CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014322	Alteromonas addita strain R10SW13 chromosome, complete genome	1 crisprs	cas3,DEDDh,DinG,csa3,WYL	0	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014322_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014322_1

4372254-4372379

Orphan

Consensus_repeat	Method
CAGGGATGCGGCAGCGGAGCATGCGCTTAAACAAAATTCCTGAGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014322_1

>merge|NZ_CP014322|1|4372254-4372379|CRISPRCasFinder
CAGGGATGCGGCAGCGGAGCATGCGCTTAAACAAAATTCCTGAGGGCGGGTGAAGAGCCTGCTTCATGACCCTCTGCCGCAGGGATGCGGCAGCGGAGCATGCGCTTAAACAAAATTCCTGAGGGC

>NZ_CP014322|1|1|4372254-4372379|CRISPRCasFinder
CAGGGATGCGGCAGCGGAGCATGCGCTTAAACAAAATTCCTGAGGGC	GGGTGAAGAGCCTGCTTCATGACCCTCTGCCG
CAGGGATGCGGCAGCGGAGCATGCGCTTAAACAAAATTCCTGAGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014322.1\|WP_057795477.1\|4365739_4366186_+\|DUF3015-family-protein	unknown	unknown	gnl\|CDD\|378601
NZ_CP014322.1\|WP_062088531.1\|4366279_4367380_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349484
NZ_CP014322.1\|WP_062089152.1\|4374101_4375580_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014322.1\|WP_062088536.1\|4371506_4371917_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227639
NZ_CP014322.1\|WP_062088539.1\|4372025_4372241_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014322.1\|WP_013786447.1\|4367758_4368325_-\|elongation-factor-P-like-protein-YeiP	unknown	unknown	gnl\|CDD\|179863
NZ_CP014322.1\|WP_057795465.1\|4372646_4373036_+\|DUF4440-domain-containing-protein	unknown	unknown	gnl\|CDD\|226769
NZ_CP014322.1\|WP_057795471.1\|4370975_4371482_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223637
NZ_CP014322.1\|WP_057795453.1\|4381410_4381602_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|182452
NZ_CP014322.1\|WP_062088534.1\|4370574_4370979_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225197
NZ_CP014322.1\|WP_062088530.1\|4363887_4365717_+\|DUF4105-domain-containing-protein	unknown	unknown	gnl\|CDD\|379156
NZ_CP014322.1\|WP_062088555.1\|4376465_4379081_-\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|223964
NZ_CP014322.1\|WP_061998034.1\|4380413_4381193_+\|siderophore-interacting-protein	unknown	unknown	gnl\|CDD\|99790
NZ_CP014322.1\|WP_062088561.1\|4381716_4382238_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014322.1\|WP_062088564.1\|4382227_4383076_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014322.1\|WP_156454654.1\|4379758_4379935_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014322.1\|WP_062088552.1\|4373219_4374047_+\|acid-phosphatase	unknown	unknown	gnl\|CDD\|319836
NZ_CP014322.1\|WP_167347553.1\|4375585_4376452_-\|outer-membrane-lipoprotein-sorting-protein	unknown	unknown	gnl\|CDD\|379924
NZ_CP014322.1\|WP_062088528.1\|4362865_4363636_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP014322.1\|WP_062088532.1\|4368691_4370527_+\|DUF885-domain-containing-protein	unknown	unknown	gnl\|CDD\|377577

Protein	Function_ID	Function_description	E-value
NZ_CP014322.1\|WP_057795477.1\|4365739_4366186_+\|DUF3015-family-protein	gnl\|CDD\|378601	pfam11220, DUF3015, Protein of unknown function (DUF3015). This bacterial family of proteins has no known function.	1.08345e-05
NZ_CP014322.1\|WP_062088531.1\|4366279_4367380_-\|hypothetical-protein	gnl\|CDD\|349484	cd18174, M14_ASTE_ASPA_like, Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like; uncharacterized subgroup. A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.	1.67811e-85
NZ_CP014322.1\|WP_062088536.1\|4371506_4371917_-\|hypothetical-protein	gnl\|CDD\|227639	COG5331, COG5331, Uncharacterized protein conserved in bacteria [Function unknown].	3.24781e-14
NZ_CP014322.1\|WP_013786447.1\|4367758_4368325_-\|elongation-factor-P-like-protein-YeiP	gnl\|CDD\|179863	PRK04542, PRK04542, elongation factor P; Provisional.	7.96332e-121
NZ_CP014322.1\|WP_057795465.1\|4372646_4373036_+\|DUF4440-domain-containing-protein	gnl\|CDD\|226769	COG4319, COG4319, Ketosteroid isomerase homolog [Function unknown].	3.16679e-09
NZ_CP014322.1\|WP_057795471.1\|4370975_4371482_-\|AAA-family-ATPase	gnl\|CDD\|223637	COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism].	2.83196e-15
NZ_CP014322.1\|WP_057795453.1\|4381410_4381602_+\|CsbD-family-protein	gnl\|CDD\|182452	PRK10428, PRK10428, hypothetical protein; Provisional.	1.43468e-18
NZ_CP014322.1\|WP_062088534.1\|4370574_4370979_-\|hypothetical-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	3.29763e-19
NZ_CP014322.1\|WP_062088530.1\|4363887_4365717_+\|DUF4105-domain-containing-protein	gnl\|CDD\|379156	pfam13387, DUF4105, Domain of unknown function (DUF4105). This is a family of uncharacterized bacterial proteins. There is a highly conserved histidine residue and a well-conserved NCT motif.	8.21292e-51
NZ_CP014322.1\|WP_062088555.1\|4376465_4379081_-\|MMPL-family-transporter	gnl\|CDD\|223964	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only].	6.04487e-35
NZ_CP014322.1\|WP_061998034.1\|4380413_4381193_+\|siderophore-interacting-protein	gnl\|CDD\|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	1.4402e-78
NZ_CP014322.1\|WP_062088532.1\|4368691_4370527_+\|DUF885-domain-containing-protein	gnl\|CDD\|377577	pfam05960, DUF885, Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.	0
NZ_CP014322.1\|WP_167347553.1\|4375585_4376452_-\|outer-membrane-lipoprotein-sorting-protein	gnl\|CDD\|379924	pfam17131, LolA_like, Outer membrane lipoprotein-sorting protein. This is likely to be a family of outer-membrane lipoprotein-sorting proteins.	1.90212e-57
NZ_CP014322.1\|WP_062088528.1\|4362865_4363636_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	2.15088e-07
NZ_CP014322.1\|WP_062088552.1\|4373219_4374047_+\|acid-phosphatase	gnl\|CDD\|319836	cd07534, HAD_CAP, molecular class C acid phosphatases, similar to Haemophilus influenzae e (P4) acid phosphatase; belongs to the haloacid dehalogenase-like hydrolase superfamily. Molecular class C acid phosphatases (CAPs) are nonspecific acid phosphatases with generally broad substrate specificity and optimum activity at neutral to acidic pH. Members include Haemophilus influenzae lipoprotein e (P4), Elizabethkingia meningosepticum OlpA, Helicobacter pylori HppA, Enterobacter sp. 4 acid phosphatase PhoI, and Streptococcus pyogenes M1 GAS LppC. Lipoprotein e (P4) exhibits phosphomonoesterase activity with aryl phosphate substrates including nicotinamide mononucleotide (NMN), tyrosine phosphate, phenyl phosphate, p-nitrophenyl phosphate, and 4-methylumbelliferyl phosphate. The role of P4 in NAD+ uptake appears to be the dephosphorylation of NMN to nicotinamide riboside, which is then taken up by the organism. Elizabethkingia meningosepticum OlpA is a broad-spectrum nucleotidase with preference for 5'-nucleotides, it efficiently hydrolyzes nucleotide monophosphates, with a strong preference for 5'-nucleotides and for 3'-AMP; OlpA can also hydrolyze sugar phosphates and beta-glycerol phosphate, although with a lower efficiency. Helicobacter pylori HppA is also a 5' nucleotidase. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.14296e-37

>NZ_CP014322.1|WP_062088539.1|4372025_4372241_-|hypothetical-protein
MKHTLHSHSETLLCGVNRQSVTRWDSVYERIPLAGAKQNAMGGIKQDGKSDFVIGDGDSKRAAVYVSVIEL
>NZ_CP014322.1|WP_062088536.1|4371506_4371917_-|hypothetical-protein
MDNLVVPMFAHVLLCTFLYMILTFVRAPKVWAIGRNDDGSNPFDAIQSKISANLSNQFEWPLFFHVICVVLIVKGLELQPIYIALAWVFVVGRIVHSMVQIMTSNIKLRGIVFMLNFLAVLAMWGLFVAETVVAQS
>NZ_CP014322.1|WP_057795471.1|4370975_4371482_-|AAA-family-ATPase
MTKIVVFGNSGSGKSTLAKNLVKVHHIAHLDLDSVAWAPSNSITSPPSRMPISESTVLIERFLTDNTSWVIEGCYSDLLAEVLPRADELIFLNLPMKLCVENAKARPWEPHKYESKQAQDANLDMLIDWIKEYENRTDTFSKQSHQALYDSFGGAKTMYTSNNHSEAP
>NZ_CP014322.1|WP_062088534.1|4370574_4370979_-|hypothetical-protein
MTYDEFNHYCGSLKATTYVMQWNNSHVWKVGGKVFAIGGLSKTGEPAYIFKTSDLNYHFLSEKPGYRPAPYFASRGMKWIQQFGGAEAQTKMAGKQSTEDLDEELSYYLHESYKIVSLGLTKKKQKELGLNQIQ
>NZ_CP014322.1|WP_062088532.1|4368691_4370527_+|DUF885-domain-containing-protein
MHHIVIFVVIITIINCSIFKASPAIANETDELRNQQLTELASLTTNEAMLNSGERLAKSSELYFEYTLLLWPELGTYMGFEKHQDKWSDSSIARHEKYTEETNKWFNLFKSIDPTNLSKEDRLNLTILIYTLETEIAREQFDGMLMPINQLSGIYQDTARVLAMMPVRNEHDLNNIIARLSGIEMEVTHTIEWMKLGLKKGITPPKVTLTNIPDILNNQLAVDIEKSPYLTAFASKPEMVSQQTFNSLKAQAQKIVKNSVHPSLEMLHDFMVNEYIPRSRETIGLSNLPNGKAWYTVNIQEFTTTSLTPKQIHELGLKEVARIRKEMEQLITSSGFEGSFDEFLHFLRHDPQFYFTDAEDLLREYRNIAKKADAELPKLFGLLPRTPYGVIPVPAYAEKSQTTAYYEPGSLDAGRAGNFFANTYQLASRPKYEMEALTLHEAVPGHHLQVALQQEMQDTPWFRKIPMYTGFVEGWGLYAESLGEDMGFYQDPYSKFGQLTFEMWRAMRLVVDTGIHVFGWTRQQSIDYFMANSGKTEHDVTVEVDRYIVWPGQATAYKVGELKIKALRAKAEASFGENFDIREFHDVVLGSGAVPLTILEDNVNEWIAAEN
>NZ_CP014322.1|WP_013786447.1|4367758_4368325_-|elongation-factor-P-like-protein-YeiP
MPKASEIKKNHTIVYGGKTCIVRDIERSVPQGRAGGSIYRMRMYDVVSGAKFDETFKDSDMLEMADLVRRPVMFSYIDGDEYVFLDNEDYTPYHLNKESIADEALFINEKTESIQVLIVSDVPVALDLPMSVELEVTETDPSIKGASATSRTKPATLSTGLVVQVPEYISTGEWIKVNTEERKFQSRA
>NZ_CP014322.1|WP_062088531.1|4366279_4367380_-|hypothetical-protein
MNFKTYPWVSIVSFCILLAGHGASAKDIDVAGTLVAEGSREDIIIPVGAGGNNSAELETFIPVTVINGVKSGPVLATIAGVHGYEYNSILATEKWLANIDPSTLTGTIIAVRVAHIPAFEEKSIYVNPHDRKNLNRSFPGKEDGTQTEQIAWNLSNHVIAKADFVIDLHSGDGAEWLAGFVGVYGGPLSSNYNQAMLVAEGFNFPNIVTYKMNTQKQVDTRRSLNRQAVAHGAPTILVEIGENGSKKEEHVNAMVKGLEEATRILGITSPSTINNSKAALTSQGASASRYFEGTFSVSVNFSGLWFPEITTGQFLKKGDTLGVVKDYFGNTVETVIAPESGFALYGLSGPSVKQGQSIMTIAKEVK
>NZ_CP014322.1|WP_057795477.1|4365739_4366186_+|DUF3015-family-protein
MFKKLTLAALLTTTAIAGNVSADDNINPWKHCGIGAAIFDDNGTAAAISNIIWDLGTTAVSSKVSSADSCEGKMATAAVFIQNNFNNVIEETSQGSGAHLTAMLDILDVNEAARADVVTAVRAEMALSVAANEATSPEAFYNAVVANI
>NZ_CP014322.1|WP_062088530.1|4363887_4365717_+|DUF4105-domain-containing-protein
MYSFFTRCCIIFFCTVTLAYANNASQNINNLASHSVWKQLLHTEQTAVTLNHNNSNFYLAENGFEDPLSELEATIRAFSQTPKRQCQFPARKRFIEKHIPSISFPDVACPKYQEYLNTFSTHSASLIFASGYLGNPASMFGHVFLKFNGESADGLLDNTFSYGAKVPDNENKLVYITKGILGGYQGKFSNQQYHHHHLTYSETELRDMWEYKLALSQHDIQFLLAHLWELENATMTYYFFEQNCAYQLAKLLSLVFDEPLIAPNKVWVMPFDLVVMMQRHQSSRPMFNEVIYHGSRQQTLYDRWQQLTDKEQQTLLQILKSEPEDTQAKLAALGGASAIRVIDTLYDYFAFIEQKEDDLTTIQQAQKRQAMIKRFAMAPVKPNWKSVDRRPPHEAQDTTRIGLGLYDTPSGDVAGELNFRANYYDLLTLNAGRIPYSELTTFNLRLRYLEGEGLAVKEFTPVRIINLNTSESGLPLDSNWAWKLAFGYREQANNCTHCGAGYIDSFIGKSWAFRHNLVGYAALSTSITSSNLNGGFIAVGSEVGGVAHVTSEIAMSLAVGQQWFVNQPSKDQHYLSITARYSINQRWDVRANIDNKHGTNFGLLISHYY
>NZ_CP014322.1|WP_062088528.1|4362865_4363636_-|sulfite-exporter-TauE/SafE-family-protein
MDLITYWLTADGAISLTTAAVLITTSTITSLITATFGIGGGVLLIAVMAGSLPVSALIPVHGLVQLGSNGNRALMTFRYIDWSMVKFFSFGALLGAVVATFIVVQLPLVVIQFAVAGFILFLVWGSKPKAQEMQPVGRSLAGLVTTLISMFVGATGPLVAAFVHRNNYNKMQITATMASCLTFQHGLKSFVFTFVGFSFFQWLGLIFAMIISGAVGTYVGLKVLKKIPADKFLVLFKVIVTLLAIRLIVQAVSDLV
>NZ_CP014322.1|WP_057795465.1|4372646_4373036_+|DUF4440-domain-containing-protein
MNNITQLLARLHNAVNDNDPDSVSACYGDNAKVISTPLKGTAQHDCVSALQTFQHKYMPEHIVTTGDEIVIEAGDVALVIAKLYLVPKAAPHALPCDGKRAVYVMQRNDSGEWRCIIDNFFGTDLLDFA
>NZ_CP014322.1|WP_062088552.1|4373219_4374047_+|acid-phosphatase
MFTTASTSLKTALRPIAVSCLALSALSACVTTKQADTAAATAPEASFSLSNSVKYQRQSKEYPLLSAYVYKQATAALPATFENQQTPAVIVLDVDETVLDNSLYQEERESKGLGYSSESWNAWIKREEATLVPGVDKFLATVIERGGKIALITNRDKTLDSHTWNNLLAVGLPLTPSNTCIMGRLPADKDAVDHKYIVNDKDRRRNAVKQGSPACSITNDTAINGWNKPHNIIMQIGDNIEDFQGVTQEDAYLPAILPEVGTSLFILPNPMYGSW
>NZ_CP014322.1|WP_062089152.1|4374101_4375580_-|hypothetical-protein
MRGKKLRGLALLAAALLETSVSLPVYSQELKNEIAKDVPVKTEQVDNPEATSEDDWEDEGWSDDNLENEGWDDDSWSDDNWDNEDWGEQGKNATAYTFSGFVELAAGNRVANDTTVASSSTLRDARVQLRADYTLAASKLSFRGDAWYDGVKHQREFQIRELAWQGNLAALGEWGNAFDLKVGQQVLTWGTGDYVFLNDLFPKDYQSFFSGRDDEYLKAPSASIKLSGYWEAINIDVVVTPDFEPDIGITGEVFSFFSPEVNGNVAPAYSVTHANTPSGSEVALRAHRTFSSSFGSVEAALYGYRGYTKQPTAVDELGAPRYSRLNAIGASVVMPLGKGIANAEYAYYRSVEDSEGTLPSVSNSQSRFLLGYSQEVMVNVTGGVQWYTEAIQHHDALLTHSAYPEFEQEAYRHWVTTRLTWQAWRQTLTLNSFLFYSPTDNDGYLKASASYSPTDKWQVRGGVNLFSGDEPHTFFAQFEDASNVYFAFRYFY
>NZ_CP014322.1|WP_167347553.1|4375585_4376452_-|outer-membrane-lipoprotein-sorting-protein
MLQIAKVSYVSSHITASKTAVRILAASMMVLGIFGSASASAAEENIASIIAKSEKAAYYAGGDGKSMARMIIVDSQGRKQMRQFTILRKDVLDNEGTETGDQKMLVFFSRPTEVKGTVFRVEKRTNINTDDDRWLYLPALDLVKRIAAGDKRTSFVGSHFFYEDVSGRAVSEDNFTMQNTTDTHYVLRATPKNVGSVEFSHYIVEIDKQTYLPTLINFFKGDDNYRRVEAMSVETVQGYPTVVRSKVSDLASGGYTLMEFRGIQYDIALPDSVFSERSLRVPPREFVE
>NZ_CP014322.1|WP_062088555.1|4376465_4379081_-|MMPL-family-transporter
MKLAIDVLLHVSTHKGRWVYFFLAVLTAFAAFQMRLIQIDTDPENMLAESHSARTFHNEVKQTFAMHDAIVVGLVVADDLAKGDGAKDGEAKDDQVKDGIYTPENLAAIHQVTNHVLALEGVISQDVMAFSTVDNIKQGSDGSLEFSWLMASPPETASASAQLRDSIEKLPLLYDTLAASSGNAAAIYIPIADKNESYRIAQDIRAYLANVDTAGQWHITGLPVAEDQFGVEMFVQMAIAAPAAGAMIFILLFLFFRNWSLVTAPMIVAMGTVIITMGALIGMGFTVHIMSSMIAIFLMPIAVVDSVHILSEFSDRYKPGENAGKVITQVVEHLFKPMLFTSLTSSAGFFSLMLTPIPPVQIFGAYIGFGILLAFLITLTFIPAYISRMSPAALNKLQVALHQSEEVGNSEGSSTLLKRTVNKLRYIALNHRALIIAVFGAITLVSAWGITQININDNPVRWFKQDHEIRVADKALNAEFAGTYNAYLVITDTNESTDASKMLNEAQLPASLDEWVEQTQATINQSDDANKMSELAMRIDDALFSNLNDDEQTALESLLQVVDVANGHTNTFQQPKVLKHIEGLQSYLATQPLIGKTQSLVDVVKVVNRELRSGNETDYALPANNRGVAQTLMQYQSSHRPQDLWHFVTPDYRQTLIWLQLTSGDNQDMTNVISLVEDYFAKNPLPQGLSYDWAGKAYLNVVWQENMVTGMLESLLSAFVIVFVMMVLLFRSFVFGVLAMLPLTITITFIYGLIGIVGKDYDMPIAVLSALTLGLSVDFAIHFLARAREIYKETGSVPDTLDAMFDEPASAITRNALVIALGFTPLLLAPLVPYITVGVFLASIMAVSALVTLLVLPSAMVFLKRWVFKGA
>NZ_CP014322.1|WP_156454654.1|4379758_4379935_-|hypothetical-protein
MLSGDSTLIISMTLLVFLNMAIAEGIMPGQQSQIGYNPLLHMDINVCASDVGIQQQSR
>NZ_CP014322.1|WP_061998034.1|4380413_4381193_+|siderophore-interacting-protein
MSKPAPRVVEVIDSFRVTPNMQRIVLGGPTLEDFPETRPGAYVKLLFDLNGNPIVKPAKDSPVAMRTYTINSFDRQKAQMTIDMVVHVKDGVTGPAAAWALSAKEGDKLTIAGPGSSKALAEDYEWVLFAGDMTALPSIRNYLQALPSHTKGIAVIAIEHELDATVLEKPEGVSIQWVSKKEATLSDALQRTNWPQGTPAVWVACEFSQMRKIRSWLKDEKQVPHSQVYISSYWREGRSEDQHKIDKRQDVEAFAKQLA
>NZ_CP014322.1|WP_057795453.1|4381410_4381602_+|CsbD-family-protein
MNNDRIEGNWKEMKGKVQQQWGKLTDDDLDVIDGRREELVGKIQQAYGKSREEAEKEVDSHFN
>NZ_CP014322.1|WP_062088561.1|4381716_4382238_-|hypothetical-protein
MKTKFIAFLAAIVMTGCASQPDYRQASNGGFGYTESKLSETQYRVHFKGRGSDKSKAMDYAMYRSAELTLLKGYDWFVVTDRETMVDKERVQTSPQVGFSQRYARVTECGVITCRTSYHPTTQFESGIFVGGSQKSEIESILNIEMGKGTRPTSATSFDAREISNNLKPDTES
>NZ_CP014322.1|WP_062088564.1|4382227_4383076_-|hypothetical-protein
MIISDEMLSAFLDAELSDEDMEYVRASIASDLALSDRLASLAQVDMMVKAAADAATQKPLPNSVVAMLADDVSSEAYLEQADFDSDHVSSSHAGERIPRNVTSLNRKPKESRRSGKWKVPLSLAAGVALVAGLTWMQSEQTAPLDPASTSSTNSHWANVSKALDNNLTGEMMVTDAGMEIVPQLSFMNNQSQLCRQAQIQGEDELNIMIACKNGQGIWQLHASKLITAGRDKSEYQTASANKVLDEEIGLLMVSTPLNREQEKQAINHGWQSKAAEGVVNEN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014322_1	1.1\|4372301\|32\|NZ_CP014322\|CRISPRCasFinder	4372301-4372332	32	NC_011981	Agrobacterium vitis S4 plasmid pAtS4e, complete sequence	11094-11125	6	0.812

1. spacer 1.1|4372301|32|NZ_CP014322|CRISPRCasFinder matches to NC_011981 (Agrobacterium vitis S4 plasmid pAtS4e, complete sequence) position: , mismatch: 6, identity: 0.812

gggtgaagagcctgcttcatgaccctctgccg	CRISPR spacer
agttaaagagcctgctgcatgactctctgcag	Protospacer
.* *.*********** ******.****** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1086299 : 1095205

Streptococcus_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057793528.1\|1086299_1087592_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	2.7e-133	59.3
WP_057793526.1\|1087651_1089283_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.3e-148	50.6
WP_062086170.1\|1089461_1092101_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.1e-32	21.5
WP_057793522.1\|1092393_1092882_+	CinA family protein	B5TK85	Pseudomonas_phage	1.5e-28	48.1
WP_057793520.1\|1093136_1094177_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.4e-119	64.1
WP_057793518.1\|1094398_1095205_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-25	32.1

DBSCAN-SWA_2

1308564 : 1318593

uncultured_Caudovirales_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013784150.1\|1308564_1309230_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.4e-35	45.2
WP_061997315.1\|1309344_1309734_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	3.2e-13	34.2
WP_061997316.1\|1309733_1310096_+	sulfur reduction protein DsrE	NA	NA	NA	NA
WP_062086318.1\|1310095_1310455_+	hypothetical protein	NA	NA	NA	NA
WP_057791926.1\|1310645_1310993_+	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
WP_057791928.1\|1311053_1311872_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_062086320.1\|1312074_1313367_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.1e-94	45.0
WP_057791932.1\|1313377_1313761_-	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	9.3e-05	32.6
WP_061997320.1\|1313766_1315101_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	6.8e-71	37.2
WP_062086322.1\|1315111_1315912_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_062086324.1\|1315917_1318593_-	DNA translocase FtsK	G1FGP1	Mycobacterium_phage	4.2e-88	51.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage