CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013926	Alteromonas stellipolaris strain LMG 21861 chromosome, complete genome	0 crisprs	DEDDh,DinG,cas3,csa3,WYL	0	0	3	0
NZ_CP013927	Alteromonas stellipolaris strain LMG 21861 plasmid pASTE61-200, complete sequence	0 crisprs	NA	0	0	1	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

840244 : 849979

uncultured_Caudovirales_phage(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057793877.1\|840244_841864_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-31	34.8
WP_013785437.1\|842102_843929_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.3e-35	33.0
WP_057793875.1\|844253_846035_-	DNA primase	A0A1S5RFR1	Helicobacter_phage	6.0e-46	32.7
WP_057793873.1\|846176_846623_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	5.1e-23	41.8
WP_012517258.1\|846981_847197_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_057793871.1\|847587_848601_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.4e-108	57.1
WP_082604970.1\|848674_849979_+	alkaline phosphatase family protein	A0A0M3PB47	Turkeypox_virus	2.0e-43	32.3

DBSCAN-SWA_2

1094774 : 1103686

Streptococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057793528.1\|1094774_1096067_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	2.7e-133	59.3
WP_057793526.1\|1096126_1097758_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.3e-148	50.6
WP_057793524.1\|1097936_1100582_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.1e-32	21.5
WP_057793522.1\|1100874_1101363_+	CinA family protein	B5TK85	Pseudomonas_phage	1.5e-28	48.1
WP_057793520.1\|1101617_1102658_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.4e-119	64.1
WP_057793518.1\|1102879_1103686_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-25	32.1

DBSCAN-SWA_3

1331972 : 1342013

uncultured_Caudovirales_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013784150.1\|1331972_1332638_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.4e-35	45.2
WP_057791920.1\|1332752_1333142_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.4e-13	34.2
WP_057791922.1\|1333141_1333504_+	sulfur reduction protein DsrE	NA	NA	NA	NA
WP_057791924.1\|1333503_1333863_+	hypothetical protein	NA	NA	NA	NA
WP_057791926.1\|1334053_1334401_+	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
WP_057791928.1\|1334461_1335280_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_057791930.1\|1335482_1336775_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.0e-95	45.2
WP_057791932.1\|1336785_1337169_-	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	9.3e-05	32.6
WP_057791934.1\|1337174_1338509_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.4e-71	37.4
WP_057791937.1\|1338519_1339320_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_057791940.1\|1339325_1342013_-	DNA translocase FtsK	G1FGP1	Mycobacterium_phage	4.3e-88	51.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013927

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

110002 : 151121

Bacillus_phage(22.22%)

tRNA,integrase,transposase

attL 115110:115125|attR 147651:147666

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_156454880.1\|110002_110812_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.1e-43	37.2
WP_061093704.1\|110892_112053_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.8e-43	37.1
WP_061093705.1\|112316_112799_+	hypothetical protein	NA	NA	NA	NA
WP_061093706.1\|112916_114326_-	heavy metal sensor histidine kinase	Q8QKV7	Ectocarpus_siliculosus_virus	3.3e-07	22.4
WP_061093707.1\|114318_114999_-	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	1.7e-33	35.6
115110:115125	attL	NA	NA	NA	NA
WP_156454881.1\|115265_115640_+	hypothetical protein	NA	NA	NA	NA
WP_061093709.1\|115746_116274_+	ATP synthase F0 subunit B	NA	NA	NA	NA
WP_061093710.1\|116273_117632_+	TolC family protein	NA	NA	NA	NA
WP_082759604.1\|117631_119230_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_061093711.1\|119229_122367_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	5.9e-65	22.2
WP_082759606.1\|122402_122816_+	copper resistance protein CopC	NA	NA	NA	NA
WP_061093712.1\|122828_123758_+	hypothetical protein	NA	NA	NA	NA
WP_061093836.1\|123818_124292_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_061093713.1\|124503_124860_+	hypothetical protein	NA	NA	NA	NA
WP_061093714.1\|125238_125667_+	MerR family DNA-binding protein	NA	NA	NA	NA
WP_082759608.1\|125711_128087_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.5e-92	33.3
WP_061093715.1\|128096_128453_+	cupredoxin domain-containing protein	NA	NA	NA	NA
WP_061093716.1\|128535_128823_+	YHS domain-containing protein	NA	NA	NA	NA
WP_061093838.1\|128840_129080_+	hypothetical protein	NA	NA	NA	NA
WP_061093717.1\|129122_129770_+	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_061093718.1\|129812_130181_+	hypothetical protein	NA	NA	NA	NA
WP_061093719.1\|130738_131122_+	hypothetical protein	NA	NA	NA	NA
WP_156454882.1\|131184_131742_+	hypothetical protein	NA	NA	NA	NA
WP_061093721.1\|131713_131923_+	hypothetical protein	NA	NA	NA	NA
WP_167542104.1\|131946_132726_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.7e-90	65.8
WP_061093723.1\|132827_133265_+	hypothetical protein	NA	NA	NA	NA
WP_061093724.1\|133323_133704_+	DMT family transporter	NA	NA	NA	NA
WP_156454883.1\|134036_134192_+	hypothetical protein	NA	NA	NA	NA
WP_061093725.1\|134461_135277_+\|tRNA	methionyl-tRNA formyltransferase	NA	NA	NA	NA
WP_061093726.1\|135824_136118_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_061093839.1\|136288_136654_-	hypothetical protein	NA	NA	NA	NA
WP_156454884.1\|136754_136901_-	hypothetical protein	NA	NA	NA	NA
WP_061093727.1\|137699_138437_-	glutaredoxin	NA	NA	NA	NA
WP_061093728.1\|138472_138982_-	DUF305 domain-containing protein	A0A1V0SJW0	Klosneuvirus	5.9e-07	30.9
WP_061093729.1\|138998_139412_-	hypothetical protein	NA	NA	NA	NA
WP_061093730.1\|139433_140198_-	copper resistance protein B	NA	NA	NA	NA
WP_061093731.1\|140207_142046_-	copper resistance system multicopper oxidase	NA	NA	NA	NA
WP_061093732.1\|142258_142714_+	hypothetical protein	NA	NA	NA	NA
WP_061093733.1\|142777_144088_+	APC family permease	NA	NA	NA	NA
WP_061093734.1\|144281_145520_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_156454885.1\|145750_146182_+	hypothetical protein	NA	NA	NA	NA
WP_061093737.1\|146264_146951_-	PAS domain S-box protein	NA	NA	NA	NA
WP_061093738.1\|147152_147425_+	HU family DNA-binding protein	A7KV42	Bacillus_phage	1.1e-15	49.4
WP_061093739.1\|148087_148321_+	hypothetical protein	NA	NA	NA	NA
147651:147666	attR	NA	NA	NA	NA
WP_082759630.1\|148391_149111_-	hypothetical protein	NA	NA	NA	NA
WP_061093741.1\|149100_149727_-	hypothetical protein	NA	NA	NA	NA
WP_057792844.1\|149984_151121_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013926

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013927

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection