATPase subunit KdpB	M1HBF8	Paramecium_bursaria_Chlorella_virus	6.8e-28	24.9
WP_062764912.1\|416340_418011_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
WP_035731468.1\|418010_418100_-	potassium-transporting ATPase subunit F	NA	NA	NA	NA
WP_156198513.1\|418096_418264_-	hypothetical protein	NA	NA	NA	NA
WP_062764915.1\|418483_419050_+	hypothetical protein	NA	NA	NA	NA
WP_062764918.1\|419046_419595_+	hypothetical protein	NA	NA	NA	NA
WP_157544359.1\|419594_420158_+	hypothetical protein	NA	NA	NA	NA
WP_157544361.1\|420229_420568_-	hypothetical protein	NA	NA	NA	NA
WP_062764925.1\|421112_422381_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	7.7e-173	72.3
WP_157544473.1\|422440_423571_-	DNA (cytosine-5-)-methyltransferase	A5YK40	Mycobacterium_phage	2.7e-76	43.4
WP_082758359.1\|423854_427391_+	relaxase domain-containing protein	NA	NA	NA	NA
WP_062764936.1\|427569_427941_+	hypothetical protein	NA	NA	NA	NA
WP_157544363.1\|428156_429038_-	hypothetical protein	NA	NA	NA	NA
WP_062764939.1\|429246_429732_+	TIR domain-containing protein	NA	NA	NA	NA
WP_082758361.1\|429728_430214_+	HIT domain-containing protein	A0A2D1GDJ6	Mycobacterium_phage	7.9e-09	35.7
WP_062764942.1\|430164_430593_-	hypothetical protein	NA	NA	NA	NA
WP_157544365.1\|430782_433593_+	hypothetical protein	NA	NA	NA	NA
WP_046746337.1\|434008_435244_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	3.3e-112	52.5
WP_157544367.1\|435534_437250_+	hypothetical protein	NA	NA	NA	NA
WP_062764956.1\|437289_439101_-	hypothetical protein	NA	NA	NA	NA
WP_046746337.1\|440113_441349_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	3.3e-112	52.5
WP_082758363.1\|441392_442196_-	hypothetical protein	A0A2H4PDF8	Mycobacterium_phage	2.4e-26	39.1
WP_100226841.1\|443187_443802_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_062764969.1\|443824_444991_-	amidohydrolase family protein	NA	NA	NA	NA
WP_062764972.1\|445045_445951_-	phosphodiesterase	NA	NA	NA	NA
WP_005052798.1\|445969_446800_-	tyrosine-protein phosphatase	NA	NA	NA	NA
WP_005052797.1\|446796_447630_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_005052796.1\|447732_448323_-	SIS domain-containing protein	NA	NA	NA	NA
WP_082230727.1\|448238_448724_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_005052795.1\|448772_449123_+	hypothetical protein	NA	NA	NA	NA
WP_045245741.1\|449239_449449_-	hypothetical protein	NA	NA	NA	NA
WP_045245681.1\|449817_451071_+\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	2.5e-67	41.9
WP_082758367.1\|451166_452039_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_082758369.1\|452114_452996_-	hypothetical protein	NA	NA	NA	NA
WP_045245681.1\|453287_454541_+\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	2.5e-67	41.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014313

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection