CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014274	Stenotrophomonas sp. KCTC 12332, complete genome	25 crisprs	csa3,cas3,DEDDh,DinG,RT,PD-DExK,WYL	0	6	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014274_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_1

303432-303564

Orphan

Consensus_repeat	Method
CCCCCTCTCCCCAACCCCTCTCCCGCAAGGGGAGAGGGGCT	CRISPRCasFinder

1 spacers

DEDDh,csa3

The CRISPR arrays of NZ_CP014274_1

>merge|NZ_CP014274|1|303432-303564|CRISPRCasFinder
CCCCCTCTCCCCAACCCCTCTCCCGCAAGGGGAGAGGGGCTTGTAGTGCCGAGCTATGCTCGGCAGAGGCTTTACCGGTAGTGTCTAAAAGCCCCCCTCTCCCCAACCCCTCTCCCGCAAGGGGAGAGGGGCT

>NZ_CP014274|1|1|303432-303564|CRISPRCasFinder
CCCCCTCTCCCCAACCCCTCTCCCGCAAGGGGAGAGGGGCT	TGTAGTGCCGAGCTATGCTCGGCAGAGGCTTTACCGGTAGTGTCTAAAAGC
CCCCCTCTCCCCAACCCCTCTCCCGCAAGGGGAGAGGGGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062166148.1\|314169_315318_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
NZ_CP014274.1\|WP_062166146.1\|309611_310793_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|169982
NZ_CP014274.1\|WP_062166140.1\|299148_299703_+\|DUF2939-domain-containing-protein	unknown	unknown	gnl\|CDD\|378575
NZ_CP014274.1\|WP_062166147.1\|310805_313970_+\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
NZ_CP014274.1\|WP_062166149.1\|315445_316375_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|369777
NZ_CP014274.1\|WP_062166134.1\|293220_293748_+\|3-hydroxyanthranilate-3,4-dioxygenase	unknown	unknown	gnl\|CDD\|183930
NZ_CP014274.1\|WP_062166144.1\|303720_308703_-\|glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|377452
NZ_CP014274.1\|WP_062166143.1\|302607_303372_-\|NAD-kinase	unknown	unknown	gnl\|CDD\|179876
NZ_CP014274.1\|WP_062166136.1\|295091_296462_+\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|223727
NZ_CP014274.1\|WP_062166141.1\|299718_301092_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224983
NZ_CP014274.1\|WP_062166142.1\|301563_302508_-\|5'-nucleotidase	unknown	unknown	gnl\|CDD\|377624
NZ_CP014274.1\|WP_062166138.1\|297897_298584_+\|DUF2461-domain-containing-protein	unknown	unknown	gnl\|CDD\|274138
NZ_CP014274.1\|WP_062166151.1\|317486_318089_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|236057
NZ_CP014274.1\|WP_062166145.1\|308949_309612_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
NZ_CP014274.1\|WP_062166137.1\|296461_297901_+\|exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979
NZ_CP014274.1\|WP_062166153.1\|320996_321680_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062166135.1\|293798_295073_+\|kynureninase	unknown	unknown	gnl\|CDD\|130873
NZ_CP014274.1\|WP_062166139.1\|298655_299129_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176856
NZ_CP014274.1\|WP_062166150.1\|316396_317476_+\|5-methyltetrahydrofolate--homocysteine-methyltransferase	unknown	unknown	gnl\|CDD\|236539
NZ_CP014274.1\|WP_062166152.1\|318088_320923_+\|methionine-synthase	unknown	unknown	gnl\|CDD\|236539

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062166148.1\|314169_315318_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	4.89147e-172
NZ_CP014274.1\|WP_062166146.1\|309611_310793_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|169982	PRK09578, PRK09578, MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit.	2.35782e-96
NZ_CP014274.1\|WP_062166140.1\|299148_299703_+\|DUF2939-domain-containing-protein	gnl\|CDD\|378575	pfam11159, DUF2939, Protein of unknown function (DUF2939). This bacterial family of proteins has no known function.	8.16088e-24
NZ_CP014274.1\|WP_062166147.1\|310805_313970_+\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NZ_CP014274.1\|WP_062166149.1\|315445_316375_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	3.11715e-25
NZ_CP014274.1\|WP_062166134.1\|293220_293748_+\|3-hydroxyanthranilate-3,4-dioxygenase	gnl\|CDD\|183930	PRK13264, PRK13264, 3-hydroxyanthranilate 3,4-dioxygenase; Provisional.	3.87519e-106
NZ_CP014274.1\|WP_062166144.1\|303720_308703_-\|glutamate-dehydrogenase	gnl\|CDD\|377452	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase. This family consists of several bacterial proteins which are closely related to NAD-glutamate dehydrogenase found in Streptomyces clavuligerus. Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyze the reversible oxidative deamination of glutamate to ketoglutarate and ammonia.	0
NZ_CP014274.1\|WP_062166143.1\|302607_303372_-\|NAD-kinase	gnl\|CDD\|179876	PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed.	8.18177e-160
NZ_CP014274.1\|WP_062166136.1\|295091_296462_+\|FAD-dependent-monooxygenase	gnl\|CDD\|223727	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion].	8.55854e-38
NZ_CP014274.1\|WP_062166141.1\|299718_301092_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	8.11972e-81
NZ_CP014274.1\|WP_062166142.1\|301563_302508_-\|5'-nucleotidase	gnl\|CDD\|377624	pfam06189, 5-nucleotidase, 5'-nucleotidase. This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (EC:3.1.3.5).	5.5794e-153
NZ_CP014274.1\|WP_062166138.1\|297897_298584_+\|DUF2461-domain-containing-protein	gnl\|CDD\|274138	TIGR02453, conserved_hypothetical_protein, TIGR02453 family protein. Members of this family are widely (though sparsely) distributed bacterial proteins about 230 residues in length. All members have a motif RxxRDxRFxxx[DN]KxxY. The function of this protein family is unknown. In several fungi, this model identifies a conserved region of a longer protein. Therefore, it may be incorrect to speculate that all members share a common function.	1.25686e-93
NZ_CP014274.1\|WP_062166151.1\|317486_318089_+\|short-chain-dehydrogenase	gnl\|CDD\|236057	PRK07578, PRK07578, short chain dehydrogenase; Provisional.	5.50496e-112
NZ_CP014274.1\|WP_062166145.1\|308949_309612_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	5.31681e-09
NZ_CP014274.1\|WP_062166137.1\|296461_297901_+\|exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0
NZ_CP014274.1\|WP_062166135.1\|293798_295073_+\|kynureninase	gnl\|CDD\|130873	TIGR01814, kynureninase, kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. [Energy metabolism, Amino acids and amines].	0
NZ_CP014274.1\|WP_062166139.1\|298655_299129_+\|hypothetical-protein	gnl\|CDD\|176856	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity, and may regulate the dwell time of Hsp90 with client proteins. Aha1 can act as either a positive or negative regulator of chaperone-dependent activation, depending on the client protein, but the mechanisms by which these opposing functions are achieved are unclear. Aha1 is upregulated in a number of tumor lines co-incident with the activation of several signaling kinases.	0.00167671
NZ_CP014274.1\|WP_062166150.1\|316396_317476_+\|5-methyltetrahydrofolate--homocysteine-methyltransferase	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	0
NZ_CP014274.1\|WP_062166152.1\|318088_320923_+\|methionine-synthase	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	0

>NZ_CP014274.1|WP_062166143.1|302607_303372_-|NAD-kinase
MSPRIAFLASTVESAQQARAALAARYGDHNPEKADVICPLGGDGFMLQTLHRHGSKGKPVFGMKLGTVGFLMNHHREDDLIQRLALAEPAHLRPLEMIALTESGTTTGSLAYNDVSMLRQTRQAAHIGIDLNGQQRVEELICDGVLVSTPAGSTAYNYSAHGPILPLGSNTIALTPLAPYRPRRWRGAILKAETEVRFRVLDPYKRPVSVTADSHETRDVVEVTIRESRERQVTLLFDPEHNLEERILSEQFMV
>NZ_CP014274.1|WP_062166142.1|301563_302508_-|5'-nucleotidase
MGDNTPRLLTVAVTSRALFDLEEGHALFEREGLEAYAAYQRAHEDDVLKPGVAFPVVRKLLALNDGAPVETPRVEVILLSRNSADTGLRIFNSIQHYKLDIVRATFTAGEPTWPYVKPFGTDLFLSANPDSVRRALVNGIAAATILPQSAQEVAAASAAATDTGRSKTQLRIAFDGDAVIFGDESERISREQGVEAFGRHERERAHEPLSGGPFRNFLSALHALQAAFPAGEAAPIRTALVTARSAPAHERVIRTLREWGVRLDEALFLGGRHKGPFLEAFGADIFFDDSQHNIDSARQHVAAGHVPHGVANPD
>NZ_CP014274.1|WP_062166141.1|299718_301092_-|NAD(P)/FAD-dependent-oxidoreductase
MTMRIAILGAGPSGLAQLRAFESARRGGAEVPEIVCYEKQSDLGGMWNYTWRTGLDAYGEPVHGSMYRYLWSNGPKEALEFADYSFEEHFGRPIASYPPRAVLRDYIMGRIEKSGVRDQIRFNMAVQWVDYSEETERFTVTVRDLKKDELISEEFDHVIVATGHFSTPNAPFFEGVDRFPGRVLHAHDFRDACEFTDKDLLLVGASYSAEDIGTQCYKYGAKSVTFSYRSAPTGYDWPAAFEEKPLLQRVEGTTAHFIDGSSKQVDAIVLCTGYQHHFPFLPDALTLRTRNRLYPGDLYKGVFWIDNPKLIYLGMQDQYYTFNMFDAQAWYARDVILGKIALPSGDAMRADSAAWLAREEATTSAEQDIDFQTEYVRDLLDATDYPDFNVEAVATLFKQWKHDKKDDILGYRNYSYRSVLTGTLAPPHHTPWMQAMDDSLEAFLADSALEERPRRIA
>NZ_CP014274.1|WP_062166140.1|299148_299703_+|DUF2939-domain-containing-protein
MKKWILAAVVAVAVLLAAYVIGGPYLAIRGISQAIEQRDTGKLARHVDFAAVRVNMKAQLNDYVVRRAGADVQSSLFGQVALGVAGNLAGAGVDTFVTPLGIAAILQGDSLWKRAIGDTVGGDTWAPPSPAKPLANTTGHYESFSRFTATTHLEDGREVVFVLSRQGLRWRLTNILLPLGQAPG
>NZ_CP014274.1|WP_062166139.1|298655_299129_+|hypothetical-protein
MTSIHLQVWIDAPLATVHAGLASAEGLGQWWIPHQHSVIDGDNVLSHNPGSGHGVVAMKVLENTARGCVRWEVISRHPPQSPASAWTGTEIRFDLSRRASPGAWRGLPHEGEPMTVLEFHHLGWNGDSEYLGFCSQAWAETLVMLRRWAEAGGADHA
>NZ_CP014274.1|WP_062166138.1|297897_298584_+|DUF2461-domain-containing-protein
MTQYFSDASFKFLRGLARHNDKTWFAEHKQQYEDHVRQPFLRLITDLQPDLSAVSPHFQADPRTVGGSLFRIYRDSRFSHDKAPYKTWQGARLFHERRKQVPAPSYYIHLAPGESFVGAGIWHPEPDVQRRLRQFILDNPGSWKAAAHAPATRKRYEFESSEKLVRAPRGFPADFEFIDDLKHRNWVLWRSLDDDVMTGPRLRQTLAKDLAALGPFVDYLCAALDLEF
>NZ_CP014274.1|WP_062166137.1|296461_297901_+|exodeoxyribonuclease-I
MAESFLFYDLETFGQDPRRTRIAQFAAVRTDAELKVIEEPVSFYVKPADDLLPSPIATLITGITPQHALAEGVSEADAFARINELMSKPQTCTLGYNTLRFDDEFVRYGLFRNFHDPYEREWRSGNSRWDLLDMLRLVHALRPEGINWPQREDGATSFKLEHLALANDVREGDAHEALSDVYATIGMARHFRQAQPRMWDYALRLRDKRYVGSLLDVVAMTPVLHISMRYPASRLCAAPVLPLARHPHINNRVIVFDLEGDIEPLLELSVEEITARLYTRAADLPEGQQRIPLKEVHLNKVPALVAWNHLRDADFERLQIDPAAIEAKAEKLRALGPQLAEKARQVFARERVNEGPIDADASLYDGFLAEGDKGLLSKVRTAPPEALAELEQRFRDPRLPELLFRYRARNHPQTLDATARSRWDAYRQQRFSTPGLAEQTLPEYVAQIAALREEHKDNPASLALLDALDQWRHTLQDTP
>NZ_CP014274.1|WP_062166136.1|295091_296462_+|FAD-dependent-monooxygenase
MNTPTPRSLTLIGAGLAGSLLAILLSRQGWKITVYERRGDPRIADYESGRSINLALAERGRNALRQAGVEDEVMAKAVMMRGRMVHPRDGAPDLQRYGRDDSEVIWSVHRKDLNTTLLQLAEQAGAKIHFHRRLHTVDFDAGYARFIDDRDDQPHDIHFNTPLIGADGAGSALRAAMNRKRPLGERTEFLDHSYKELEIPPAADGSFQIEANALHIWPRGNYMCIALPNDEGTFTVTLFLPNEGEPSFATVRNGAEAEALFRRDFADTLPLIPDLRADWDQHPPGLLGTLFLDRWHQCGKAVLIGDAAHAMVPFHGQGMNCAFEDCVVLARCLADNATTEQAFAAFEAERKPNAAAIQQMALDNYLEMRDRVADPAYLLQRELEHELQARWPTRFVPHYTMVTFLHTPYAVALERTHLQQAILAAATAGLDTLEGVDWTALERIVHAQLPVLEGAH
>NZ_CP014274.1|WP_062166135.1|293798_295073_+|kynureninase
MNETLSPAHATALDAADPLRHLRSQFLIPQHQGSDQTYFVGNSLGLQPRGAQAMVQEVMDQWARIAVEGHFTGPTQWLSYHRLVRDSLAGVVGALPHEVVAMNTLSVNLHLMMVSFYRPTSERPAILMEAGAFPTDRHAVEAQIRFHGFNPATDLIEVQPDEANGTISMQAIERAISEHGKRVALVLWPGVQYRTGQVFDLAAITRLARAQGASIGFDLAHSVGNVPLALHDIAPDFAVWCHYKYLNAGPGAVAGAFVHERHAKDTSLPRFAGWWGHEQATRFQMAPEFVPELGAEGWQLSNPPVLGLAPLRASLALYDEAGMAALRTKSLKITGYLETMVRARLEHVLQIITPSEPERRGCQLSLRVAGGRAQGRSLFEYLQSVGVLGDWREPDVIRISPTPMYNRYSDVYRFVDEVETWAGV
>NZ_CP014274.1|WP_062166134.1|293220_293748_+|3-hydroxyanthranilate-3,4-dioxygenase
MLPLPLNLHGWIEEHRHLLKPPVGNKMIENGEFIVMVVAGPNSRSDYHWDEGPEWFYQLEGEMVLRVQEDGAVRDIPIRAGEIFLLPPRVPHSPQRMPGSIGLVVERKRLDHELDGFMWFCQQCNHKLYEEFFHLKNIETDLPKVFDRFHTSLAHRTCQHCGAVHPLPKPATPEV
>NZ_CP014274.1|WP_062166144.1|303720_308703_-|glutamate-dehydrogenase
MKSQNSAAKSVKTKSKPVVKQNIADAGLSLEPVFAALRKRYPAAAAQAQAVAFATAFYKRMEADEFKLHSADDWAVLAAGMLEFARTRKPGKANVRAFNPTLKADGWESAHTVLQIVNDDMPFLVDTVTLALAEQGIGVHVLGHPVISIARDKAGKLSSVGNGALESVMLLEIDRQPADALDAVAKRVTAALDDVRAIVNDWQPMTDKALALAEDLGKRTLPVTKASRAEAQEFLRWAADNHFTFFGYREYKVEKKGKEEVLVAQNGTGLGLMRGKDTMVARPVKGLAAEGLNATSSLHDALILTKTNARSHIHRGGYMDYIGVLEFDAKGKIIGEQRFLGLFTSSAYNRRPWEIPLVRQRYENVMARSGLSLSSHSGKALRHILESLPREELFQSSEDELFRTAMGVLGLQERVRSRLFLRRDKFSRFISALVFLPRERFNTDVRLRVESMLKDALQGEYVDSSVVLGDSPLAQVHLIVRPKAGQSLELDVEGMEKRLAHVLRNWQDDLREALVNSHGEGEGLRIASRIGKALPAGYIEDSSAEIAAADVAQLDALTGPDDLRLSLQAIRREGVDGLRLKLYRQLEDIPLSDVLPMMENMGLRVIAERPYKLMVDEAPVYVQDFEVESTIGAIDPVSANAAFGEAFARVWHGDAENDGFNRLVLGAGLDWRQVAMLRGYCKYLLQIGVPFSQAYVEGTFNRYPLLARLIVELFEARFEPTPSADKAVLDAQLAQFKQLAGDDAATLKLLDGVVKARKSDRAARMALVHEVLVKLLDGVSSLDEDRILRSFIGVIEATLRTSYYMVRKDGVRADGGPADYISFKFDAAKVPDLPKPRPYREIFVCGPRVEGTHLRFGPVARGGLRWSDRREDFRTEVLGLVKAQMVKNTVIVPVGSKGGFFAKQLPDPSVDRDAWFAEGVACYKRFINGLLDITDNIVNNKIVPPQGVVRHDMDDPYLVVAADKGTATFSDTANGIARAHGFWLDDAFASGGSVGYDHKGMGITARGAWESVKRHFRALGRDCQKQDFTVVGVGDMSGDVFGNGMLLSEKIRLVCAFDHRHIFLDPNPVAASSFKERARMFKVPRSSWADYDSKLISKGGGIYPRSLKSIEITPEVRDALGIDAGIKAMNPTDLINAALKAPVDLLWNGGIGTYVKSASETNADVGDRANNALRVNGGELRCKIVGEGGNLGMTQLGRIEAAQVGVLLNTDFIDNSAGVDTSDHEVNIKILLNDVVRAKKLTVDQRNKLLASMTDEVGELVLMDNYRQNQALSLMERMSSKRLGSKQHFIRTLEKQGLLDRQIEFLPSDAELSARKLRGQGLTRPELAVLLSYSKIVAFQQLLESDIPEDPYLSKELLRYFPQPLQKKYADAMERHRLKREIIATAVTNQTINRMGATFLMRMQEDTGRTVAEVAKAYTISRETLDARALWTQIDALDGTLPEAVQVDALEVIWKLQRSFVRWLLTRPGTMPGITAAVERYQGPFNDIRVASGVLPDSQRPAYEASVVAWKEKGLPAALAQQLSELQFLEPAFDIIELARPRKLKPVDVSKVHFRLGEALQMPWLFEQIDALEVNGRWHAVARGVLRDELAAHQRALAGQVLSMKGATAEAKVAAWLGRDDSGLRFTLAMLAELAEQKTLDYPTVSVAVQRLGQLAAHGA
>NZ_CP014274.1|WP_062166145.1|308949_309612_+|TetR/AcrR-family-transcriptional-regulator
MPNPSTSPAPVDARDERVFEAVRELLATQGIRLSMDAVAAAAGCSKQTLYSRYGCKRELLRQAMQLHVNTTTAALVVDEDKPLREILLDFAIGYLEHRNKPNARRTAQLIGASAHEFRDEAQYMYQGSSEALRNHVAEWMHTETRRRRLNHDDPHFMAELLISMIAGQDFERQRFHAPHRDDPLHRRRWAEFAIDGFLRAFAPAQEAPTASNKNNTRSFS
>NZ_CP014274.1|WP_062166146.1|309611_310793_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MTASLRILALTCAATLSLAACKKPQEQAAPPPPEVGVVEAKPQTLPLQRELVGRLSPFRSADVRARVAGVLQKRVYEEGSTVKEGQVLFLIDPAPLQASLASAEGALASARASYVNARATASRARSLAPQSYVSKSDLDNAEAAERSAAAAVQQAEAAVTSARINLGYARVTAPIAGQAGKQQVTEGALVGQGDVTLLTTVDQIDPLYVNFSMTADELSLLRAAQDKGAVALAGDGKTTVQVNLPDGSAYGHEGSLDFSSTTVDPATGTVSLRAQLPNPDHILLPGSFVSFKANLGERHNAFLVPQQAVQRDTQGGYVLIVGKDGKVARKNIILDNQQGSNWLVSSGLAAGDQVIVSGVQKVKEGAPAAAKPWQPDAAKPAAGAPAAAPAKKE
>NZ_CP014274.1|WP_062166147.1|310805_313970_+|multidrug-efflux-RND-transporter-permease-subunit
MPKFFIEHPVFAWVVAILISLGGVISILNLGIESYPSVAPPQVTVTANYPGASASTAEKSVTQVIEQQLTGIDNLMYFSSSSASNGRTTITLTFDSGTNADIAQVQVQNKVSLATPRLPSEVTKQGVVVAKANAGFLMAVGVRSDDGNVDRDALNDIVGARVLEQISRVPGVGSTQQFGSEYAMRVWLNPEKLQGYHLSATDVYNAIGTQNLQFAAGSLGGDPAPNGQAFTATVAAEGRYSSPEEFENTILRANSDGSLVRLKDVAKVSFGATNYGYDTKYNGKPVAVFAIQLLPGANALDVSEAVRAKMDELAPSFPPGVSWFTPYDSTTFVTISIEEVIHTLVEAIVLVFLVMLIFLQNFRATIIPTLVIPVALLGTFMGMLAIGFTINQLTLFAMVLAIGIVVDDAIVVIENVERIMSEEKLGPKPATQKAMSQITGAVVAITVVLAAVFIPSALQPGASGEIYKQFALTIAMAMGFSALLALTFTPALCAAFLKPTHNERPNWVYRTFNKYYGKLEKSYVGTVGGVIKHTPRWLMVFALLLVLCGFLFTRLPGSFLPEEDQGYALAIVQLPPGATKTRTTAVFDQLLGTLQKEDAFEGLMQITGFSFIGSGENVGMAFVRLKDWSERNETAPEFIQKMNQKAYGIKDAQIFFVNLPTVQGLGQFGGFDMWLQDRTGAGQEALMNARNTLLGAAGQDKSLVGVRPNTLENAPQLQLKVDRVQAQAMGVSANDVYTAIQMMLAPVYVNDFFYGGRVKRVNMQADAAYRTGPESLNSYFVPSSLSKDATGQPAMIPLSAVVKSEWIYAPPALNRYNGYSAVNIVGAPAPGNSSGQAMSTMERLVRDDLPVGFGYDWSGMSYQEIIAGNAATLLMVLSIVVVFLCLAALYESWSIPVSVLLVVPIGILGAVVFSLLRGLPNDLYFKIGMVTVIGLAAKNAILIVEFAVEQRAAGKTLREATIEAAHLRFRPILMTSFAFILGVLPMAISTGAGANARHSLGTGVIGGMLFATVIGVLLIPLFFVSVRRMLGDKLDEQSKEYIEQHKVRAVQEDR
>NZ_CP014274.1|WP_062166148.1|314169_315318_-|acyl-CoA-dehydrogenase
MDFSFSDEQLMLQDVARRIAKEKIAPSAEHFDATGEYPLENIRLLGENGLMGIEVPVEYGGSGMDPISSVLAIIEVSAADAAHATIMSVNNSLFCNAVLGYGTEAQKQTYVRAIAEGAEIGAFALTESQSGSDATAMRCCAVKQADGSFVINGQKSWITSGPVARYIVLFAMTDPDKRSRGITAFMIDTHKPGFGRGKTEPKLGVRASATCEIEFQDYVAAAEDVIGNEGEGFKIAMSLLDSGRIGIASQAVGIARAAYEASLAYVKDRKSFGAPIGSFQMIQAKIADMKCKLDAAMLLTLRAAWTKSQGKRFSTEAAVAKLTASEAAMWIAHQAVQIHGGMGYSKEMPLERYFRDAKITEIYEGTSEIQRLVIARNETGVR
>NZ_CP014274.1|WP_062166149.1|315445_316375_+|metalloregulator-ArsR/SmtB-family-transcription-factor
MDLEDWSTRLKVFADATRVRLLTLLEQEELTVAELSAITTLAQPRVSTHLARLKEAGLVRDRRAGVSAYYRFDEAALDSAQRALWHALSSGSDDPLLRQDAERVPAVLAMRAADQNWADSVAGDMERHYSPGRTWEAMARSALPLLETGDVLDIASGDGVLAELLAPHAKRYVCIDTSARVVAAASERLRKLPNVEVLEGDMHKLPFADASFDLVVLMHALTYSSQPAKAVAECARVLRPQGRLMLCSLARHEHKAAVEAYGHVNLGFTGKELRKFVEKAGLEVSSLETVTREKRPPHFEVISLIAHQS
>NZ_CP014274.1|WP_062166150.1|316396_317476_+|5-methyltetrahydrofolate--homocysteine-methyltransferase
MQALPWLHPDRVRKLLDALAQRILIIDGAMGTMIQRHRLEEDDYRGTRFAEGFDSQHVHGAGCGHDLKGNNDLLLLTKPEVIAGIHTAYLEAGADLLETNTFNATSVSQADYHLEHLVYELNKAGAQVARQCCDAIEASNPAKPRFVIGVLGPTSRTASISPDVNDPGFRNTSFDELRATYREAIEGLIDGGADTLMVETIFDTLNAKAALFAIEEVFDTRGGRLPIMISGTITDASGRTLSGQTAEAFYASVSHGQPLSIGFNCALGATDMRPHVETLARISSGYVSAHPNAGLPNAFGEYDETPEEMATTLKEFAQSGLLNLVGGCCGTSPEHIRAIAEAVAGLPPRALPQAADKAA
>NZ_CP014274.1|WP_062166151.1|317486_318089_+|short-chain-dehydrogenase
MKKILLVGASGTLGSAVAQHLQQQHQLITASRSDPLHSVDLGSDDSVSALLQAVGPLDAIVATTGSVHFGPLSEMSPAQFAQGLHDKLLGQIRLALLGQQHLRDGGSITLTTGILTEQPIAQGASATSVNAAIEGFVRAAALELPRGLRINAVSPSVLSEALDAYGDFFPGFEPVSAARAALAYQRSIDGIANGQVFKVW
>NZ_CP014274.1|WP_062166152.1|318088_320923_+|methionine-synthase
MSNDTATHYTRLSGLEPLVITPDLLFINVGERTNVTGSAQFRKLVKEERYEEAVEVARQQVASGAQILDVNMDEGLIDSEKAMTRFLNLIMSEPDIARIPVMVDSSKWSVIEAGLKCLQGKSVVNSISLKEGEAAFLEHARLVRRYGAAAVVMAFDEVGQADTCERKVEICTRAYRILTEEVGFPPEDIIFDPNIFAVATGIEEHDNYAVDFIEATRIIKRTLPHCHVSGGVSNVSFSFRGNETVRQAIHSVFLYHAIKAGMDMGIVNAGAMPIYDQLDPELRERVEDVILNRRRDGTERLLEIAERYKGKKGEQKVEDLAWRERPVRDRLAHALVQGLDAWVEEDTEEARQQSSRPLDVIEGPLMDGMNVVGDLFGAGKMFLPQVVKSARVMKKAVAYLLPFIEEEKLRTGEVGKTNGKIIMATVKGDVHDIGKNIVGVVLACNNFEVVDLGVMVPAQKILDAARAENADIIGLSGLITPSLEEMSHVAKEMQRQGFDMPLMIGGATTSRAHTALKIDPFYDAPTVWVKDASRAVGVAQSLISRDLRESFVAANDADYADIRQRHRNRGDAKRLVSLEHARGQRFNCDWSQYTPPTPNQPGVHVFDDYPLQDLIPVIDWTPFFQAWELAGKYPAILTDEIVGPQASDLFADAQAMLKRIVDEKWLTARAVFGLWPANSSGDDVVLSVLPLAGDSAASSLLPPAGEGARRADEVKLSASSLVPSTLTPTPLPQGEGLDQQRTLHFLRQQVDKPAERPDFCLADFIAPADSGKQDWIGAFAVTAGIGIDAHVARYEADHDDYNAILLKALADRLAEAMAERLHQRVRTEFWGYASGEQLDNEALIAEKYSGIRPAPGYPACPEHSEKQALFELLGAEGIGMSLTESFAMLPTAAVSGYYFSHPQSQYFVVGRVSREQVNDYARRKGVDRAQVERWLASNLDYDPE
>NZ_CP014274.1|WP_062166153.1|320996_321680_+|hypothetical-protein
MPSRNAELIRKHAAPGRIGLCGTDDWIGKAIRKAQAPLTQDGHRSLWSHAFLFSEQRLDGHWWVLESDLDLRNRQLRLGAQENRADRYFDDEAFPNLAILDFGLDAAQTHKVQIAALDLLSGLSSYSLSELVGTLFAMHSTRLRRRSNLLSKEGALYCSAMVQHCYAAAGIDLMPGVHGKNVAPQDIYNSALGHTTHSLIRDLGISSLRRFTHSAKELLDTPVEDLF

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Crispr_ID: NZ_CP014274_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_2

334957-335101

Orphan

Consensus_repeat	Method
GTGGGCTCGGGCGATGTCGAGCTCAACGGCGTGC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP014274_2

>merge|NZ_CP014274|2|334957-335101|PILER-CR
GTGGGCTCGGGCGATGTCGAATTCAACAATATCGGCTCGCTGTACGTGTTGTCGGTGGGCTCGGGCGACGTCAAGGCCAATGGTGTGCGCGGCAATGCCCGCGTCGGCACCGTGGGCTCCGGCGATGTCGAGCTGCACGGCGTGC

>NZ_CP014274|2|1|334957-335101|PILER-CR
GTGGGCTCGGGCGATGTCGAATTCAACAATATCG	GCTCGCTGTACGTGTTGTCGGTGGGCT
CGGGCGACGTCAAGGCCAATGGTGTGCGCGGCAA	TGCCCGCGTCGGCACCGTGGGCT
CCGGCGATGTCGAGCTGCACGGCGTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062166163.1\|332602_333475_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP014274.1\|WP_062166159.1\|328629_328869_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|179141
NZ_CP014274.1\|WP_082746451.1\|331302_331908_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|223463
NZ_CP014274.1\|WP_062166165.1\|335331_335916_+\|DUF2884-family-protein	unknown	unknown	gnl\|CDD\|378556
NZ_CP014274.1\|WP_062166172.1\|346730_348155_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235779
NZ_CP014274.1\|WP_062166158.1\|327946_328621_-\|DUF2058-family-protein	unknown	unknown	gnl\|CDD\|225664
NZ_CP014274.1\|WP_062166168.1\|339965_341441_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225406
NZ_CP014274.1\|WP_062166173.1\|348280_348874_+\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|129813
NZ_CP014274.1\|WP_062166167.1\|338189_339572_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NZ_CP014274.1\|WP_062171312.1\|336576_337986_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_CP014274.1\|WP_082746450.1\|325820_327899_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP014274.1\|WP_062166162.1\|332243_332606_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NZ_CP014274.1\|WP_062166160.1\|328861_330211_-\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223936
NZ_CP014274.1\|WP_062166171.1\|345392_346604_+\|dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
NZ_CP014274.1\|WP_062166166.1\|335973_336402_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062166169.1\|341437_342343_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225064
NZ_CP014274.1\|WP_057628540.1\|330236_331217_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|223619
NZ_CP014274.1\|WP_062166164.1\|333471_334455_+\|ABC-transporter-permease	unknown	unknown	unknown
NZ_CP014274.1\|WP_062166170.1\|342518_345350_+\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499
NZ_CP014274.1\|WP_156455719.1\|331997_332240_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062166163.1\|332602_333475_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.66573e-64
NZ_CP014274.1\|WP_062166159.1\|328629_328869_-\|hypothetical-protein	gnl\|CDD\|179141	PRK00846, PRK00846, hypothetical protein; Provisional.	5.14854e-33
NZ_CP014274.1\|WP_082746451.1\|331302_331908_-\|glutathione-peroxidase	gnl\|CDD\|223463	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones].	2.43591e-80
NZ_CP014274.1\|WP_062166165.1\|335331_335916_+\|DUF2884-family-protein	gnl\|CDD\|378556	pfam11101, DUF2884, Protein of unknown function (DUF2884). Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.	1.47064e-06
NZ_CP014274.1\|WP_062166172.1\|346730_348155_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235779	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.	0
NZ_CP014274.1\|WP_062166158.1\|327946_328621_-\|DUF2058-family-protein	gnl\|CDD\|225664	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown].	8.18518e-45
NZ_CP014274.1\|WP_062166168.1\|339965_341441_+\|cupin-domain-containing-protein	gnl\|CDD\|225406	COG2850, COG2850, Uncharacterized conserved protein [Function unknown].	5.36688e-129
NZ_CP014274.1\|WP_062166173.1\|348280_348874_+\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|129813	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions. [Hypothetical proteins, Conserved].	5.77097e-58
NZ_CP014274.1\|WP_062166167.1\|338189_339572_+\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_CP014274.1\|WP_062171312.1\|336576_337986_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP014274.1\|WP_082746450.1\|325820_327899_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.71945e-62
NZ_CP014274.1\|WP_062166162.1\|332243_332606_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	1.48462e-29
NZ_CP014274.1\|WP_062166160.1\|328861_330211_-\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	gnl\|CDD\|223936	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane].	0
NZ_CP014274.1\|WP_062166171.1\|345392_346604_+\|dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
NZ_CP014274.1\|WP_062166169.1\|341437_342343_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	2.04896e-24
NZ_CP014274.1\|WP_057628540.1\|330236_331217_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	2.19271e-67
NZ_CP014274.1\|WP_062166170.1\|342518_345350_+\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0

>NZ_CP014274.1|WP_062166164.1|333471_334455_+|ABC-transporter-permease
MNATHHNITPLGKFKWLLKREYWENRGGFVWAQVITGGIAILFAIIGALIGAFAARNSDGINEIGDVSEYLKVMGAFGDGLLLAGIFLASLILAFVVFFYALGSLYDDRRDRSVLFWKSLPVSDTQTVLSKALWALVLAPLIAMAIGLIVGLVLWVVAMIGAAAAGATSPWAIATHSHPFRILGLVLSTLPVSLLWALPTVGWLMFCSALVRSKPFLWAVLLPLMACTMISILGAMPGVKLPLGLIWYTVAYRGLLSVFPSSWLPRGLTDTNIGNDDIQSPADLVQWLLQHHSLSKVLADPDIWIGAVIGIALIVGAVYLRRRRDDI
>NZ_CP014274.1|WP_062166163.1|332602_333475_+|ABC-transporter-ATP-binding-protein
MNAAVEAVVSAKGLRKAYKQKPALDNTSFSIEPGRIVGLIGPNGAGKTTALKAVLGLTSFDGELKVLGMDPRSQRDELMNDVCFIADVAVLPRWLRVKEAIDFVAGVHPRFDRARCERFLANTKLSPKQRVREMSKGMVVQLHLALVMAIDAKVLVLDEPTLGLDIMYRKEFYQRLLEDYFDEQKTIIITTHQVEEVEHILTDVLFIRDGRIVLSSDMESLADRYTELLTSADTVHAARALAPIDERALPFGKTVLLFDGADRNQLAGMGEIRTPGLADLFVATMKGTYA
>NZ_CP014274.1|WP_062166162.1|332243_332606_+|GntR-family-transcriptional-regulator
MSDIQWSDGAPIYRQLKDRVIAMMLDGILKPGDALPSVRQVAAEYQLNPITVSRAYQELADENLVEKRRGLGMFMTEEAAQKLRGNERDRFLNDEWPAVLERIQRLGLTMKDLLPPGTTL
>NZ_CP014274.1|WP_156455719.1|331997_332240_+|hypothetical-protein
MNTKHGRHALHALMVTGTLLLLGCSTSLGNGLAVASDYAAQVGGDGQDADDTPKAKRPARRMRTSLSMPYFSFAQLNSRS
>NZ_CP014274.1|WP_082746451.1|331302_331908_-|glutathione-peroxidase
MPSQTACRTQETLVNIRNVLISIAFIASAGGALDAVAGPLLDRSYRSLAGKEEVNLNRAYGGKVLLVVNTASKCGFTPQYEGLEALQQELAPRGFAVLGFPSNDFRGQEPGTEAQIQEFCTLTYGVKFPMFEKVHVVGPEATPLYQDLTRLSGVAPGWNFHKYLISRDGRVLAQFPSKVKPDDPELRAAIDRALAAAAPQR
>NZ_CP014274.1|WP_057628540.1|330236_331217_-|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MKMGKRGAVASLLILAMAAPGVVFSQQPAAAAATKEKSVLTSDREKIGYAIGIDVASSFEPIASEVDVAALRRGVENAFAGGQPLLSQEEAQKTDQALRTLMMVRSGQQVPGMAPGSQPPSVDREKVGLMLGSFAVGPSLARIQKDIDLDSVFQAVTTVFSKGTPLMNHEQAQAVLQAFSSTKEAEMKAEAGKAAQTNREEGNAFLAKNKTVPGVVTTPSGLQYQVIRAGSGERPVASSRVRVNYEGKLLNGEVFDSSYTRGQPVDFGLDQVIKGWTEGVALMPVGSKYRFWIPGELAYGEAGTQGGPIGPNATLTFDVELLGIMP
>NZ_CP014274.1|WP_062166160.1|328861_330211_-|UDP-glucose/GDP-mannose-dehydrogenase-family-protein
MRVAIFGTGYVGLVTGTCLAEVGHDVVCVDIDQSKVDGLERGIIPIYEPGLEPMVKANHASGRLAFTTDAAQAIAHGEVIFIAVGTPPDEDGSADLQYVLAVARTIGRHLARPTVVVNKSTVPVGTADKVRTAIAEELAARGQEIAFDVVSNPEFLKEGDAVADCMRPDRIVIGASSAHAVTVLRRLYAPFNRNRDRVVEMDVRSAELTKYAANAMLATKISFMNEIANIAERVGADIERVRQGIGSDPRIGWHFIYPGAGYGGSCFPKDVQALARTAAQHGHTPQLLNAVEAVNAAQKGHLFELIQRHYDRGEDEGVRGKTFAVWGLAFKPNTDDMREAPSRRVLAQLWEAGAKVQVFDPEAMAEARRIFGEREDLVFCDSAFAALHDADALVVITEWKQFRSPDFARMREALGDAVVFDGRNLYDPVEIEAAGLAYYGIGRGRSVHA
>NZ_CP014274.1|WP_062166159.1|328629_328869_-|hypothetical-protein
MHESPSEQREQALEARLVELEMRVSFQEQALAEMSEALADARMQGSRNADLLRHLLDDLGKVRTALYADAADEPPPPHY
>NZ_CP014274.1|WP_062166158.1|327946_328621_-|DUF2058-family-protein
MSDNIRDQLLGLGFKAAPKPERKPEARRDGRPQGTPGQGRPQAGSNKPAHAGSNKPGHAGKPAHPGRPSQGRPAQGPRKPRSQEDIDLAKAYAIRAQKEKDERMEAERLKQEEARLRREARAKLDELIKDKGLNDPNADIARHFPYGGKIKRIYVNAEQLKALNAGELGVLQQNGRYLLVTAQLLAEAEQVFAQAVALKVDPNAPADADPYADPQYQVPDDLVW
>NZ_CP014274.1|WP_082746450.1|325820_327899_-|acyltransferase
MKGNAMQGHLKQEGYFPHIDGLRAVAVLAVIFYHLNPNWLPGGFTGVDVFFVISGFVVSASVARSSRLEGWKGVLGFYARRMRRIMPALLVCLLATGLLSTFFIPESWLSETSGKTGRMAFVGLSNWVLAGTGNDYFSPRSEFNPYTHTWSLGVEEQFYLLFPLLFLGWEKGGKGRGLSMLLFALATAGSLAFAISRALQGGYEIQSFYQTTTRFWQLGVGVLLFQLLSMRGRLNAADGQPGVWHSLLLGACAAVLGYGLWAARPGHSPWIDGLWPVLGTLGLLALLQRSASGWIGSCLSLRSMVVVGRMSYSLYLWHWPVFVLFRWTVGLGSLLTGTLALLCTALLAWASWRCVEQPARFGRRWRGSDLRLVAGGALVLLLGMGLQKQVERAAKYVSLSTVSRHPLDWYPYSKGLKKEFPDCELVFSRLPVAGGQVQQFERGQCADGKGTTQRLFVAGDSHALAYGEMLRRLVLLDGGQARLYASAGCAFIDLQGRRQADSACDAYVRNTLADVTAHAQAGDVLLLPGLRVPRLVEQYSLFDREQAFFRVNSDASVAQRKADVEAAIAELKPLAERGVRIVLEAPKPVLGAPPFRCSDAFNRHNPICVHGMTVSREQMEALRAPALSSLQQVAQALPGASVWDPLPVLCPGPECLPDDGGKPLFFDGDHLSGHGNRMLLPSFRAHQTTLSR
>NZ_CP014274.1|WP_062166165.1|335331_335916_+|DUF2884-family-protein
MKILKAPLLALALVLPLTACGEKQAASTPSAESTIGAKVREATDQARKEMAAGNVSIGHDGANVELTPSGDLLINGTSIPLNDSQRAITLRYRAQMLSIAEAGIDIGVQGANLGAKAAGEAIKGIFSGNSEKIEERINAEADKIKASATKLCDQLPALMVTQQQLAEAVPAFKPYAKMDQGDIDDCRNGNSQSF
>NZ_CP014274.1|WP_062166166.1|335973_336402_+|hypothetical-protein
MNKLLLLILVAVATLATGCDREKYAEHRSERSKPKTEVTLERIAIRRAPYPNLDILPDGRLRVDDIVIPLNAEQQALLQTSYVKLQILRQNTLVDADPALAQERSLPLQIPEGQSPFPPDLAKQIPEFEKYGEALANLRALR
>NZ_CP014274.1|WP_062171312.1|336576_337986_-|class-II-fumarate-hydratase
MSKVSNSGFRTEHDSMGELQVPAEALWGAQTQRAVENFPVSGQRMPRAFIRALGLIKGAAAEVNTGLGLLPKGVGKAIQSAATEVAIGAHDSQFPIDVYQTGSGTSSNMNANEVIATLANNGGKAGKTAVHPNDHVNLGQSSNDVIPTAIRVSAQLEVVESLLPALKHLRKTIDKRARTLGKVVKTGRTHLMDAMPLTFAQEFGAWSAQLASAEGRIEDALKRLRRLPLGGTAIGTGINADPRFGGKVARALSATTGVKFESAANKFEGLAAQDDAVELSGQLNALAVALIKIANDLRWMNSGPLAGLGELELPALQPGSSIMPGKVNPVIPEATVMVAAQVIGHHTAITVAGQTGNFQLNVALPLIAANLLDSIQLLSNVMNLLADKVFVGLLVKQERVREALARNPILVTALNPIIGYEKAAAIAKRAYKEQRPVLDVALEDSGLSEAELKRLLDPAALTLGGIHDH
>NZ_CP014274.1|WP_062166167.1|338189_339572_+|adenylosuccinate-lyase
MTDTSRQEAALLALSPLDGRYAGKVDALRPIFSEYGLIKARVKVEIEWLLALGAEPGITELADFSAAGKAKLRALADDFSVGNAARVKEIERTTNHDVKAVEYFIKEQLKDDAELAPALEFVHFACTSEDINNLSYGLMLAEAREKVILPGYAGIAATLRTLAHAQAAQPMLSRTHGQTASPTTLGKELANVVARLERQIRQIGAVELTGKINGAVGNYNAHVVSYPDVDWPAFAERFVTSLGLVFNPYTTQIEPHDNVAEIGDAARRANTILIDLARDIWGYISLGYFKQKLKEGEVGSSTMPHKVNPIDFENAEGNFGIGNALFEHFSAKLPISRWQRDLTDSTVLRAVGTAFGHSQVGLESLAKGLGKLTVNPERLDADLDAAWEVLAEAVQTVMRRHGLPNPYEQLKALTRGHGITADSMRAFIETLELPADAKQRLRELTPGGYAGLAAELAKAI
>NZ_CP014274.1|WP_062166168.1|339965_341441_+|cupin-domain-containing-protein
MAARKQKTYPIEVQARAGLPLGMAPATFLRDYWQKRPLLIRAAFPDFETPVLPEDLAGLACEEGALARIVSHDRATDGWELRTGPFQEEDFPGMPDHDWTLLVQDVDKWDPEVRALTSYFNFLPRWRMDDVMISFAATGGSVGAHVDQYDVFLLQAHGQRRWQIDASESTKGKRPSLEFRPDVELKLLKKFKATHDWVLGPGDMLYLPPNVPHNGVAVNPCLTFSFGMRAPSSAELISDYLDDLVADADESIRFQDPDLKLPEDPNEIDAAAMKRVVAALNALRMNDPDRLGNWFGRFITTYRAAGDILPSQAPPSPEEVTAELENGGVLERHPWARLAWRRATRGASLYCSGLAFQLSIKDAQTLAGAEQIDIALFNKLGNKGRDALMELITGGHYQLLDVETIAAMLAEQDALEVLEDAEQDFDDEEFDDEADAPEVEIEVIEYSEAGDGEPSSASIETVLVSEEGVEVVVICDDGDEEDEDDAETPSA
>NZ_CP014274.1|WP_062166169.1|341437_342343_+|GNAT-family-N-acetyltransferase
MSQTAIFHVEIADYAVQQALLHGVRHTVFVSEQNVPAELEIDALDPLSDHALALDADGQAIGAARLTPDQRIGRMAVLSAWRGKGVGQALLNALLATARTRGWGEVSLHAQLHARDFYACNGFLPEGAEFEEAGIGHQSMRRRLDGAMRVQDPAQARAATAAVIHAARRRLCLQLRGNDTLLAQPLVVDALRRFATARHDKQAQLLLHEADLPALPAAFLALVQRLPSVFQLREPVDPADCQVASAAISNDRGDCYFRPIGARIEGELWLDAPARAQQQEAQFKRIWERSRVCNGLRVLGV
>NZ_CP014274.1|WP_062166170.1|342518_345350_+|2-oxoglutarate-dehydrogenase-E1-component
MDNLLKQFAQSSQLAGGNASYVEDLYEQYLVSPDSVDPKWKSYFDGFKGREAGDVPHSAAIAHITEAARNAGKVGGNAGSGDERERNVGRLITAYRSRGHLGANLDPLGLTPPVNPPDLGLPFHHLSDADLNDEFSTGGVGGQPRMKLRDLVARLKATYTGSIGAEFMYIAEVEQRQWLYQRLETAGGNYNLDADTKRRTLERLTAAEGLERYLHTKYVGQKRFSLEGGDSLIPMMDTIIRDAGKEGVKDVIIGMAHRGRLNVLVNTLGKNPRKLFDEFEGKFEHDDRAVAGDVKYHMGFSADVASDGGPVHLALAFNPSHLEIADPVVVGSVRSRQERRNDTARKQVMPVLIHGDAAFAGQGVVMELFQMSQARGFTVGGTVHIVINNQVGFTTSNRDDSRSTLYCTDIAKMVAAPVLHVNGDDPEAVVFAAKLAYDFRQQFNKDVVIDLVCYRRWGHNEADEPAITQPLMYQVIRKHKTTRELYAEQLEAAGVIAAGAGKEMVDAYRNKLDSGEVTTELAKVEKTPATSKMYVDWSKYLSGKLSDPVSTKVDMGKLTQLATLINTIPEGVEVHSRVAKVYDDRRKMAAGEILGDWGFAENLAYATLLDEGNALRLVGQDVGRGTFTHRHAILHDQKTDNYYLPLRQLVESPEQATIIDSLLSEEAVMAFEYGFSTTDPNTLCIWEGQFGDFANGAQVVIDQFIASGEAKWGRISGLTLLLPHGYEGQGPEHSSARLERFLQLCALENMLVCVPSTPAQAFHMLRRQMRMDTRKPLVVMSPKSLLRHKLAVSSMDEMANGEFQHLIGDAKADAKKVKRVVVCSGKVYYDLLEDVTKRGQDDVALVRVEQLYPFPRPALAAELKKYGKATDVVWCQEEPMNQGAWYQIKHHLQACVADGQALHYAGRPRSPSPAVGHMSDHLRELAQLLADALVNKIDDNYAE
>NZ_CP014274.1|WP_062166171.1|345392_346604_+|dihydrolipoyllysine-residue-succinyltransferase
MATEVKVPVLPESVSDATIATWHKKAGEAVKRDENLLDLETDKVVLEVPAPVDGVLKEIKFQEGDTVTSSQILAIIEEGAVAAAAPAAAAEAPKAAAPAPAAPAAAPAAAAAPAPAAKSAADSLPPGARFSAITEGVNPADVSGTGRHGAVTKEDIVNFARNGGVGKAGGARPEERVPMTRMRKRIAERLMQSKNSTAMLTTFNEVNLSKVSAARKELQEEFVKAHGIKLGFMSFFVKAAANALQRFPLVNASIDGDDIIYHGYSDISIAVSTEKGLVTPVLRNVERMSFADIEKAIADYAKKARDGKLSLEELQGGTFTVTNGGTFGSLMSTPIVNPPQSAILGMHAIKDRPIAENGQVVIAPMMYLAMSYDHRIIDGKDSVQFLVDIKNQLENPGRMLFGL
>NZ_CP014274.1|WP_062166172.1|346730_348155_+|dihydrolipoyl-dehydrogenase
MAEQFDVVVIGAGPAGYHAAIRAAQLGLKTACIDAALGKDGKPALGGTCLRVGCIPSKALLDSSRQYWNMGHIFDQHGISFNDAKIDVSKMVGRKDAIVKQFTGGIAQLFKANKVATYYGFGQLQAGNVVKVKQHDGSEVELKGTNVIIAAGSDSIELPFAKFDGNLIVDNVGALDFTEVPKRLAVIGAGVIGLELGSVWKRLGSEVVILEALPEFLAVADAEVAKVAAKEFKKQGLDIRLNAKVSKTEIKGNEVIVSFTDAEGDKTLTVDKLLVAVGRRAASKGLLAEGTGVQLNERGQIVVDDHCHTGVDGVWAVGDCVRGPMLAHKGFEEGVAVAELIAGLPGHVNFDTIPWVIYTEPELAWVGKTEAQLKAEGIPYKAGSFPFAANGRAVAMVEPAGFVKVLAHAETDRVLGMHLVGANVSELVHEGVLTMEFSGSSDDLARICHAHPSLSEAVHDAAMAVSKRAIHKAN
>NZ_CP014274.1|WP_062166173.1|348280_348874_+|TIGR00730-family-Rossman-fold-protein
MKSICVYCGSNPGAKPLYVERATELGKRIANEGLRLVYGGGRTGLMGAVADGVLAAGGEVTGVIPQHLVDMEVAHKGVTSLEIVGSMHERKSRMFDLSDAFVALPGGFGTAEEIFEMLTWRQLGIGHKPCAFLDIDGFYQPLINMIDTMVSERFLHPEQREDLWYGDDATQMLEWMRNYSPAQADKWFDEKKRNALR

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Crispr_ID: NZ_CP014274_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_3

783928-784004

Orphan

Consensus_repeat	Method
ACATGTAGTGCCGAGCCATGCTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014274_3

>merge|NZ_CP014274|3|783928-784004|CRISPRCasFinder
ACATGTAGTGCCGAGCCATGCTCGACAAAGGCGTTACACGTGCCGCTGGTCCCACATGTAGTGCCGAGCCATGCTCG

>NZ_CP014274|3|2|783928-784004|CRISPRCasFinder
ACATGTAGTGCCGAGCCATGCTCG	ACAAAGGCGTTACACGTGCCGCTGGTCCC
ACATGTAGTGCCGAGCCATGCTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062166500.1\|789948_791931_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|236941
NZ_CP014274.1\|WP_062166497.1\|786117_787182_-\|sensor-domain-containing-diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP014274.1\|WP_062166503.1\|793954_794512_-\|DUF4019-domain-containing-protein	unknown	unknown	gnl\|CDD\|372517
NZ_CP014274.1\|WP_062166499.1\|788085_789762_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP014274.1\|WP_084743376.1\|775767_776367_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_082746687.1\|776588_777575_+\|NAD(P)H-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176180
NZ_CP014274.1\|WP_062166501.1\|792126_792390_+\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|379097
NZ_CP014274.1\|WP_062166488.1\|773704_775507_+\|DUF885-domain-containing-protein	unknown	unknown	gnl\|CDD\|377577
NZ_CP014274.1\|WP_062166502.1\|792632_793811_-\|5-demethoxyubiquinol-8-5-hydroxylase-UbiM	unknown	unknown	gnl\|CDD\|236385
NZ_CP014274.1\|WP_062166496.1\|784136_784964_+\|DUF72-domain-containing-protein	unknown	unknown	gnl\|CDD\|376655
NZ_CP014274.1\|WP_062166491.1\|777691_778273_+\|DUF1211-domain-containing-protein	unknown	unknown	gnl\|CDD\|226078
NZ_CP014274.1\|WP_062166494.1\|779783_781616_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP014274.1\|WP_062166505.1\|795910_797401_+\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200
NZ_CP014274.1\|WP_062166498.1\|787308_788031_-\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|236698
NZ_CP014274.1\|WP_062171381.1\|785010_785931_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP014274.1\|WP_062171379.1\|781826_783377_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP014274.1\|WP_065868030.1\|772251_772500_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062166487.1\|772593_773385_-\|DUF4349-domain-containing-protein	unknown	unknown	gnl\|CDD\|379526
NZ_CP014274.1\|WP_062166492.1\|778432_778888_+\|DUF1801-domain-containing-protein	unknown	unknown	gnl\|CDD\|378058
NZ_CP014274.1\|WP_156455748.1\|778952_779450_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062166500.1\|789948_791931_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|236941	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional.	0
NZ_CP014274.1\|WP_062166496.1\|784136_784964_+\|DUF72-domain-containing-protein	gnl\|CDD\|376655	pfam01904, DUF72, Protein of unknown function DUF72. The function of this family is unknown.	3.22435e-62
NZ_CP014274.1\|WP_062166505.1\|795910_797401_+\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	4.89461e-57
NZ_CP014274.1\|WP_062166492.1\|778432_778888_+\|DUF1801-domain-containing-protein	gnl\|CDD\|378058	pfam08818, DUF1801, Domain of unknown function (DU1801). This large family of bacterial proteins is uncharacterized. They contain a presumed domain about 110 amino acids in length.	8.64931e-05
NZ_CP014274.1\|WP_062171379.1\|781826_783377_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	2.02653e-65
NZ_CP014274.1\|WP_082746687.1\|776588_777575_+\|NAD(P)H-quinone-oxidoreductase	gnl\|CDD\|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0
NZ_CP014274.1\|WP_062166501.1\|792126_792390_+\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|379097	pfam13275, S4_2, S4 domain. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4.	1.19242e-21
NZ_CP014274.1\|WP_062166488.1\|773704_775507_+\|DUF885-domain-containing-protein	gnl\|CDD\|377577	pfam05960, DUF885, Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.	1.76518e-116
NZ_CP014274.1\|WP_062166502.1\|792632_793811_-\|5-demethoxyubiquinol-8-5-hydroxylase-UbiM	gnl\|CDD\|236385	PRK09126, PRK09126, FAD-dependent hydroxylase.	0
NZ_CP014274.1\|WP_062171381.1\|785010_785931_+\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	2.49827e-08
NZ_CP014274.1\|WP_062166491.1\|777691_778273_+\|DUF1211-domain-containing-protein	gnl\|CDD\|226078	COG3548, COG3548, Predicted integral membrane protein [Function unknown].	4.004e-45
NZ_CP014274.1\|WP_062166494.1\|779783_781616_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	9.65226e-154
NZ_CP014274.1\|WP_062166499.1\|788085_789762_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	4.2976e-58
NZ_CP014274.1\|WP_062166503.1\|793954_794512_-\|DUF4019-domain-containing-protein	gnl\|CDD\|372517	pfam13211, DUF4019, Protein of unknown function (DUF4019). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 130 and 183 amino acids in length. There is a single completely conserved residue E that may be functionally important.	7.75194e-28
NZ_CP014274.1\|WP_062166487.1\|772593_773385_-\|DUF4349-domain-containing-protein	gnl\|CDD\|379526	pfam14257, DUF4349, Domain of unknown function (DUF4349). This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 282 and 353 amino acids in length. There is a single completely conserved residue D that may be functionally important.	4.81355e-22
NZ_CP014274.1\|WP_062166497.1\|786117_787182_-\|sensor-domain-containing-diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	4.07796e-54
NZ_CP014274.1\|WP_062166498.1\|787308_788031_-\|pseudouridine-synthase	gnl\|CDD\|236698	PRK10475, PRK10475, 23S rRNA pseudouridine(2604) synthase RluF.	2.22775e-99

>NZ_CP014274.1|WP_062171379.1|781826_783377_-|serine-hydrolase
MLAMGVMAPLAAAQEATPMELQQLDATVERVRQQFDVPGVAVAVVKDGKVILERGWGLRELGKPEPVQADTLFAIASNTKAFTATSLNLLAEDGKLKMDDRVVDHLPSFRMSDPYVTGEMRIRDLLSHRSGLSLGAGDLLFWPTTRYSNAEVVARLAQVPLKNGFRDRYAYDNILYAVAQQVIEKVSGLSYADFLQQRIFDKVGMRDTRYNADHLQPGDKAAVGHAKFDFKDLRPVPPLTWSNNAGAGGIYSSVHDLAKWMNVQLAEGKLADGTPLFSEKTQQQMWQMQIPQVVPKPSVPELAAARPNFAGYGEGWSLSDYRGQKLVWHTGGWPGQVSRLTLVPEQNLGVVVLTNQESGAAFNAITMSVLDAMLGAQGNDWVAAYAAGVAKAQGNADEAWDKHVAARDARSKPSLPLSSYAGAYRDAWYGDVFVEQQGGKLRLRFGATADLVGTMEHWQHDTFIVRWDNRSLNADAFVNFSLDPDGKVREVRMQPVSSLTDFSFDFQDLLLKPKAE
>NZ_CP014274.1|WP_062166494.1|779783_781616_-|ABC-transporter-ATP-binding-protein
MLRWFESLIPVFPPVDTRTPPRGVVRFYLHYLRPVWPVLLATLIAGLLLALVEVAMFDFLGRIVDMLGDGAGAGFFQRNASELLWMAGITLLARPLLVALHNLLVNQSIVPGLSNRSRWLMHNHVVRQSLSFFQNDFAGSVANRVMQTGTSLRESAVQMVDSLWYIVVYTGTALYLFAQVDWRLMLPLAIWMVAYVGIGVYFVPRMKHRAWIASDARSRAMGRIVDGYTNIATLKLFAHSGHEQRYVAEAIQELAEKHRAQTRITTGLEMVIAILNGFLIVGTCALALWLWQDNLISVGAITLATGLVIRIHNMSGWIMWTINGIFEDIGTVQDGMETIAQPLSVQDAADAKPLVVTAGAVDFQNVHFHYGKRGGVMAGLNLAVKPGEKIGLVGPSGAGKSTLVNVLLRLYDLESGRILIDGQDIAHVTQDSLRAQIGVVTQDTSLLHRSIRDNLLYGRPDASEEQLRAAVAKARAEGFIDSLVDGQGRQGYDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQDSLDELMGDKTVIAIAHRLSTIARMDRLVVMDQGRIVETGTHAELVAAGGLYARLWARQTGGFVAAEG
>NZ_CP014274.1|WP_156455748.1|778952_779450_+|hypothetical-protein
MSPWTWLFPRTPVVFSSPLPRDQAVQALRAATARGNLTATGTIAGSVNADKVLLYHRRTMRNSFKPHFRGRFVASAQGCELRGVFAPPLLVVVFLSFWVGFCLLWTVVSATQFGEQNSLQLAAAIPGLVMAGFGVGLLRLGQHLSADDPAILSRVIRQALQSPSA
>NZ_CP014274.1|WP_062166492.1|778432_778888_+|DUF1801-domain-containing-protein
MPDTKSKAKSTGFTAAEQAAMKERARELKAEAKTGKLKADGEAELLAKVAEMPAAEQQIARRLHAIVTATAPSLLPKTWYGMPAYARDGKVLVFFQGASKFGSRYSTLGFNDSAVLDDGPMWATAYALAELTPEVEKKITALIKKAMRTAG
>NZ_CP014274.1|WP_062166491.1|777691_778273_+|DUF1211-domain-containing-protein
MGKGRLEAFSDGVLAIIITIMVLEMRPPEGASLDALRPLLTTLLSYILSFVYVGIYWNNHHHLLQACQKVTGSVLWANLHLLFWLSLLPFATHWMDDYNTQPLPTALYGCVLLAAAIAYWILQRRIVAADGTNSRLQHALGSDWKGKLSPLLYISGIALSFVEVHLGQALYAITALLWLIPDRRIERELERRD
>NZ_CP014274.1|WP_082746687.1|776588_777575_+|NAD(P)H-quinone-oxidoreductase
MQLIQLSATGDANNLRLAHGPTPKPRSGEVLIRVAAAGINRPDLLQRRGLYPQPPGASETLGLEIAGTVVRTAAGIPWPRVGEQVCALLSGGGYAEYATAPATQCLPIPARLALLEASALPETFFTVWSNLFMAGNLGADESILIHGGSSGIGTTAIAIAHAFGARVIVTAGSELKCQACLRLGANHAINYHTQDFVQQVRNLQDGNGVDVVLDMIGGPYFARNLDVLNMRGRIIQIGLQQGSEVMLPLLTLMRKRASVTGSTLRPRSVGEKAVIAQQLRQQVWPLIESGKIRPPLIDKVFDLADAAQAHAWMERGEHIGKIVLQVAH
>NZ_CP014274.1|WP_084743376.1|775767_776367_+|hypothetical-protein
MAKLTNDLPMHADHLAYFKILLEGRADISWNAWFKRNEADLAARMPRADFLRLKFNKLDEAERLLRLAGIDPVISPLAKRERYYASLHDNVLDAQGRPLLSVRRGAYDGALGQALDGHLQQAATTLGGFLEKLQQQPRNTRPEILADLCFDGEMERDFGDCATGDLMLKAVAAFASDDDLLAPAMERAKALLADDSDTR
>NZ_CP014274.1|WP_062166488.1|773704_775507_+|DUF885-domain-containing-protein
MRKHLLAAALLASLAGCQSGEAPTAPSTSAEQAGQGQADAQFAELSKKALDTWMQLSPVSATQIGDHRYDSRLDDLSAAGQQKSLEASKALLAELDKLDVSKLGRENQVDAAILRNQLQSDIWSNETMQSWKWDPQVYNGLAGSAIYGLMAREFAPLPERLKSATARIEQIPQIFAAARANLDPARVPKIHAETVAKQNRGILSLVETFIVPNIGQLEAADQERLKTAIANLTKAVEEQQTWLDKTLVPNAKGEFRIGAEKYDQKLKFSLNSSLSRAEIGERARAELSRVRKDMYGIAQVVLKDKPGAPEMPANPTDDQQQKAIEAALELAYADKPARDKVVDDAKSALDQSTEFVRKHDLMTLPDAPVDIILMPEFQRGVAVAYCDSPGPLDKNLKTFYAVSPIPDDWNDKQVDSFLREYNSRMIHLLSIHEGTPGHYLEGWHSGKFPSTLRAVLRSGLFAEGWAVYTERMMQEQGYLDNDPLFHLVQLKFYLRTIANAILDQGVHVDNWSREQAMQLMTHDAFQQESEASGKWVRAQLTSAQLPTYFVGAQEHFDTRKAVQDKQGANFNLKAYHDQILSYGAPPVRFARQLMLEQPIE
>NZ_CP014274.1|WP_062166487.1|772593_773385_-|DUF4349-domain-containing-protein
MKQLHGRTLALALGALLALAGCAKHEMSAESAAVAADAVQSPEGAFLAYEHTVQLQLPGKDIAPRVKAVADACQSAKYGDCAVLNVSQQGGDTPSGLIKVRVAPKGVEPLIALASDKGEVTTRNTEAEDLAQQVADTQLMQDRLKAEHARLIEYQQRRDLAVADLLTISQRLSEIEAGLQQANRDAAQQHRRIDTQLVTINIESTNSQRNRSEIGQAFGDFGEIFTTSLAYVIRIAAGLLPVLLVGGVLAWLLRLWWRRRRKK
>NZ_CP014274.1|WP_065868030.1|772251_772500_+|hypothetical-protein
MFTIVVLWDAKNAEVTQWEEIPALITWKDRELSLRAGPRERVDADGNSSQVAVYLPDELNEEEFQELFAAHEKRIPELHLHG
>NZ_CP014274.1|WP_062166496.1|784136_784964_+|DUF72-domain-containing-protein
MNDLFASTAHAPGVHVGIGGWTYVPWRGGTFYPVGLVQRRELEFASQQLTSIEINGTYYGAQKPHIYAGWRDATPEGFVFSAKAPKRIVGTRKLAGTGGQIEDFIDGISHLGDRLGPLVWQFENGRTLDRDDLAAFLQLLPQQVNGRRQRHALEVRDPNCFDAELVALIRQQGIALVYTDSPEYPNGADLSGDFVYARLMRSRDEHASGYPAAELRQWTAHVHNWRAGKDVAELPHLAAPLAPAKPREVFLYFISAAKHRNPAAALALQALVDKN
>NZ_CP014274.1|WP_062171381.1|785010_785931_+|DMT-family-transporter
MPTNDHRKALLQIHFCVLLWGVTAILGKLITLPALPLVWWRMLLVVAMLALLPRVWRGLSSLNLRLALGYAGIGALVALHWLTFYGAVKLANASVAATCIALAPVFTAIIEPWIARRPFQLRELALGVVVLPGVALVVGGVPDGMRLGVAVGAASALLVALFGSFNKRMVGHADPLTVTAVELGAGTLTLTLLAPALPLLLPALASDLWVLPNLHDGLLLLALSGLCTLLPFALALVALKHLSAYTVQLVTNLEPVYAILLAMLFLSEQHELTPQFYLGVAIILGGVFLHPLLNRLRPAAASTGSI
>NZ_CP014274.1|WP_062166497.1|786117_787182_-|sensor-domain-containing-diguanylate-cyclase
MIKPALPVNEAERLAALQRYRVLDTAREQEFDDLVTIARTICGTPMGAVTLIDRDRQWFKSLQGLDGEQTPRDEAFCAHTILKPEELMVVADARQDQRFSANPLVLGDPHIRFYAGAPLLSSDGYALGSLCVFDSVPAQLGTPQAEALRALSRQVSRMMEMRLLRLDIDHLQSERDWYETHLIEYYQQLEQVNLELSEQTRTDPLTGLPNRRALAAALTEAIGRAGEVAPAVAIVDIDHFKMVNDIHGHGEGDLVLTELANVLKSQFSARGMAARYGGEEFVILMPDTPLQQAELQCEYLRAAVGLLPIGLPITISIGLAVHRIGESSDETLRRADAALYQAKALGRDRVVVAN
>NZ_CP014274.1|WP_062166498.1|787308_788031_-|pseudouridine-synthase
MTIRINKHIAETGFCSRREADRLLAARRVTVNGIVAGTGAVVGEGDEVKVDGQPLRARAVQKSTGRRHVYIVLNKPVGITCTTESAVKDNIVEFVGHEQRIFPIGRLDKDSEGLILMTSNGDIVNQILRAENGHQKEYLVAVNKPVTDEFLRGMARGVRIHNEMTLPCRTSRIAKYGFRIILEQGLNRQIRLMASEFGYRVTQLRRVRIDNVKIGALKPGQWRNLSEQELRGLLPQQQQW
>NZ_CP014274.1|WP_062166499.1|788085_789762_-|diguanylate-cyclase
MAGAGGAVAGRLRRGWVALVLLSMCFMVWPPVGAAQPLQVDHDYLIAGAPTAEQAPLRACSAEALARMRPAIEIPAPEGGWSGAPQGVGVFNVFAGEVMIFHGDRQVCGDMQDARTRDSRFRAGVGLVVVPKRGTVEPIRVAWESPLKPRWIPTVHLGAPSPLQQQDTLRLVVRTACVAIALALALSALMGFATTRGRDFLIYTLVCALLVVWQAVLSGLSGYPEPWLPVDGHAPVWMVSVSALSYAVMGGVLWRMCGGRWVLRGSRRWMQLLMIALALVALAAPFMTWPLLARIGEALDDLFTLICIASVGIAIVALRRGYFQALDGLVAVIPLLVMALADLMDSRLLVEFRVEAIQVSVTWFLMMSAYSLNRSLSQLRQQRDEMRALADTDTLTGLPNRRAGLRQLEHYMSQAKAAGQPLSIGFLDIDLFKQINDRYGHDGGDQVLVSVAGTLLAGVRSRSDVIRMGGEEFLILLPGIGADAARPRLEQLREKVTAQARGLKHEGLVVTASIGLAELQYRDNDVAALLRRADNAMYQAKRSGRDQVVDARDIQEVA
>NZ_CP014274.1|WP_062166500.1|789948_791931_-|DEAD/DEAH-box-helicase
MSQDTPAPLLFADLGLSEPVMKAVADVGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTGAFALPVLSNINLSATKPQVLVLAPTRELAIQVAEAFQTYSASMPGFRVLPVYGGQPYGQQLSALRRGVHVVVGTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPESRQVALFSATMPQQIRRIAQTYLRDPVEVTIQSKTTTSANIRQRYWWVAGMHKLDALTRILEVETFDAMIIFARTKAGTEELASKLQARGMAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIERATRQPIEEMQLPTVDAVNDHRVTKFMDRISQTLAAGDMDFYRDLLQRYEGEHNVPAIDIAAALAKLLQGDSPFLLTPPVRERREPSFERNDRNERPARDGGFHRRDERGGDRGDRPARFEPRFERAPRQDDGERAPRPPRGEGDFESRPRREMPPRSAPEFGMETYRIEVGHTHGVKPANIVGAIANEAGLESRFIGRIDIHDGHSVLDLPADMPTDVLQHLKKVWVSGQQLQMRKVEAGEEQGGAAPPFKPRFDKGDGKPGGRPGGPRGPRPGGPGGPGGSRPGGFKPRGPRNY
>NZ_CP014274.1|WP_062166501.1|792126_792390_+|RNA-binding-S4-domain-containing-protein
MQTIDFELDRDYVELKQLLKLTDLVTSGGEAKMIISEGQVSVDGVVELRKACKIRGGQQVQLGDIRINVLADPDPDGDHDDDEDEDE
>NZ_CP014274.1|WP_062166502.1|792632_793811_-|5-demethoxyubiquinol-8-5-hydroxylase-UbiM
MRKVDVVVVGAGPAGLSLARSLAGSGLSLALVEPQPLAALAEPAFDGREIALTHASRQIMRGMGLWQRIDPAHISPLRSAKVMNGSSPFALGFAAQGEGVDELGWLIPNHLIRRAAWEAVQGQAGLELVDGRSVTAIDAGDACSTVSLSDGSQLGARLVVAADSRFSATRRMMGIGAQMRDFGKSMLVCRMQCERPHEHAAWEWFGYERTLAMLPLPGNQASAVITMPQQQLQHLLALDDADFGRTVSGYFERRLGAMTPVGTRHAYPLVGVYAHRFVGQRYALIGDAAVGMHPVTAHGFNFGLQSQQRLARLLLEAVRGGGDIGADSLLARYQRGHRLATRPLYEVTNAIAGLYNDSRLPARLLRGAALRAAQGVVPFRKLIAGHLTQASA
>NZ_CP014274.1|WP_062166503.1|793954_794512_-|DUF4019-domain-containing-protein
MRSSCLLMALSLALPAAGAFAQAPAAAPAPAAAPARPAAPAATSAAARPAPALSAAQQAQVTKQDAEMTAAAQRVAQLVDNQQAASVWDGASAVARKAVTRDVFANNVNADRAKLGALVSRGKPSITRVQYPAGASVPEGIYLNVSFPTRFANNAQPVRELVSFRLDEDKVWRASGYSVRAASAN
>NZ_CP014274.1|WP_062166505.1|795910_797401_+|DNA-3-methyladenine-glycosylase-2-family-protein
MQTFLMPAHVQCEQARLARDARFDGLFYTAVRSTGIYCRPVCPAPPPKPENVSYYPSAAAASAAGYRPCLRCRPELSPDDANLLQDQTLHQALALLNEGILQEQPATALADAMGLSARQLQRLFVARLGATPAQLHTTRRLLLAKQLLTETALPVTQIALAAGFNSLRRFNSAFLEGCGMPPSALRKQHSAVAGGEPVLRLAYRPPLDFSLMLGFLRRRSLPGIECIDDDSYQRVVVANGVASLIRVTADPKRPELRLQLGTTDPRAIPAIVAKVRRVFDLDADLRTVHASLAQEPLLARGLVERPGLRIPGGWDGFEVAARAVLGQQVSVAAATTLARRLVDRFGEHLAGMPEGLDRQFPAPATLVEAPLESIGLPRTRAATLRAIARACAEDRLDFSRAQTLESFVQKATALPGIGPWTAHYMALRAMGLPDAFPAGDLVLQQVLGEGQRLSERETERRSQLWRPWRAYAVLHLWHLAVPTEKKNPKTATEASA

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Crispr_ID: NZ_CP014274_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_4

1039452-1039558

Orphan

Consensus_repeat	Method
CAGCCGAGCATGGCTCGGCTCTAC	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NZ_CP014274_4

>merge|NZ_CP014274|4|1039452-1039558|CRISPRCasFinder
CAGCCGAGCATGGCTCGGCTCTACCCAAAAACCGCAGTCCTGTAGTGCCGAGCCATGCTCGGCAGGGCATGCCCGGTAAGCTCCAGCCGAGCATGGCTCGGCTCTAC

>NZ_CP014274|4|3|1039452-1039558|CRISPRCasFinder
CAGCCGAGCATGGCTCGGCTCTAC	CCAAAAACCGCAGTCCTGTAGTGCCGAGCCATGCTCGGCAGGGCATGCCCGGTAAGCTC
CAGCCGAGCATGGCTCGGCTCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062166673.1\|1066748_1067420_-\|7-cyano-7-deazaguanine-synthase-QueC	unknown	unknown	gnl\|CDD\|284031
NZ_CP014274.1\|WP_082746496.1\|1064344_1064896_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|132044
NZ_CP014274.1\|WP_062166662.1\|1027297_1029400_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133029
NZ_CP014274.1\|WP_062166665.1\|1033836_1034358_+\|DUF4124-domain-containing-protein	unknown	unknown	gnl\|CDD\|379230
NZ_CP014274.1\|WP_062166663.1\|1031030_1033187_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_CP014274.1\|WP_062166670.1\|1060276_1061032_-\|SapC-family-protein	unknown	unknown	gnl\|CDD\|377801
NZ_CP014274.1\|WP_062166660.1\|1024232_1024766_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP014274.1\|WP_062166664.1\|1033248_1033764_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062166671.1\|1061570_1064324_-\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP014274.1\|WP_062166668.1\|1043119_1048024_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380183
NZ_CP014274.1\|WP_156455947.1\|1065341_1066373_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062171413.1\|1039651_1041454_+\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
NZ_CP014274.1\|WP_062166674.1\|1067498_1068188_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275145
NZ_CP014274.1\|WP_062166669.1\|1048092_1060170_-\|leukotoxin-LktA-family-filamentous-adhesin	unknown	unknown	gnl\|CDD\|380153
NZ_CP014274.1\|WP_062166659.1\|1021972_1024084_-\|ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
NZ_CP014274.1\|WP_082746494.1\|1038657_1039254_+\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP014274.1\|WP_082746495.1\|1041488_1043120_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP014274.1\|WP_062166666.1\|1034366_1038569_-\|ATP-dependent-RNA-helicase-HrpA	unknown	unknown	gnl\|CDD\|182986
NZ_CP014274.1\|WP_062171408.1\|1029469_1030900_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183140
NZ_CP014274.1\|WP_062166661.1\|1024774_1027201_-\|penicillin-binding-protein-1B	unknown	unknown	gnl\|CDD\|273952

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062166673.1\|1066748_1067420_-\|7-cyano-7-deazaguanine-synthase-QueC	gnl\|CDD\|284031	pfam06508, QueC, Queuosine biosynthesis protein QueC. This family of proteins participate in the biosynthesis of 7-carboxy-7-deazaguanine. They catalyze the conversion of 7-deaza-7-carboxyguanine to preQ0.	2.19012e-107
NZ_CP014274.1\|WP_082746496.1\|1064344_1064896_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|132044	TIGR02999, Sig-70_X6, RNA polymerase sigma factor, TIGR02999 family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found in a variety of species including Rhodopirellula baltica which encodes a paralogous group of five.	1.58077e-50
NZ_CP014274.1\|WP_062166662.1\|1027297_1029400_+\|glycosyltransferase	gnl\|CDD\|133029	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	1.00725e-44
NZ_CP014274.1\|WP_062166666.1\|1034366_1038569_-\|ATP-dependent-RNA-helicase-HrpA	gnl\|CDD\|182986	PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional.	0
NZ_CP014274.1\|WP_062166663.1\|1031030_1033187_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NZ_CP014274.1\|WP_062166670.1\|1060276_1061032_-\|SapC-family-protein	gnl\|CDD\|377801	pfam07277, SapC, SapC. This family contains a number of bacterial SapC proteins approximately 250 residues long. In Campylobacter fetus, SapC forms part of a paracrystalline surface layer (S-layer) that confers serum resistance.	4.19975e-84
NZ_CP014274.1\|WP_062166660.1\|1024232_1024766_-\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	0.00528481
NZ_CP014274.1\|WP_082746494.1\|1038657_1039254_+\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.44463e-65
NZ_CP014274.1\|WP_062166668.1\|1043119_1048024_-\|hypothetical-protein	gnl\|CDD\|380183	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I.	4.67243e-09
NZ_CP014274.1\|WP_062171413.1\|1039651_1041454_+\|DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP014274.1\|WP_062166674.1\|1067498_1068188_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275145	TIGR04349, Radical_SAM_domain_protein, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE, gammaproteobacterial type. Members of this radical SAM domain protein family appear to be a form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in preQ0 operons species that lack members of related protein family TIGR03365.	1.09449e-153
NZ_CP014274.1\|WP_062166669.1\|1048092_1060170_-\|leukotoxin-LktA-family-filamentous-adhesin	gnl\|CDD\|380153	NF012204, adhes_FxxPxG, leukotoxin LktA family filamentous adhesin. This model, related to TIGR01901, describes a conserved single-copy N-terminal domain found in repeat-rich, extremely long proteins such as the leukotoxin LktA of Fusobacterium necrophorum.	5.23414e-35
NZ_CP014274.1\|WP_062166659.1\|1021972_1024084_-\|ATP-dependent-DNA-helicase	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	5.82266e-168
NZ_CP014274.1\|WP_062166671.1\|1061570_1064324_-\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	2.77236e-60
NZ_CP014274.1\|WP_082746495.1\|1041488_1043120_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	4.77477e-76
NZ_CP014274.1\|WP_062166665.1\|1033836_1034358_+\|DUF4124-domain-containing-protein	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	1.2746e-05
NZ_CP014274.1\|WP_062171408.1\|1029469_1030900_-\|hypothetical-protein	gnl\|CDD\|183140	PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional.	0.00882051
NZ_CP014274.1\|WP_062166661.1\|1024774_1027201_-\|penicillin-binding-protein-1B	gnl\|CDD\|273952	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0

>NZ_CP014274.1|WP_082746494.1|1038657_1039254_+|DNA-starvation/stationary-phase-protection-protein
MAKAKNSSKPEAGKKKLAAAATGGTMEMGKKKLAAAAPSAPGVDIGIKDSDRKKVADGLSHFLADAYTLYLKTHNFHWNVTGSMFNSLHNMFMDQYTEQWNALDEIAERIRALGFNAPGSYREFAALTSIPEEPGLNDSADWREMVRQLVVGNEAVCRTARKVLDQADDADDAPSEDLLTQRLQIHEKYAWMLRSLLQ
>NZ_CP014274.1|WP_062166666.1|1034366_1038569_-|ATP-dependent-RNA-helicase-HrpA
MSTIEKDPPARLRAARAAIDGAMSRDRGRLLGLLSRWQGKPADAAAEQAFQQLLERSRAQRQQRAARPIAISTDDALPIAREAEQISGLIQAHQVVVIAGETGSGKTTQLPKLCLAAGRGEAGMIGCTQPRRIAARAVAARVAEELQTELGTVVGYQVRFTDKVGEDSRIKFMTDGILLAEIASDRWLSRYDTLIIDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFSRHFDNAPVVNVEGRTYPVEVRYRPLDEMGQSAQSAAAPARGKRVEADSESAMDPVSAIVAAVDEITRSDARGDVLIFLPGEREIRDTHQALERRKYRETEVLPLYARLSAKDQDRVFNPGPKRRVVLTTNVAETSLTVPRIRYVVDPGYARIKRYSPRQKLDRLHIEPVSQASANQRKGRCGRISEGVCYRLYSEADFLSRPEFTDPEIRRSSLSGVILRMLQLGLGSIDDFPFLEAPDERAVADGWQQLVELGAIDEERRLTAIGKQMARLPVDVKLARMLVAAQKSACLREMLVITSFLGIQDPRERPPEAREAADNAHALFADARSEFIGILRLWNAYRDAHEELTQSKLRDWCGRHFLGFLRMREWRELHRQLRLLCEELGWAMGEDESFGKALLSAPPTLPAGGDSEAKRKATRGEQHKAARLAREGKASVSDAVPAAAAAPAKNTRKPNPDPSVASIPDKVRIAAYQTLHRAVLAGLPTQVGHRTEKGDFQAPRQRRFHLFPGSALAKRPPPWVLSATLLDTQRVWGMTNASIEPDWVIAELPHLLARKHFDPHWSRAQGQVLASEQISLFGLVLAPKKSVHYGRINPGEAHDIFVRQALVTGEINTRAGFVADNLKLLEQAREEEAKLRRAGIVADEDWQARWYLDRVPSHIHSANLLDGWWKALPPEQRRSLHWSLTDLLPGEGSEQDRYPKYFPLGDARLAMHYRFEPGSEEDGVTLDVPLHLLNALDPARLSWLAPGFVADKASALIRSLPKAMRRNYVPAPDFGRAFAEAWPQPSADDIRGELARFLSKATGAVVAATDFDVEALEPHLRMNLRLFEVTAAPTGRGKDAASSEKGGMKLLAMSRDLDALRARFGERAGSAFAARAGAALAAEGLREFPATAIPEQVPGEAGVPAYPALVDTGDAAALRIFADRNEAALAHPQGVRRLLEIALADKLKQARKQLPVSPKTGLLYAAIESQERLRGDLVDAALNAVLAEGLEAIRTPDAFQQRCADAGKRLFGEAMERLKLAESILGLVGELKPQLESPLMGWARGNLDDMQAQLAGLVHAGFLRETPADALAQFPRYLKAMILRAERAKRDPPRDQARMLELKPFVDALQEARVQGLAERPQWAALRWDIEELRVSLFAQELGFRSGISAKKLAQRVAALRS
>NZ_CP014274.1|WP_062166665.1|1033836_1034358_+|DUF4124-domain-containing-protein
MRVFVLPLLLLLVPTSAAAQVYKCKGKSGETMYSEHPCDARAEPMKLRDQAAATPANSASNADGQPATATTAAPAAGGTAAEALEAERSCISTATASIYGSSNDRVGTLQQQMSTLNEQLAQATDAERSQALRQRMATFRQAISREHASAHTQMNTARRACIQQHRPEAAITR
>NZ_CP014274.1|WP_062166664.1|1033248_1033764_+|hypothetical-protein
MKLPRLAVLLAVTALSSSPFLDAHAQRVVQGDLQQQMSAAEFNAAGLNKLSPEELVTLNNWLQGKVAQAATIAVEQAREEGRQEVIVKNRGFSDFGSKDPIEATLEGEFRGFSKGRQYTLGNGQIWEQTDDTSVSGVRKQAPSVRITPGLMNVWYLQVDGLNTRAKVRRTK
>NZ_CP014274.1|WP_062166663.1|1031030_1033187_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MNSSPTPGLDALLQRASTRALSEPLRHALLACWQQPDMDASPHLPWPVLADTLDSLALLSADESVIVAALLFDLPGLRAHAAELPLGPSAAAVNGLLDGQEAADQVWALHAGREAGRNSEGLRRLLLAIIHDLRVVPILLSRQLACMRAADKLPAEQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFRFLEPETYRHIAREVDETRIARERYVEAVKKKLSAALAEQAIRGEVSGRPKHIYSIWRKMQKKQLAFEQLYDLRAVRVMVDDVGACYATLGVVHALWTPIPSEFDDYIARPKANDYRSLHTAVIGPEGRTIEVQIRTHEMHAQAELGVAAHWKYKEGGKGGEKAFDRKITWMRQLLEQAQDPGSPDDLAGALDAELIEDRVYALSPKGEVMDLPAGATPLDFAYHVHTMVGHRCRGAKINGRIVPLTYHLRSGDRVEILTGKEADPRRDWLLQSNGFLASGRSREKVRNWFHKLDRARNVQAGRELLDRELKRLGLQQSDLMVAARKFHADSVDDLYIQVALGDTGPSQVSRALLEAEKAATQPAAPALPRPTARRGSLGKSDFTVQGVGNLLVQLARCCQPVAGEPITGYLTRTRGVTVHRMDCAALARLSAAHPERVLPVEWGRTGSGYEVDVMVRAVDRRWLLKDITNLIAQEDAYVLEINSDNLRESGRVQLRLRLKVSDYGQLSTLLGKLDALPGVDDARRLG
>NZ_CP014274.1|WP_062171408.1|1029469_1030900_-|hypothetical-protein
MAIGVAALALVLALFRQPLANWLWPETKIQQLLDDGRSALRAGHLSAADGRGARELFEAAAALDPDRSDIRNALAQTAQAVLEQARRQLAAGDREAATRSLALARQLQAPSADIDPLAAQLQQAVGGDDGIEQLLQQAEAAQAQGRLDDAADAALPLYQRVLALQPDKMQALEGRDEVLSDLLTQATRAADRGDLAAAAALLQRVERYDAGHANLPAVKAVMNAALEQRRQQGERDFARGRLQRAADAFEQVLAAGEDPAARQGLQRIAHAQVQEALRLTADFQFELAERALKHARELAPDSPELSAAEQVLQRTRQARQAMEAPGTGAERERRLKVLLKQLDEAEARQEWLLPPGSSAYDRFKAAQALAPQDARVKRAAARILPAARRCLDDNLRGNRLRAARTCLDAWQALAPTDPALTAARRRLAQRWLAVGSERLGGGDTAFAQQALAQAQQIDPATPEIAGFNERVRNALR
>NZ_CP014274.1|WP_062166662.1|1027297_1029400_+|glycosyltransferase
MSISLADMRYAVNRIIGLARRGLASLRTRGWRATLHRVGVHTRRQPPAQRDPLYFPDNGPFVPFSVPRSEQPAASIVIPVYNHCGHTLACLRALAAHPPASSCEILVIDDGSSDSTREWMQQIDGLRYHLRASNGGFIAACNDGLRLSRGDHVVLLNNDTIPQPGWLDALLATFVQVPDAGLVGAQLLYPDGRLQESGGVVFADGSCWSYGRFESAEDPRYSALRDADYCSGAALAIPRLLFEELGGLDSRYAPAYYEDTDLAFKVREAGRRVLVQPASRVVHDEGTSNGTDTSSGVKAYQVRNQAVFASIWQHALAAQPAPGSVPSPALLHRHQRQILIIDECVPQPDRDSASLRQFNLIRLLLAEGAHVVFLPTRGEPASRATEALQAIGVEVWHAPFLDRVGSWLRDNGKRFAVVMLVRYHVANECLPLLKQFAPQARTVFDTVDLHYLRERRGAELARDQRLLRSAERTRASELAVMAATDVTLLVSAAEKEQLATDAPQVRVELLSNLHEIAGAGAPWAQRHDLVFVGGFRHPPNLDAMTWFIGDVFPLIHAQRPDIRFHCIGADVPDSIHTLAATRPGVQVHGYVPDVVPYMTGMRVAVAPLRFGAGVKGKVNLSMAHGQPVVATTCGVEGMHLQHGRDVLVADGAQAFADAVLRLYDDAELWQRLSDNGLANIATHFSMEAARQTVQRVFFTT
>NZ_CP014274.1|WP_062166661.1|1024774_1027201_-|penicillin-binding-protein-1B
MPRRHDSDELDDDTDGNSPVWRSRLITWGLAAAALGLGFMIPYTLYLNSQVSQRFGELRWQIPTRVYARPLVLSPGTAMNANTLKTELAASGYRDDGAGSSPGTYRVQGGSFTISSRGYVDVDGNVAPRKVDVVVSGGQVASLREAGSRKALKAARLDPARIATLYGQKQEERRLVRVREVPELLVTGLQAVEDKDFARHHGIDLSGIARAVWVTVRSGGETRQGASTLTQQLARSGLLGIGKEQTITRKFNEVLYALIMEARYDKATILEAYLNQVYLGQRGKQAIHGVSSGAEFWFGRDLNSLSSEQIALLIGLVKGPSYYDPRRNPENALDRRNFVLGKLLENKLIDEAEYQRAIKAPLGVSKNAGIAAANRFPAYVDLVRRQLGNDYPENVLQGAGLNVFTGMSPSAQAYAEGAVAHTIKALENKRRPELQTGLVVTDVHNGDVLAVVGSRDVSEPGFNRAIEAQRQVGSLLKPFVYLLALAQPDRFSLASWVDDSPVTVKLSRGRNWTPGNADNRSHGTVRLIDALARSYNQATVRVGMQVGPERLTQLMNVLAGLKAESNPAVILGSTDQSPYGMAQLYQFLASGGEIQPLHAVRGVVDAQGKLLKRYDKSPAPAQEGDSIAANLISVGLQQVVSSGTASGLNADGLSRLQAAGKTGTSNDGRDSWYAGYTGDHLAVIWMGNDQNEQTGLFGASGAMRVWSGIFRNLPSKALHVNNKGLDWQYVEAAGSNATDESCPGARRFPFVVGYAPPYVPCALPPEVPLEDAAEGAQERSGGGWRGWLGLDRKEPEPAAAPAAQTPAR
>NZ_CP014274.1|WP_062166660.1|1024232_1024766_-|hypothetical-protein
MKTTYLIRSALVAAAAVLSLAGCVSAPPPAPRAAVDTTTPAQRLAAVDAIAGADDTELSVQPLRDAQVDDLRQTAIAQRKAGDLAAAAEALNQALLLVTDDPGILQERADIALLQADWVRAETLAKKALDLGSRTGPLCRRHWATIEQSRLARAETQNAASAHAQIEGCTVPGIKRF
>NZ_CP014274.1|WP_062166659.1|1021972_1024084_-|ATP-dependent-DNA-helicase
MSSLVTASCEALSEGGALARQLDAFVPRPAQLRLTGAIAETFQQRDVLLAEAGTGTGKTYAYLVPALLSGLKTIVSTGTRALQDQLYHRDLPRVRAALGIGHRAALLKGRANYLCRYRLDQARGEPRFTSTEQVAQFQRILAWSGRTQYGDMAELDGLADDSPLLPMVTSTVDNCLGTDCSFWSDCFVVQARQRAQEADLVVVNHHLLLADLALKQEGFGEILPGAQAFVIDEAHQLPELAANFFGEGFGMRPWQELARDCLAECRSVAGAQATLQQPVATLELALRALREAMEKLPQRGTRWRALAVPAVAEGFDAVAAALAQLRDALALVCEASPGLDACHARALEGVSRLSRWLDDGDAAAVDAWDIDDAPAASDDAAAEPSSTAGDSLFPADDGNDVLWYELTPRGFRCQRTPMDVSGPLREHRLRSMAAWVFTSATLTVDGGFEHLAKRLGLDDPDTLVQPSPFDWQQQALCYLPQQLPDPAARGYGAALIATLRPVLEASQGRAFLLFASHRALREAAEALSDGPWPLFVQGEAPRASLLQRFRESGNGVLLGAASFREGVDVVGDALSVVVIDKLPFAAPDDPVFEARLDAIRRQGGNPFRDEQLPQAVIALKQGVGRLIRSETDRGVLVLCDPRLLSRSYGRVFLDSLPPFRRTRALADVQAFFARQWAPEHGPPPAAEEPSADADTAAPPFSLS
>NZ_CP014274.1|WP_062171413.1|1039651_1041454_+|DNA-helicase-RecQ
MPQSPAQQLLSSVFGYDSFRGDQQAIVEHVASGNDALVLMPTGGGKSLCYQIPALLRDGCGIVISPLIALMQDQVEALHQVGVRAEFLNSTLDAETAARVERELLAGELQLLYVAPERLLTGRFLSLLSRAHIGLFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPQVPRIALTATADPPTQREIAERLDLTTARHFVSSFDRPNIRYTVVQKDNAKRQLLGFLRNHRDEAGIVYCMSRRKVEETAQFLCDEGMQALPYHAGMPAEVRAANQRRFLREDGIVMCATIAFGMGIDKPDVRFVAHTDLPKSMEGYYQETGRAGRDGEAAEAWLCYGLGDVVLLKQMIEQSEAGEERKQLERAKLDHLLGYCESMQCRRQVLLAGFGETYPKPCGNCDNCLTPPAAWDATIPAQKALSCVYRSGQRFGVGHLIDILRGSDNERIRQLGHEKLSTYAIGNDLDARAWRGVFRQLVAASLLEVDPESHGGLRLTDASRDVLTGRRQMMMRRDATPTRERERGGPRTGLPVQAGDLGLFQALRGLRAELAREQNVPAFVIFHDSTLRNIAEQRPTSVEALGKVGGIGGSKLARYGQRLVEIVREQG
>NZ_CP014274.1|WP_082746495.1|1041488_1043120_-|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MDYRGMKMYRGLLLLGSALLPCMAQAQSTANEGGQTTTQRIDGYYEQRQPLQPQRPLTDPLEQQKAEDKPGNNADGDLHFTLKEVGFSPSELLAREALDAIAAPYVGRQVSMAELEKLVAEVNALYAAKGISTAKAMLKGQAIENGVVHISLIEGRLGTLTVAGEGRVPERFVQRRVHQPEGEVVQTDRLRDELVYLNRTSDLQVRALLRPGAAVGTTDIVLMTEFPDRHNWGVFVDNSGVESTGRERYGVQGQFWGLAGINDLLAGSVAYSEGGLEGRIAYSGIVNTRNGRVGVNVSRNQINIIDGAYRDLDITGESTSYGLDYSQPWIANQKWLLSTVASVSRGDSTSEIADVQVSEIKSTNLSVGVSAGYRNNGYDWTIYQGVSRVRTDETLKNGRNFTVANGNTSWTQRIGGSGFLYRAQLGWQFTSGEFLPSSNLFQVGGIGSVRGYVRGALSGVKGYFGSVELHRPYRQAHDVYVFFDHGEVRGDFPSSASISSVGLGLNGQVFKRYSYSLDLGHPLDKVLKDQDSVRADFRISARW
>NZ_CP014274.1|WP_062166668.1|1043119_1048024_-|hypothetical-protein
MDVSVVSDLYLNGTINNKAGTTTLSSSQGSIIQGNDRATLYAQNLVLNAKNGIGAIDGKAVEAALSNGGSVKATTNGGDIALNVHSDADVRLIAGNAQSGYGDVSLIASGNINGIAGDAVSIIGSNVNLTSTTGSIGKAGAAGALVIAAHESNGANNQVRGGNVYAKARDNVSLVDVDGDFWVGGVTATNGDVYLEARNGSLLDGAQRDTSKGLSDSQIEDIRKRLKLDGSGVTDTVATYERQVESLYAEYLNLYKQGGIVGAAFVPNAALLAAYRARAELAAGGAQTDAQVTAFVADLYQQMDATFGAVYGANWAAGADFTAPNGNFQFTLDTNSNIYKALADRAHWDEGQLQFAINASALEPAKSTGNNNAAPTISGANVTLRARDSLGKLADSVDVNYARVYAGNLDGKEALALAMATSPGDVQLIGRNGQVITIDQLKAMSEAELQAGPVDFIRIKQTAPLYVKASGTLTAKAGGSAYLQSTGDLTVAALDVTGNAALGVAGNLVGATPDTVLNVGGNLKLEADGSIGSNIGSVNESLLGLKLGGTLSANAGGALGIRQHGGNLVFDSLYSGDRMRLDVRDGSLLAASSSVIGLRSAAGGVQLTARDDIRAVDGGALSLQLDNGRLDGQAGGDILISSPKTALNIGTLQSGRNMQIGAAANLVALALRAGGSLRADAGGVLYNGVSGNLQIDDVQARDDITLAAAGDMTVGAAQSSQGNALLVATGDMDLDTLQAKLITMSAGGQLQLQAGGLVKGDGVTANIGSLKMDDGARMQAGSQLDVTTAGDMQLGQLQVTGAGSAGAMNLAAGGRIVGNGDGQVNLLSVPATQVNINAQTGIGQNGERLSIAGGVLNGGTRGGDALLDLIGSARIGVLAADAGSLDITGSADISFDSLKAGNNLHVVAGALQGGDLQAGQQILAGSGGAINLRDAVAGSSMQLAASGALAARQLQAGTGMALSSGNTLDVQQLTAGGDLAADAVGTLSIAQADVTGNADVDGQTDVVLGTANVGQALTANAATTLTATRLNAGGNARLSSGGNSTVGTFDGKQDLSITAGGDLALTTGTVDGDATLSSAGATSINSLSVQGTLDASSVGAMMARTLASGGNAALSSGNTLDVQQLTVGGDLAADAVGTLSIAQADVTGNADVDGQADVVLGTANVGQALTANAATDLTATSLNAGGNARLSSGGNSTVGTFDGRHDLSVMAGADISVTKAVTGRAMYLDAGQSIQVGTAQIGTDGVWKAGGDISADTVTTGCGFDADAGGVISLGSLQAGCGIALASNGTLAFDQLQAGDDISLVSRAGSVLGGQVDAGGSLRVAAAGDIAVNAAEAGRNITASSGGTQQWGRYAAGGDARLQSQGDVAVGSGVSGGAQSIISGGSIRFDRVAAGSTVRMDAQGGSLAGGNLQAASGSLAARDQLSLSQGLVDTRLNLAADSIQAHVAQSAAGQGPLTTTLTGYHNGVARKVVVEVDPRDAWLIDQLKAVDAQLATRSARASIGQGYVERTMALNTAQMRVFMDNTNPTLRPVDVQLIQLDKTFRLAADGRFLVTDAYVENFGDGFRVTSPNYNRDHVDSDLNYFGEGALRYMGRMLQLDPAYDGQAPVRMFDVEMGEDVIATHDAAVNFGAPN
>NZ_CP014274.1|WP_062166669.1|1048092_1060170_-|leukotoxin-LktA-family-filamentous-adhesin
MNRIDALTKSASPLKTTLASDSRLRPAGLAVAISSVLGLAMPNGATMAANSVINVQDDAGKRTDTTVSSVAGGAITVTTATVKNGVAFNSFKDFNVAQNEVVNLVLPGANPSKQVNNLVNLVWDSKIYIDGTLNSLLESTGKVGGRVFFVDPMGMVVGKSGVLNVSSLTVATPTSKVMDDILAGGGSLNRLMAGTLTPEQISADGEVSIGGRINARNGVRVQARAIDVTGTILVEVPAGETLNGAFNLQRDDVAVNTGGDDSRIVLVDDGNGQIQLRAAAVVDTGLALSKDATATVTIGCDATSSGCVVGDRAALSGGRIELSALAKADSSYKNPDNTAAGVAAGIRDSLTDISQAGDLLQTAAALGAEKALSGQISFLRANTTARVEVKGNADLAATSGGIDLHASTVQAIDNSAAGKQYELKQKTDANGPVTNADGSPAYERHWVSLGAAYAQINATTEAIIRSGAGIRTDGALSVKADADTQLKLAAQSFATNNTITGFTAAISNVNVATTAMVEQSANKLSVGSVNVSAVNTASLDTAATAYADATGKVGLAGAVSLQDLDATATLARDVDAAGNVTVQAATVTSKNSTTSLVTAPPKEKGKDKDEDKAEDAGSSGDKLMEMVQSFAGKGIAAAKKKLDGDSGNSGNSGGGSPPPSPFRLGGAISYVGGSHTAAATVAAGTRINAGGNVVVDSQVIDAQIANHALSNIQGKGKSNDGSAFTLSGAITIADLEHEASTLVDSGAALKGAHVGLGSNVSLPRDFSALLSAQPKFGSFDEFKDSITNAKKLISDPSDLFTSYGSAKGSADSVALGGVISYFKAKNVASTSLASDARITTTAVDGNPWTAALDARDQTGKQITRSFDKDAVVRASTEITAIHAAGDLGLTLKRVSTGDGGTAVGGSVGYMDYDNSATALINDGAVINSHALEVAAENKETIVSLALQSGQGGSIGVSGTASALDLDSHTLAGVSNKATVTAKSVDVKANEDLFVWSVAGAVTMTDSLSVGASVAYQQMDTDTRAFIGAIPAGYQQGSSAAGAGSISTNALAVNATSEGLSGAVAAAGAMVSSKSQKEEDQKAQQALADKQNGENPAFFDSLKSRASDKVAGLESMAGGLKKLGGDKVSGYFDKAKGLLGSKDAPQSDSGPINQPSFGVAVSGSVTVNRIRQNTKADITSATVHGLDTASKLDIAAINKTLLVSISGAISITKANSDNSNGSAAIAGGVAYSDIANDTHAGLVGSTLDRAGDVSITARNENEQVNVGLGVGVNASSDQSTAVAAAVSATVAMSKSNTTASLAGSTLGNSTGSYDVAVKAVNESKIGNGGGALYVGGKAGMGIAVTYADIADKTTASISGGSISKADDVQMIAADASRIIAAAAAGGVSKEANSVGLAGSVVINQIANQTTATINGGADIAFAGALDVYAGTARIADVRATDDGCSSAMGMDYCGTAVGAVTADANADSGSSSDTQVSAIQRNQARSSIIAVAGMAQVSDSNAGVAFGYNSINNSHVASVAGANISRTSGASGGDIAITAEDHADILAVSAGLGVSTGKFAGVGSASYNQINNTTAALVGIDAAGLAAATALDGKSITLDASDAAYIASLSGAVTVGSKVAVGAALTINEIASKTKATARGAQLTASGDVTLDAQNQAKILSGAIAAGAAGNVAVQGSVAWSTIGNNASADLIGGSVDAANIAVGASNSSKMHTLSGAVAGAGTAAVGAAINVGSIADTTHAGVDGTAVSTGKLDVKSVADSTIKTLAIAGAAAGTAAISASNSSNLIDNTTDASIKGLQRRNAGVVGDVTVNAQTTGAAYSLAGALAGAGSVAVGAASSVNIIGGDTTASVRGSQLDNASGLAVEAGSSNLVRTAAVSGAGAGSVAVGGSVTTNIITSNTSAQLQDTRLDSNVAGVRVHAKDGRSIDSLAGAAAVAGSVGVGAAIAFNQIGGSTSASLVGGSNGYQLHAKNVEVSAQATNAAGNNGANIRTIAAGLGGGGAVGGAASVAVNLMEGQVSARIADGADVVADGDVTVRATQQQGIDVLTGSVAVGGTAAGIGLGTVVNLMTGKTLAQIDGAGTKVSALGWNGASGVLVDAATRQVVNTLGVSQAVSFAPISGQTLSVMAGVDVIGGSTEASITSVSINQHDLSGWVGKWLPQQTVVPGAGGGQPADFEEGGNFYSATALADDTQSVKVKASSDVQANTWILGAAAGAGGSASGAASSMVLQTATKATVRDANLASNGDILVDARGRQSAQTTVMGIAGGLVGGAGTGVVNVFSSNTEASLSGGRTEGGSLSITADNQVDSSIVAGAGAFGAAAAGAGVLVVNMAQTQTGAHLGRAGVATNVDVQGKLDVSARTAAQFDSTVVSGALAGGGAVAGMAQFQQIANTTQADIVDATVVAGRVGVSAREELAVNATSGVAAASLGQGVGAAANITLLGSKVAAGISGGSIRSGGAVDVTASALRNISMITATAGIGLSTGIGGAASVLLSGVGDIGSVLGEVGGTKAALDDLASGPKLDASVTGDAALAGKLDNSHLAQLNGSSSPGLLSLGGKQDQVLATIKGASVDAGSVGVTASNLLTASNIAGVVAAGGLGAGGAVAYSGMYGQTSAAIENGQVNAGNVQVSATSGSASNQPSSTVKAVAGSAGLVGIGAAVAWNDFAQTTTASVSGNVNATRPGGALSVLASDGNSAKVDATGAAVGALAAGAVIAHASRDATVTASVGNNAKLSGFNQVALNALHSGSVSASGTGAVAGLAGAANAVVVLARDSSSVSSVVGEDASIITKGTGVAGPAVGDGSSLQVTASSDATVRATGLGVTVSAGAAVGAVVVDAQAKTDVLAALGNKVNVSGDGNVNIKATRGAALGTGAGVYAEATAGAGGIYFAANAAVANAGDNSVTKALVGNDVVIGSRGDFTVAADSSTRQDAQATGITIGGLALGAAVANASSNTQTIAAVGDRIRGTHANTQADPLQMMGKLAVTANGNDSNLASTFAGSGGLISGAASAAGTTGTSLVSASIGSNAGNGKGILADSITVAAKHQANYGGSADSTNAAVAGASGSKVRNVVDSTVSATLGSGARLFAGQGLGITADNLFYSALDGAAVQAAAGGVINGSAALLETQLTGRTTASVGDNVTLQSGVANKSSGNNNLDIVARTKAVAVDKAQLSTGGAIQVAVVDTRMDADFSNQVSVGNSAKLASLGYLNLGTTTTGSLNSQALVNTWGLAAVGSARSKVEADVIENVNVGTGATLSSVQNAYLSAGKDGTALLESNLLTNAGAEGYVRGLVAIPTVSADAATRAQMGVSLGAGSTLSSSGDIYVGAWGDYFAQRASGRATGYQLGFIPVTINRSSPSGAGAVVSNVAIDGKVIAGTATDVRVGINSNFSCSADIGIGYACMTIAQLKQLDSSFDPGEVVNDNDQVVLIDDIYAAGADVYLKGTNIRIGSTGSVAAHGAPSVDIVNDSAYHLAFGNIYIPDYAGGNVLVAGTVNSGYERISGSSSGAKPHININGNYTQGNGSSILQMGVVNSIGADVRYESKAGSIVSGPVYAASFNTFAPNGTFTFKNRNQDKNVTSSEGLWASYLQGLLGSAYGNADLVAGLLANLQYKGSATNTEQLNNNLLKQPGDANYGGGAIIVYGACLPHVGGSRCGSDQPGYGSYTTFPYNYKNSVKIPTVAYVDTLSGSASYSQNGAIAADTSAIRAREVNITARYIDINGTIEAGAGIDWSLQISDDLNAQNWLAWADTQSGVLSVPSSMVRTIGSASNLISVKYDTAAKRFIVDDVNASGGGKVMLDGSIVSTTNKGKINVTSGFGQVKVDVGLGRDVQLSGMNVATGQDGVVQIIDRLKTSLDGKAAYSVWYVQRAGEQAKAYDNSICGAACSTWETANSISNVSSYNPKAGMRYRWSMEARIGRTIDWASYTAGTWKFLNSSGGEASGAQRWITGGGAYYQANPAGADMEWNYSGSFSNVSNRGVSYGCGVVQSGCNFGFPSPSGGLHWNPSREGAMAATKPGTATASPRTAS
>NZ_CP014274.1|WP_062166670.1|1060276_1061032_-|SapC-family-protein
MKQLLIYDRPVQLNRVAHRNHRVVANDGDFRFASSLNSVPLACVEFARAVRDYPIVFAGNSADSVVPAALLGLRSGQNLMVDAEGRWAEGAYVPAFLRRYPFVLAENEAQGSDFTVCLDAAFEGLREGGEEGAALFDEEGNDSALLSNALEFLQEYQVHLARTRSLTAALVAHDLLVSKQVNVQTAAGETFSLDGFFVVDEQKLRELKGKALQDLAKSGDLGWIYAHLLSLANVELLSKVLDKQAAPAATH
>NZ_CP014274.1|WP_062166671.1|1061570_1064324_-|protein-kinase
MGGERWRQVRELFDAVCELPREQWPHAITAGTADPIVREEVLQLLRSQTVGLSRVSNRLDTALARALAPELGVGERLGPWRLTARIAHGGMGTVFKAERADGLYQRTVAIKLLHGMPGATEVELLGTERQVLADLQLSNVARLYDGGTTPDGHPYLVMEYVDGVPLDGWCAEQALGLPQRLTLFLKICAIVQSAHEQLVLHCDLKPPNVLVQANGQPVLLDFGLARLLNEARDKRDSGYCTPGYASPELIAGQTVGAPSDVYSLGVMLLELLSTQMSTREAPSTGEAVTSPSANAPADLPWRRRLRGDLDAIVARACASDVALRYRSVEALMADLRRYLEMQPVLAREGGRLYRAGKALRRNWQGATIAAGGSALLAVFVFGLWETRRQAQEEAVVAQQVSNFMVGMFESADPFLRTGRGAEELSSRQLLDKASLQVARDLADAPAQLARMRAVLGVAYQNAGASHQADTLLQQAYAGFMDPRVARPLDAANVLADLSVQKTLDGDGELGRQLAGQGLDLIGRKGPAVVQARLYSAKGLALVNQQYFDLGEAAFDTAMALYKDAAGMDVAAEVSELAYNKGLMYLRWGRQASAEREFRQMLGSLHGRRTTLALAAEMRLAQILREQGKYEQALPLLQSGMQYALELYGAESSFVRMQYDGLADLYRDSGDYAAAELHYQKRNALSARLDGQDSVEYSMGLFNYGSLKELRGELAAAEVLYRQAWLIRKNKLGDDSPTSLRAESELARLLMRDGRAGEAGPMLMHADKGLSLSLPADAPGRVQAHLNRIDWHVRSGQLAQARQLLERMDLPVAEELQLRLLGIQADLAVRLGEGERALALRRTAVEFAGSKQGEGSAAVMETRLALAESLLQLGHARLAEEELQRVLPLMGRLQVAGSPDRRKLDGLLLLAARNVSAP
>NZ_CP014274.1|WP_082746496.1|1064344_1064896_-|sigma-70-family-RNA-polymerase-sigma-factor
MSKQITQLLHRWQQGDMDAREHLFEALYSDLMLIARNRLSQQTNGTLQPAALVNESLMRLLGSDAGYKDRTHFVAIAALKMRSVLVDHLRARAAGKRGGNAEQLTLSHADQVPDENGIGYDVLALHQALNQLAELEPRAASTIELTYFGGMSRDEIALVLDVSAPTVDRDLRFARAWLNRQLR
>NZ_CP014274.1|WP_156455947.1|1065341_1066373_+|hypothetical-protein
MLAQTAQAQRFDPGAHKGPQHGVQNEVAVLGTLHLASLPETFDPASLAPLIDRLAAWQPRAIAIEVVSGQQCDTLRRYPARYALTVNDYCPDVSAAAKATGLDVAAANAAADKLLAAWPAQPTPAQRRDLAAKFLAGGERESALVQWLHLPAAERHTDASLNQELVAILEEQRSSRNETTLIAAPLAVRLGHQRLWPTDDHSADRYGPNPKAYVAAIRKAWDNPASKQRSAMYSGLAAQLDTPEKVLATYRRDNGPDVAPAAFASDYGATLEEPSPQGYGRMYVTGWETRNLRMAANIRDLMGPSPGMRTLVLVGASHKAYLDAYLDQMHDVRIVDVQQTLLK
>NZ_CP014274.1|WP_062166673.1|1066748_1067420_-|7-cyano-7-deazaguanine-synthase-QueC
MKKKAVVLLSGGMDSAAVVAIAQEQGFEVHAMSVRYGQRHTSELEAAARVASALGVAGHKVVAVDLRSIGGSALTDDISVPDAGTGDAIPVTYVPARNTIMLSLALGWAEVLGANDIFCGVNAVDYSGYPDCRPEFIAAFQALANLATKAGVEGAGIRVHAPLQYLSKAQIALEGQRLGVDFGLTVSCYQADMDGKACGHCDACQLRADGFAAAGMADPTHYA
>NZ_CP014274.1|WP_062166674.1|1067498_1068188_-|7-carboxy-7-deazaguanine-synthase-QueE
MNSPSAAVPSEIVQSPLPRLKITEIFLSLQGEADTVGWPTVFVRLTGCPLRCQYCDTEYAFHGGDWWDIDDIVAEVLKQGVRHVCVTGGEPLAQKRCLILLQKLCDAGLDVSLETSGALDIAAVDPRVSRVVDLKTPDSREMPRNRLENIPLLTARDQLKFVICSRGDYEWAKSMLAEHRLAERCMVLFSPSKSQLKPRELADWIVADRLPVRFQMQLHKLLWDDAPGY

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Crispr_ID: NZ_CP014274_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_5

1105995-1106076

Orphan

Consensus_repeat	Method
CCCCTCTCCCGCATGCGGGAGAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014274_5

>merge|NZ_CP014274|5|1105995-1106076|CRISPRCasFinder
CCCCTCTCCCGCATGCGGGAGAGGGGCTAATGCACTAGCCACCGACACGATCCGAGCCCCTCTCCCGCATGCGGGAGAGGGG

>NZ_CP014274|5|4|1105995-1106076|CRISPRCasFinder
CCCCTCTCCCGCATGCGGGAGAGGGG	CTAATGCACTAGCCACCGACACGATCCGAG
CCCCTCTCCCGCATGCGGGAGAGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062166692.1\|1091716_1092961_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NZ_CP014274.1\|WP_062166703.1\|1111451_1112333_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_057628776.1\|1104557_1105844_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|180392
NZ_CP014274.1\|WP_062171419.1\|1094109_1094985_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176173
NZ_CP014274.1\|WP_062166694.1\|1095115_1096990_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236729
NZ_CP014274.1\|WP_062166702.1\|1109809_1111387_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225161
NZ_CP014274.1\|WP_062166695.1\|1097301_1099680_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP014274.1\|WP_062166700.1\|1106139_1108728_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_CP014274.1\|WP_062166696.1\|1100013_1101726_+\|Kef-family-K(+)-transporter	unknown	unknown	gnl\|CDD\|182633
NZ_CP014274.1\|WP_062166705.1\|1113053_1115486_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP014274.1\|WP_062166693.1\|1093033_1093927_-\|class-A-beta-lactamase	unknown	unknown	gnl\|CDD\|185339
NZ_CP014274.1\|WP_062166699.1\|1103671_1104322_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225462
NZ_CP014274.1\|WP_062166698.1\|1102623_1103550_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP014274.1\|WP_062166704.1\|1112397_1112871_-\|DUF3574-domain-containing-protein	unknown	unknown	gnl\|CDD\|371896
NZ_CP014274.1\|WP_062166708.1\|1118268_1120047_+\|glycoside-hydrolase-family-15-protein	unknown	unknown	gnl\|CDD\|225922
NZ_CP014274.1\|WP_062166697.1\|1101701_1102580_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|336409
NZ_CP014274.1\|WP_062166709.1\|1120043_1121411_+\|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)	unknown	unknown	gnl\|CDD\|274112
NZ_CP014274.1\|WP_062166707.1\|1117469_1118216_+\|trehalose-phosphatase	unknown	unknown	gnl\|CDD\|319767
NZ_CP014274.1\|WP_062166701.1\|1108903_1109716_-\|DUF3014-domain-containing-protein	unknown	unknown	gnl\|CDD\|378600
NZ_CP014274.1\|WP_062166706.1\|1115824_1117156_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062166692.1\|1091716_1092961_-\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	3.57643e-32
NZ_CP014274.1\|WP_057628776.1\|1104557_1105844_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|180392	PRK06084, PRK06084, bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase.	0
NZ_CP014274.1\|WP_062171419.1\|1094109_1094985_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176173	cd08484, PBP2_LTTR_beta_lactamase, The C-terminal substrate-domain of LysR-type transcriptional regulators for beta-lactamase genes, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators, BlaA and AmpR, that are involved in control of the expression of beta-lactamase genes. Beta-lactamases are responsible for bacterial resistance to beta-lactam antibiotics such as penicillins. BlaA (a constitutive class A penicillinase) belongs to the LysR family of transcriptional regulators, while BlaB (an inducible class C cephalosporinase or AmpC) can be referred to as a penicillin-binding protein, but it does not act as a beta-lactamase. AmpR regulates the expression of beta-lactamases in many enterobacterial strains and many other gram-negative bacilli. In contrast to BlaA, AmpR acts an activator only in the presence of the beta-lactam inducer. In the absence of the inducer, AmpR acts as a repressor. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.34681e-89
NZ_CP014274.1\|WP_062166694.1\|1095115_1096990_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236729	PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional.	0
NZ_CP014274.1\|WP_062166702.1\|1109809_1111387_-\|hypothetical-protein	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	0.000228755
NZ_CP014274.1\|WP_062166695.1\|1097301_1099680_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	6.41166e-81
NZ_CP014274.1\|WP_062166700.1\|1106139_1108728_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP014274.1\|WP_062166696.1\|1100013_1101726_+\|Kef-family-K(+)-transporter	gnl\|CDD\|182633	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional.	0
NZ_CP014274.1\|WP_062166705.1\|1113053_1115486_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	4.2982e-55
NZ_CP014274.1\|WP_062166693.1\|1093033_1093927_-\|class-A-beta-lactamase	gnl\|CDD\|185339	PRK15442, PRK15442, beta-lactamase TEM; Provisional.	5.89206e-68
NZ_CP014274.1\|WP_062166699.1\|1103671_1104322_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	2.68366e-76
NZ_CP014274.1\|WP_062166698.1\|1102623_1103550_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.94973e-53
NZ_CP014274.1\|WP_062166704.1\|1112397_1112871_-\|DUF3574-domain-containing-protein	gnl\|CDD\|371896	pfam12098, DUF3574, Protein of unknown function (DUF3574). This family of proteins is functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.	2.93985e-43
NZ_CP014274.1\|WP_062166708.1\|1118268_1120047_+\|glycoside-hydrolase-family-15-protein	gnl\|CDD\|225922	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism].	4.75821e-83
NZ_CP014274.1\|WP_062166697.1\|1101701_1102580_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|336409	pfam06445, GyrI-like, GyrI-like small molecule binding domain. This family contains the small molecule binding domain of a number of different bacterial transcription activators. This family also contains DNA gyrase inhibitors. The GyrI superfamily contains a diad of the SHS2 module, adapted for small-molecule binding. The GyrI superfamily includes a family of secreted forms that is found only in animals and the bacterial pathogen Leptospira.	3.57017e-29
NZ_CP014274.1\|WP_062166709.1\|1120043_1121411_+\|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)	gnl\|CDD\|274112	TIGR02400, Alphaalpha-trehalose-phosphate_synthase, alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsible for synthesis of only trace amounts of trehalose while the majority is synthesized by the TreYZ pathway; the significance of OtsA in this species is unclear (see Wolf, et al., ). [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP014274.1\|WP_062166707.1\|1117469_1118216_+\|trehalose-phosphatase	gnl\|CDD\|319767	cd01627, HAD_TPP, trehalose-phosphate phosphatase similar to Escherichia coli trehalose-6-phosphate phosphatase OtsB and Saccharomyces cerevisiae trehalose-phosphatase TPS2. Trehalose biosynthesis in bacteria is known through three pathways - OtsAB, TreYZ and TreS. The OtsAB pathway, also known as the trehalose 6-phosphate synthase (TSP)/ Trehalose-6-phosphate phosphatase (TPP) pathway, is the most common route known to be involved in the stress response of Escherichia coli. It involves converting glucose-6-phosphate and UDP-glucose to form trehalose-6-phosphate (T6P), catalyzed by TPS, the product of the otsA gene, this step is followed by the dephosphorylation of T6P to yield trehalose and inorganic phosphate, catalyzed by a specific TPP, the product of otsB gene. This OtsAB (or TSP/TPP) pathway, is also the most common route known to be involved in the stress response of yeast In Saccharomyces cerevisiae, the corresponding enzymes, TPS1p and TPS2p, form a multimeric synthase complex together with additional regulatory subunits encoded by Tsl1 and Tps3. Trehalose is a common disaccharide accumulated by organisms as a reservation of carbohydrate and in response to unfavorable growth conditions. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.25365e-58
NZ_CP014274.1\|WP_062166701.1\|1108903_1109716_-\|DUF3014-domain-containing-protein	gnl\|CDD\|378600	pfam11219, DUF3014, Protein of unknown function (DUF3014). This family of proteins with unknown function appears to be restricted to Proteobacteria.	1.23813e-53
NZ_CP014274.1\|WP_062166706.1\|1115824_1117156_+\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	2.17249e-41

>NZ_CP014274.1|WP_057628776.1|1104557_1105844_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MTDPQWKPETIAVHGGYSPDPTTRAVAVPIYQTVAYAFDDTQHGADLFDLKVQGNIYTRIMNPTTDVLEKRIAALEGGIGALALASGQAAITYAIQTIAEAGDNILASSALYGGTYNLFAHTLPQFGIQTRFADYRDPQAFAALIDERTKAVFVESIGNPRGNITDIEAIAKIAHAHGVPVIVDNTVATPYLQRSFDFGADIVVHSLTKYLGGHGTSLGGAIVDSGRFPWAEHKQRFPRLNTPDVSYHGVVYTEALGPAAFIGRARVVPLRNMGAAISPFNAFQILQGIETLALRMDRINSNTLAVANFLQKHAKVAWVNYAALPDHPEHALVQKYLRGHGSGVLTFGLPGGREAGARFLDALQLFTRLVNLGDAKSLATHPASTTHRQLDEAELEKAGVTLDTVRLSVGIEHIDDLLADLEQALAGA
>NZ_CP014274.1|WP_062166699.1|1103671_1104322_+|NAD(P)-dependent-oxidoreductase
MKVALIGATGFVGKALLEELLARGHEVTALARDPAKLQPRPHLQVVKADVLDADEVRAAVAGADTVISAYNAGWANPDLYNEFLRGTRAIVAGTKAAGVKRYIVIGGAGSLYAPDGTQLVDSPNFPPAIYPGASAARDALTELRNETSLAWTQLSPPVAFHPGSPTERTGKYRVGTDTPLSTGEGPGTISAADLAVAVVDELEAPQHIGKRFTVAW
>NZ_CP014274.1|WP_062166698.1|1102623_1103550_-|LysR-family-transcriptional-regulator
MDSVKRMALFAQVVQHGSMSAAARAMGMSTSAVSQQLRALEHEAGVALLHRSTRRLALTDVGSRYYAACARVLDAAGEAQAELSAARQVPSGELRLSAPLGMAAHIGPALGGWLQDNPQLRLHLFFDDGWTDLLQARIDLALRFGQLPDSDWMAQRLGSLQRWPCAAPAWLQQHGVPGDPLQVPAAEWLGMPQVPGLVWRQQESGQERLVPAHPRIASQNQPAVLRLCEAGLGVAVLTSLDAAPLLEAGSLQRLLPEWEVPALPVWAVTPHRQTQPAKVRQAIVLLQDHLARLPGAEAEAAQDRKRQR
>NZ_CP014274.1|WP_062166697.1|1101701_1102580_-|helix-turn-helix-domain-containing-protein
MKANVAQLPRLDRVISCLQQSIDAGGPLPDLDALAAIAHYSPFHFHRVYRALTGETIGRTVQRLRVVKALQRLAHSNASVTEIALLAGYDTPQALARVLRDTVDASASQLRMDPQRMANSIEQLSRPLPLAEETAPLSVEVITLEPFEVVALRAQGAFDDLDAVFGELFGWAAEQGLVEQLQQLIGMPLGDHRELPADELLFDCALVFDAELPAVPAPLQRLVLGGGRMVRLRHVGSYGLLEEATDQLLRDWLPGSGHALRDAPLHYHFLDDPEDVPEAILRADIYVPLAAG
>NZ_CP014274.1|WP_062166696.1|1100013_1101726_+|Kef-family-K(+)-transporter
MHHDTALINMIAIGLGLAFVLGALANKLRLSPLVGYLLAGVIVGPFTPGFVADQALANQLAEIGVMLLMFGVGLHFSLKDLMAVKAIAIPGAIGQILVATLLGWGVATLMGWPVLHGVIFGFSLATASTVVLLRAMEERRLLETTRGKIAVGWLIVEDLACVLALVMMPVIAEVFGPDASGKELSIGGLLASIGWTFVQLGLFVAVMLVVGRRVIPWVLERVAGTGSRELFTLCVLAIALGVAFGAAELFGVSFALGAFFAGMMLNESELSHKAAHDSLPLRDAFAVLFFVSVGMLFNPMIIVEHPWQVLATVMIIMFGKSAAAFFIVRAFGHSKSTALTISASLAQIGEFAFIIAGLGVALKILPPTGQSLVLAGALVSIMLNPVVFGLLDRWQARHKEIAPVAEVPDIPPGPSLDLQDHAIVVGYGRVGSELAQVLRDRGVPVLVIDDNREHVERAHAAGIPGIRGSAASDKVLAEAHPERATIAVLAIPQPLESGEVLAKLRAINPNLTLLARAHSDAEVKHLLAHGADGTVMAERELAYSLAEMIMSTPPYRSLRPGMPQPAASGT
>NZ_CP014274.1|WP_062166695.1|1097301_1099680_+|TonB-dependent-receptor
MNRKSSTLAVAIAIALGAPALPALAQSSANTLDTVIVTGTRVADRTVAESQSPIDIITPEALQSTGTTELATALARALPSLNFPRPALTDGTSGIRPAQLRGLSPDQVLVLVNGKRRHTSAMINVNGSIGRGSSAVDINAIPIAAIERVEVLRDGASAQYGSDAIAGVVNIVLKGSGKGGSLAVDYGQYSAGDGNKYQLSGDTGVSFGDGRGSVHFAGQISQQDESNRAGPYQGTTPNTGNFPSIGEKTFVVGDPRVDATAASVNASFNFSDSISAYASALLSNRDITSFAFYRSPNHSGQTALLAQTYPDGYVPQINQYSKDRSLVAGVKGNTESGWTWDVSVNHGENTLDFHTRNSINYSLGVNSPTSFYDGTLKYQQDIFNADITKSLDWGLAYPVTLSFGGEYRREKWEQNAGELNSYTGSGAQGFGGFTPTNEVHNDRHNYALYAGLEADLTEKFSAGLTGRYEDYSDFGDKFSGKLSARYAFTDKVALRATASSGFRAPSLAQQSYQAVTSTIINGVFVDRGTFPTTSAAAQALGASPLKAESSTSYSVGLVLQPVDRLYLTVDAYQIDIDDRIVLSTNITTNAAANALLAGLGLPQVTAFSYFTNGVDTRTRGVDAVSSYTIPFAASNLELTAAYSYNETEVKKFIASPAVFGSLGITQSLIGRDEIGRIEDSFPRDKAIVSGTWRSDRWELGLSATRYGSFTVRNSATASRDQTYDPKWVLDASASFKASENWKLTLGADNLLDEYPDRTADLQNSTWGMLPYSNYSPFGFNGAYVYGRISYTW
>NZ_CP014274.1|WP_062166694.1|1095115_1096990_-|ATP-binding-cassette-domain-containing-protein
MISLRNFALRRGERLLLSNVDLTLHAGYRVGVVGRNGAGKSSLFAAVRGELEADKGDVSLPGKIRIADVAQETPALADRAIDYVLGGDDVVAAVLQEEAAAAAREDWEAVANAHQKMAELNAYDAEARAGKLLHGLGFPADTHERPVAAFSGGWRARLNLARALMMPSDLLLLDEPTNHLDLDAVYWLEQWLLKYPGTLLLISHDREFLDNVATHTLHLHSGTAKLYVGGYTDFERQRAEHLRQQQITHEKEQAERAHLQSFIDRFKAQASKATQAQSRMKRLAKMAGTEAVRAEREFRIEFSPPAKLPFSLIRLNDVTAGYGPDAVILDNVGFGLEAGQRVGLLGPNGAGKTTLVKSLVGDLPLLAGDRMAHPDLQIGYFAQHTVESLHAGMTPMDHFREIAPDGVNQSFRDFLGKWNFPGDRAFETVDGFSGGERARLALALIAWQQPNVLLLDEPTNHLDLEMREALAEALSLFEGAIVMVSHDRHLIGLVCDTFWRVADGVVEPFAGDLDEYAQWLRTRASAQGARTKSDRQEKPVAAPVAQVAPAKPASNKKPVNPHKLEAAEKKVEQLGASLADVDAQLADSGNYADAAKMAKLGSEREVLAQQLEQAEAAWMEMLED
>NZ_CP014274.1|WP_062171419.1|1094109_1094985_+|LysR-family-transcriptional-regulator
MIRPQLPLNALRAFEAAARHLNFTRAALELCVSQAALSHQIRGLEDRLQVSLFHRLPRGVALTDEGAALYPVLTESFDRMAIALDRFTGGRFREVLTVGVVGTFATGWLLPRLAAFEAAHPDIELRVQTHNNRIDLAGEGLDLAIRFGDGDWQGQDCVPIVDTPFAPLCAPAVARRLRQPRDLGNVPLLRSYRNDEWPRWLELAGVSGVEARGAVFDSSLTLATAAATGAGVALLPLRMFEQDLAEGRLLQPFAQTLSLGRYWLTRLRSRQEREALKRFRLWLQAQGGLDL
>NZ_CP014274.1|WP_062166693.1|1093033_1093927_-|class-A-beta-lactamase
MLARRQFLMLGGAALASTLVPAALAKTAQAAAPAAVSDADFATLEKTSGGRLGVCLWHPASGARYGHRMDERFPMCSTVKFPLAAAILHRVDAGKLSLDQRVAVRQGDIISHSPFTERHVGKDMTVRDLCRATLIISDNAAANLLLPLIDGPAGLTAFLQAQGDRITVSARNEPELNHFAPGDPRDTTSPAAMAGNLQRFLLGDVLSPASRQQLADWLIDNQTGDARLRAGLPQGWRVGDKTGSNGQDTSNDIAALWPLAGGAPWLLSCYLQGSALDDDGRDGILRQVGELAGARLG
>NZ_CP014274.1|WP_062166692.1|1091716_1092961_-|cation:proton-antiporter
MTREVIYLLLIFALLVIPRALQRFSIPAPLTCLVFGIGAMLWLGDGSHDPVVNLLATLGISSLFLFAGLEVDMADLRKGMWPLLTHLLIRSATLTGVAWLAWHYTGMPWQAAALLALALLTPSTGFIMDSLSQLGLDDAERFWVSSKAIAGELLALAALFVVLQAGDPVHMALSSLTLVAMMVGLPLLFIGLGRWVAPHAPGSEFSLLVMVGMLAAYITYALGVYYLVGAFIAGLVARLLQQRMPLLASHENLHALRLFASFFVPFYFFNAGTKVPAEALSFEALGLGLLITLVVLPLRIAVIWLQRRLLFGESFRTSLRVALALSPTLIFTLVLAAIMRERFAISPVLFGALLLYAALTTLLPSLVFRRPLDVDPLSNETTPPTDPAVVRDEDAAEAPAPASSSVSGSYVPPR
>NZ_CP014274.1|WP_062166700.1|1106139_1108728_-|ATP-dependent-chaperone-ClpB
MRMDKLTSNFQKALSDAQSLAVGRDNNIIEPVHVLAALLDQPGGSSRPLLAQAGVNVPVLRERLSEALDALPKVSGQAGSLSMGNDLNRLLNSTDKLAQQHNDQFIASEWFLLAAVDDGGPAGMALRAAGADKNKVKAAIDKLRGGETVQSENAEEQRQALEKYTIDLTARAESGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINDEVPEGLRGKRVLSLDMGALIAGAKFRGEFEERLKAVLNDLSKNEGQIILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCIGATTLDEYRQYIEKDAALERRFQKVFVGEPTVEDTIAILRGLKERYAVHHGVEITDPAVVAAATLSNRYITDRQLPDKAIDLMDEAASRIRMEIDSKPEELDRLERRLIQLKIQREMLKKEKDDASRKRLADLEADIDTLEREFSDLNEIWKSEKAALQGATKIKEQVEKAKLDLEAAQRRQDFAKMSEIQYGLLPNLEKQLAAAQEVDRKDFRLVQDKVTDEEIAEVVSRWTGIPVSKMLEGERDKLLRMEDMLHNRVVGQEEAIRVVSDAVRRSRAGLSDPNRPSGSFLFLGPTGVGKTELTKALADFLFDSPDAMVRIDMSEFMEKHSVSRLIGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSHQIQDMSGDDSPEAYMQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKQQIKQIARIQMRGLEKRLGERGLRLDVSDSAFDVLSNVGFDPVYGARPLKRAIQAQLENPLAQKILSGEFVSGDTIKVEAGGGGQLQFGKG
>NZ_CP014274.1|WP_062166701.1|1108903_1109716_-|DUF3014-domain-containing-protein
MQKRKAVWPWVVVGVVAVGGAGWWLFRDDVAQLRQAAPAAVVPAEGVAAAPIAAPAATQLPAEPKYPLDAAADPALPALADSDAGLLQALGELFPAQSLAVLLREQLIQRLVVHVDNLTQPSLPGAAMALRPLPGTLQVEPGPAGGEQLAAANAARYDPFVDAFSRADVDAMAKAYSRFYPLVQQAYRQIGHPDGHFNDRLVVVIDHLLQTPEPARPLAVEADGKGRYRFVDPALQSLSVGQKALLRMDLAQQQAVKRQLRALRAAVTRG
>NZ_CP014274.1|WP_062166702.1|1109809_1111387_-|hypothetical-protein
MNSSASASQPRWFVAGDLNGFFGLVVDNLSILGFIAMALIGIFQFPAEVVFGRMFPGTAFGVLIGNLMYTVMARRLAARSGRDDVTAMPLGLDAPTSIGMALLVLGPAFVGFKQLGMDPQAAAMATWKLGMASLVVMGLLKLVLSFVGDAVTRHVPRAALLGSIGGAALTLLGFLPLIESMRQPLVGLVTLGVLLYVLVARGVVPLRLPGVLFALLVGVALYYGLGAAGALTGFQWPPAISFAVALPLPTLGFVEGLPLTVPYLSLLLPFGLLMIVGGINVAESARAAGDDYRTRDILLVEAIATLVAGVCGGVAQTTPYIGQPAYKRLGARTGYTLLTGLFIGIGGMLGVVAGLVQWLPVAVLAPIIVFVGLDITVQAFQQTKREHAIAVALAFLPAIAYLINIKFGTWVAPDAAAALYAAVDGHGLSDVATLQLLGNGFIITAMLWAAALVALIERRPGVAVGLLFVAAALSAFGVIHSTDPRGGIYMPWQLEGLRQAITLQVTAAYAVLAVVIGLMSLQKQR
>NZ_CP014274.1|WP_062166703.1|1111451_1112333_-|hypothetical-protein
MKATSRPRRTACGLLIAGLSVFAANAVAADNGEIRFEVSPGVTAQARLQGDGRIEVGTNRSSHRQLLQAGTDEEGGSRLGHADFNFDGYQDLYSSATLGQVNESYAVYLYMPASGEFQALAAPTGAAASCEGFWSLTPDPATHSLSSSCRGGPMWYTDFYRYQDGNLYLYRSMRSAYIDTGALSQVLAVDAPDEDEVMVVWSTWDASGKRLDTALWNAFDPPREDAPMPGRSASVVPDKLPLYSKVGDTSTKRYLLKGDRVELLDEADGWLQLRYQNPRHGPVLGWVKLPTSE
>NZ_CP014274.1|WP_062166704.1|1112397_1112871_-|DUF3574-domain-containing-protein
MKLHAVLLPLLFAVAASAHAVPPAAEPAPSAQLHGDAARPAEAGGWVRSELYFGVGEESGPSAREQTEVISEAQWRAFLDKEVTPRFPDGLTVFDAYGQWLFRGAPEPNRLRTKVLVILHEDSPQRRNDIEAIRLAWKQATKHQSVLWSRQPVEVSF
>NZ_CP014274.1|WP_062166705.1|1113053_1115486_+|TonB-dependent-receptor
MSRPTSAPLGLAIALVLSSPAFAQDAPQATNLDTVIVTGTRAVDRTVLESTAPVDVLSAEDIRKAGVVNGELGSALQALLPSFNFPRQSNSGGADHVRAAQLRGLSPDQVLVLINGKRRHNSALVNTDSKIGKGTTPVDFNAIPVSAIKRIEVLRDGAGALYGSDAVAGVINVILDDAPEGGAIEASFGAHHTDLKPIDRTLTDGQTSYFSAKVGTALTDDGGFLRVGLELKNREATNRAGFDQIPPWEAQTPDNLALAGKRNYSLGDGASKDLNAWFNAEIPFGATSKAYAFGTYNQRDTEGANYFRYPDGEANWKALYPNGYRPISEGENLDVQLVAGARGEWGDWNYDASLDHGRNEFTYRLRNSLNASLGPSSPTRFKTGDFSFAQTVANLDVGRIFVRANDTHSLGFGIEGRHERYETGAGDQASYAAGPYTDRPTGSQAGGGLTPQDEADLSRDVVSAYTSLSSTFGEKFSTDIAARYEHYEDFGGELTGKIGARYAFAPAFALRGSISNNFHAPSLSQIGYESTSTGYTAGGQLVQGRLLSVNNPIARALGATDLKPEKSINYSLGFTSQIGSHFDLSLDLFQIDIDDRIALSESITGDALTDFVQQQFGVSGLESAHYFVNAADTRTRGAEFVGNWRQSLGDGELLLTGTWSYAKTELKNVLATPAQLLALDPDYVLFGVEESNTLTDAAPRTRAQFATSWANDNWSLSSRLSRHGSAKRVFDFGDGYVPTQTYQAEWQLDAEVEYRITPQWSVAVGGQNLTDNYPDKSNEDIYYFGNLPYDVLSPIGSNGAYWYGRVRFTF
>NZ_CP014274.1|WP_062166706.1|1115824_1117156_+|OmpA-family-protein
MFESLIREAATRFHLGDNAGRLVRQLVDVIFDPATGGFAGLQKRFADAGLDSLFSSWIGSTPGDNVLQPDQFSAGFGQNLAGGIASKLGIPAAAVNMAGAWLLPKIIGQLTPGGRIPTSRPADYERWFGTTTPTAGYSGGSTVPAKASGGFWKWLIPLILLLAAFLLFRSCKKEEAAAPAPMQPAPTAQPAAPVAQANPRFGFDNTDGKITVSGQLATEADKTRLWDALKANFGEGNLAGNISVDPATLPAGWMDKLIAALPELKAKGLKFGLDGDKLTIDTSGMAEADRFSVSDKLRSLFSGFEISGLWDRAAAAMSGLKAGFSGDDLVKALNLMNIYFDTGSATITRDSMETLTSAANAIKQAPAGTKIEVGGHTDNTGNAEANVTLSQQRADAVAAKLAELGVAADTLSAKGYGQTKPRASNDTDEGRAQNRRIEFAVGK
>NZ_CP014274.1|WP_062166707.1|1117469_1118216_+|trehalose-phosphatase
MLDDLQRPPPPALATDDALFLDVDGTLLAFADHPDKVAPDPSLLTLLASVQQRLGGALALLSGRPVSQLQAMFAPLRLPMAGLHGAQLLATADAQSTTSDAAAWLHALHERAMHLAHAHPGVLIENKGQALALHWRNAPEAGDAVVEFANAQLPQLAGVRLQPGNHVIEFVGSGHDKGRALQQLMQNAPFKGRRPLFVGDDLTDEHGFRAARQLGGIGVLVGQREDSQASCALRDIGAVHAWLRAAIT
>NZ_CP014274.1|WP_062166708.1|1118268_1120047_+|glycoside-hydrolase-family-15-protein
MQDATLDLGVVGNGSFGALIDKQARVVWSCLPSFDGDPAFCALLGPIQHPGGDFGIELEDFLDSEQSYLTNTAILRTVLRDTHGGAVEVIDFAPRWRQNDRFYRPVSLIRQVTPLSGNPRIVVRARPLAEWGARQPETTWGSNHIRWLLPDLVLRLTTDVPVRFVRDGLPFVLNHRVHLVMGVDESLNRSLSGYVQEAMQRTRDYWREWVRYLSVPLEWQEAVIRSAITLKLCQYEDSGAIIAAMTTSIPEAPGSSRNWDYRYCWLRDAAFVVRALNRLGATRTMEQFLGYIFNLATNDGSLQPLYGIGFEAKLDEDEVTTLSGYRGMGPVRRGNLAWVQRQHDVYGSVVLASTQLFFDQRLQDPGDAHTFARLEPLGEQAFALHDVPDAGLWEFRGRTEVHTYTSAMCWAACDRLSKIATRLKLDGRAMYWRERANQIHARIMRESWSEQLGHFTDTFGGHRLDASLLLLADIGLIDANDARFVATVEAIGRDLKHGNALYRYVAPDDFGTPETSFTICTFWYIDALAAIGRMDEAREMFEILLQQRNHLGLLSEDLTFDGQAWGNFPQTYSHVGLVIAAMRLSRSWQEAS
>NZ_CP014274.1|WP_062166709.1|1120043_1121411_+|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)
MSRLVVVSNRVALPGETRAGGLATGLLAALSERGGLWFGWSGRSVSGDSGTLHEAQDGPIRYLTMDLSKTDLDNYYNGFANRALWPLLHFRLDLVDYDRRKREGYWKVNRLFADTLAPLLRDDDTVWIHDYHLIPLAAMLRERGVGCRIGFFLHVPVPSADLMQALPDHRELFSALYSYDLLGFQTRRDVDRFQSYVRLFGGGQLIDSDWISAPDGHRVRTSAFPIGIDTEHIARQARSAASNKAVRDLRQSLQHRKLAIGVDRLDYSKGLPERFHGFERYLQRYPREKGDMTFLQIAPVSRGSVNEYRKLRGELERLAGHINGGHAEADWTPLRYVNQNYAHSTLTGFYRQAAVGLVTPLRDGMNLVAKEYIAAQDPDNPGVLVLSLLAGAADELKQALLVNPHDLDGVADAIAAAANMPLGERIERWQVMMEHLRQYDIHRWRRDYLLALEGR

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Crispr_ID: NZ_CP014274_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_6

1134057-1134192

Orphan

Consensus_repeat	Method
CCCCTCTCCCGTTTACGGGAGAGGGGTTGGGGTGAGGGCGCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014274_6

>merge|NZ_CP014274|6|1134057-1134192|CRISPRCasFinder
CCCCTCTCCCGTTTACGGGAGAGGGGTTGGGGTGAGGGCGCTTTTCGCGGGTAAAGCCACTTGCCGAGCATGGCTCGGCACTACCGCTTCAGCCCCTCTCCCGTTTACGGGAGAGGGGTTGGGGTGAGGGCGACTT

>NZ_CP014274|6|5|1134057-1134192|CRISPRCasFinder
CCCCTCTCCCGTTTACGGGAGAGGGGTTGGGGTGAGGGCGCTTT	TCGCGGGTAAAGCCACTTGCCGAGCATGGCTCGGCACTACCGCTTCAG
CCCCTCTCCCGTTTACGGGAGAGGGGTTGGGGTGAGGGCGACTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062166723.1\|1139015_1139882_+\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900
NZ_CP014274.1\|WP_062166727.1\|1144423_1146244_-\|autotransporter-domain-containing-esterase	unknown	unknown	gnl\|CDD\|238883
NZ_CP014274.1\|WP_062166728.1\|1146388_1146589_+\|sulfur-carrier-protein-ThiS	unknown	unknown	gnl\|CDD\|168159
NZ_CP014274.1\|WP_062166711.1\|1121964_1122516_-\|DUF4166-domain-containing-protein	unknown	unknown	gnl\|CDD\|379359
NZ_CP014274.1\|WP_062166718.1\|1130913_1132539_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|236901
NZ_CP014274.1\|WP_057629745.1\|1142050_1142728_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP014274.1\|WP_062166720.1\|1134240_1135971_-\|type-IV-A-pilus-assembly-ATPase-PilB	unknown	unknown	gnl\|CDD\|274186
NZ_CP014274.1\|WP_062166717.1\|1128589_1129465_-\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NZ_CP014274.1\|WP_062166716.1\|1127329_1127710_-\|endonuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|238509
NZ_CP014274.1\|WP_062166712.1\|1122500_1123280_-\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|182677
NZ_CP014274.1\|WP_062166713.1\|1123279_1124269_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	unknown	unknown	gnl\|CDD\|183020
NZ_CP014274.1\|WP_062166726.1\|1143090_1143966_-\|30S-ribosomal-protein-S6--L-glutamate-ligase	unknown	unknown	gnl\|CDD\|182468
NZ_CP014274.1\|WP_062166714.1\|1124386_1125271_+\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|226590
NZ_CP014274.1\|WP_062166722.1\|1137755_1139012_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NZ_CP014274.1\|WP_062166721.1\|1136805_1137219_-\|pilin	unknown	unknown	gnl\|CDD\|227304
NZ_CP014274.1\|WP_062166715.1\|1125690_1127328_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NZ_CP014274.1\|WP_062166724.1\|1139937_1140555_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP014274.1\|WP_062166719.1\|1132597_1134001_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP014274.1\|WP_057629765.1\|1129486_1130656_-\|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
NZ_CP014274.1\|WP_062166725.1\|1140717_1142058_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062166723.1\|1139015_1139882_+\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	9.80965e-61
NZ_CP014274.1\|WP_062166727.1\|1144423_1146244_-\|autotransporter-domain-containing-esterase	gnl\|CDD\|238883	cd01847, Triacylglycerol_lipase_like, Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Members of this subfamily might hydrolyze triacylglycerol into diacylglycerol and fatty acid anions.	1.22106e-73
NZ_CP014274.1\|WP_062166728.1\|1146388_1146589_+\|sulfur-carrier-protein-ThiS	gnl\|CDD\|168159	PRK05659, PRK05659, sulfur carrier protein ThiS; Validated.	8.33032e-27
NZ_CP014274.1\|WP_062166711.1\|1121964_1122516_-\|DUF4166-domain-containing-protein	gnl\|CDD\|379359	pfam13761, DUF4166, Domain of unknown function (DUF4166). This domain is often found at the C-terminus of proteins containing pfam03435.	3.65551e-25
NZ_CP014274.1\|WP_062166718.1\|1130913_1132539_+\|PAS-domain-containing-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	2.85278e-39
NZ_CP014274.1\|WP_057629745.1\|1142050_1142728_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.09667e-73
NZ_CP014274.1\|WP_062166720.1\|1134240_1135971_-\|type-IV-A-pilus-assembly-ATPase-PilB	gnl\|CDD\|274186	TIGR02538, Type_IV_pilus_assembly_protein_PilF, type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP014274.1\|WP_062166717.1\|1128589_1129465_-\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
NZ_CP014274.1\|WP_062166716.1\|1127329_1127710_-\|endonuclease-domain-containing-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	3.60209e-47
NZ_CP014274.1\|WP_062166712.1\|1122500_1123280_-\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|182677	PRK10723, PRK10723, polyphenol oxidase.	3.77316e-86
NZ_CP014274.1\|WP_062166713.1\|1123279_1124269_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	gnl\|CDD\|183020	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD.	4.25177e-151
NZ_CP014274.1\|WP_062166726.1\|1143090_1143966_-\|30S-ribosomal-protein-S6--L-glutamate-ligase	gnl\|CDD\|182468	PRK10446, PRK10446, 30S ribosomal protein S6--L-glutamate ligase.	1.19814e-128
NZ_CP014274.1\|WP_062166714.1\|1124386_1125271_+\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|226590	COG4105, ComL, DNA uptake lipoprotein [General function prediction only].	9.33775e-89
NZ_CP014274.1\|WP_062166722.1\|1137755_1139012_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	2.22962e-148
NZ_CP014274.1\|WP_062166721.1\|1136805_1137219_-\|pilin	gnl\|CDD\|227304	COG4969, PilA, Tfp pilus assembly protein, major pilin PilA [Cell motility and secretion / Intracellular trafficking and secretion].	5.37013e-25
NZ_CP014274.1\|WP_062166715.1\|1125690_1127328_-\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NZ_CP014274.1\|WP_062166724.1\|1139937_1140555_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	7.5636e-83
NZ_CP014274.1\|WP_062166719.1\|1132597_1134001_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_CP014274.1\|WP_057629765.1\|1129486_1130656_-\|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
NZ_CP014274.1\|WP_062166725.1\|1140717_1142058_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.02031e-47

>NZ_CP014274.1|WP_062166719.1|1132597_1134001_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MNATHSALIVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNHFDLCLTDMRLPDGNGIELVTEITRDHPATPVAMITAFGSMDLAVEALKAGAFDFVSKPVDINVLRGLVRHAIELNNAARPSTPPPPENATRLLGSSPAMDELRATIGKVARSQAPVYILGESGVGKELVARTIHDQGARAAGPFIPVNCGAIPGELMESEFFGHRKGSFTGAHADKPGLFQAASGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGAATEVTVDVRILSATHKDLGTLVQDGRFRHDLYYRINVIELRVPPLRERRSDLPQLAGTILQRLAQSQGQKPPHLAGSALEALDAYSFPGNVRELENILERSLALADGDRIDANDLRLPQPQSALQRAAAEGAATGAVAVVQEAVVDIDPANAALPSYIEQMERTVIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME
>NZ_CP014274.1|WP_062166718.1|1130913_1132539_+|PAS-domain-containing-protein
MAPSPSIIDRIESIPTRELYFFALYRVLVAALLSALVFGPLTSMVGEAHQPRLAQSVSIAYLLVSAALLIWGRNERWLQRIVFGSVVIDIIAATLLSHALPGASAGISMSLLFNIAAAGLLLPLSPALLLALLACAASIAEYVWQMVEGSQNTRTLAELAMFVTSYLALTFIAYQIGSRTRRTQQLADRRGVEVANLFEVNELIIRRMRTGVLVVDATGHITLANEAATALLGDMEGALAVDRVALSIASPELARRLQRWRNGWHEDEPPLQLAPEQAEVLPRFARLLADSDMSLIFLDDTTVVSRRAESLTLSTLGRFSASLAHEIRNPLAAINYATQLLEESEDLGEADRRLLQIIHQQCQRTNGIVESVLALARRERANPENLDLAAFVRRFVLEYRQTLSLENDSLEAVIREPSVVAMMDPRHLHQVLTALVHNALKYGRMADEPARIRIRVASAGRNAVIDVMDRGPGIPDAIASQLFRPFYTTSEHGTGLGLYIARELCRANQAQLDYVSIPAGGACFRLTLSTPKTAFTRSERQ
>NZ_CP014274.1|WP_057629765.1|1129486_1130656_-|ADP-forming-succinate--CoA-ligase-subunit-beta
MNFHEYQSKQLLAEYGIPVPAGKVAATPDEAVAAAQSLGQGPWMVKAQIHAGGRGKAGGVKFCKTTDDVKAAAAKMLGTKMATYQTAGVELPVNLVLVTTAGEIVKELYLSVLVDRGTKTITYIASSEGGVEIEQVAAETPELIHSLNVDFVEGVQGYHGRDFGFKLGLTAKQAGQFASIMVNLYRLFNEKDLALVEINPLAILDDGNLYALDGKFDSDDNAAFRQKALVAMRDKTQEDPTEVIASELDINYVTMDGNIGCMVNGAGLAMATMDVIKLNGGEPANFLDVGGGANKQRVIEAFKLILSSDKVEGIFVNIFGGIVRCDMIAEGIIAAVKEVGVKVPVVVRLEGTNVEEGKQLLRDSGMAIIPADNINDGAKKIVEAVKNAA
>NZ_CP014274.1|WP_062166717.1|1128589_1129465_-|succinate--CoA-ligase-subunit-alpha
MSVLINKNTKVIVQGFTGQQGTFHATQMIEYGTQVVGGVTPGKGGTTHIDLPVFNTVADAVQNTGANASVIYVPPPYAADAILEAAAAGIKVIVCITEGIPVLDMLRVKNVLTRSHPDTVLIGPNCPGVITPGECKIGIMPGHIHMPGKIGIVSRSGTLTYEAVKQTTEVGLGQSTCIGIGGDPINGLNFVDCLKLFNEDPQTEGIIMVGEIGGDAEEAGAEYIKQFVKKPVVGFIAGASAPAGKRMGHAGAIASGGKGTAEGKFAAMEAAGVVTVRSPGDLGAAIAKLVK
>NZ_CP014274.1|WP_062166716.1|1127329_1127710_-|endonuclease-domain-containing-protein
MREGSKTGCARALRRRMTEAERRIWYFLRSRHLVGFKFRRQHPIGPYVVDFACLAHKLVIELDGSQHATDPNDLRREAFLHRNGYRVLRFWNNEALSHTAAVCESILRAVGVTPSPRRVRGQAEGC
>NZ_CP014274.1|WP_062166715.1|1125690_1127328_-|NAD+-synthase
MSQSLRIALAQFDFPVGDVDGNASRIIELMHEARDEYGAEVVLFPELAISGYPPEDLLMRPGFLRSCEQALARVAAEAQGIVAVVGWPQSAGAVVYNAASVLREGAVAQTYRKRELPNYAVFDERRYFDVDPDGGNCVFEVNGVQLGLVICEDLWFPEPLAATAKAGAELVLVPNASPYERGKHAQRDALLAERSRDTGVAIAYVNTVGGQDAVVFDGASVVADGDGTVHPAAVAFSEEMLVVEYNVAARSFMPLHWIDDGDESMDALAWRAVTRGIQDYCRKNGFSKVWLGLSGGIDSALVLAMAVDALGADNVTAVSMPSRYTADLSNDLAVEQCRALGVKLETVPIEPAFQGLMQSLSAMFEGQAADVTEENLQSRSRGVILMALSNKFGGLLLTTGNKSEYAVGYATIYGDMCGGYAPLKDLYKTEVYGLSKWRNTVGGAPVIPPAVIARAPSAELRDNQTDQDSLPAYDVLDGILYRYIDQEQSREDIVGAGYAPEIVDRVLKLVRISEWKRHQAAPGPKVSRRAFGRERRYPITNGYRS
>NZ_CP014274.1|WP_062166714.1|1124386_1125271_+|outer-membrane-protein-assembly-factor-BamD
MIRRSSLLSAPVRLTALLLVLVFVATGCHRGAKKDADEGAPVEQLFEKSHKLMEGGNWSGAETSFKRLIAQYPYGPYTEQAMIESAYAQYKAGKNDDAVSSIDRFIRTYPTHRNIAYLYYLRGLANGNRDTVFLRRVWSLDPSRRDLSTPRQAYADFNIVTERYPNSRYAADARQRMIELRDIFAQHELDDALYYARRGAWVSVVGRANYLLETYPQSAFQYDAVALLGEAYTHLGNKTLADDARRVLQLNQPEHPWLAGNWPKYPWMIRKLNPFAGERSVATGQSNATMNRSK
>NZ_CP014274.1|WP_062166713.1|1123279_1124269_-|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD
MSENTSSSPRHAQVPDSAAGRRFDAVLAELFPEFSRSRLTEWIKSGAVLLDGEPVRPRDPVRGGEIATLNAVLEVEVHALPEDIPLSVLYEDEHVFVIDKPAGLVVHPGAGNPSGTLLNALLFRDPEIAKVPRAGVVHRLDKDTSGVMVVARTVQAQTALVEQLSAREVHRQYLAVVVGALVAGGTADAPIDRHARDRLKMGVREDGKEAVTHYRLRERFRAHTALECRLETGRTHQIRVHMAHLKHAIVGDPLYGGSLKLPKGATDELVAALRGFKRQALHAETLEFQHPITGETISNTAPVPADLLALMKALREDSKAFAERERGRW
>NZ_CP014274.1|WP_062166712.1|1122500_1123280_-|peptidoglycan-editing-factor-PgeF
MAQAGPLWLADWPAPPRVQAFTTLRYGAGGSQPPFDSFNLGNRTAADGDDPAQVQRNRDELQRLANLPSAAHWLRQVHSSDVVRFDAPPQAHGLEAELTADAAVTSVPGVVLAILTADCLPVVFAARDGSEVAAAHAGWGGLARGMLENTLAAMHTPAEALVAWIGPAAGPALYEVGVDVREAFLAHSSAAEQHFVATRPGHWKVDLPGLARQRLVAAGMQPAAIHGGDLCTMADPQRWFSHRRDRRSGRIATLVWMAP
>NZ_CP014274.1|WP_062166711.1|1121964_1122516_-|DUF4166-domain-containing-protein
MDGALNTPLFAQVLGAAFEQLAPQVRALHSIPLRQRWSGQGEVLRGNHWLVAPCAWLARLPPSSSVPVTVEFVTDAGGERWNRQFGAARMASRLWQRNGRLFEQLGALRFRFGLREEGGQILWRAERAWAFGVLPLPARWFAQVHCREREHAGRYEFLVDVSMPLIGRLIRYEGWLLPEPAHG
>NZ_CP014274.1|WP_062166720.1|1134240_1135971_-|type-IV-A-pilus-assembly-ATPase-PilB
MNTLTSANLVGITGIARRLVQDGALEEAVARTAMSQAADAKVPLAQWLADKKLVSAAHMAAANAMEFGMPLMDVSVFDANQGAMKLVSEELLRRHQVLPLFKRGGKLFVGTSNPTQQLDEIKFQTNLVVEPILVDEEQIRRTLDLWLASNDSLGDSLGGDDDGMGDLDIAAGDEDMGGGGDTGVDAKGDDTPVVKFVNKALVDAIRKGASDIHFEPYEDDYRVRFRIDGLLKSVAKAPVKLNQRIAARLKVMAQLDIAEKRVPQDGRIKLNLSKSKQIDFRVSTLPTLFGEKIVLRILDASAAKLGIDKLGYEPDQQKLFLDAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCSNCKRPTQLPENALLAEGYTAEQIAKGINLFEPVGCDECTEGYKGRTGIYQVMPMTDDIAAIVLQGGNAMDIADAAQKIGINDLRQSALIKAAQGTTSLAEINRVTKD
>NZ_CP014274.1|WP_062166721.1|1136805_1137219_-|pilin
MKKQQGFTLIELMIVVAIIAILAAIALPMYRDYVAKSQLAAALAEINPAKTALEVALQENGAYVPATPQDLGLQTAPTPRCSAYGASATVLSCTVLGNDIVTGAVVTLTRTPATGAWACTVTGGTGLVAKHRPGGCT
>NZ_CP014274.1|WP_062166722.1|1137755_1139012_+|type-II-secretion-system-F-family-protein
MSVTRSAIKNQPVARGTSQMLPFVWEGTDKRGIKMKGEQQAKSSNLLRAELRRQGINPTVVKPKPKPLFGAAGSKISAKEIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNARMKKMVGDIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLETVLDTVANYKENIETLKGKIKKALFYPAAVVAVALIVSSVLLVWVVPQFEEVFKSFGADLPAFTQLIVAASRFMVSWWWIILLALVGSIVGFLYAYKRSPAMQHTMDKLILKVPVIGQIMHNSAIARFARTTGVTFKAGVPLVEALGIVAGATGNSVYEKAVLRMRDDVAVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGTIVGGMVIGMYLPIFKLASVV
>NZ_CP014274.1|WP_062166723.1|1139015_1139882_+|prepilin-peptidase
MAFLDQHPGLGYPAAAGLGLLIGSFLNVVILRLPKRMEWQWKRDAREILEEPDIYEPPPPGIVVEPSHCPHCKHKLSWYENIPLFSWLFLRGKCRHCQASISIQYPIVELVTSLMVLASVWQFGFGWQGFGAIVLSCFLVALSGIDLRTQLLPDQLTLPLMWLGLIGSMDNLYMPAKPALIGAAVGYLSLWTVWWLFKQITGKEGMGHGDFKLLAALGAWCGLKGILPIILLSSLVGAIIGSIWLYSRGRDRATPIPFGPYLAIAGWLVFMWGDQMIGGYMRLAGLQQ
>NZ_CP014274.1|WP_062166724.1|1139937_1140555_+|dephospho-CoA-kinase
MSNFIVGLTGGIASGKSEVSRRFEALGITVADADIAAREVVAIGSPGLAAIAELFGAEVLQPDGSLDRAYLRQRVFANPDERRALEAITHPAIRARVRGICEAANSPYAIAAIPLLTEAGGRPTYPWLNRILVVDTPEQVQHARLLSRDNIDAALAERMIQAQASRAQRLALADDVIVNDGHTDALQLHVELLDARYRELAGAAA
>NZ_CP014274.1|WP_062166725.1|1140717_1142058_-|HAMP-domain-containing-histidine-kinase
MPETVLPEVVRRRGRYRRRLRSRIILSFVLLGFCLTTLFAFATNWARMRVENQLVEDVMNRNLDASWQSYMRSGGTDVVAPVQQMRAFLFRPDKLDGLRRDYPEWEGLQDGIHTINGEDAEGKPFSYKVGVRKTPDAWFFIAYDMGQALRGEQQLNRALFLSVIIFSLLSWVLGWWSASRVMRPVSDLASRLRAYRGGAKHPEPLAPRFPDDEVGQLAEALDDYSERLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTRPNLDEKVLQRLQRIQRAEQQCSDLIGSLLLLSRNERAQGSSNVARVAEQLLESHRAQLGGKPLELVLEGSRELVIDAPESALSVALGNLIGNAVKYSQEGRVLVRVGANAVEVIDNGPGLSEKDAASLFQRGYRGTHAGQSQGGGIGLSIVSRLCALYGWQVDIRPGKERGVVATLTFAPEQP
>NZ_CP014274.1|WP_057629745.1|1142050_1142728_-|response-regulator-transcription-factor
MRILVIEDNSDIAANLGDYLEDRGHTVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEVCRKLRNDARKQTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQEVEVRLNALSRRGKGAHTRVLEVGDLEYNLDTLEVRRQGKLLQLNPTALKILQALMEASPAVVTRQELETRVWGEELPDSDSLRVHIHGLRAVVDKPFEVPMIQTRHGIGYRISAPDA
>NZ_CP014274.1|WP_062166726.1|1143090_1143966_-|30S-ribosomal-protein-S6--L-glutamate-ligase
MKLAILSRNTKLYSTRRLVEAARSRGHTVRILDPLRCYMRITSSGFGMHYKGKALTGVDVVIPRIGASITRYGTAVLRQFEMMGARTPNPSDAILRARDKLRAHQLLAAKGIDMPVTVFGDNPDDTDDLLSMLGPPPHVVKLSEGTQGRGVILTEKLSASKGTVEALRGLYANFLVQEFIAEAQGADLRCLVVGDQVVATMRRQAQDGDFRSNLHAGGVAERVQCSKAEQQVAIRSAKALGLGIAGVDLIRSKRGPLVLEVNSTPGLEGIEGVSGDDIAGRMIEYVTSLKR
>NZ_CP014274.1|WP_062166727.1|1144423_1146244_-|autotransporter-domain-containing-esterase
MSLSLRPLRAAVAVAIALAAVPALAQSPYSKTVFFGDSLTDTGYFRPVLVKLDPNASLVGRFTTNPGWVWADYVADQYGTNASPNGNGQTGDNYAVGGARVGVDEVGALGATPSMKTQMTTYLAANGGKADANALYTVWGGANDLFAVQKAPAQAQAIIGAAVADQVGIVGALKAAGAEYVMVPNLPDIGLTPASRAGGAMGMAQGTALAKAYNDALFGGLKQAGLQVIPVDTFTILQEIVANPGTYGFTNVSNMACTSASSVTCSPLSLAAPNANNTYVFADGVHPTTAAHQILGQYAISVLEAPRLQQVLTHSAQTTGRARADQVGAHVGSRPADGLSWWGNLRGDMQRYAHADLYDGMAPAGLFGVDWTRDGLVLGGFAGYGRMDADFGNSKGDFTQDDTTLGLFAGWYGERAWVNGQVSYSWLGYDVTRKVQLGPATREHKGSPDGSNLTAAINAGYEFGHAGGFRHGPVAAVIWQKVKLDGYVESNASATAFGYGDQDLDSTVGRIGWQARFDGGTVQPYVQVTYDHEFEDGKQASAWLQTMSGAGMYKVPGLEFDRNYATAVLGARLTLWGLNSNIGLSTTTMQKSARDATVFASFGGSF
>NZ_CP014274.1|WP_062166728.1|1146388_1146589_+|sulfur-carrier-protein-ThiS
MNIHLNGELRQIEPALSLIELLAAEGLAERRVAVEVNGEIVPRSQHATHPLQDGDVVEIVHALGGG

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Crispr_ID: NZ_CP014274_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_7

1269565-1269652

Orphan

Consensus_repeat	Method
AGCGTGGTGCCGAGCCATGCTCGGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014274_7

>merge|NZ_CP014274|7|1269565-1269652|CRISPRCasFinder
AGCGTGGTGCCGAGCCATGCTCGGCAGAGTTATTCCCGGTAAAGCCCCAGCGTAAAGCCCCAGCGTAGTGCCGAGCCATGCTCGGCAG

>NZ_CP014274|7|6|1269565-1269652|CRISPRCasFinder
AGCGTGGTGCCGAGCCATGCTCGGCAG	AGTTATTCCCGGTAAAGCCCCAGCGTAAAGCCCC
AGCGTAGTGCCGAGCCATGCTCGGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_057627841.1\|1277055_1277619_-\|adenylate-kinase	unknown	unknown	gnl\|CDD\|234711
NZ_CP014274.1\|WP_156455950.1\|1258834_1259227_-\|azurin	unknown	unknown	gnl\|CDD\|259989
NZ_CP014274.1\|WP_062166812.1\|1272273_1274271_+\|bifunctional-DedA-family/phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP014274.1\|WP_057629127.1\|1268586_1269450_+\|ion-transporter	unknown	unknown	gnl\|CDD\|366146
NZ_CP014274.1\|WP_156455951.1\|1279666_1280140_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_156455762.1\|1263776_1266218_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238020
NZ_CP014274.1\|WP_062166810.1\|1270691_1271366_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062166804.1\|1256465_1257092_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
NZ_CP014274.1\|WP_156455761.1\|1260093_1264089_-\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NZ_CP014274.1\|WP_062166806.1\|1259423_1260017_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|319790
NZ_CP014274.1\|WP_062171442.1\|1275360_1276725_-\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|130153
NZ_CP014274.1\|WP_062166814.1\|1277761_1279018_+\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|237600
NZ_CP014274.1\|WP_062166809.1\|1269733_1270549_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|181349
NZ_CP014274.1\|WP_065868051.1\|1266456_1266786_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062166811.1\|1271490_1272153_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|237032
NZ_CP014274.1\|WP_062166805.1\|1257266_1258559_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|234607
NZ_CP014274.1\|WP_062166803.1\|1256204_1256396_-\|rubredoxin	unknown	unknown	gnl\|CDD\|224687
NZ_CP014274.1\|WP_062171440.1\|1267289_1268516_-\|acetylornithine-transaminase	unknown	unknown	gnl\|CDD\|179868
NZ_CP014274.1\|WP_062166816.1\|1280416_1282444_+\|sodium-translocating-pyrophosphatase	unknown	unknown	gnl\|CDD\|234827
NZ_CP014274.1\|WP_062166813.1\|1274620_1275229_-\|ATP-dependent-protease	unknown	unknown	gnl\|CDD\|225362

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_156455950.1\|1258834_1259227_-\|azurin	gnl\|CDD\|259989	cd13922, Azurin, Azurin is a redox partner for enzymes such as nitrite reductase or arsenite oxidase. Azurin is a bacterial blue copper-binding protein. It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The copper of Azurin is tetrahedrally coordinated by a cysteine, 2 histidines, and a methionine residue. The electron transfer reactions are carried out with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Azurin can function as a tumor suppressor; it forms a complex with p53 that triggers apoptosis in various human cancer cells.	3.93776e-70
NZ_CP014274.1\|WP_062166812.1\|1272273_1274271_+\|bifunctional-DedA-family/phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	4.87613e-38
NZ_CP014274.1\|WP_057629127.1\|1268586_1269450_+\|ion-transporter	gnl\|CDD\|366146	pfam00520, Ion_trans, Ion transport protein. This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.	5.68376e-31
NZ_CP014274.1\|WP_156455762.1\|1263776_1266218_-\|hypothetical-protein	gnl\|CDD\|238020	cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.	6.58712e-06
NZ_CP014274.1\|WP_062166804.1\|1256465_1257092_+\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	4.23063e-67
NZ_CP014274.1\|WP_156455761.1\|1260093_1264089_-\|autotransporter-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	6.91473e-34
NZ_CP014274.1\|WP_062166806.1\|1259423_1260017_+\|HAD-IA-family-hydrolase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.00041e-27
NZ_CP014274.1\|WP_062171442.1\|1275360_1276725_-\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	gnl\|CDD\|130153	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP014274.1\|WP_062166814.1\|1277761_1279018_+\|6-phosphofructokinase	gnl\|CDD\|237600	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase.	0
NZ_CP014274.1\|WP_062166809.1\|1269733_1270549_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|181349	PRK08278, PRK08278, SDR family oxidoreductase.	2.08658e-177
NZ_CP014274.1\|WP_062166813.1\|1274620_1275229_-\|ATP-dependent-protease	gnl\|CDD\|225362	COG2802, COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only].	6.70427e-25
NZ_CP014274.1\|WP_057627841.1\|1277055_1277619_-\|adenylate-kinase	gnl\|CDD\|234711	PRK00279, adk, adenylate kinase; Reviewed.	9.7276e-103
NZ_CP014274.1\|WP_062166811.1\|1271490_1272153_-\|serine/threonine-protein-kinase	gnl\|CDD\|237032	PRK12274, PRK12274, serine/threonine protein kinase; Provisional.	3.05605e-128
NZ_CP014274.1\|WP_062166805.1\|1257266_1258559_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NZ_CP014274.1\|WP_062171440.1\|1267289_1268516_-\|acetylornithine-transaminase	gnl\|CDD\|179868	PRK04612, argD, acetylornithine transaminase.	0
NZ_CP014274.1\|WP_062166816.1\|1280416_1282444_+\|sodium-translocating-pyrophosphatase	gnl\|CDD\|234827	PRK00733, hppA, membrane-bound proton-translocating pyrophosphatase; Validated.	0
NZ_CP014274.1\|WP_062166803.1\|1256204_1256396_-\|rubredoxin	gnl\|CDD\|224687	COG1773, COG1773, Rubredoxin [Energy production and conversion].	4.74967e-22

>NZ_CP014274.1|WP_057629127.1|1268586_1269450_+|ion-transporter
MRLFSAPQLNPASDSGWRRRWFDIIHRTDTPPSRRFDLLLVWAILASVLVVMFDSVQRIHVAWATGFYIVEWGFTLLFTAEYVLRLLVVRRPLRYAFSIWGIIDLLAILPSYISFFIPGTQSLLVVRVLRLLRVFRILKLTRYIEESGVLMAALWRSRRKILLFLSMVVTIAIIAGALMYVIEGPQYGFSNIPTSMYWAVVTMATVGFGDIVPHTTLGRFITSALILIGYSILAVPTGIYTAELAGNMLRESRHDNRGCTVCGHEGHEFKAKYCNRCGHELPEHIEH
>NZ_CP014274.1|WP_062171440.1|1267289_1268516_-|acetylornithine-transaminase
MTAVVEPLLSLSNYYLPVYRPRQLVLERGQGARLWDTQGREFIDLAAGIAVCSLGHNNPDLKAALFEQANKLWHTSNMFYSEPPLHLAQELVDASRFAKRVFLCNSGAEANEVAIKLVRKWASAQDRGPDKRFIVTFRGSFHGRTLATVTATAQPKYQEGYEPLPGGFRYVDFNDVAQLEEAMAGGDVAAVMFEPVQGEGGVMPASAEFMRRARELCDQHDALLVLDEIQVGMGRTGELFAHWHWGVTPDIVTLAKALGGGFPIGAMLAGPKVADIMGVGAHGSTFGGNPLAAAVARVALRKLASDEIKANVVRQSAALKAGLEAIGEEFGVFEQVRGMGLMLGAVLKPEYVADIGVLLDLAAEKQVLILQAGTSVLRFVPALNISDEELAEGIKRVREAIAAYMASR
>NZ_CP014274.1|WP_065868051.1|1266456_1266786_-|hypothetical-protein
MPATFTRYLLGKVSRALRLVPWAMAAALAYPAGASAAPISSGVTINFNSSGFYEGAYHGSNVFGQGDVSIKYSAGQWIQATKGAYAGVFRPCSRASSQGENGCLGVRQA
>NZ_CP014274.1|WP_156455762.1|1263776_1266218_-|hypothetical-protein
MLRTSRKPIDATEKRSSSYRRYARRLLSGGLMALLSFSALAATPLDQNFDAKVPRIMTPSGDTIDGVTYRLLSPGAGGMTLFTDVNFGIAEGGGDNGVMFNCDEFCAIQLGALDARIRSADGSKFRIVSMEVDTGLYGTSTNLTVTGYRDNTPVASDTINAGVSDASGSVTYTRMGGGYNGGTLTFNADWQYIDEIRFTGADAVVAIDNLDFEPAVIPDITPPTVTSVNSSTQNGTYKVGSPISIQVNFSENVIVAGGTPQLTLETGATDRTVNYVSGTGSSSLTFTYTVQAGDATADLDYISTTALALSGSTIRDAAGNNAILTLASPGAPNSLGNNKALVVDGVVPTVTSVNSSTANGAYKVDDVISIQVNFSEAVIVTGTPQLTLETGASDRAINYASGSGTSTLTFSYAVQAGDNSNDLDYVATNSLALGGGTIKDAAGNNAALTLPSPRATNSLGANKSLVIDGVVPSVASIVISGAPASTDSSMAFTVTFSEPVSGVSVDDFTPSATSTASGIVNSVSAESGTVYNVTVGSISGNGTLRLELKASTNIADSVGNTGVAAFTSGAVHTVAIPVVPDAPTIGTATAGESQATVTFTAPGSNGGSAITLYTATASPGGATGSCAGPAACTATITGLSNGTAYTFSVTATNSIGTGSASGASNAVTPKANQVITFANPGTKNFGTTPTLSASSSSSLPVTFSSSTTGVCMVSSAGELTFVTAGTCSIDADQAGNGFTNAAPTVIQSFTVSAIAPDAPTIGTATAGDTEAMVTFSAPTSTGGRPSAPTATPSLPIRAVPPAPAPARQSSLPA
>NZ_CP014274.1|WP_156455761.1|1260093_1264089_-|autotransporter-domain-containing-protein
MHGQLRGRADFRHRRHLQHRRRPGRQRFHQCRPHGHPKLHRQRHRPRCADHRHRHGRGHRGHGDLLRADLHRGAAISPNGYTVTANPGGATGTGSSSPVIVTGLTNGVNYTFTVTATSSAGISAASTASNAVTPAAPQTITFANPGSQTFGTTPDLRILNGGASATSGLDVSFTSSTTGVCTVTSQGVLGFVTTGTCTILADQAGNSSYLAAPQVIQSFTVNTIIPGAPTAVVATAGDTQASIAFAAPTNTGGTTISGYTVTVSPAHVASVYGVGSPIVVTGLTNGQPYTFTVTADNSAGTGSTSNASNSVTPAATQTITFSNPGAQDFGTTPTLSASSDSGLTPKLTSSTTGVCTITSGGVLTFITVGTCTINADQAGNGSYLAATQVSRSFAIDAVIPGAPTIGTAAVTGAAQVAVSFTAPVFNGGDAALSYTVTPSPAVPGGPFTGSSSPVTISGLGTGTSYTFSVTASNSVGPGPASAASNAVTPAVTQVITFANPGAQDFGTTPTLVASVDSGLPLRFVASTPAVCAVTADGLLSFTSVGTCTVTVHQDGDASHQAASLSQTFNVTAAVPATPVLGTVTVVGSGEVEVAFTPSAATGETITYVVTAQPGGVTASGTSSPIKVTGLTDGVSYTFTVSATGQAGNSTSSAPSAPVVPQVLQEVSFDAVGTQPFDKVPVLSARADSGLPLTFSSQTPVVCTVTADGQLAFVLAGDCTLVVEQAGDASHRPASASRTFRIEAVPPGVPAIQTLTRQGSGRVSVAFTPPTFSGGATIDGYRVTATPQGTAAPAIRAMSLRAAGTPGVVTATGSGSPILVQGLAEGVTYVFTVAAYNLAGEGASDSAQELLAAPTLSWIGDLQKVYGEADFELPLPQSNSAGAFTFTSSNPAVATVNGRTVTLVGEGSATLTATQAATSNHLTGAVTLTLVVSPRPDPTLDAQVSGGIQAQVDASVRFAQVQGANIRDRLRQVRSGRNANNVNFALAYAGSQSIPGLSVPVGRVAEAALPALPEGWGLWLAGTATFGKVGRNGRTGGGFDFNTGGITLGADRAVGENLLLGMAGSWGKQGTDFDGTPSKVDADQRSLAAYGLWRLGEHLFVDGLLANGQLDFDLIRWSEPANASAQASRTGDQWFGSLTLGYEHRNAAGMTLTGYGRYDGHRATLDGYREQGLGIYDLAYGRQKVDNSALAVGLEGSLAFKRERLNWRPHWSIEYRSALENRGDVAMNYLQRPQSTDYVLAMRSYNDDTLVLGAGMDLQLDSGWMFSLLLGHEQGRNAMRSNSVGLQVRFGQQGADVPKYSDEAGLQQGGVSSRPCRGSSMRCSAPSGAQPK
>NZ_CP014274.1|WP_062166806.1|1259423_1260017_+|HAD-IA-family-hydrolase
MQRPHALLLDFDGLLAEYDHRTHLSELAEVAHCTAAQVDAALREEGLELAHARGELDGPQLLAALNLRLHSRLQAEDWHRARRAATVVRRDSVTLLHHLRPGVQVAILTNNGLLTQPVIEQLLPGIPVLCSATLGVRKPDPAVYRAACTALHCEPARTLFVDHLFRNVQGARAAGLLADTAHHTQSLRKLLKRYQLR
>NZ_CP014274.1|WP_156455950.1|1258834_1259227_-|azurin
MARTCAVTIESNDRMQFSQPQIRVAADCTQVDLTLKHTGRMPATAMGHNWVLSRTPDFQPLATAGMRSTLADSYLPKNDARVIAFTPVIGGGQTTQVRFETSKLTRGGDYTFFCSFPGHWGMMKGKLVFG
>NZ_CP014274.1|WP_062166805.1|1257266_1258559_+|glutamate-1-semialdehyde-2,1-aminomutase
MNHAQSHDLFTRAQTLLPGGVNSPVRAFKSVGGEPFFVQRAGGAYLHDVDGNAYIDYVGSWGPMVVGHNHPTVREAVQQAIGNGLSFGAPCAAEVTMAETITQLVPSCEMVRMVNSGTEATLSAIRLARGATGRNKIVKFEGCYHGHGDSFLVKAGSGMLTLGVPTSPGVPAGLSELTLTLPYNDFDAATALFEQQGKEIAGLIIEPVVGNANCIPPREGYLQHLRALCTQYGALLIFDEVMTGFRVALGGAQAYYGITPDLSTFGKIIGGGMPVGAYGGRRELMSQIAPAGPIYQAGTLSGNPVAMAAGLAMLQLVQAPGFHERLTAATNTLCDGLEAAARDAGVAVTTNRVGGMFGLFFTNEKVETYAQATACDIKAFNVFFHAMLERGVFLAPSAYEAGFLSSAHDDAVIEATLVAAREAFKVVAAG
>NZ_CP014274.1|WP_062166804.1|1256465_1257092_+|thiamine-phosphate-synthase
MTQFADARGVYLITPDETDSARLLERVRPLLAGTTWLQYRNKAVDAPTRLAQATALQALCAAAGVPLIINDDAALAAQVGAAGVHLGEDDGDIAAARALLGPQAIIGASCYDQLALAQRAVAAGASYVAFGAFFPSRSKITPRRANPELLRQSAALGVPRVAIGGLTPDNSRPVVEAGAELIAVISGVFSEADPVAALDAYRRCFQHQ
>NZ_CP014274.1|WP_062166803.1|1256204_1256396_-|rubredoxin
MSDATASTLRNWMCVVCGFIYREADGLPEEGIAPGTRWEDIPDTWTCPDCGVTKDDFEMVELD
>NZ_CP014274.1|WP_062166809.1|1269733_1270549_-|NAD(P)-dependent-oxidoreductase
MSSLQGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVPNPKLPGTIHSAAEAVRAAGGQALALKCDIREEDQVNAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFLCAQACLPHLLQAPNPHILTLAPPPSLDPKWWAPHTGYTLAKMGMSFVTLGLAAEFGPQGVAVNALWPRTVIATDAVNMIPGVDVGGCRKPEIMADAAHAVLTRNAAGFSGQFLLDDEVLAEAGITDLSGYAVDPSRPLMPDLFL
>NZ_CP014274.1|WP_062166810.1|1270691_1271366_+|hypothetical-protein
MKTLLHAAPVLLALGLVACQKPEPGVQVPPPASDVTAHTTGLGEEAARIGPNAVWQGSVDACRSSTAADSCLLQAMRSGGASPAALAAASTLSAQGKPGYVTAWQNVEGIGVATLEFPFRANTNQGTWLVDANGKAIDVDEDVLDDTVRASDAFKAFSARHPDAGPFAPALAAGSQTLPDGGVRLRYSTPLRSCHACADDGKLILGYDFDSKRSFTGKQLLELR
>NZ_CP014274.1|WP_062166811.1|1271490_1272153_-|serine/threonine-protein-kinase
MTESSPATAVALKADSFGQILLMQGPQGQFVRRDLGATPLWLRLPAWWLARREARALAQLDGMEATPRLLAWDGRWLDRSYMEGAAMYQRPPHGDLAYFRAARRLLQRVHRHGIAHNDLAKEANWLVREDGSPALIDFQLAVCGNPRSRWMRLLAREDLRHLLKHKRMYCRQALTPVELRLLKRHSWVRELWFATGKPVYRFVTRRILHWEDNEGQGPKP
>NZ_CP014274.1|WP_062166812.1|1272273_1274271_+|bifunctional-DedA-family/phosphatase-PAP2-family-protein
MNSSWIDATLAWIAAHPILAGLAIFAIAFCDAVIILGAIVPALPLMIAVGVLIGMGELSGPYAVVCATLGAFAGDGLSYWVGRRWGDRLRGVWPFSRYPQLLDRGEVMFRRNAFKSILIARYVGAIRPFVPAIAGMANMRFSSYLKASGLACLSWAVLFLLPGWALGQAYDAVAAVAGRLFVVVALLGTLLGLVWAIVLYSYRWSAARMDGWLARLLAWSHRHPHFLGHWLTDVFDPKRRESVPLAMLALMLLVLGWGWFVLLMVVVGHGEPLALDLAVHRLMLALRNPLADYPMAALASLGDWQVLLPAIAAGMGYLAWRRRWMAVFHWLAALAFGLALTKLLGATVDVVRPPAASSGFGFPSVAVTMATITFGFFAVLIGRELPGRTRVWPYLLSGAVVTVIGFARIYLGAHWLSDVIGGMLFGVFWLLVLGIAYRRRFNRSFWVKPVAWLFYGVFLIAGLWYAPRNVPAKLAKFEPAAAAPTLMDASHWWQQGWRELPARRNDFDDDQRWPLDVQVAGPLPALQQQLERNGWHRQAQAGWQEALMMLDMKATPQQVPVLPATLDTNVEALLMLRPGERPDEVYALRLWPSSAHLQPGQTTVWLGSAQTLRYQRHLKLFGMWRPLRGVDPALDALKQSLDGVETQQQVQPETGLPLLMIRAKP
>NZ_CP014274.1|WP_062166813.1|1274620_1275229_-|ATP-dependent-protease
MMQSPSLALFPLHAVLLPGATLSLRVFEPRYLDLVRECGRNGSNFGVCLILEGEEVGTPATPAAWGVEAVIEDFDVGADGVLVLRLRGARRFHVEATHVRDNGQVMAEVQWCERDSDDELQPEHGLLGTLLEHILEQVGGEYAAAGPAQLDQAAWVGWRLAELLPLRETQRLQLLQENDPRERLNRLLEWIPEFDVPIEEDL
>NZ_CP014274.1|WP_062171442.1|1275360_1276725_-|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase
MSKIHILGIAGTFMGGVAALARELGHQVEGSDQAVYPPMSTQLETLGISLSQGYLPGNISADCDEVVVGNALSRGNPAVEAVLDSGRRYTSGAQWLSEQVLPGRDTLAVAGTHGKTTTTTILAYLLQATGREPGFLIGGVAEDFGVSARLGTGREFVVESDEYDTAFFDKRSKFVHYRPLVAILNNLEFDHADIFPDVAAIQRQFHHLVRTVPGRGRLIVNGEDKHLAEVLAMGCWTPVERFGFDHALEWSARLINADGSAFAVLHRGTEVARVEWSLLGRHNVLNGLAALAAAHAVGVDVASVAPALAGFHSVKRRMEVIGQAQGVTIYDDFAHHPTAIHTTLEGLRAKVGDARIVVAMEPRSNSMRLGAHSQALAPSLDIADAVVFLARPELPWDAAKVIDAVRGDAQAVADTDALLVKLGDVARAGDHVVFMSNGGFDGAPRRFLAQLQGG
>NZ_CP014274.1|WP_057627841.1|1277055_1277619_-|adenylate-kinase
MRLVLLGPPGSGKGTQATSLKEQLQVPHISTGDLLRAEVAAGTELGKQAKAVMDAGNLVSDDILLGMLESRLSQADTAKGFILDGYPRNVAQANALGELLAKLNQPLDAIVQLDVPTELLVERIAGRAQEQGRADDNPESVRQRLQVYNDSTAPVIDFYAAKGTLARVDGVGALDEVLARILAAIKR
>NZ_CP014274.1|WP_062166814.1|1277761_1279018_+|6-phosphofructokinase
MSQGTLLYAQSGGVTAVINATASAVIAEARSKKIKVLAARNGILGALREELIDTSKESAANIAALAHTPGGAFGSCRYKLKSLDADRAKYERLLEVFKAHDVRWFLYNGGNDSADTALKVSQLAKEYGYPLTCVGVPKTIDNDLAVTDTCPGFGSAAKYTAVSVREAALDVAAMAETSTRVFIYEAMGRHAGWLAAAAGLAGENPDDAPQIILLPERAYDEAVFLAKVKQVVEKVGFCVVVASEGIHTADGQFVADAGGVKDSFGHTQLGGVASYLAGKVKAKLGYKVHWTLPDYLQRSARHIASKTDWEQAQAVGKAAVQFALKGHNSVMPVIVRSADVPYRWKIEAAPLSKVANHEKKMPAGFIRKDGFGITEKARRYLQPLIRGEAPLPYGRDGLPKYVTLKNVAVAKKLPSWEG
>NZ_CP014274.1|WP_156455951.1|1279666_1280140_-|hypothetical-protein
MLPLPLWAATAKPEIERPAATAQATGAVHTVRQIPEACTRIEGRFTGTAAQPYDMQLVRTSAQCQPRAVFLDAGKVNPSEAGGWKLNEVARIPSASCSSQHAVIEVWRKPAGQQVALDGQGQSRVYLEDAKAQAAAGRLAALPAYSAKLEMQGTPCR
>NZ_CP014274.1|WP_062166816.1|1280416_1282444_+|sodium-translocating-pyrophosphatase
MLEQYGLVLSLVCAAVAIVYGIISAQWVLRQPAGNARMQEIAAAIQEGARAYLNRQYLTIALVGVVLFVLVGFFLSWYTAIGFAIGAVLSGAAGYIGMNVSVRANVRTAEAARNGMSAAMDVAFRGGAITGMLVVGLGLLGVAGYYLILQRMGLSQADNLHALVGLAFGSSLISIFARLGGGIFTKGADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMAADLFETYAVTVIATMLLGGMMMAEVGRNAVLYPLVLGGVSIIASIIGAFFVKVKAGGSIMGALYKGVIVSGVLAAIAFWPVTTQLMADSSHGATNLYICALIGLVLTGLIVWITEYYTGTQYKPVQHVAQASTTGHGTNIIAGLGVSMKSTALPVIAVCAAIWSAFHFGGLYGIAIAATAMLSMAGMIVALDAYGPITDNAGGIAEMADLPPEIRNITDPLDAVGNTTKAVTKGYAIGSAALAALVLFADYTHNLQIAHPGETFAFDLSDHTVIIGLLIGGLIPYLFGAMAMEAVGRAAGAVVEEVRRQFRDIPGIMQGTAKPQYHKAVDMLTRSAIKEMIVPSLLPVAVPVVVGLLLGPKALGGLLIGTIVTGLFVAISMTTGGGAWDNAKKYIEDGHFGGKGSEAHKAAVTGDTVGDPYKDTAGPAINPLIKIINIVALLLVPLL

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Crispr_ID: NZ_CP014274_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_8

1394770-1394877

Orphan

Consensus_repeat	Method
GTCAGCTTCGCGGCTTACGCCGCTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014274_8

>merge|NZ_CP014274|8|1394770-1394877|CRISPRCasFinder
GTCAGCTTCGCGGCTTACGCCGCTCCTACAATCCAGGCATCGTCAGCTTCGCGGCTTACGCCGCTCCTGCAATCCAGGCATCGTCAGCTTCGCGGCTTACGCCGCTCC

>NZ_CP014274|8|7|1394770-1394877|CRISPRCasFinder
GTCAGCTTCGCGGCTTACGCCGCTCC	TACAATCCAGGCATCGTCAGCTTCGCGGCTTACGCCGCTCCTGCAATCCAGGCATC
GTCAGCTTCGCGGCTTACGCCGCTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062166885.1\|1382080_1383592_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|130316
NZ_CP014274.1\|WP_062166890.1\|1391806_1392505_+\|VIT-family-protein	unknown	unknown	gnl\|CDD\|153123
NZ_CP014274.1\|WP_062166894.1\|1396568_1397216_+\|thiol:disulfide-interchange-protein-DsbA/DsbL	unknown	unknown	gnl\|CDD\|239317
NZ_CP014274.1\|WP_062166899.1\|1400574_1402521_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|183236
NZ_CP014274.1\|WP_062171456.1\|1405333_1406401_-\|DUF5009-domain-containing-protein	unknown	unknown	gnl\|CDD\|226749
NZ_CP014274.1\|WP_062166892.1\|1393443_1394418_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293806
NZ_CP014274.1\|WP_065868055.1\|1386471_1387344_-\|subclass-B3-metallo-beta-lactamase	unknown	unknown	gnl\|CDD\|293868
NZ_CP014274.1\|WP_062166893.1\|1395688_1396474_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|225418
NZ_CP014274.1\|WP_062166895.1\|1397335_1398148_+\|thiol:disulfide-interchange-protein-DsbA/DsbL	unknown	unknown	gnl\|CDD\|239317
NZ_CP014274.1\|WP_062166889.1\|1390238_1391603_-\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|178221
NZ_CP014274.1\|WP_062166901.1\|1404155_1404974_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062166896.1\|1398192_1398957_+\|endonuclease	unknown	unknown	gnl\|CDD\|226098
NZ_CP014274.1\|WP_062166888.1\|1389417_1390056_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NZ_CP014274.1\|WP_062166887.1\|1387667_1389353_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP014274.1\|WP_062166898.1\|1399981_1400392_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP014274.1\|WP_062166891.1\|1392508_1393342_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117
NZ_CP014274.1\|WP_062166886.1\|1383846_1385556_+\|ATPase	unknown	unknown	gnl\|CDD\|225519
NZ_CP014274.1\|WP_062166900.1\|1402698_1403934_+\|multifunctional-CCA-addition/repair-protein	unknown	unknown	gnl\|CDD\|182810
NZ_CP014274.1\|WP_062166897.1\|1398966_1399842_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|182525
NZ_CP014274.1\|WP_062171450.1\|1380686_1381649_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|224594

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062166885.1\|1382080_1383592_-\|alpha/beta-hydrolase	gnl\|CDD\|130316	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.	1.29562e-09
NZ_CP014274.1\|WP_062166890.1\|1391806_1392505_+\|VIT-family-protein	gnl\|CDD\|153123	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	3.35785e-93
NZ_CP014274.1\|WP_062166894.1\|1396568_1397216_+\|thiol:disulfide-interchange-protein-DsbA/DsbL	gnl\|CDD\|239317	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.	1.24638e-56
NZ_CP014274.1\|WP_062166899.1\|1400574_1402521_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	1.16645e-75
NZ_CP014274.1\|WP_062171456.1\|1405333_1406401_-\|DUF5009-domain-containing-protein	gnl\|CDD\|226749	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown].	2.45416e-51
NZ_CP014274.1\|WP_062166892.1\|1393443_1394418_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293806	cd07720, OPHC2-like_MBL-fold, Pseudomonas pseudoalcaligenes organophosphorus hydrolase C2, and related proteins; MBL-fold metallo hydrolase domain. Pseudomonas pseudoalcaligenes OPHC2 is a thermostable organophosphorus hydrolase which a broad substrate activity spectrum: it hydrolyzes various phosphotriesters, esters, and a lactone. This subgroup also includes Pseudomonas oleovorans PoOPH which exhibits high lactonase and esterase activities, and latent PTE activity. However, double mutations His250Ile/Ile263Trp switch PoOPH into an efficient and thermostable PTE. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	4.61589e-103
NZ_CP014274.1\|WP_065868055.1\|1386471_1387344_-\|subclass-B3-metallo-beta-lactamase	gnl\|CDD\|293868	cd16310, Mbl1b-like_MBL-B3, Caulobacter crescentus Mbl1b and related metallo-beta-lactamases, subclass B3; MBL-fold metallo-hydrolase domain. MBLs (class B of the Ambler beta-lactamase classification) are a diverse group of metallo-enzymes that are capable of catalyzing the hydrolysis of a wide range of beta-lactam antibiotics. MBLs have been divided into three subclasses B1, B2 and B3, based on sequence/structural relationships and substrates, with the B1 and B2 MBLs being most closely related to each other. This subgroup of Mbl1b-like MBLs belongs to the B3 subclass. Subclass B3 enzymes are most active with two zinc ions bound in the active site, and have a broad-spectrum substrate profile. These B3 enzymes have a modified Zn2/DCH site (Asp-His-His).	1.08401e-121
NZ_CP014274.1\|WP_062166893.1\|1395688_1396474_+\|c-type-cytochrome	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	7.00691e-19
NZ_CP014274.1\|WP_062166895.1\|1397335_1398148_+\|thiol:disulfide-interchange-protein-DsbA/DsbL	gnl\|CDD\|239317	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.	1.01406e-56
NZ_CP014274.1\|WP_062166889.1\|1390238_1391603_-\|glutamate--cysteine-ligase	gnl\|CDD\|178221	PLN02611, PLN02611, glutamate--cysteine ligase.	0
NZ_CP014274.1\|WP_062166896.1\|1398192_1398957_+\|endonuclease	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	7.3514e-46
NZ_CP014274.1\|WP_062166888.1\|1389417_1390056_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	4.34149e-34
NZ_CP014274.1\|WP_062166887.1\|1387667_1389353_+\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	0.00290024
NZ_CP014274.1\|WP_062166898.1\|1399981_1400392_-\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	2.47352e-32
NZ_CP014274.1\|WP_062166891.1\|1392508_1393342_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.66388e-11
NZ_CP014274.1\|WP_062166886.1\|1383846_1385556_+\|ATPase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	2.19492e-12
NZ_CP014274.1\|WP_062166900.1\|1402698_1403934_+\|multifunctional-CCA-addition/repair-protein	gnl\|CDD\|182810	PRK10885, cca, multifunctional CCA addition/repair protein.	0
NZ_CP014274.1\|WP_062166897.1\|1398966_1399842_-\|EamA-family-transporter	gnl\|CDD\|182525	PRK10532, PRK10532, threonine and homoserine efflux system; Provisional.	5.84395e-100
NZ_CP014274.1\|WP_062171450.1\|1380686_1381649_-\|serine-hydrolase	gnl\|CDD\|224594	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms].	6.02069e-37

>NZ_CP014274.1|WP_062166892.1|1393443_1394418_+|MBL-fold-metallo-hydrolase
MPIRPKHPIATALLMLALSCGAQARSPHTVQQQIAGVYHQQIGELQVTALFDGTVALGRQELVGVDPGTVTRLLDHRYVPEDAQGLQTAVNAYLVQRGEHLSLIDTGTAQCFGAGLGQVLGNLRAAGYDPAEVDDVLLTHAHPDHMCGLLDAQGKTAYPNATVWLTKADANYWLDPASEATAPQQVRMAFGMARNAVAPYAAAGKLHRFTPAERLPVGITAVDSHGHTPGHVSYLLDGGNGQKLLVWGDIVHFHAVQFTRPDAAYEADSDRTAAIASRRRLMAEASEQGWWVAGAHLPFPGLGHVRREDEAFAWVPGEFSPLKR
>NZ_CP014274.1|WP_062166891.1|1392508_1393342_+|helix-turn-helix-domain-containing-protein
MGVQADAAPTLLAQLASLVDCTQAQGYACISARREHGASSVEIPQPQLAILLQGRKQVRTAQQTLEFGPGDLFLISRRCRIDVVNIPDPNSGLYLSAIVPLCAEVLGAARALWSEALPDAGQALARLPLSEHGATLLQWRQALQHGQYTEARLALAALVVAFCRRGHGSLLAAPEPGLGDRIRDLVAAQPERDWQSRDFESHLGISGATLRRRLAGERLSVRGLVADARLAHAMQLLYTTRLPLKTVAARAGYRSLGSFNKRFSARYGLDPAAIGNS
>NZ_CP014274.1|WP_062166890.1|1391806_1392505_+|VIT-family-protein
MSRSHHREAHRSDRIGWLRAAVLGANDGIVSVAGLVVGVAASGASPSAILATGVAGTVAGAMSMAAGEYVSVMSQADAESADLALERRELHEDPHSELEELTGIYRRRGLSADLARQVAEQLTAHDALAAHARDELGITEQLRARPLQAAAASALAFIIGAALPVLTALLAAPTRVAETTTAATLVGLCITGALAARAGGAPALRGAVRVVFWGALAMAASAAIGHLFQITV
>NZ_CP014274.1|WP_062166889.1|1390238_1391603_-|glutamate--cysteine-ligase
MSSPSHVADTPISHRDQLVESIASGEKPKSQWRIGTEHEKFGFRLDDLRPPAFEGERGINALLTGLTRFGWEPVQEDGNTIALLRDGASVTLEPAGQLELSGGALLTLHDTCLETGSHLNEVAQVAGELQLGFLGMGFQPKWARADMPWMPKGRYQIMKNYMPKVGSLGLDMMTRTCTVQVNLDYASEADMVKKFRVSLALQPIATALFADSPFTEGKPNGYLSYRSHIWTDTDPDRTGMLDFVFEDGFGYERYVDYLLDVPMYFSYRAGIYHDASGQSFRDFMQGKLPALPGALPTLRDWSDHTTTAFPEVRLKKYLEMRGADSGPWSRICALPAFWVGLLYDETALNAAWDLVKDFSLAERNVLRDGVPRHAMNLPFRNGTVRDLAREALAISRDGLRRRAALNADGQDETRFLDVLQEIVDSGKTAAERKLELFHGRWNGSVDPLFAEFAY
>NZ_CP014274.1|WP_062166888.1|1389417_1390056_-|glutathione-S-transferase-family-protein
MASTSDEIVFYTNPMSRGRIVRWMLEELGQPYRTEVLEFGKSMKAPAFLAINPMGKVPTIVHRGVVVSEAAAICTYLADAFPAAGLAPALDDPLRGSYLRWLFFAAGPVEAAISAKACGGLPPPEKAGTVGYGSFEQMTDTLEQAAAGAAPWLLGDRFSAADVYVGSQVLWGQMFKTLPERDAFAAYGERLRNRPAWQRAAALDDALIPPRA
>NZ_CP014274.1|WP_062166887.1|1387667_1389353_+|hypothetical-protein
MIRRSLSPLLLSLLATAALAGCDASNKQDPAAGSVAKANASALPLFDTFGDLHRDIGSSVPLAQRYFDQGLRLAYGFNHEAAGRAFAEAARLDPSCAMCVWGQALVMGPNINLPMDPAAANDATALAARAVSLASSARPADQALIHALQKRYATPAPQDRTPLDRAYADAMAEVVTQHPADDDAATLYAEALMDLSPWAYWQNGTPAEFTQKLVAELERVLARNPRHIGAMHYYIHAMESSPEPRRAEPYADALAALAPGSGHLVHMPAHIYIRVGRYHDATLTNLAATSADKDFLAVCRGSNGVYPLGYVPHNWHFASMTTGLTGSRTLALQAARQTAERADRAAMAEAPMQFMQQFVVTPLLTQVRFGDWDAILADTSAATELPYPSAIRHFARGMAHARKGNLEQAATEADALHAIAADPAMAQISFFDINHADGVLRVADALLRGELLRAQGKHGHAITALRVAAAAEDALAYNEPADWPLPIRPYLGAALLDTGDAKGASDAFQQDLTTYPANGWSLYGLAQAQQALGQTEAAQETRRQQTQAWQWADAPLTAARY
>NZ_CP014274.1|WP_065868055.1|1386471_1387344_-|subclass-B3-metallo-beta-lactamase
MQKQGFRRGLRVFALLAAGITSASAWAGAPPEWTVAIAPFHIVDNVYYVGTEGLAAYLIVSAEGAILLDAPLASNAEQIERSIERLGVPLRDVRLLISSHAHADHVGAMAALKRDSGARYLASAGDRWALENGRNQGDNNYGVMPFAPIKVDEVVADGQKIRLGEIELTAHLTPGHSPGCTSWSMTVNDRGTPRELMFLCSLTVAGNSLIGNRSYPGIADDFRASFAKLAAMHADIVLTGHPDTADVLERQARREDGDADAFVDAGLLARLVSTSKADFEAALSEASAAE
>NZ_CP014274.1|WP_062166886.1|1383846_1385556_+|ATPase
MPILRTLSVLAVLVFAVAAWLAVLLRDATTLQLLDGEMAPASIAAAGSLPTSPPPTLDWQPIDQGVLARWRDPYWLRWQSTADTAANDDGRALRLALRAASQLYWNGQPLAGNGRVGLTAAQERPGQVDITRVLPPSAPGTVDELLVLASSHHQQFGLHSADALVAVAPAQLLYQRGLLPWLIAAFATGALAAACLYFLALQRGRPQMPGGRVLLTLCAVGIALPLTEAWRPLLGYTYPWHAPRLYALLVLHVAAAVLLPAYLAQRFNLSVRRSLRIGYLLLLLLAVIALPSFDSRSALVLLLSLLASAALLLRTQGEREERWPILALLLAGVLALLVAPGAFLDGPYFLLLAVLMGFLLLCHAAQVRALDLHNARLREERASLSLQLLQRGIQPHWLMNTLTCLQELIEQAPPRASRLVESLAEQFDRLRDSSSRRSVPLAEELALCRNHLDIVGQALDQTMTLDVDADDLQLSLPPGVLHAQVENALSHAGAVACAQNPFRLRVRRDGQRWILELRSARGTAPHRGQGTGTRYIEASLAASHPNRWQYSQGADGADWCSRIELTCAS
>NZ_CP014274.1|WP_062166885.1|1382080_1383592_-|alpha/beta-hydrolase
MQRDAATSAAASHKRGMGQLLPAAARLLALSLALACASPVLASDGPAPLVFTPYAMQTKGNGSIATEEAFLEVPRRHSEPNGPRIRLRVVRLPATGGDGHAAPVVYLAGGPGGSGFGTALGPRWPVFDRVRREADVLLLDQRGTDFSQMPPECPHEQKFDDAQPLQREAVLVALKATLAQCMAFWKDADVDMGAYTTAESADDIEYLRQALRLPRLSLWGMSYGTHLALATVRRHPDSLERVVLMGSEGPDDTIKLPLSADALLADLAVVARKDGFDDLQGSAQRVLAKLRQQPAQGSSPMHDGRKVTIGAFDAQLAIAIALGRRSTQRMLPLALREAEAGNYDLLGAIALMVREGLGGFRAMPTAMDVASGQSPQRRALAAAQAQQSLLGDALNFPFPEVADGSGLLDLGEAFRAPLRSEVPVLFISGTLDGRTPHANAQALLPGFSKGRELLLRGASHDNEMWLGNPAIADNIAGFLAGRTLHDEVLDVPLPVFIGSRAEL
>NZ_CP014274.1|WP_062171450.1|1380686_1381649_-|serine-hydrolase
MDAAISGGQAPDTTSVLVVHGGALVHEAYFNGAGRNTLHNTRSLTKSVTAMLVGAAIDRGLISGVQAPVLGFFPDRHPAHPGAFKNAIDIEDLLTMSAQWECDDNNEYSAGHEERMYVSADWTGFTLDLPERGYAPWMKRPADSPHGRAFAYCTANAFLLGAIVERASGMPLQRFAAEVLERPLGMATSVWNRSSEGVGMGGGGTEYRSRDLAKLGQLIIDEGRWDGRQVLPAAWTRAMTQVHAQTPFDADYGYQIWRFPFSVGDKPVHAWAMSGNGGNAVFVVPEKQLVVVVTRTHFNQRGMHQETQKLLQDYVLNALR
>NZ_CP014274.1|WP_062166893.1|1395688_1396474_+|c-type-cytochrome
MRHARVLAVAALVVPVIAAVAFAQSSVTPVPDNAPVQTASLEVDFSKTKPGDAKAGEAKASTCAACHGADGNSAVEIYPRLAGQSERYIAKEIALIANGQRNEGAVAAMVPFVQGLTPQDMRDIGAFFATQKSGAGVADDAVVSEAPYEGMKFFEVGQKLYRGGDSSRNIPACIACHGPTGAGNPGPAYPHIGGQHAGYVAQRLQRYQAGQTGESDATQFKIMAQISHALTGQEIQALASYIQGLHDRANDATVATTAAQP
>NZ_CP014274.1|WP_062166894.1|1396568_1397216_+|thiol:disulfide-interchange-protein-DsbA/DsbL
MKLFPRLLLMLLATAPLLAWAAPAAAPVEGQDYELIAEPGPFAPLAGKIEVVELFGYTCPHCAHFEPLLEAWVARQPADVRFTAVPAAFGGYWDSYARAFYAAEQVGVLRRSHADVFKALHEQRSLPVQNVSPDELATFYSQYGVQPQRYVEALRSPQVDEKVKNARAFAVRVRPPGTPSLIINGKYLVKGKNFDDNLRIAEALVARERSSGNRR
>NZ_CP014274.1|WP_062166895.1|1397335_1398148_+|thiol:disulfide-interchange-protein-DsbA/DsbL
MKIRFALALTALLPLMVACKAQDGTADTTASAAPAATEAAPAATPAPAADAAASSAPAAAATDATVAPPVPAQARLVGPDPVAGTDYVAIEGGQPFQPATGKVEVVEIFGYVCPACARFQPLISSWKAGLPSDVSFVYVPAAFGGTWDNYARAFYAAETLGVQEKTHDALYTAIHIEQTLKGERGSDSVQDIANFYGKYGVDPKTFADTMGSFGVAAKVNRGKQFAQRSKITGTPSLVVNGKYLVKGKGYEDMLRIADHLIARERAANAK
>NZ_CP014274.1|WP_062166896.1|1398192_1398957_+|endonuclease
MKSPTQTLRLLTANIQAGSSTRRYSDYVTRSWSHALPAGQKRSSLDAIAKLASGRDIVGLQEADPGSLRSGFTNQTHYLAERAGFNYWAHQPNRRMGGVASSANGLLSRLEPVEVQDHALPGRIGGRGLLVARYGDGDEGLTVAVAHLSLGTGSRLSQLDFISDVLADYPNAVLMGDFNCKADRPEMRVLYHKTRLQPPSCLVPTFPSWGPDRAIDHILISDTMKMLDTRAVPAAHSDHLAVEMEVEVPANSLR
>NZ_CP014274.1|WP_062166897.1|1398966_1399842_-|EamA-family-transporter
MQNSRFASLLPVLAVLGSVTSLSIGTSYAKNLFPIIGAQGTSALRVGFSALFLLLLWRPWRWHTSRADGAAILRYGLTLGLMNLLFYMALRTIPFGIAVAIEFTGPLAVAMFSSRRPIDFVWVGCALVGLVLLLPLDGGQALDPVGVMYALGAAFCWALYIIYGKRTGHLHAGHSVSLGLLAASLVVVPVGVAHAGMALLEPKILLAGFVVAVVSSAIPMSLEMMALKRLPKETFGILISMEPAVAALWALLLLHEHLSGLQWLAIGCTVLASVGSTLTARRRPAPAIAAG
>NZ_CP014274.1|WP_062166898.1|1399981_1400392_-|biopolymer-transporter-ExbD
MAFSAAGNSGRPLADINVTPLVDVMLVLLIIFIVTAPMVSVPIPVDLPQRSEKVLPRIEPPPPIELRVDAADQLYWNGEVLAMADLQARLQAQADLHVGNLPELRIDASPDAQYQVMAKVLAAANNAKMERIAFIQ
>NZ_CP014274.1|WP_062166899.1|1400574_1402521_+|transglycosylase-SLT-domain-containing-protein
MNKFLLLPLAAVAALLSASAHAQNLDAQRTAMRTAIDNAERGQFDAGAATALRNHPLYGWLEFSALRRNIDTLPTAQAQDFLKRYQGQAVAESFRSTWLPALARRQDWPTLLANWKASSDPGLRCAELNARQATGKADAQWTSDAQALWRSAGKSLPDGCDPVFAVLASRGGLPPALRWERIDAAADAQQPAVMRAAARGLPTAEQAQANDYAAFVDKPDARALNWPKNERSRRIAVDGLQKLAKPDPGAAELQLPQYAQALGLSAEQQGQVLYEIALWTVASYLPDSARRLAAVPASAYDERLHEWRTREAMARGDWPAALAAIRNMPASQRNDSRWRWFEGRLLEKTGKPAEATALYRAAASEPTFHGFLAADKLKQPYTLCPWNPGDSASAKASVARDPALVRAIELFKIERPSWAAREWADALTRFDDTQRRLAVEVASNNGWFDRAVFALKGPQEMRLYNLRFPLHHDESIRREAARNALDPAWIAAEIRAESIFNPNARSPANAMGLMQVLPATGASVAKSIGLSGYGGAASLYDSDTNIAIGTAYLRQLMDKYNGLPYVTIAAYNAGPTPTARWQSQRPDYDPDFWIETISYKETREYVARVLAFSVIYDWRLNGNALTLSDRMVGKTQGARKAFSCQQAP
>NZ_CP014274.1|WP_062166900.1|1402698_1403934_+|multifunctional-CCA-addition/repair-protein
MKTYLVGGAVRDSLLGQQPGDRDWVVVGATQAEMESLGFKAVGKDFPVFLHPDGGEEYALARTERKSGRGYRGFVVDADPSVTLEEDLQRRDFTINAIARDEETGELVDPWGGVRDIEQRVLRHVGPAFVEDPLRVLRAARFMARFAPLGFTLAPETAALMRQMAASGELDALVPERIWQELRRSLAMKQPSAFLRCLHDTGALAAILPEVDALYGVPQRAEFHPEVDTGVHQEMVSDMAAQLAPGNDLIGFAALTHDLGKALTPTDELPRHIMHEQRGLKPLAKLCERLKIPVDHRLLAEAVCREHLNVHRIDELRDATVLELIQRCDGFRRPERIAQLALACECDKRGRLGFEDSDYPQRATLQRLHAAALAINARDIATEGLQGPAIGEALKKARIAAISKARQHAAS
>NZ_CP014274.1|WP_062166901.1|1404155_1404974_-|hypothetical-protein
MMGVALLALAMNNAYAKKPEVAPGFNYEFSVGAGAKGRQAGDAELRVVRRGHTGRAIGLQIATGLLGGGAMGFGKNQLHGERIKEIPNPGTDVLQDALRTQVEQWQAQNPQRVIDQPLIVELQGSDWVLMYQELDQTDTPYELRYSTRIGLRSPSRGLLKGAESYGSFTCTPTPVVQTYPAWADGDFAGVRDVRARYVADCAQQFAQLLPQWMQVVGGDPGPAAVQVATESPAENPAENPAENLPPPVAAVEQKEDAAPQAADEAPSQLQPR
>NZ_CP014274.1|WP_062171456.1|1405333_1406401_-|DUF5009-domain-containing-protein
MNKAIRYASVDALRGITVAAMLLVNNPGSWSHVYAPLRHSEWHGCTPTDLVFPFFLVIVGVSIALGVVPRVEQGADRGALTRTVLIRAARILGLGLLLHFLAWWWLELPHYRPWGVLQRIGLCFAFAGAVAIWLKPKAQTLCLGVLLVGYAALLAAGGTLEPWLNVASRADTALFGSLLYQYDAASGHGHDPEGLISTLGALASTLLGLRAGAMLRLRPWRLLPAAALLLLAGGVWANWLPWNKNLWTPSYVLWTGGCAFAGLWLAHILIDCRQWPALGRRFGVNAITAYAGSSAMVLAMMATGSWNWLWEHLFNRWLTPLGGAQFASLAMALSFVAVWWLPMAWMDRLRIYLKI

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Crispr_ID: NZ_CP014274_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_9

1639094-1639237

Orphan

Consensus_repeat	Method
CTGTAGTGCCGAGCCATGCTCGGCAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP014274_9

>merge|NZ_CP014274|9|1639094-1639237|CRISPRCasFinder
CGGCAGTCCGGCGCAATGCCCGCCAGCAGCATCGTGCAGTGGGCGCGCACCCACCTGTAGTGCCGAGCCATGCTCGGCAGCGGCCTCCCCAGCAATGCATCAGCCTGTAGGAACGGCACTGTAGTGCCGAGCCATGCTCGGCAG

>NZ_CP014274|9|8|1639094-1639237|CRISPRCasFinder
CGGCAGTCCGGCGCAATGCCCGCCAG	CAGCATCGTGCAGTGGGCGCGCACCCAC
CTGTAGTGCCGAGCCATGCTCGGCAG	CGGCCTCCCCAGCAATGCATCAGCCTGTAGGAACGGCA
CTGTAGTGCCGAGCCATGCTCGGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062167060.1\|1632641_1633106_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378647
NZ_CP014274.1\|WP_156455781.1\|1647661_1648822_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP014274.1\|WP_156455780.1\|1645607_1645910_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237855
NZ_CP014274.1\|WP_062167078.1\|1646277_1647789_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|273816
NZ_CP014274.1\|WP_062167066.1\|1638066_1638621_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378647
NZ_CP014274.1\|WP_062167074.1\|1642267_1644628_+\|cytochrome-C-biogenesis-protein	unknown	unknown	gnl\|CDD\|226685
NZ_CP014274.1\|WP_156455782.1\|1649074_1649359_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271384
NZ_CP014274.1\|WP_062167053.1\|1629142_1629571_-\|type-II-secretion-system-major-pseudopilin-GspG	unknown	unknown	gnl\|CDD\|130771
NZ_CP014274.1\|WP_057626798.1\|1646083_1646275_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062167070.1\|1641163_1641451_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP014274.1\|WP_062167062.1\|1633102_1635022_+\|type-II-secretion-system-secretin-GspD	unknown	unknown	gnl\|CDD\|274175
NZ_CP014274.1\|WP_062167055.1\|1629578_1630784_-\|type-II-secretion-system-inner-membrane-protein-GspF	unknown	unknown	gnl\|CDD\|273980
NZ_CP014274.1\|WP_082746519.1\|1628633_1629215_-\|type-II-secretion-system-minor-pseudopilin-GspH	unknown	unknown	gnl\|CDD\|225076
NZ_CP014274.1\|WP_062167076.1\|1644627_1645218_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP014274.1\|WP_062167049.1\|1628274_1628637_-\|type-II-secretion-system-minor-pseudopilin-GspI	unknown	unknown	gnl\|CDD\|273767
NZ_CP014274.1\|WP_062167047.1\|1627663_1628278_-\|type-II-secretion-system-minor-pseudopilin-GspJ	unknown	unknown	gnl\|CDD\|130772
NZ_CP014274.1\|WP_062167068.1\|1639431_1641078_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP014274.1\|WP_062167064.1\|1635113_1638020_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|287440
NZ_CP014274.1\|WP_062167057.1\|1630812_1632321_-\|type-II-secretion-system-ATPase-GspE	unknown	unknown	gnl\|CDD\|131585
NZ_CP014274.1\|WP_062167072.1\|1641940_1642264_+\|divalent-cation-tolerance-protein-CutA	unknown	unknown	gnl\|CDD\|376987

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062167060.1\|1632641_1633106_+\|hypothetical-protein	gnl\|CDD\|378647	pfam11356, T2SSC, Type II secretion system protein C. This is the greater N-terminal region of GspC-type proteins. GspC proteins form part of the sophisticated transport mechanism of Gram-negative pathogens for injecting divers proteins into their hosts, a type-II secretion system - T2SS. The region is made up of a short N-terminal cytoplasmic domain that is followed by the single transmembrane helix, a Pro-rich linker, and the so-called homology region domain in the periplasm. This inner membrane GspC interacts with the outer membrane secretin GspD via periplasmic domains, an interaction which is critical for the effectiveness of type II secretion.	2.90192e-06
NZ_CP014274.1\|WP_156455781.1\|1647661_1648822_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.62545e-43
NZ_CP014274.1\|WP_156455780.1\|1645607_1645910_-\|hypothetical-protein	gnl\|CDD\|237855	PRK14900, valS, valyl-tRNA synthetase; Provisional.	0.00508399
NZ_CP014274.1\|WP_062167078.1\|1646277_1647789_-\|FAD-binding-protein	gnl\|CDD\|273816	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. [Energy metabolism, Electron transport].	1.44293e-40
NZ_CP014274.1\|WP_062167066.1\|1638066_1638621_+\|hypothetical-protein	gnl\|CDD\|378647	pfam11356, T2SSC, Type II secretion system protein C. This is the greater N-terminal region of GspC-type proteins. GspC proteins form part of the sophisticated transport mechanism of Gram-negative pathogens for injecting divers proteins into their hosts, a type-II secretion system - T2SS. The region is made up of a short N-terminal cytoplasmic domain that is followed by the single transmembrane helix, a Pro-rich linker, and the so-called homology region domain in the periplasm. This inner membrane GspC interacts with the outer membrane secretin GspD via periplasmic domains, an interaction which is critical for the effectiveness of type II secretion.	2.05604e-06
NZ_CP014274.1\|WP_062167074.1\|1642267_1644628_+\|cytochrome-C-biogenesis-protein	gnl\|CDD\|226685	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion].	1.26582e-153
NZ_CP014274.1\|WP_062167053.1\|1629142_1629571_-\|type-II-secretion-system-major-pseudopilin-GspG	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	1.17742e-58
NZ_CP014274.1\|WP_156455782.1\|1649074_1649359_+\|hypothetical-protein	gnl\|CDD\|271384	cd11493, SLC5sbd_NIS-like_u1, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain. Proteins belonging to the same subfamily as this uncharacterized subgroup include i) NIS, which transports I-, and other anions including ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin, pantothenic acid and lipoate, and iii) the Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1 is a high-affinity transporter while SMCT2 is a low-affinity transporter. This subgroup belongs to the solute carrier 5 (SLC5) transporter family.	0.000442956
NZ_CP014274.1\|WP_062167070.1\|1641163_1641451_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.69878e-47
NZ_CP014274.1\|WP_062167062.1\|1633102_1635022_+\|type-II-secretion-system-secretin-GspD	gnl\|CDD\|274175	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D. In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking].	5.16589e-152
NZ_CP014274.1\|WP_062167055.1\|1629578_1630784_-\|type-II-secretion-system-inner-membrane-protein-GspF	gnl\|CDD\|273980	TIGR02120, Putative_general_secretion_pathway_protein_F, type II secretion system protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher. [Protein fate, Protein and peptide secretion and trafficking].	1.0578e-148
NZ_CP014274.1\|WP_082746519.1\|1628633_1629215_-\|type-II-secretion-system-minor-pseudopilin-GspH	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	6.05976e-08
NZ_CP014274.1\|WP_062167076.1\|1644627_1645218_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	3.66704e-34
NZ_CP014274.1\|WP_062167049.1\|1628274_1628637_-\|type-II-secretion-system-minor-pseudopilin-GspI	gnl\|CDD\|273767	TIGR01707, Type_II_secretion_system_protein_I, type II secretion system protein I. This model represents GspI, one of two proteins highly conserved at their N-termini and described by pfam02501 but easily separable phylogenetically. The other is GspJ. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.	1.08327e-16
NZ_CP014274.1\|WP_062167047.1\|1627663_1628278_-\|type-II-secretion-system-minor-pseudopilin-GspJ	gnl\|CDD\|130772	TIGR01711, Type_II_secretion_system_protein_J, type II secretion system protein J. This model represents GspJ, one of two proteins highly conserved at their N-termini and described by pfam02501 but easily separable phylogenetically. The other is GspI. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.	3.65029e-39
NZ_CP014274.1\|WP_062167068.1\|1639431_1641078_-\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP014274.1\|WP_062167064.1\|1635113_1638020_+\|hypothetical-protein	gnl\|CDD\|287440	pfam10462, Peptidase_M66, Peptidase M66. This family of metallopeptidases contains StcE, a virulence factor found in Shiga toxigenic Escherichia coli organisms. StcE peptidase cleaves C1 esterase inhibitor.	4.21766e-45
NZ_CP014274.1\|WP_062167057.1\|1630812_1632321_-\|type-II-secretion-system-ATPase-GspE	gnl\|CDD\|131585	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP014274.1\|WP_062167072.1\|1641940_1642264_+\|divalent-cation-tolerance-protein-CutA	gnl\|CDD\|376987	pfam03091, CutA1, CutA1 divalent ion tolerance protein. Several gene loci with a possible involvement in cellular tolerance to copper have been identified. One such locus in eubacteria and archaebacteria, cutA, is thought to be involved in cellular tolerance to a wide variety of divalent cations other than copper. The cutA locus consists of two operons, of one and two genes. The CutA1 protein is a cytoplasmic protein, encoded by the single-gene operon and has been linked to divalent cation tolerance. It has no recognized structural motifs. This family also contains putative proteins from eukaryotes (human and Drosophila).	3.24826e-50

>NZ_CP014274.1|WP_062167066.1|1638066_1638621_+|hypothetical-protein
MKPPIPALPLLTWFAIVACCSQGNTAIAQQPDAAGQRPPLYAASASPPLRLLATFVHPQAERSLAVVQPTGSASQTLHIGQDIATGLRVHAIARDHIVLARGTQLSTLRLLGQGAARRQPARVPTATATAAAKAEPSPTSSGAALLRADSIETVRAACGNPAMMAALPDAQKAELGALGLCNPS
>NZ_CP014274.1|WP_062167064.1|1635113_1638020_+|hypothetical-protein
MNNAINLRALALALSMVMLASCDKSDAPTDKNNGGSTGGDTSTPVVPGPPTGGGDSDGNGDTGFGDDIDVGGSGGDGDGTENGGQEGGGGSGEGGNVDPPVPPVPTTPEPTPTPTDPYPEPTSARYDEVDLKGFYDIDASGAVRAVRNDLVGSLPAMIQFGQSHTVDPSGNEAKNMPRLTTEREALLLVTPDPSLKDIDALNVTVSVDGTVMGTATLLHPNSMYRSDYNNTDGRPDYNYSRRAWTMRLPWDWVKPGMSLDITDDKARSGSLAADKIDFGAPAELVVHNIRLGMLTDPPAESDAFWLLKNPEQGAADYFQTIPAARMTVAYYEPMKLGKVMVANGTIYDTASTGEGGVYAGDMRENTGKSTVSVGINLANFGATASGMAGQSQPQWFQNVVAHHAVGMYSNGKQSHGLSGGNGMLTLYSTSGNEFSHEIGHHYGLGHYPGQSGDNYFLSGHHHDSGWGYIAYRKRMRANFHWRQAKNGALNGMPIYDDTYSFAADAMAGGGFSSALSRYTHYTGYSTKIAIQPRLNKPVPSQSSVTGYLGWNATTRRMEPVTGKVPTNKELFFNSPDGNYLKPRLVGAPVFTVLGGYDPSTGKALLYPAFRGNWGNVFDLPTPIDNASTRQCWLQVSFAGGSSKRIAVAPTVLQTNSVNKLHINLAQADNPQQASLQCQEPGAAASTLATMSFPQNLAPMKAPVVVGKEAGYSALRAVEMPELDQLLVAAGGKPLVNLGGRGNLLYASWGNNPTGLSAEAKQVRDAYIAQENKATRLNRWMNRYRSDLQGSNNTAAVNALKALLDTLGLRQTPLLPAAQPMLVTNSKHCLKTEQVDGKPAVYIADASTCTGADNELWMADLRGAIHSAANPALCLAGNGGNNGAVTLTTCDRTLDAQMFDLSALPKIGRNNSCLDLSGGFLTNGRGKLITYSCTNGVNQRWNGLSANDNALLTLLSPNNLVVLRGLNIP
>NZ_CP014274.1|WP_062167062.1|1633102_1635022_+|type-II-secretion-system-secretin-GspD
MITFPARIALHRFVLLATLLLAPLAIRAAPASDAPQQWSINMKDTDIRDFIGAVANITGDTLIIDPRVTGEVSVTTQEPMSLPEVRRLFLSVMTIHGFAVIEEDTQTRVVPNDEAHVFADGRGRGPDAIETRVLTVQHNVATELLPMLRPLVPANAHLAAVPTSNSLIISDRRGNIARIEALLRQLDAPKLHGHADYEVRFASVENLQKLLQASLGATSAGAATKVLADTRTNRLLIFGPEQARQRLLELARSLDVDAPRSTTTQVIRLQHGDAKQMAQTLGAIGDSIKQEGDDKQTQTGTLIRADESLNAVVIHAKPEMLQVLTDIVRQLDIPRSQVLVEAAIVEISGDIEDALGVQWALDGGSRSNGVGGVNYNNTGLSIGTLLSSLAAGTPPTSLPSGAILGIGNSNFGALVTALSTNSKNNLLSTPTLLTLDHEPAEILVGQNVPFQTGSYTTTGDGTSNPFTTIQRQDIGVTLKVTPHINQGGTLRLEIEQEISSLAATPSGITLSDVITNKRSIKSTILANDGQVIVLGGLIQDDVTHTRASVPLLGSIPGLGRLFSSTSDTRVKRNLMVFLRPTVILGQSAASDMSERKYLDLREAPSARGKYANPLPPSPAQLFDRSQGASERGSARTPDR
>NZ_CP014274.1|WP_062167060.1|1632641_1633106_+|hypothetical-protein
MFQFDTSNLLPRTITILVTLCGVAALSWQARQLYLQMSQLPASASAAPVRMPSLSPQMLQRLFGSAPVASAADLQGAQLQGCIVAADPLQSQALIHIEGQGAVNVYTGEEFLPGVVLQQVAHDHVLFSRNGGSGRLDFPSAPSGTGELAAGVAE
>NZ_CP014274.1|WP_062167057.1|1630812_1632321_-|type-II-secretion-system-ATPase-GspE
MVETELPATLAAAGGVPVARLPFAFARRHGVLLDDADARMVCRADATMSALAEAQRIAGRPLVQHTVADEMFEQLLQQAYQQDSGSAMSMADELGESMDLASLVEGLEQVEDLLDQQDDAPIIRLINALLGEALAESASDIHIETFERRLVVRFRVDGILRDVVEPRRELAALLVSRIKVMARLDIAEKRLPQDGRISVRVGGREVDIRVSTLPAANGERVVLRLLDKQSGKLSLQHLGMRVRDVGVMQAMLCRPHGIVLVTGPTGAGKSTTLYAGLRAINNRQRNILTVEDPIEYHLDGVGQTQVNSRIEMTFARGLRAILRQDPDVLMVGEIRDNETARIAVQASLTGHLLLSTLHTNSAVGAVTRLLDMGVESFLLSSSLLGVLAQRLVRRLCPKCRVVTPASTAECAQLEMEPWQRPLLFRPVGCEHCNGQGYRGRTGIYELVEFGPELRALVHAGAGEAELLAQARRQGPSMLDDGRAKVLDGVTTLEEVLRVGRDL
>NZ_CP014274.1|WP_062167055.1|1629578_1630784_-|type-II-secretion-system-inner-membrane-protein-GspF
MAAFEYLALSADGRRHKGVLEADSARQARQQLRERNLAPVQVDAAAARDGGTTATGGGRIGSSELALLTRQLATLVQAALPVEEALRAVAAQTSKPRIRATLLAVRGRILEGHGLAAALAAYPRAFPTIYRSMVAAGERGHLGVVLEQLADYTEQRQQSRQRIQLALLYPLILLVVASLIVGFLLGYVVPDVIDVFVDSGQALPWLTRALVATSNAVTQWGPWLLPLLVISAVLLWRALQQPANRLRWDTALLKLPLFGLLLRDLDSARFASTLAILARSGVPLVEALRIAAQVVGNQCIKAGLLQSELVVREGGSLTRALEQHTPLPPMLLHMVAAGEKSGELDAMLARAARNQETDLAARIALLVGLFEPFMLVLMGVVVLLIVLAILLPIMSLNQLVG
>NZ_CP014274.1|WP_062167053.1|1629142_1629571_-|type-II-secretion-system-major-pseudopilin-GspG
MSAIARRQGGFTLIEIMVVVVIIGILAALVVPKVMGRPDQAKVTVARGDLKAIASALEMYRLDNRSYPDTQQGLEALVQRPPTGADNWNPEGYLARMPVDPWGNPYLYLAPGSKGAYDLWSHGADGREGGQGLDADLDSRDL
>NZ_CP014274.1|WP_082746519.1|1628633_1629215_-|type-II-secretion-system-minor-pseudopilin-GspH
MEPWRRWPRRRAGTGRGPGQPGPLTVVRARGFTLVEVLVVVVIVGVLAAAVELVATARGDGYALREETERMAAVVRLLADEAVLDNREYGIRLGMHGYEMRAYDNRAGRWIVQPGWAPRQLPQNLEVTLLLEGAPVALSARPDADAAPQIVLSSSAQWTPFSASIKDTSRHGLVYRIDSDGMSELQVQQVSAP
>NZ_CP014274.1|WP_062167049.1|1628274_1628637_-|type-II-secretion-system-minor-pseudopilin-GspI
MKQTRGFTLLEVMVALAILAVVAAMVHATLQRHVRNARALENRALAGWLADTTLAELQLQGVAAPGISEDTVEQGARRWKVERDIQATAEPQLRLVRIRVSDAAGEDGGVSLSGFVGVSR
>NZ_CP014274.1|WP_062167047.1|1627663_1628278_-|type-II-secretion-system-minor-pseudopilin-GspJ
MKRSAIAGFTLLELLVAVAIFALVGIASHRLLLSAVRVDAQARQQELQLRQLVRAMSSLERDVEQALERPVLDADGNEEPAFWSDPDGQGLQWTRAGWSNPLAAPRAQLQRVRWRHEGTVLAREYWPVLDRADAAAAQHQVALQDVSAVQWRYLDRQGVWRAQWQGDGAQPLPRALELRIEHTRFGVLRRVLLLPDGLPAGRSS
>NZ_CP014274.1|WP_062167068.1|1639431_1641078_-|chaperonin-GroEL
MAAKDIRFGEDARSRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASRTNDDAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDKAVIAAVAELKNISKPTADDKAIAQVGTISANSDESIGNIIAEAMKKVGKEGVITVEEGSGLENELDVVEGMQFDRGYLSPYFINNQQSQTADLDDPFILLHDKKISNVRDLLPVLEGVAKAGKPLLIIAEDIEGEALATLVVNTIRGIVKVVAVKAPGFGDRRKAMLEDMAVLTGGTVISEEVGLSLEKATIKDLGRAKKVQVSKENTTVIDGAGDTAAIESRVKQIKTQIEETSSDYDREKLQERVAKLAGGVAVIKVGASTEIEMKEKKDRVDDALHATRAAVEEGVVPGGGVALVRAVTALAGLKGNNEDQNHGIQIALRAMEAPLREIVANAGEEPSVIVNRVKEGTGSFGYNAASGEFGDMLEFGILDPTKVTRSALQNAASIAGLMITTEAMVAEAPKKDEPAMGAGGMGGMGGMGGMDF
>NZ_CP014274.1|WP_062167070.1|1641163_1641451_-|co-chaperone-GroES
MSIKPLHDRVVVKPIEADEVSAGGILIPDSAKEKSTKGEVVAVGPGKPLDNGSVRAPSLKVGDKVIYGQYAGSSYKAEGVEYKVLREDDVLAVIG
>NZ_CP014274.1|WP_062167072.1|1641940_1642264_+|divalent-cation-tolerance-protein-CutA
MDVRLVFCTCPDSKSAQALAHHLVGQRLAACVNLLPAMRSVYRWQGQIEQAEEIQLVIKTCVDRLDALSAAIRLHHPYELPEIVAISPSAGLPAYLDWIRAQTREET
>NZ_CP014274.1|WP_062167074.1|1642267_1644628_+|cytochrome-C-biogenesis-protein
MMLLRQIAAFCLLSLAALPALAISEKDLLPVDQAFALRVEASSRDRIELRWDIAPGYYLYHHRTSAKAGPGFTAGALQMPQGEKKHDEFFGDVETYHRQLRSVLPGTADAGATSVTLEVRYQGCADAGVCYPPQKRTIEVKLPAAGGSAPATVAAAPAAAPLFNPLAGNAGGGLNLPGTAAVQGLPLPSEKAFGFEAIVDNGNRLLLRFSPAPGYYLYRDRTSLALEGADGVRAGRPQWPAGKPYRDEHFGNVVVYFDQVDVPLPLRRDKPDATPATLVVTFQGCQTDGICYPPMTRRVRLSLPAGKVSQKDKEELAVAPLVIPPLAAGKKGEMTPMPLIDPANPPAPQPLVVRPAAEAASLAEAAPDASADNTRRSQPPAETAGNGSLLWVLLLALAGGLILNLMPCVLPVLSLKVLGVAQSGESRQHARNHALWYTAGVLVAFTVIGALVLALRAAGQAAGWGFQLQHPWFIAALVYLMFVVGLSLSGVFTLGGNGGQLGQKLASRSGPSGDFFTGVLACVVASPCIAPFMGPALAYAFTAPPALAMLVFLALGLGLALPFLLIGFVPALAKRLPKPGAWMETFKHVMAFPMYLTAIWLLWVLGKQRGIDAMGLMLAGMALLALGLWWFERSRWHSRTLGMVIGAVIALLALVPVWGVTRLPPPAAAVASEGTVAYSPQMLDRLRADNRVVFVNMTADWCVTCKANERNVLDRDKFRDTLKRVNAVYMRGDWTNVDPQISAFLDQHKAVGVPLYVVYGPGTPPRVLPTVLTQSIAEEALLRAAR
>NZ_CP014274.1|WP_062167076.1|1644627_1645218_+|TlpA-family-protein-disulfide-reductase
MRRAVWWVAGIAAAAGLSAGAWLSRPTPPPLASMSAPAKPLKSATPVRGVQIGELMPAFTLPDLDGMPVQFPDRFKGKPLLINVWASWCAPCIEEMPELARFAARHADAGPQVVGLALDTPEAVLDFLGNVPVYYPIVIETPGPNDASVKLGNSQGLLPYSVLVDAQGRVLKQKLGPFKAGEIDAWVADVDSPAAE
>NZ_CP014274.1|WP_156455780.1|1645607_1645910_-|hypothetical-protein
MQFFLQAALQEPGARAPSSAPSGHLLPQAGEGIAKQSKAKQSKAKPSQAKQSQAKPSKAKQSQAKPSKAKQSKAKPSKAKQSQAKPSKAKQNRAKPSKTE
>NZ_CP014274.1|WP_057626798.1|1646083_1646275_-|hypothetical-protein
MKVATPAMKLDVRINDVKAEDGLLVMDGVAGMLPCKTSLTPAEFRQMMKLALRPSVLALLFKK
>NZ_CP014274.1|WP_062167078.1|1646277_1647789_-|FAD-binding-protein
MASRNAVKQWDQQYDLVIAGFGLAAMCAAIEAHDLDPNLSILILEKANEAETGGNSRVAGQSLLITKNAKVLAEYQRKMSVANPIPEDMLVPWSEAMEALEPWIQERAAQAGAQFIHGTGFSERDAVLEFPEFGAREAVHCTATILPIPSGVYLAFRENIRLRPRIQIAYESPLKDLVQDPDTLEVFGVIAEQNGQRVAIRANKGVVMATGGFEANLDMQRNYFGLANPAPLGTPHNTGDGIKILQKAGADLWHMRNQGQSGGIWPGFKPEGFVNGFLRNFFWQSFSWIEVDANTERFYNETAELQLTHYKEKKHGHWVDTPHYRAQPVHMIFDAITCQYNKLVVEVMSWNPVVRGYKWSDDNSVEVEKGWIQKADTLEELAVKINRDPAKLRAEVEHYNAACAAKNDADFGRNPDTLFPIAQAPFYGMRVDPVIVCTGGGARRNIKSEVLDHDGKHIPRLYEAGEMGSMFSDLYQNGSYLTEAMISGRAAGREIVGLGNWEG
>NZ_CP014274.1|WP_156455781.1|1647661_1648822_+|LysR-family-transcriptional-regulator
MRMDRFGSRSCASMAAHMAARPKPAMTRSYCWSHCLTALRLAMVPLPGDCDQPTISAPPRQPPTNSRTIHNHRLLPRAAMDLRQLRYFLSVVEHGSFTRAAAATGRTQQALSKGIQALEQQLGARLFERGSREARLTDVGRLLMEHAQPAHDAVRRFEDRLQELQTGAEGQVRIGTGPSTAGSLVAPAVLALRRHWPKIGIHVSGGILPELLPNLLARELDAVVTLHTFGDGDPDPRIKSEVLMHDEYRVLASVRHPLARQRDISPAQLLEQAWIFGRRLGAVEAAFRQRFHEAGLEPPLNTMESGSPEFMRAMIRDGGYLTLLPSRLAQAELLAGHWVKLDAPGFAWQRPVMVYTRDGEPQSAPLARFLQALRNAAELARTREVE
>NZ_CP014274.1|WP_156455782.1|1649074_1649359_+|hypothetical-protein
MEQDVEADRITNEVFRKYRILGRGRPPVISVALLMAAYPISLMLGFNSFVAYLGVAITLIAAFIVIYVYFGHRAQREISEILVKRAMDRLKGGR

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Crispr_ID: NZ_CP014274_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_10

2165381-2165470

Orphan

Consensus_repeat	Method
GGTGCGCTTCGCTTACCCGGGCTACCTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014274_10

>merge|NZ_CP014274|10|2165381-2165470|CRISPRCasFinder
GGTGCGCTTCGCTTACCCGGGCTACCTTGGAACGCCAAGTCCTCCACTATCCTCACCCCAGGTGCGCTGCGCTTACCCGGGCTACCTTGG

>NZ_CP014274|10|9|2165381-2165470|CRISPRCasFinder
GGTGCGCTTCGCTTACCCGGGCTACCTTGG	AACGCCAAGTCCTCCACTATCCTCACCCCA
GGTGCGCTGCGCTTACCCGGGCTACCTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062167710.1\|2170147_2170447_-\|DUF2388-domain-containing-protein	unknown	unknown	gnl\|CDD\|370532
NZ_CP014274.1\|WP_062167690.1\|2155221_2155662_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062167694.1\|2157811_2158318_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062167701.1\|2162720_2165273_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_CP014274.1\|WP_062167693.1\|2157029_2157761_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NZ_CP014274.1\|WP_057628650.1\|2178421_2179663_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NZ_CP014274.1\|WP_057628640.1\|2160636_2160885_-\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|377199
NZ_CP014274.1\|WP_062167691.1\|2155661_2156792_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP014274.1\|WP_062167713.1\|2175699_2176767_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|182539
NZ_CP014274.1\|WP_062167699.1\|2161010_2161799_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235664
NZ_CP014274.1\|WP_062167712.1\|2174977_2175700_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP014274.1\|WP_062167696.1\|2158521_2158782_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062167708.1\|2168270_2170148_-\|DUF4105-domain-containing-protein	unknown	unknown	gnl\|CDD\|379156
NZ_CP014274.1\|WP_062167706.1\|2167146_2168274_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|237425
NZ_CP014274.1\|WP_062167703.1\|2165573_2166344_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187629
NZ_CP014274.1\|WP_062167711.1\|2173678_2174827_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|380145
NZ_CP014274.1\|WP_062167700.1\|2161830_2162724_+\|hydroxymethylglutaryl-CoA-lyase	unknown	unknown	gnl\|CDD\|163676
NZ_CP014274.1\|WP_062167698.1\|2158783_2160640_-\|ferrous-iron-transporter-B	unknown	unknown	gnl\|CDD\|223447
NZ_CP014274.1\|WP_062167704.1\|2166402_2166969_+\|elongation-factor-P-like-protein-YeiP	unknown	unknown	gnl\|CDD\|179863
NZ_CP014274.1\|WP_062167714.1\|2176830_2178219_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062167710.1\|2170147_2170447_-\|DUF2388-domain-containing-protein	gnl\|CDD\|370532	pfam09498, DUF2388, Protein of unknown function (DUF2388). This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1 and in Pseudomonas putida (strain KT2440), four in Pseudomonas syringae DC3000, and single members in several other Proteobacteria. The function is unknown.	5.68118e-17
NZ_CP014274.1\|WP_062167701.1\|2162720_2165273_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	2.17678e-101
NZ_CP014274.1\|WP_062167693.1\|2157029_2157761_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	6.04563e-93
NZ_CP014274.1\|WP_057628650.1\|2178421_2179663_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NZ_CP014274.1\|WP_057628640.1\|2160636_2160885_-\|ferrous-iron-transport-protein-A	gnl\|CDD\|377199	pfam04023, FeoA, FeoA domain. This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese.	1.6743e-18
NZ_CP014274.1\|WP_062167691.1\|2155661_2156792_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP014274.1\|WP_062167713.1\|2175699_2176767_+\|HAMP-domain-containing-protein	gnl\|CDD\|182539	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS.	2.63638e-54
NZ_CP014274.1\|WP_062167699.1\|2161010_2161799_+\|enoyl-CoA-hydratase	gnl\|CDD\|235664	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.	2.9929e-104
NZ_CP014274.1\|WP_062167712.1\|2174977_2175700_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.68744e-72
NZ_CP014274.1\|WP_062167704.1\|2166402_2166969_+\|elongation-factor-P-like-protein-YeiP	gnl\|CDD\|179863	PRK04542, PRK04542, elongation factor P; Provisional.	2.93515e-115
NZ_CP014274.1\|WP_062167706.1\|2167146_2168274_-\|PAS-domain-containing-protein	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	6.17789e-64
NZ_CP014274.1\|WP_062167703.1\|2165573_2166344_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187629	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs. HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.37669e-113
NZ_CP014274.1\|WP_062167711.1\|2173678_2174827_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|380145	NF000247, MexA, MexA family multidrug efflux RND transporter periplasmic adaptor subunit.	3.70308e-73
NZ_CP014274.1\|WP_062167700.1\|2161830_2162724_+\|hydroxymethylglutaryl-CoA-lyase	gnl\|CDD\|163676	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".	1.30265e-172
NZ_CP014274.1\|WP_062167698.1\|2158783_2160640_-\|ferrous-iron-transporter-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NZ_CP014274.1\|WP_062167708.1\|2168270_2170148_-\|DUF4105-domain-containing-protein	gnl\|CDD\|379156	pfam13387, DUF4105, Domain of unknown function (DUF4105). This is a family of uncharacterized bacterial proteins. There is a highly conserved histidine residue and a well-conserved NCT motif.	3.73327e-24
NZ_CP014274.1\|WP_062167714.1\|2176830_2178219_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	4.06345e-126

>NZ_CP014274.1|WP_062167701.1|2162720_2165273_+|EAL-domain-containing-protein
MTVSGQQAAPDDGAHRAAHVDALAGLETALQQPLPLALQQALLAAHDALAEAMVERRAAQRRYAALFDAVPDPVSILSATGVVLDVNSAGVRAYGRTREEIVGQPIELLNPDLPADHLEPVWETLNRGETYVVEVTNMRGNGSRFPVEVHSAAFEHDGEHCIVAVARDLSRRWQAETRYRLLLESIDKGVMLFDRHLGIISANPAAHRIFNLGSSAPAKVPLHNDEWISVDEHGRRLRPEQWPVTRAFADGRSIPSTIIGLYHRPNGRMIWISITTVPVFSAGCDLPDHVFSLFSDITELKRDHALFDRAQSLAHIGGWEWDRGQQHLYLTGEAQRILGQQVAPTDLEQLLACLNSLSRQQLREAMERVIEQRTGFELELQGQRASGHSFWIRMIGEVELGDLASTRIAGTLQDITEPKHAEQTLKNQARTDPLTGIMNRDAALTDLEARLSNPSHSGVAVLYIDLDRFKTVNDVLGHNAGDLLLIEATRRIADAIGTEGLLARFGGDEFVVTCDARDLPGRPEQLAEAITRAFIPPFQFGKDEFPVTTSIGIARAPQDGQRPQQLIQNADLAMYECKRRDRNGWQVFSPELARRQRDRLQIERRLRKALDRDEFRLVYQPQVDLRSGQTIACEALIRWRNRQLGELRPDIFISHAENTGDIVRIGEWVLHQACRQIREWHNEGLGMMRVAINVSYRQFSGDRLARQVREVLDHYHLPGSALELEFTERVLIEDAPATLRTFAELRAMGVVLTIDDFGEGYSALNYLRTLPIHGLKLSQLFISGVPDNPSDVAVCEAVCGIARSLGLGLVAEGIESEAQRQFLLGLGVPVGQGFLFAPGLSPTDFSRQLA
>NZ_CP014274.1|WP_062167700.1|2161830_2162724_+|hydroxymethylglutaryl-CoA-lyase
MNDFVRIVEVGPRDGLQNEKQQVATADKIELIDRLTATGLRSIEATSFVSPKWVPQLADAAEVFAGIHRKPGVSYPVLVPNEQGYERALAVGATEVAVFTAASEQFNRTNTNAGIEESLQRFEPILARASKDGVRVRGYVSTVLGCPYQGEVPLADVVRVATRLHAMGCYEISLGDTIGVGTPHKARAMLQAVAAELPMAALAVHFHDTYGQALANIATCLEEGVRVVDSAVAGTGGCPYARGASGNVASEDVIYMLHGMGMSTGVDLPALAATGNWLAERLGRQTGSKTGRALTVS
>NZ_CP014274.1|WP_062167699.1|2161010_2161799_+|enoyl-CoA-hydratase
MSDALLVQHQGAVATLSMNRPDLHNAFDAALIAALTETLAALGADPAVRAVVLAGTGPSFSAGADLQWMRAMASASQEENRIDSLALARLMRTLDELPKPTIARVHGASFGGGVGLVACCDIAIAAEEARFGLTESRLGLLPAVISPYVIAAIGPRQARRWFATGEHFDAATAQQMGLVHQVVAADALDAAVQAQLKLLGKAGPVASASAKVLVREVHAAVGDRDGLDRANAGLIAALRASDEGREGLSAFLEKRPPRWAAH
>NZ_CP014274.1|WP_057628640.1|2160636_2160885_-|ferrous-iron-transport-protein-A
MTLSDLPLHASARVESVQDLHANDAIARRLRELGFVNGEEVRLVARGPVGGEPLLYQVGFTRFALRRSEAARVQVSAEGAQS
>NZ_CP014274.1|WP_062167698.1|2158783_2160640_-|ferrous-iron-transporter-B
MSTAVARLALVGNPNSGKTALFNQLTGSRQKVANYSGVTVERKEGRMRGPSGQEYAVLDLPGAYSLQPASLDEAITRDLCRGFYPGEAAPDALICVIDATNLRLHLRFALEVRELGRPMVVALNMVDAARKRGIEIDVPALEKALGVPVVETVAVRHNGARALVERIDALVPQLDAMPVHPVEPGADYHVQVRDILASAVRMPAPTAKVDDALDRWLLHPVYGLMTLAVVMFLIFQAVYAWATPLMDGIEAGFAWLGQFAAANLPEGPLSSLLVDGIIAGVGGVLVFLPQILILFAFILALEESGYLPRAAFLLDRMMAAAGLSGRSFIPLLSSFACAVPGIMSTRSIQDPRDRLATILVAPLMTCSARLPVYALLIGAFIPAKTVWGVFNQQGLVLFALYVAGILSALVMSWTMKKFRRDKSEHPLMLELPSYRLPNPRDLLVGLYERAMIFLKRVGGIILSLTILLWFLLSYPGAPENATMPAIDYSFAGQIGHAMAVIFAPLGFNWQICIALIPGMGAREVAVSSLATIYALSAADDDAAIQALTPVISDGWTLATGLSLMVWFIYAPMCISTLATIKRETNSWKQMAFATVYLFGAAYLAAFVTYQVAVALGAG
>NZ_CP014274.1|WP_062167696.1|2158521_2158782_-|hypothetical-protein
MDKSLLLQLQYLIIAVAVLVSAWVVLKKQFPGVLRKLRGVLALWLVRPQRSPRLQAWGRRLAPPAASSGGACGGCSSCGPSEPKQH
>NZ_CP014274.1|WP_062167694.1|2157811_2158318_-|hypothetical-protein
MKSFIGIVALVVVLAVCASVYLRGGNKINQDQVRALYQRTDLAIAASDDKPLCEMLSEDYVQTTATKTESAQAEESHDRAQSCAALAQSMQQLRQLREMFGGRMPLRYEQTVGDIRIASDGRSAEVEVSAIVEMAGVRMVSRGRDTVERRRWRTYLTSSRAVTHVGRM
>NZ_CP014274.1|WP_062167693.1|2157029_2157761_-|4-hydroxy-tetrahydrodipicolinate-reductase
MNTTPTRLLIHGASGRMGQALLRLAAEDSSLQVVAAVVRKPPIQRVIDGIPHFAASELAGAPVFDVAIDFSLPEGFDPILALCAERGVGLVSGTTGISDQQQAALAAAAARIPLVWATNFSLGVAVLAELVERAAAALPGWDCDIVESHHVHKKDAPSGTALTLGESALHGGAEPRYASLRAGDIIGEHFVQFTGLGERVELVHRATNRDIFARGALHAAKQLRQRSPGQYRVRDLLGNVTQA
>NZ_CP014274.1|WP_062167691.1|2155661_2156792_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MTQAAILVLEDGTVFEGESVGAPGLSVGEVVFNTAMTGYQEMLTDPSYARQMITLTYPHIGNTGMNDQDNEAAKVWASGLIVRDVPRRPSSWRNQVSLQDWLIQRGVVAISGIDTRKLTRILRERGAQNGALMAGPGIDVEKALEAARKFPGLKGMDLAKVVSTDKPYSWADGQLDLDSNEFARAEPKFKVVAYDFGVKTNILRMLAERGCELTVVPAQTPAAEVLAMNPDGVFLSNGPGDPEPCDYAISAIKTFVEKKVPTFGICLGHQLLGLAAGAKTMKMGHGHHGANHPVQDIDDGRVMITSQNHGFAIDESVLPANVRVTHRSLFDQTIQGIALTDAPAFSFQGHPEASPGPRDVAPLFDRFITMMEKAQA
>NZ_CP014274.1|WP_062167690.1|2155221_2155662_-|hypothetical-protein
MPALAAASRFRRWQWPVMVALVLAAYPSFVLANVYWKFFQADLPGGRNGPADAYRHSLASAIVAFTLSPRCVDWVTAVMEDDGRGNASRAMDAHNNRIGARLGAAAPSWAAMQRDVRAAVEHGAVNAASTDQITWLAPMAWQERIY
>NZ_CP014274.1|WP_062167703.1|2165573_2166344_+|SDR-family-NAD(P)-dependent-oxidoreductase
MQLSSVRAVITGGVSGLGLGVAQFLVANGGKVALFDLNDEKGAAAVAELGAGNARYFTTNVTDEAGVAANLAAAKDFLGGLNVVMNCAGILGAGRVLGRESAMPLANFQSTVMVNLVGSFNVAKAGAELMQHNEANADGERGVIINTASVAAYEGQIGQAAYSASKGGVVGMTLPMARELSRFGIRVLTIAPGVFWTPMVDGMPQNVQESLAASIPFPSRLGQPADFASLVGHIIGNTYLNGETIRLDGAVRLAPK
>NZ_CP014274.1|WP_062167704.1|2166402_2166969_+|elongation-factor-P-like-protein-YeiP
MKANDIKKGNVVEYNNGVYQIRDIERSSPQGRGGNVRFRFIMYSVPGGNKLDASFDADDNLPEVELLRRQSTFSYMDGDAFVFMDDEDYTPYTLDADVIGDDAGYITEGLTGIFVQVIDDQPVAIQLPQHVTLEVVETPPELKGGTATKRPKPAKLSTGLEIMVPEYIVNGERILVNTTTGEFGGRAD
>NZ_CP014274.1|WP_062167706.1|2167146_2168274_-|PAS-domain-containing-protein
MSSTQQQQTADAAALAEDVLKLQCCAILQLDPDGRILSGNAGVAAVLGYVGQEILTQPFSVLFSAADAQRGAAEQAVARALEQGMEQLSLAMVRRDGVRFRASVMMERVRDQAGPRVLVLIRDTTEIFQTQKRVREAQEIALRAQRLDAVGKLTLGLSHDFNNLLSVIGNSLDMLSLRRSGDESVRRILDVAHRAVGRGTQLTRQMLAFGRGQTLVPQLSQVDELINASLELYRRVCGDTIRLEVDLAAGLPPISVDVGQLEAALLNLLSNSRDAMHGVGKVVLYTRLETIVVPSGGGERGQFVSICVGDSGPGIQAEIQENVFEPFFTTKSVGDGSGLGLSQVYGFAAQSGGTAIIGTSPLGGAAVALYFPVAG
>NZ_CP014274.1|WP_062167708.1|2168270_2170148_-|DUF4105-domain-containing-protein
MRLRRLPPARWLALLLLLSVVAPLQAALRIQVQAHTPALDAAQLQASEHLIEDVLARVPAAVAEKSSLVLQLRWREDLPAYVQGRARGRQLGLDRRLLAPLLAGDQASAAAPAWQAARAALVHELAHALDRGPEGGWSAQPRFLDLAGWQRRPLLPWRGENAFTLRSPDRYELQSPAEFFAVNLEHYLLDADYACRRPLLHAWFVQNLGAPAQLDAAQCPPALPFMQAGEQEGLAELTALDPERVYEVDYLLAEGNEKLMSRWGHSMLRLVICAPGRAPGPACRMDLRHHLVLSFRAFVGDVQISSWRGLTGAYPSRLFVLPLSQVVEEYTKVELRGVSSTPLRLQREEIAGLLQQAARLHWDYDGRYYFISNNCAVETGKLLGDGAPRLGAARLLSITPTGLLQTLRAKALADPPRERAAALRGGYYFESAAAHYNLVFDVARKALPLPADNVGQWLALPPAQRRLWMQQADEQVLAAMLLLEQAARRQAEVAAGDVLKRKLLAADPAQPEHADFHALMDRAGGLLTPGSLLDDSPGYGIPDAGEQTRLRAANAAGAGQAQRQWQALRAAALAALPETQRGQLADIEANLLYLRERLRLGYGTQPREALTLQHRRLVQFSGEHG
>NZ_CP014274.1|WP_062167710.1|2170147_2170447_-|DUF2388-domain-containing-protein
MIRSILFCALIALPLSAFASSFAGTSAGSASGASSNSSGSSSGDDKVLLDAREDAAGFVASNGAIRGAWLEAALIQLREHDAAARDASDMALARKILAL
>NZ_CP014274.1|WP_062167711.1|2173678_2174827_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MTIRRITTALCVALVVAMTACSSPETPPEAVPKVSVLTVAAQRVQRDDELQGRVSALRTAQIRAQVGGIVRKRLFEQGAEVTAGQALFQIDPAAFRADVDSALAALQRSEAALSRSRVQAQRLQALADAQAVSQQHRDDATFEYEQARAAVAEARAILARRQLDLRYATVSAPIDGRIDQAMVTEGALVGAADSEPMALVQQIDQVYVDVRQPASQLPQVRQGVGDGGALPVAIIGANGQLHEQAGQLLFSGINVDARTGDVVLRVLVDNPNRELLPGMFVRARVPRGAASQAPLLPQQAVLRSAGGQAYAWVVGEDGKAVIRTLEIDGSVDRQWIVRSGLKAGERVVVEGQERLQEGRLVETSPWQPVPVQGKAAVASSNN
>NZ_CP014274.1|WP_062167712.1|2174977_2175700_+|response-regulator-transcription-factor
MMAQWDRSPDALVLIVEDETEIADIIAAYLEREQLRVVRAADGRSALELHRSARPDLVLLDVQLPGIDGWGVLSQLRQSSDTPIIMLTALDQDLDKLTALRMGADDYVVKPFNPAEVAARVRAVLRRTLRSAPRQAAASLRAGPLLIDPQTHSVHVEGEGYSHELLLTLTEFKLLHCMALAPTRIFSRGELMHQCLPESEALERTVDSHVSKLRRKLDDVGVANMPASVRGVGYRLAADR
>NZ_CP014274.1|WP_062167713.1|2175699_2176767_+|HAMP-domain-containing-protein
MRRPGLNRHITGSMSLMVLSVIVMTILSSCLLWAVLVEFFPASALEQKGWLPTGPELVWMASVTVVGLALALATSIRLTRRIVSPLNTLVESVRALTDGDLGVRASASDDALDEVALLVEDFNTMAARLQHMDRERTLWHVAIAHELRTPLTILRGRLQGLADGVFQPDEVQFRSLLAQVEGLSRLIEDLRVLGLAGNGRLDVRRARTDVVQEVHSVMTMVDPAFRNAGSVLELETHRDEHLAYCDPTRLRQALLALLENARRYASPGRVRISIQDGKDHVQLAVEDNGPGIDAELQPHVFDPFMRGESSRSRQGGGSGLGLAVVKAITDAHGGRVSCRSGAEGGSRFVLELPRE
>NZ_CP014274.1|WP_062167714.1|2176830_2178219_-|FAD-binding-oxidoreductase
MTDPRLESLLQSCPDLRLKTEAGDLEHYGRDWTRRWAPAPLAIALPGSVEEVQAVVRWANTHKVAVVPSGGRTGLSGGAVAANGELVLSLERMNKPLGFDAVDRTLVVQAGMPLEAVHNTAKEHGLIYPVDFAARGSCSIGGNIATNAGGIRVIRYGNTREWIAGLKVVAGNGELLELNKGLIKNSSGYDFRQLMIGSEGTLGIVVEATLKLTDPPPSTNVMVLALPSFEVLMQVFSAFRERLQLEAFEFFTDLAVKHVTAHGAQYPFEQIHPYYVVTEYASADEAGEAAALAAFEYCMEQGWVLDGVISTSEAQAQQLWRLREGITESVARYKPYKNDVSVRISAMPTFLAETQALINGAYPHFEVVWFGHIGDGNLHINVLKPDDTSDAEFLSQCEHVTKLLAQVLHRFDGSISAEHGIGLVKKAYLSSTRSEAEIALMRGVKRAFDPNWLLNPGKLFDA
>NZ_CP014274.1|WP_057628650.1|2178421_2179663_+|phosphoglycerate-dehydrogenase
MSPKKTSFPKQDIRVLLLEGVSQTAVDVFKAAGYSQIELYSKSLPEDELKARIAEAHIVGIRSRTHLSAEVLAHAKRLIAVGCFCIGTNQVDLEAAELAGIPVFNAPYSNTRSVAELVIAEAIMLTRGIPQKNAECHRGGWSKSAAGSHEVRGKTLGIIGYGHIGTQVGVLAEALGMHVIFHDIETKLSLGNAHPAISLDDLLARSDVVTLHVPENGSTQWMIGAEQLGKMKKGAHLINAARGTVVDIAALDAALGSGHLGGAAVDVFPVEPKGNGDLFESPLTAHDNVILTPHVGGSTLEAQENIGVEVAAKLVRYSDNGSTLSAVNFPEVTLPEHEQSLRLLHIHRNVPGVLSKINEIFSRHNLNIDGQFLRTDPKVGYVVIDISATEEQAAAIREELAAIQGTLRTRILY

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Crispr_ID: NZ_CP014274_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_11

2188526-2188663

Orphan

Consensus_repeat	Method
GGGAGGGGTTAGCCTTTTGCGGTAATTCCTCTGCCGAGCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014274_11

>merge|NZ_CP014274|11|2188526-2188663|CRISPRCasFinder
GGGAGGGGTTAGCCTTTTGCGGTAATTCCTCTGCCGAGCATGGCTCGGCACTACGCTCCTGCTCCCTCCCTTTGGCCAGCGGCCAAGGGGAGGGTTGGGGAGGGGTTAGCCTTTTGCGGTAATGCCTCTGCCGAGCAT

>NZ_CP014274|11|10|2188526-2188663|CRISPRCasFinder
GGGAGGGGTTAGCCTTTTGCGGTAATTCCTCTGCCGAGCAT	GGCTCGGCACTACGCTCCTGCTCCCTCCCTTTGGCCAGCGGCCAAGGGGAGGGTTG
GGGAGGGGTTAGCCTTTTGCGGTAATGCCTCTGCCGAGCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062167725.1\|2192024_2192663_-\|ligase-associated-DNA-damage-response-endonuclease-PdeM	unknown	unknown	gnl\|CDD\|274996
NZ_CP014274.1\|WP_062167726.1\|2192655_2195145_-\|ligase-associated-DNA-damage-response-DEXH-box-helicase	unknown	unknown	gnl\|CDD\|274994
NZ_CP014274.1\|WP_062167720.1\|2186269_2186779_+\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
NZ_CP014274.1\|WP_062167731.1\|2199579_2201700_+\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|238923
NZ_CP014274.1\|WP_062167715.1\|2180696_2182172_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_CP014274.1\|WP_062167727.1\|2195141_2196746_-\|ATP-dependent-DNA-ligase	unknown	unknown	gnl\|CDD\|236428
NZ_CP014274.1\|WP_057628650.1\|2178421_2179663_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NZ_CP014274.1\|WP_062167730.1\|2198616_2199408_+\|flagellar-biosynthetic-protein-FliR	unknown	unknown	gnl\|CDD\|235568
NZ_CP014274.1\|WP_062167729.1\|2198342_2198612_+\|flagellar-biogenesis-protein	unknown	unknown	gnl\|CDD\|235567
NZ_CP014274.1\|WP_062167714.1\|2176830_2178219_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP014274.1\|WP_062171570.1\|2196745_2197741_-\|ligase-associated-DNA-damage-response-exonuclease	unknown	unknown	gnl\|CDD\|274995
NZ_CP014274.1\|WP_057628707.1\|2183990_2184638_+\|methylthioribulose-1-phosphate-dehydratase	unknown	unknown	gnl\|CDD\|236415
NZ_CP014274.1\|WP_062167719.1\|2185362_2186061_+\|acireductone-synthase	unknown	unknown	gnl\|CDD\|319768
NZ_CP014274.1\|WP_062167717.1\|2184661_2185216_+\|acireductone-dioxygenase	unknown	unknown	gnl\|CDD\|224704
NZ_CP014274.1\|WP_062167732.1\|2201887_2203018_+\|flagellar-biosynthesis-protein-FlhB	unknown	unknown	gnl\|CDD\|235569
NZ_CP014274.1\|WP_062167722.1\|2188695_2190513_-\|DUF885-family-protein	unknown	unknown	gnl\|CDD\|227142
NZ_CP014274.1\|WP_062167723.1\|2190731_2192000_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129983
NZ_CP014274.1\|WP_062167721.1\|2186911_2188069_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277331
NZ_CP014274.1\|WP_082746551.1\|2179963_2180509_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239646
NZ_CP014274.1\|WP_062167716.1\|2182249_2183695_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062167725.1\|2192024_2192663_-\|ligase-associated-DNA-damage-response-endonuclease-PdeM	gnl\|CDD\|274996	TIGR04123, hypothetical_protein, metallophosphoesterase, DNA ligase-associated. Members of this protein family are an uncharacterized putative metallophosphoesterase associated with a DNA ligase, a helicase, and a putative exonuclease. It may play a role in DNA repair. Its system is present in about 12 % of prokaryotic reference genomes.	1.82695e-57
NZ_CP014274.1\|WP_062167726.1\|2192655_2195145_-\|ligase-associated-DNA-damage-response-DEXH-box-helicase	gnl\|CDD\|274994	TIGR04121, ATP-dependent_helicase, DEXH box helicase, DNA ligase-associated. Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H.	0
NZ_CP014274.1\|WP_062167720.1\|2186269_2186779_+\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	1.34204e-40
NZ_CP014274.1\|WP_062167731.1\|2199579_2201700_+\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.1725e-98
NZ_CP014274.1\|WP_062167715.1\|2180696_2182172_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.42925e-125
NZ_CP014274.1\|WP_062167727.1\|2195141_2196746_-\|ATP-dependent-DNA-ligase	gnl\|CDD\|236428	PRK09247, PRK09247, ATP-dependent DNA ligase; Validated.	0
NZ_CP014274.1\|WP_057628650.1\|2178421_2179663_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NZ_CP014274.1\|WP_062167730.1\|2198616_2199408_+\|flagellar-biosynthetic-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	3.03944e-55
NZ_CP014274.1\|WP_062167729.1\|2198342_2198612_+\|flagellar-biogenesis-protein	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	3.16278e-16
NZ_CP014274.1\|WP_062167714.1\|2176830_2178219_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	4.06345e-126
NZ_CP014274.1\|WP_062171570.1\|2196745_2197741_-\|ligase-associated-DNA-damage-response-exonuclease	gnl\|CDD\|274995	TIGR04122, hypothetical_protein, putative exonuclease, DNA ligase-associated. Members of this protein family frequently are found annotated as a putative exonuclease involved in mRNA processing. This protein is found, exclusively in bacteria, associated with three other proteins: an ATP-dependent DNA ligase, a helicase, and putative phosphoesterase.	5.56808e-179
NZ_CP014274.1\|WP_057628707.1\|2183990_2184638_+\|methylthioribulose-1-phosphate-dehydratase	gnl\|CDD\|236415	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase.	4.3913e-122
NZ_CP014274.1\|WP_062167719.1\|2185362_2186061_+\|acireductone-synthase	gnl\|CDD\|319768	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv. Oryzae enolase-phosphatase Xep. Enolase-phosphatase E1 (also called MASA) is a bifunctional enolase- phosphatase which promotes the conversion of 2,3-diketo-5-methylthio-1-phosphopentane to 1,2-dihydroxy-3-keto-5-methylthiopentene anion (an aci-reductone) in the methionine salvage pathway. The catalytic reaction is carried out continuously by enolization and dephosphorylation, and the enolase activity cannot be classified as typical enzymatic enolization. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.27011e-117
NZ_CP014274.1\|WP_062167717.1\|2184661_2185216_+\|acireductone-dioxygenase	gnl\|CDD\|224704	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown].	1.1356e-75
NZ_CP014274.1\|WP_062167732.1\|2201887_2203018_+\|flagellar-biosynthesis-protein-FlhB	gnl\|CDD\|235569	PRK05702, flhB, flagellar type III secretion system protein FlhB.	1.0028e-175
NZ_CP014274.1\|WP_062167722.1\|2188695_2190513_-\|DUF885-family-protein	gnl\|CDD\|227142	COG4805, COG4805, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP014274.1\|WP_062167723.1\|2190731_2192000_+\|amino-acid-permease	gnl\|CDD\|129983	TIGR00905, Arginine/ornithine_antiporter, transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions. [Transport and binding proteins, Amino acids, peptides and amines].	1.21138e-73
NZ_CP014274.1\|WP_062167721.1\|2186911_2188069_-\|metallophosphoesterase	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.7741e-55
NZ_CP014274.1\|WP_082746551.1\|2179963_2180509_-\|NUDIX-hydrolase	gnl\|CDD\|239646	cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	5.16379e-41
NZ_CP014274.1\|WP_062167716.1\|2182249_2183695_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	8.02514e-128

>NZ_CP014274.1|WP_062167721.1|2186911_2188069_-|metallophosphoesterase
MTLFVSLILPLLAIWLWWPVTPLSKRQRRWRTGISVGLALVGLGFATLWRLDVFSYSVEAWIQLVFGWVLVMFVLLLAFLLLREAGWLLSRLLPRSARLATLWHGAGFNHGAATVIVLLATLGIYNGLKPPQVHERDLVVPHLPKEMDGLRVAVLADLHISPVKRAWRTQRIVDATLAAKPDMIVLPGDMADGGLEDSGRFAEPLAQLKAPYGVWLAPGNHEYYYDYSAWMAHFRQMGLGVLENQSALLTINGRKLVVSGIGDLAALKPTSYMHGGLAPDMQAVVDGGRGGDVHVLLAHQPKQARAAAATGAIDLQISGHTHGGHMLGFDRWVVAPFNHGYVRGEYRVRGMALFVSSGVGQWDGFTARLGVPSSIDVLVLRSPAL
>NZ_CP014274.1|WP_062167720.1|2186269_2186779_+|MgtC/SapB-family-protein
MSITAEIGQALAAEFAIPDVRTLTAIVSRLSTAIILGGLLGLERERKGRAAGLKTHILVSVGSALFVLAPLQMGISGADVTRVMQGIVSGIGFLGAGAILKLDAEERIQGLTTAAGIWATAAIGMAAGMGLEMVAFITTLAALAVVSTLPKLMPEKRKNVEANEADLDT
>NZ_CP014274.1|WP_062167719.1|2185362_2186061_+|acireductone-synthase
MTINAILTDIEGTTSSISFVKEVLFPYARNALPGFVQAHGQEPQVRQWLDAVATEIAASACEDEVIVETLQGWIDQDRKHTALKALQGMIWDSGYRNGDYTAHMYPEVADVLRSWHARGLPLYVYSSGSVPAQKLFFGFSDAGDLNSLFSGNFDTEVGGKREAASYAHIAKSINIAPGEILFLSDIVEELDAARDAGLQTVLLDRLNDYPQPRTGEATHGHTRVERFDQITL
>NZ_CP014274.1|WP_062167717.1|2184661_2185216_+|acireductone-dioxygenase
MSRLRIFNETAPDAPLFDSRDGEVIAAELNKIGVTFERWQAKHPVAPGASQDEVFAAYREDIDRLVAAHGFKSVDVASIAPDNPARADIRKKFLDEHYHKEDEVRFFVAGSGLFTLHVDDKVYEVECVKDDLIAVPDSVKHWFDMGEEPSFVAIRFFTEPDGWVGHFTGTDIAQRFPRYQPSAA
>NZ_CP014274.1|WP_057628707.1|2183990_2184638_+|methylthioribulose-1-phosphate-dehydratase
MNAPTVPYDAQRLSELAQLLIDNIRELAHAGWTPATSSNFSHRLDDRHAAITVSGKDKGRLIESDIMVVDFDGKAVGRPLRPSAETLLHTQLYARFPEVGCVLHTHSPVQTIASRLYGSDGHIRLEGYELLKALHGNTTHETAVDLKVFPNTQDMDVLAAQVEAELDKGPMWGYLIDGHGLYAWGRDMAEARRHLEAFEFLLHCELELRRLRGNA
>NZ_CP014274.1|WP_062167716.1|2182249_2183695_+|amino-acid-permease
MFKQLWATKHPHAAHQEANGLSLRRTLGPWGLTALGIGAVIGGGIFVITGQAAANHAGPAIMLSFVLAAVCCAFCALAYAEFASMVPVSGSAYTYTYATFGELSAWFIGWMLVLEYGVSASAVAVSWTGYFLSFLNHFDIHLPAALVNAPLDAQLKPTGAIANIPAAILVLLLTWLCYVGISKSSAMNMAMVVLKTGLIILVIIAGWKYVDTSNWTPFIPANEGPGKYGFEGVLRGAAMVFFAYIGFEAVSVAAQESHRPQRDLPIGMLLSLVICTILYIAMAAVMTGLVPYQLLGTAEPVVTAVAAHPQLDWLRIIVEIGALIGLASVVLVMVIGQPRIFMIMGRDGLLPPVFTKIHPKYRTPHINTVITGIGIALLAALFPLDILGELTSMGTLIAFAAVCAGVLVLRRTQPDLPRPFRIPMAWLICSLGVLSCIALLTAMTLHNWMLMGVWTATGFIIYFLYGVRHSKLNAENKAKNG
>NZ_CP014274.1|WP_062167715.1|2180696_2182172_+|amino-acid-permease
MLKALLRVKPVEPAAHVDAGEPVEGSLQGEATLKRTLTAKHLILLGIGAVIGAGIFVLTGQAAANHAGPAVMLSFVFAGIACALAGLCYAEFAAMMPVSGSAYSYSYATLGEGMAWFIGWCLVLEYLFASASVAVGWSAYLISFITTTLHMPFPDALSAAPLAWTGSEFVNSGKLFNLPAVLIVAAITGLLYVGVTQSTLVNAVIVAIKITVICLFVGFGIQYIDPANWHPFIPQNTGTFGEFGWSGVFRAATIVFFAYIGFDAVSTAAGETKDPQKNMPIGLLGSLAVCTLVYIIVCAVLTGMLPYNLLGTDKPVATALEAYPSLSWLKTAVEIGAIAGLSSVVLVMMMGQSRIAYTISRDGLLPKVFGKVHPRFRTPYVSTIVVGVLAAALAGLVPLNVLGELVSMGTLLAFATVCIGVLVLRRTKPDIVRPFKVPAAWLICPLGAIACLALFMQAFVVHWHLFVGWTVLGLFIYFGYGIRHSKLNKRA
>NZ_CP014274.1|WP_082746551.1|2179963_2180509_-|NUDIX-hydrolase
MHEHDRQLDLALRNYAMAHPSDEGVTREFLTLLAEKRQDPFTRERVAGHFTGSAWLVSADGQRALLTHHRKLQRWLQLGGHADGDHDLAAVALREAEEESGLPGLSLASAEIFDLDRHWIPERKEVPGHWHYDVRYVVVAGGNEAFVVSEESLELAWRPVTEIAADQDESMRRMANRWLQR
>NZ_CP014274.1|WP_057628650.1|2178421_2179663_+|phosphoglycerate-dehydrogenase
MSPKKTSFPKQDIRVLLLEGVSQTAVDVFKAAGYSQIELYSKSLPEDELKARIAEAHIVGIRSRTHLSAEVLAHAKRLIAVGCFCIGTNQVDLEAAELAGIPVFNAPYSNTRSVAELVIAEAIMLTRGIPQKNAECHRGGWSKSAAGSHEVRGKTLGIIGYGHIGTQVGVLAEALGMHVIFHDIETKLSLGNAHPAISLDDLLARSDVVTLHVPENGSTQWMIGAEQLGKMKKGAHLINAARGTVVDIAALDAALGSGHLGGAAVDVFPVEPKGNGDLFESPLTAHDNVILTPHVGGSTLEAQENIGVEVAAKLVRYSDNGSTLSAVNFPEVTLPEHEQSLRLLHIHRNVPGVLSKINEIFSRHNLNIDGQFLRTDPKVGYVVIDISATEEQAAAIREELAAIQGTLRTRILY
>NZ_CP014274.1|WP_062167714.1|2176830_2178219_-|FAD-binding-oxidoreductase
MTDPRLESLLQSCPDLRLKTEAGDLEHYGRDWTRRWAPAPLAIALPGSVEEVQAVVRWANTHKVAVVPSGGRTGLSGGAVAANGELVLSLERMNKPLGFDAVDRTLVVQAGMPLEAVHNTAKEHGLIYPVDFAARGSCSIGGNIATNAGGIRVIRYGNTREWIAGLKVVAGNGELLELNKGLIKNSSGYDFRQLMIGSEGTLGIVVEATLKLTDPPPSTNVMVLALPSFEVLMQVFSAFRERLQLEAFEFFTDLAVKHVTAHGAQYPFEQIHPYYVVTEYASADEAGEAAALAAFEYCMEQGWVLDGVISTSEAQAQQLWRLREGITESVARYKPYKNDVSVRISAMPTFLAETQALINGAYPHFEVVWFGHIGDGNLHINVLKPDDTSDAEFLSQCEHVTKLLAQVLHRFDGSISAEHGIGLVKKAYLSSTRSEAEIALMRGVKRAFDPNWLLNPGKLFDA
>NZ_CP014274.1|WP_062167722.1|2188695_2190513_-|DUF885-family-protein
MTVRPLALAVSFSLATVLAACSPSSQPAAGDSSAQAPQADKAAQLNQLYADYWEGVLKLNPLQATFQGDNRYNDQLPDFGSAEFRKQSHDFTQEWLGKAEKIGDAGLAGQDLLSYRIFVEEQKQSLEGEKFPTWMMPVNQMGSTVSYAVMLGSGQVAQPFKTVKDYDNWLARAARIPVLLETENANMREGMKAGVVQPRVLMEKVVPQFDEIITAKAEDSQFWGPIKLLPADFSQADKDRLTEAFRSVINDKLMPAIKQQRDFIANEYLPATRDTVGLDSLPDGKAWYAFNAKQSTTTAQTPEQIHEIGLKEVERIHGEIQKVMAEVGFKGSLQDFFKFMQNDKQFEFKSEPELLEHYRGLEAKINANVPKLFSLTPKAGFEIRPIEAFRAKSAAGGEYMQPSEDGSRPGIFYVNTYDLPTRKTWDAEDLFLHEAIPGHHFQLALQQELSGVPAFRRFGGETAFIEGWGLYAESLGKDLGVYTDPYSYFGRLQGELWRAVRLVVDTGLHSKSWTRQQVLDYMFANSSVSEPDAIAEAERYIAWPGQALAYKTGELKIQELRKRAQDKLGAKFDIREFHAEVLKDGSVPLDVLDEKLNAWIAEKAK
>NZ_CP014274.1|WP_062167723.1|2190731_2192000_+|amino-acid-permease
MTTSRRPLGFWSATALVVGSMIGSGTFLLPATLAPYGAATLIGWGITLVGALLLAITFAQLAKRWPQTGGPYVFARNAFGELPGFLVAWSYWISMWCAIAAIAVAFAGSIGAIFPQLTATPVRAAACGLIALWACAGVNLVGMREAGRLQLLTTVLKVVPLLMFGLVALWLVDTSHYVPFNPSGESLGSVAGATVALTLWAMIGLEAATVPADSVDDAPRTIARATVTGTLIAGIATVLACTTVLGLLPADVLARSGAPMADAAAALWGPTAGMLLAVVMAISCVGALNGWTLLSAQLPMAAARDGVLPRAFAYENKRGTPVFGVIVSCLLATVLVICNYNRSLVDLFKFSVLLSTAATLLPYLAGAAAWLWRGSGIPSRLAAAGALAFSLYAIGGIGAEALLWGVALILAGLPIYFWLRRR
>NZ_CP014274.1|WP_062167725.1|2192024_2192663_-|ligase-associated-DNA-damage-response-endonuclease-PdeM
MVEQLELEIAGEPVILLADRALYWPAQRRLVIADLHLGKGSIMRRGGIPVPGGGTAADLQRLTALLAGTGAHSLWVLGDFLHGPHAARSDAQWQQFRADHAAIAITVVPGNHDRHFDAVQAQVTLASEGHRDGPFVFRHAPAAGPDTAAHVICGHLHPVVKLPGMGAHPVFWRRPSMTVLPAFSLFSGGIRIAPADGRGSVLCNGRELAVIG
>NZ_CP014274.1|WP_062167726.1|2192655_2195145_-|ligase-associated-DNA-damage-response-DEXH-box-helicase
MSSAGGARAARAQADARWLQWFASRGWKPAAFQREAWRRYRNGESGLLVTPTGSGKTLAMIGGPLLEAAATLPLAVAAGGRRAAATAQVRILWVTPLRALATDTARALREPIAALGLPWTVAMRTGDASARDKRLARQGRAEVLVITPESLALLLSYPQTQAQFAGLQAIVVDEWHELLDNKRGVLLQLCLARIRGWVPQLRLWGLSATLGNLEQARQVLLPQIPDAALVRAASPRRLVLQTALPKAGERFPWAGHLGLSQMQAVIEHLQQARSTLLFTNTRAQAELWYKALQSVWMDAPQSLALHHGSLDPALRAEVEQGLRDGAIRCVVATSSLDLGVDFPTVDQVIQLGSPKGMARLLQRAGRARHRPGEAGHILCVPTHAFELAEYAAARLALRSGHVEARRPLTLSLDVLSQHCVTLALGGGFDAGQLFAEVRSTHAFAALNAEQWTQVLQFIERGGTALQQYPDFCRVSRDADGRYVVSERRVAFRHRLSIGTITSDGAMLVRMARGGSLGSVEESFLSRLRPGDNFQFAGRTLRLLRLQDMTAYVRPAKQGSGIVPRWQGGRMPMSSELAAHVAAVLADPPRTPELRALAPLLALQARLSALPAAGGLLAEVLKTREGWHLFLYPFAGRAVHEGLAALIALRWSRLLPNTFAFAVNDYGLALTAAAEVELDVATLRTLLSPQSLLPDLAASVNLAELARRQFRDIARVAGLLPPSLPGRAARSLRQLQASSGLLHDVLRRYDPQHMLLQQAEREVLELRLDLPSLQRELQRCADARIDLKRPRTLTPLSFPLWAEAKRGSLSSEQWSVRVQRAAQRLEQRYG
>NZ_CP014274.1|WP_062167727.1|2195141_2196746_-|ATP-dependent-DNA-ligase
MQGFAALYQRLDRSTSLLEKRAALVDYFKNATAEDAAWALWLLVGGKVGGAKARIANSRELREWVAQESGLPDWLVEASYDQVGDLAETLALLLDEPAVAGADTGLAEWIEQRLLPVANAAPDVRRDVIVDAWRQLPMNERFVFNKVLTGALRVGVSQGLVQQALAQLSGLDVSLLAQRMLGFKAPTAVCFNSLLAAQGQAGDAALPYPFFLASSLEVPPDSLGGIADWLLEWKWDGIRVQLIRRGNDIVLWSRGEERMDGRFPEIEADLARLPHDAVIDGELLAWADGQTTPMPFTALQTRIQRRKPGPKILAQTPARVVAYDLLELDGQDLRQHSLQQRRAALQQLLDEHGSPLLQLSPQVRVADWAEAAGLRVQSRERGVEGFMLKRLDSPYRHGRKRGDWWKWKVDPLTIDAVLLYAQSGHGRRSTLYTDYTFGLWDQDKLVPVAKAYSGLDDKQILALDRWIRGHTTERFGPVRAVQPLQVFELGFEAVNRSARHKSGVAVRFPRILRWRQDKLAGQADVLETLRKVAK
>NZ_CP014274.1|WP_062171570.1|2196745_2197741_-|ligase-associated-DNA-damage-response-exonuclease
MDADLVELRPEGMYCPAGDFYIDPGQPVAQAVITHGHADHARTGMGCYHLANAGLPILRWRLGEQNYVPHPYGVPFRLGAATVSLHPAGHVLGSSQVRIEVDGQVWVASGDYKRQADPTCTPFEPVPCDVFITECTFGLPIYRWPDAAQVVADIAAWRDECAAQGETAILYCYALGKAQRVLAELLALGKTSPVWLHGAVDAGVQVYRDAGVQMVETHRVADAAADVDFAGQLVIAPPSAAGSRWLRRFRHAQQGFASGWMQLRGNRRRGNYDRGFILSDHADWPALLETVRQSRARRVIATHGNTDALVRMLNEQGIHSTTFALTRGEED
>NZ_CP014274.1|WP_062167729.1|2198342_2198612_+|flagellar-biogenesis-protein
MSPELALTELRGGLVATLWIAGPLLLVVLVVGVVIGVIQAATQLNEPTIAFVAKAAALTAALFALGSLLLGHLVEFTILLFQRIPHLIG
>NZ_CP014274.1|WP_062167730.1|2198616_2199408_+|flagellar-biosynthetic-protein-FliR
MDSVTQTVIDGQQAFAIIGNTLWIMLRIGAMLMAMPMLGTRAVPARVRAMLAVALSVALAPVLPPVPVFTGFDSATVLSILREVAVGVSIGFLLRLIFEAGAMAGEMIAQSTGLAFAQMADPMRGGSSGVIGQWFYLMFGLLFFTSNGHLALISLLVDSYKALPIGTALPDPHAVAALAPTLALQIFRGALSLALPLVVAMLAINLAFGVLARAAPALNPMQLGLPIALLLGLSLLTLLAGEMGPPVQRLFNTAFDTARQVTM
>NZ_CP014274.1|WP_062167731.1|2199579_2201700_+|bifunctional-diguanylate-cyclase/phosphodiesterase
MLVGSYNPLFVVLSILVAILASFTALDMASRVSASQPRRGAARWLLGGGVAMGAGIWSMHFVGMLAFRLPIPLGYDLWLTLESLLVAVAASIFALWLVSRPTLPHMRLALGALLMGLGIAWMHYVGMSALKMSPDIDYDPLWFALSLIIAVGASWSALYIAFRLRTVEHPLPQRLVAAAVMGLAIVGMHYTGMAAARFPAGAVCTAASSGGVPTEWLAACVVLLTVGVMAVVLTISLFEQRMQARLLHLRNSMLSASLDDARKELFHASLHDSLTRLPNRQLAHERIEQMLQERPAFTVMVVDLDGFRLINGTFGAQTGDAALVDVSERLRQLLPAEDLVGRLGGDQFVIASPLAQPDEHDALAERIILAVNSVRATGRDLRITASLGLARYPQHGNTAAQLIAMAETAMAYSRQSGRNNHAVFADWMNDNVEQDRRLLDDLRKALGTGQLSLHYQPRVHAHSGRISGAEALIRWRHPEHGYIPAERIIRLTEQSELMETVGNWVLGEACRQMRSWQDAGNNEWRVSVNLSGRQLGSPKLLEDVRAALDSNDLEPSRLILEISETAVMRDTENTIAVLRGIAGLGVGISIDDFGTGVSSLLHLKRLPATEIKIGRAFVMSLEDSDEDVVIVSAIVALGHALNLEVVAEGIETQGQRSYVERLGCDHLQGYLLGRPVSAENFMRLHGGDVQHAAMEARLASFQASPE
>NZ_CP014274.1|WP_062167732.1|2201887_2203018_+|flagellar-biosynthesis-protein-FlhB
MSENEQAGEKTELPTEKRLREAREQGNIPRSRELATAAVFVAAVLALYAMSDSMGGSARQWMKAALSPEPGLLDTPNALFGHAGWMLLQLMLAFTPLLLVCLAAGFIAPVLMGGLRFSSKAMMPDFNRMNPMSGIKRLVGPEALAELVKSLLRVVFVGTAAGLCIWHGVDALRGLLHLPLESAIGRGLGFTLKLLLATAGAMALLAAIDAPYQKWNWLRKLKMTREELRREMKESEGSPEVKGRIRQMQMQLSQRRMNEAVPTADVVLVNPTHYAVALKYESGRMNAPTVVARGVDEMALRIRQVADGNKVAIVSAPPLARALYRESQLGKEIPVRLYSAVALVLSYVYQLRQWRTGPMPQMASIDIDEFGKGDAR

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Crispr_ID: NZ_CP014274_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_12

2211741-2211846

Orphan

Consensus_repeat	Method
GCCCTCACCCCAACCCCTCTCCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014274_12

>merge|NZ_CP014274|12|2211741-2211846|CRISPRCasFinder
GCCCTCACCCCAACCCCTCTCCCGCTGCCGCAGGAGAGGGGCTTAAGCAAAGCCTCGCCGATTCAAGACTGCTCCAACACCGCCCTCACCCCAACCCCTCTCCCGC

>NZ_CP014274|12|11|2211741-2211846|CRISPRCasFinder
GCCCTCACCCCAACCCCTCTCCCGC	TGCCGCAGGAGAGGGGCTTAAGCAAAGCCTCGCCGATTCAAGACTGCTCCAACACC
GCCCTCACCCCAACCCCTCTCCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062167736.1\|2207941_2208691_+\|RNA-polymerase-sigma-factor-FliA	unknown	unknown	gnl\|CDD\|235901
NZ_CP014274.1\|WP_062167735.1\|2205277_2207074_+\|flagellar-biosynthesis-protein-FlhF	unknown	unknown	gnl\|CDD\|237182
NZ_CP014274.1\|WP_062167747.1\|2216548_2218510_+\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NZ_CP014274.1\|WP_062167743.1\|2212657_2213605_+\|flagellar-motor-protein-MotD	unknown	unknown	gnl\|CDD\|181618
NZ_CP014274.1\|WP_062167737.1\|2209096_2209717_+\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|377318
NZ_CP014274.1\|WP_062167730.1\|2198616_2199408_+\|flagellar-biosynthetic-protein-FliR	unknown	unknown	gnl\|CDD\|235568
NZ_CP014274.1\|WP_062167732.1\|2201887_2203018_+\|flagellar-biosynthesis-protein-FlhB	unknown	unknown	gnl\|CDD\|235569
NZ_CP014274.1\|WP_062167734.1\|2203014_2205123_+\|flagellar-biosynthesis-protein-FlhA	unknown	unknown	gnl\|CDD\|235672
NZ_CP014274.1\|WP_062167744.1\|2213604_2214387_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP014274.1\|WP_062167731.1\|2199579_2201700_+\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|238923
NZ_CP014274.1\|WP_152984537.1\|2208716_2209097_+\|chemotaxis-protein-CheY	unknown	unknown	gnl\|CDD\|381150
NZ_CP014274.1\|WP_057628681.1\|2215841_2216150_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|379202
NZ_CP014274.1\|WP_057628672.1\|2207060_2207945_+\|MinD/ParA-family-protein	unknown	unknown	gnl\|CDD\|349758
NZ_CP014274.1\|WP_062167745.1\|2214383_2215358_+\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|366716
NZ_CP014274.1\|WP_062167746.1\|2216146_2216512_+\|response-regulator	unknown	unknown	gnl\|CDD\|381110
NZ_CP014274.1\|WP_062167741.1\|2211913_2212654_+\|flagellar-motor-protein	unknown	unknown	gnl\|CDD\|181654
NZ_CP014274.1\|WP_062167750.1\|2221172_2223809_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP014274.1\|WP_062167739.1\|2209720_2211589_+\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NZ_CP014274.1\|WP_062167749.1\|2218808_2221055_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP014274.1\|WP_062167751.1\|2224218_2226450_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062167736.1\|2207941_2208691_+\|RNA-polymerase-sigma-factor-FliA	gnl\|CDD\|235901	PRK06986, fliA, flagellar biosynthesis sigma factor; Validated.	5.29765e-105
NZ_CP014274.1\|WP_062167735.1\|2205277_2207074_+\|flagellar-biosynthesis-protein-FlhF	gnl\|CDD\|237182	PRK12727, PRK12727, flagellar biosynthesis protein FlhF.	0
NZ_CP014274.1\|WP_062167747.1\|2216548_2218510_+\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	0
NZ_CP014274.1\|WP_062167743.1\|2212657_2213605_+\|flagellar-motor-protein-MotD	gnl\|CDD\|181618	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed.	1.21034e-129
NZ_CP014274.1\|WP_062167737.1\|2209096_2209717_+\|chemotaxis-protein	gnl\|CDD\|377318	pfam04344, CheZ, Chemotaxis phosphatase, CheZ. This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterized by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site.	1.66709e-26
NZ_CP014274.1\|WP_062167730.1\|2198616_2199408_+\|flagellar-biosynthetic-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	3.03944e-55
NZ_CP014274.1\|WP_062167732.1\|2201887_2203018_+\|flagellar-biosynthesis-protein-FlhB	gnl\|CDD\|235569	PRK05702, flhB, flagellar type III secretion system protein FlhB.	1.0028e-175
NZ_CP014274.1\|WP_062167734.1\|2203014_2205123_+\|flagellar-biosynthesis-protein-FlhA	gnl\|CDD\|235672	PRK06012, flhA, flagellar type III secretion system protein FlhA.	0
NZ_CP014274.1\|WP_062167744.1\|2213604_2214387_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	4.50289e-60
NZ_CP014274.1\|WP_062167731.1\|2199579_2201700_+\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.1725e-98
NZ_CP014274.1\|WP_152984537.1\|2208716_2209097_+\|chemotaxis-protein-CheY	gnl\|CDD\|381150	cd19923, REC_CheY_CheY3, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY3 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY3, Escherichia coli CheY, and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.86018e-68
NZ_CP014274.1\|WP_057628681.1\|2215841_2216150_+\|STAS-domain-containing-protein	gnl\|CDD\|379202	pfam13466, STAS_2, STAS domain. The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.	7.69941e-11
NZ_CP014274.1\|WP_057628672.1\|2207060_2207945_+\|MinD/ParA-family-protein	gnl\|CDD\|349758	cd02038, FlhG-like, MinD-like ATPase FlhG. FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.	1.24807e-104
NZ_CP014274.1\|WP_062167745.1\|2214383_2215358_+\|chemotaxis-protein-CheW	gnl\|CDD\|366716	pfam01584, CheW, CheW-like domain. CheW proteins are part of the chemotaxis signaling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and other related proteins that are involved in chemotaxis. The CheW-like regulatory domain in CheA binds to CheW, suggesting that these domains can interact with each other.	6.96066e-32
NZ_CP014274.1\|WP_062167746.1\|2216146_2216512_+\|response-regulator	gnl\|CDD\|381110	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.47408e-66
NZ_CP014274.1\|WP_062167741.1\|2211913_2212654_+\|flagellar-motor-protein	gnl\|CDD\|181654	PRK09109, motC, flagellar motor protein; Reviewed.	3.60911e-143
NZ_CP014274.1\|WP_062167750.1\|2221172_2223809_+\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	2.81997e-110
NZ_CP014274.1\|WP_062167739.1\|2209720_2211589_+\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	1.42414e-164
NZ_CP014274.1\|WP_062167749.1\|2218808_2221055_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.11351e-109
NZ_CP014274.1\|WP_062167751.1\|2224218_2226450_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	4.51073e-98

>NZ_CP014274.1|WP_062167739.1|2209720_2211589_+|chemotaxis-protein-CheA
MSAFADDIAADFILEAQEILDRLGEQLVTLEQAPHDSEQLNAVFRGFHTLKGGAGFLAIHPMVELCHAAEETLGMARAGKAELLAHHFDAAQQSLDWLQAMLDAVSSGTDPEHAPAALIAQFDVGNAPVVAAAPVAAAASDSELISEDEFEALLNELHGSGTPGAQPITAKADDGLIDEDEFEALLDKLHGGAAPGAVALQAAPAVTPAPAPIAAPPRAAVPARPAAAAAKPAAAKAAEPEHTVRVDTKRLDAIVNLIGELVLARNRLKTLRTRLKDEELDRAVSTLDIATARLQSAVMRTRMQPVGKVFSRFPKVARDVARSLQKEVDLELIGADTELDRNLVEALADPLVHLVRNAIDHGVESPELREAQGKPRMGRVRLSAQQEGDYVSIEVQDDGAGIDPERLRAKARDKGLIDPEAAARLTSEECLHLVFLPGFSTKQEVTDISGRGVGMDVVQSRIRELSGQIQIQSELGRGSRFLIRVPLTLAILPTLLVQAGEDVYALPLARVMEVLHAPATSLGWFDGRAVLDRKSHTLALLDLRQWLGVSPAPSTLLTIVVLQMGEARFGLVVDQVRGREEVVIKPLPRALRGLNGYAGATLIGDGRMALILDVDGLRGGQG
>NZ_CP014274.1|WP_062167737.1|2209096_2209717_+|chemotaxis-protein
MDGLGEALNDKSALVQRLQDALAALESGDEPGWRREIDALAALRTQPMMSGLGRLARELGQALGELPSVPSEAGELDDACARLDHVVEMTEQATHRTLDLAEECRALTERLRADGLNADQGEILERIRHNLTEVALTQSYQDLTGQIIRRVVGIVRRVHEGFGALGLPPPEEDARNQGLAGPAVNGLDRHAVSQVDADDLLSDLGL
>NZ_CP014274.1|WP_152984537.1|2208716_2209097_+|chemotaxis-protein-CheY
MRILIVDDFSTMRRIVKNLLGDLGFTNTAEAEDGHAALSLLQSQSFDFVVTDWNMPVMTGIELLKAIRNDAKLKTLPVLMVTAEAKREQIIEAAQSGVNGYIIKPFTAQTLEEKLGKIFERLAASA
>NZ_CP014274.1|WP_062167736.1|2207941_2208691_+|RNA-polymerase-sigma-factor-FliA
MNNAAAQYREVQRSAANDCIARHADLVRRIAHHLAARLPASVEVDDLIQAGMMGLIEASRSYDAEQGASFETYASIRIRGSMIDEIRRGDWVPRSVHRRARDAAATIRRLEQSTGRSASASEVAEAMELPLPDYMRLVEDASRGQVLSLESRIEDQGELDTPTTGGPNPQQVLERSQFGAELGKAIGQLPEREQLVLSLYYEQELNLKEIGAVLGVSESRVCQIHGQAMLRLRGRLKIFEAADAGLEEP
>NZ_CP014274.1|WP_057628672.1|2207060_2207945_+|MinD/ParA-family-protein
MQSREYAKLTNTFPLSATRHEPAGPVRTIAVTGGKGGVGKTNVSANLAVALAGMGKRTLLLDADLGLANIDVVLGLQPKHTLADLVAGRATLEEVIIEGPNGVLVVPAASGRRHMAELQPAEHVGLVNVFSELERDLDVMIIDTAAGITDSVLTFCQAAQDTVVVVCDEPASITDAYALIKVLSRERGVDRIQVVANMVRDPNEGRALYEKLVRVCEKFLIDVSLNYLGCVPQDDWLRLSVQRQQPVVKLYPSAPASLAINEIARRTARWQAPTAPRGGVEFFLERIIQQKVKA
>NZ_CP014274.1|WP_062167735.1|2205277_2207074_+|flagellar-biosynthesis-protein-FlhF
MKIKRFVAADMRTAMNLVRKEHGPDAVILSNRRIEEGVEIVAAAHYDETAVQQALEATRPAPPAPAKPRSAAEAIMAAMTRRKTPEPEPVTATTSAVAALARSAVGATGRSIDSSVDLAPGSRFAGLLRSAEVEPAAPRQPAVAQSLFATQPASADELPVVPAFRPAGSGAAIAPLAPAPVAASTAQASFADAIAAVTIAPPAPVERARFVIDPPLPEPTRAPPVAAPALPAAAAMHAPSSDALVAAAAVAPVAAPVTVVEPAQPLHATMQPGAPVAAAATAALSPVPTSPAVAARDNEQLSQLRQEVAGMRHLIEREMNRFTDERLRGSAVRANALDLMDEYGFDAGLARDVATQIPADIDPSRARGLMLGLISKKLPIAPVDPMETGGIIALVGPTGAGKTTTIAKLASRFAEAHAARDVALVTTDTQRIGAREQLYGFGRQLGIAVHEANSGTDLNQLLQKLADYKLVLIDTAGLGQRDRALTAQLQWLRAAGQIRTLLVLPANTAFQDMDEVVRRFSAANPQGVVLTKLDETGRFGSALSVAVDHRLPITWVTDGQDVPEDLYRASAANLVLRLEDLRRAADMPCNPELNNAVA
>NZ_CP014274.1|WP_062167734.1|2203014_2205123_+|flagellar-biosynthesis-protein-FlhA
MSSQTSGFSARRALDMLRHGLGAPLIVLALLAMVVVPLAAPVLDALFTLNIAISMLVLLAVVYVRRPLDFTIFPIVLLVTTMLRLALNVASTRVILLNGQNGHDAAGKVIAAFGEFVIGGNYAVGIVVFAILTIINFVVITKGAGRVSEVTARFILDAMPGKQMAIDADLNAGLLTREEAKLRREEVREEADFYGAMDGASKFIRGDAIAGILILFINMLGGLAVGVLQHDMAFGDAAATYTLLSIGDGLVAQLPALLVSSAVAMLVTRASRSQDMSEAMMGQVFGQYRALAITAGIIGLVGLVPGMPNLAFLSLAVILGFIAWKLWKRETSAAANAAASATAATEGGMNALGQPQPAPTAELTWDELRPVDPLGLEVGYRLIPLVDKTQGGELMARIKGVRRKLTQDMGFLIPPVHIRDNLELPATHYRLLIHGVPVSTADIHPDRELALDPGSAMGKLDGIAGKDPAFGLDATWIQPHQRAHAESLGYTVVDPATVVATHLSHLIREHAPELLGHEEVQQLLATLAKSAPKLAEDLSPKALPLSTVARVLQNLLVERIPIRQLRKIAEALVEAAPVTQDPAALTAAVRNTLGRFIVQEIAGSSPELPVFTLNPQLERVLQESTQGNGAALEPGLAERLHQSLAECVGKQEARNEPAVVLVPAPVRAALARLVRHSVPSLSVLAYSEVPEDKRLKLVGTIS
>NZ_CP014274.1|WP_062167732.1|2201887_2203018_+|flagellar-biosynthesis-protein-FlhB
MSENEQAGEKTELPTEKRLREAREQGNIPRSRELATAAVFVAAVLALYAMSDSMGGSARQWMKAALSPEPGLLDTPNALFGHAGWMLLQLMLAFTPLLLVCLAAGFIAPVLMGGLRFSSKAMMPDFNRMNPMSGIKRLVGPEALAELVKSLLRVVFVGTAAGLCIWHGVDALRGLLHLPLESAIGRGLGFTLKLLLATAGAMALLAAIDAPYQKWNWLRKLKMTREELRREMKESEGSPEVKGRIRQMQMQLSQRRMNEAVPTADVVLVNPTHYAVALKYESGRMNAPTVVARGVDEMALRIRQVADGNKVAIVSAPPLARALYRESQLGKEIPVRLYSAVALVLSYVYQLRQWRTGPMPQMASIDIDEFGKGDAR
>NZ_CP014274.1|WP_062167731.1|2199579_2201700_+|bifunctional-diguanylate-cyclase/phosphodiesterase
MLVGSYNPLFVVLSILVAILASFTALDMASRVSASQPRRGAARWLLGGGVAMGAGIWSMHFVGMLAFRLPIPLGYDLWLTLESLLVAVAASIFALWLVSRPTLPHMRLALGALLMGLGIAWMHYVGMSALKMSPDIDYDPLWFALSLIIAVGASWSALYIAFRLRTVEHPLPQRLVAAAVMGLAIVGMHYTGMAAARFPAGAVCTAASSGGVPTEWLAACVVLLTVGVMAVVLTISLFEQRMQARLLHLRNSMLSASLDDARKELFHASLHDSLTRLPNRQLAHERIEQMLQERPAFTVMVVDLDGFRLINGTFGAQTGDAALVDVSERLRQLLPAEDLVGRLGGDQFVIASPLAQPDEHDALAERIILAVNSVRATGRDLRITASLGLARYPQHGNTAAQLIAMAETAMAYSRQSGRNNHAVFADWMNDNVEQDRRLLDDLRKALGTGQLSLHYQPRVHAHSGRISGAEALIRWRHPEHGYIPAERIIRLTEQSELMETVGNWVLGEACRQMRSWQDAGNNEWRVSVNLSGRQLGSPKLLEDVRAALDSNDLEPSRLILEISETAVMRDTENTIAVLRGIAGLGVGISIDDFGTGVSSLLHLKRLPATEIKIGRAFVMSLEDSDEDVVIVSAIVALGHALNLEVVAEGIETQGQRSYVERLGCDHLQGYLLGRPVSAENFMRLHGGDVQHAAMEARLASFQASPE
>NZ_CP014274.1|WP_062167730.1|2198616_2199408_+|flagellar-biosynthetic-protein-FliR
MDSVTQTVIDGQQAFAIIGNTLWIMLRIGAMLMAMPMLGTRAVPARVRAMLAVALSVALAPVLPPVPVFTGFDSATVLSILREVAVGVSIGFLLRLIFEAGAMAGEMIAQSTGLAFAQMADPMRGGSSGVIGQWFYLMFGLLFFTSNGHLALISLLVDSYKALPIGTALPDPHAVAALAPTLALQIFRGALSLALPLVVAMLAINLAFGVLARAAPALNPMQLGLPIALLLGLSLLTLLAGEMGPPVQRLFNTAFDTARQVTM
>NZ_CP014274.1|WP_062167741.1|2211913_2212654_+|flagellar-motor-protein
MDRLSIIGLFLALASLVGGSILKGAGLSSLWSPAAFVIVIIGTLAAILLHTSPAVFKHAFKIVRWVIRPPASDPRALVQQIVDWSNIARRQGLLGLEPQVELQDDPFIRKGLQLVVDGVEPDTIRHMLEIELGSQEQQDLAATKVFEGMGIYAPTLGIIGAVLGLIAVMKNLADPSKLGHGIAAAFTATIYGIASANLLFLPVSAKLKGVIASSCREREMIIEGLIAIAQGENPRNIENSLAGFVN
>NZ_CP014274.1|WP_062167743.1|2212657_2213605_+|flagellar-motor-protein-MotD
MARRRHHEEHANHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYRVMADALTTAFGGAPRTISQVQVGNQQVQGGGFDSPSVIRAPSMTGGALADPTQLPSMASHMRMPVSAHNQDQLQRAERQLNQIADRLSKSLAPLVKQGVISVRRTELWIEVEINSDILFGTGSAALDASARTTLGTLADVLLDAPNGVRVEGHTDNLPIATAQFPSNWELSAARAASVVHLFADHGVQPQRLAMVGYGQFRPRDSNDAPEGRNRNRRVMVIILADSAAAADLPAAGNTTASTSGGDDSGGAPAAAAVRSAVPAVIEGVH
>NZ_CP014274.1|WP_062167744.1|2213604_2214387_+|ParA-family-protein
MRIWAIANQKGGVGKTTTTLSLGRGLAARGHKVLLIDLDPHSSLTRAFGVPIEPVPQGVQELFAAPPHEISALARHSDIPGLDYLCAQASLATLERRSANQPGLGLALQQALQRHGEQHDYILLDCAPTLGLLMINALAAADRLIIPTQAEPLALHGLDGMVRTGEMVERSRKRALPISVLPTLFDRRTRAGNETLKLMQDRHGERVWEDAIPIDTRICNPTALTVPLLGDDYPGRGMAAYRRALEWLLLNEAAQLERAA
>NZ_CP014274.1|WP_062167745.1|2214383_2215358_+|chemotaxis-protein-CheW
MSNDVLDDYLGELLLEAVPDPVAVAPAVAAKPSAAAAPGDSAELEAVFEAALAEAQAKAAAAPQPPPSMPGDSAALQAAFDDAMAATNAANASRAPTWDDLPDEVIYETGPAESRKLAHSDSASLQAAFATAAGLPAPPPAPPRSTPNVRALDTPAADARPSTWQELQAQAQRPASSPQHRRAAERSSRWLRLRCGQQTYALELLKVQEVVLPVPLLALRGTGPAMLGIMNLRGQVVPVMDLCRHLEVHSAPEDAQTRIVVLEENGETLGLRVSAVEDVANLNDSQIEPPDTARICQISNELFRGIARVGQQPMILLDADRLLR
>NZ_CP014274.1|WP_057628681.1|2215841_2216150_+|STAS-domain-containing-protein
MSTVALAQDLGIESTSELKQQLATHLPQAGELRVDAGQVGRVHTAAMQVLCAFVLARQQAGHGTVFDNATDTFRDAARLLGVLRTLGLEATPDTTKSVENAA
>NZ_CP014274.1|WP_062167746.1|2216146_2216512_+|response-regulator
MSARILVVDDSASMRQMVSFALTSAGFSVEEAEDGAVALGRAKGQRFNAVVTDVNMPNMDGIALIRELRQLPDYKFTPMLMLTTESAADKKSEGKAAGATGWLVKPFNPEQLIATVQKVLG
>NZ_CP014274.1|WP_062167747.1|2216548_2218510_+|chemotaxis-protein-CheA
MSMDLQRFHATFFEESREGLDAMEAGLLALEDGQHDPEVINSVFRAAHSIKGGAGTFGFDAIAALTHVLETLLDELRAGKRALEGNAVDAMLGSVDVLRALLREVEHGQAADPAAVKAVTDRLQAVLAGDAPVAAAAPKQEETPDAWQIGFAPAPSLFMSGNDPLRIIRELETLGSLHVEPRMARLPSFDQLDPLEAYLAWDLGLVGKVPRSRIEDTFAWVVDDCELDIRPAAPPSLAVEAPVATPVVNNEAAAKAPASAQQHEAESSIRVSVDKVDALINLVGELVITQAMLKQVSGGLDPVHAEQLFAGLDLLERNTRDLQEAVIGVRMLPVDAVFRRFPRLVRDLSSRLGKQVRLRTIGEGTELDKGLIEKIADPLVHLVRNSIDHGLEMPDVRREAGKDETGTITLAASHQGGHIVIEVSDDGRGLNRDKILSKALERGLSVPDNPTDAQVWDLIFQPGFSTADAVTDLSGRGVGMDVVRRNIQALGGEVQLESRTGAGTRVLIRLPLTLAILDGMTVSIAGETLILPLAYVLEALQPQPEDIRTMAGEGRVLRVRGEYLPILSLGQYYGYPDNPQAEPLVVVVEGDGQKIALEVDELIGQQQVVVKNIENNYRRISGVSGATILGDGRVALIVDIGGLVRSLRTQQAA
>NZ_CP014274.1|WP_062167749.1|2218808_2221055_+|methyl-accepting-chemotaxis-protein
MKWFQNLSITRKLVLAFCSTSLLTLLLALFALWRMTVADAQIQQVNNNWMPSVQQLGEMRAQLGEYRTFEQAQLSYQGNPAQLADYDKRMADTRKLIEAAEKAYDDIDSDYNPEELALYEKMKELRAGYFEAHDRIAAAIAADDFVTASNISSNESRMLRRGLFDQLKQLSQYNQAQLTKQTAESRSAHKRSLLAILAGLGVSLLLAAALGVAIIRAITVPLAEAVRVADDVAAGKLDRRIDTSRRDEVGMLLQSMQRMQAQLQAVIGAQREMAHQHDAGSISYRMDEAAFPGDYGVMVKESNALVASHIQMLLSALEIIKRYATGDLSIDIERLPGEKAVITETVDAVKASLSAINNEIKHLASAAAMGDFSVRGDADAYQHDFRDMVSSLNQLMETTDGNLSELSKLLQAIARGDLTAKMQGDFHGVFANMRDDANATVGQLTDIIGRIQHAASSINLAASEIATGNSDLSRRTEQQAANLEETAASMEELTSTVRQNAEHARQANQLAIGAHGVASQGGNVVGQVVTTMSAIEASSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKGLIDDSVSKVGEGSTLVQQAGTTMGEIVTSVQRVTDIMAEISAASQEQSAGIDQVNQTVMQMDETTQQNAALVEEATAAARSMEDQANQLTEAVAVFRTANVQDVAAPPRHSKPAAAAPAPVRRLRSAVPVQRGNTAVRIDNDSDWQEF
>NZ_CP014274.1|WP_062167750.1|2221172_2223809_+|HAMP-domain-containing-protein
MSLPTGFLTRSIAMRLMLGTALVATFAFGLTAWTIYLRSSDALLAASRVSLENMAQLEAQRISAELGRGFESNANLSRSFLALRQQGGFSRQNAAAILQAQALNNPQWVGVGTLWEPDAFDGEDANHIDAEGHDATGRFMSYWAWQNGAPVQEALRGYDVPGDGDWYLQPRASKKPSVLEPYSYEIGGKKILMTTLATPILQDDKFLGVATVDFALQSLQDRLSKMHPMQQGYVRLLSPAGTIIADRDPAKVGSKADDSDTRAMLAATAKGQVTFEQHRDAQRDEQMIETYVPLKIGNAEQSFAFGVVVPRALLMQQARALLWTIIIVGVLAALLLCGALYLLLRRFVFTPLNDAVKISDNIAAGKLDNHISAQRDDELGTLLTSMQRMQTRLQAVIGAQREMAHQHDAGSISYRMDEAAFPGDYGVMVKESNALVASHIQMLLSALEIIKRYATGDLSIDIERLPGEKAVITETVDAVKASLSAINNEIKHLASAAAQGDFSVRGDADAYQHDFRDMVSSLNQLMETTDGNLSELSKLLQAIARGDLTAQMQGDFHGVFANMRDDANATVGQLTDIIGRIQHAASSINLAASEIATGNSDLSRRTEQQAANLEETAASMEELTSTVRQNAEHARQANQLAIGAHGVASQGGNVVGQVVTTMSAIEASSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKGLIDDSVSKVGEGSTLVQQAGTTMGEIVTSVQRVTDIMAEISAASQEQSAGIDQVNQTVMQMDETTQQNAALVEEATAAARSMEDQANQLTEAVAVFRTAAANTGVRTIASAPAAAAARRAQPYLRPVSASAHGTQASRQNTDADWKQF
>NZ_CP014274.1|WP_062167751.1|2224218_2226450_+|methyl-accepting-chemotaxis-protein
MEFFRNLSIARKLALAFTLTTLTTLAMGGFAVVRLNQATQQLAQVTTRFMPAVQYLEKMRADLAEIRIAELSQLAHLDDPSFVAEYNQRIVEQRQKLAEHRKQYEALPADATQQGLYADMGKTLEAYFGAHAQMEKAIVAGEFEQAQRISNDQSRISRRNLFDAVEKLSGHVALVLDKEVAAADATQTRSSHAIVVCMVLLGLLSVVLGVVIVRAIVRPVNQALRAADDVASGRLDGSIDSSRKDEVGTLLASMQRMQNQLKAVIGAQREMAREHDLGMISFRIDESKFPGEYGRMVAEVNTLVAQHIGVKMRVVEVMRHYARGDLSIDMDRLPGEKAAITEAMDSTKASLAAINNEIKRLAHAAAAGDFSQRGDADQFEHDFRAMVGGVNSLMETTEDNLGHLSRLLQAVAQGDLTQRMEGDFHGVFARMRDDGNATIEQLGSIVSRIQAASGSISLSASEIATGNDDLSRRTEQQAANLEETAASMEELTSTVRQNAEHARQADQLARGAADVAAQGGAVVGQVVSTMTSIEQSSQRIADIISVIDGIAFQTNILALNAAVEAARAGDQGRGFAVVASEVRTLAQRSAAAAKEIKGLIDTSVEKVTEGSQLVRRAGNTMDDIVASVQRVTTIMADISAASQEQSSGIEQVNQTVMQMDETTQQNAALVEEATAAARSMEDQAHQLSAAVAQFRLAGTVSASLAKVAASASAAPPRGRPALRAIPKPSGRAPVANADDWQEF

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Crispr_ID: NZ_CP014274_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_13

2246022-2246136

Orphan

Consensus_repeat	Method
CAGGACTGGTGATTGCTTCTGCTTCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014274_13

>merge|NZ_CP014274|13|2246022-2246136|CRISPRCasFinder
CAGGACTGGTGATTGCTTCTGCTTCCGGTGCGGTGGTGGATTCTGCTGGCGCAGCGTTCTCGTTGGTATTGGCGTTCGAGGCGCTGTCAGGGCTGGTGATTGCTTCTGCTTCCGG

>NZ_CP014274|13|12|2246022-2246136|CRISPRCasFinder
CAGGACTGGTGATTGCTTCTGCTTCCGG	TGCGGTGGTGGATTCTGCTGGCGCAGCGTTCTCGTTGGTATTGGCGTTCGAGGCGCTGT
CAGGGCTGGTGATTGCTTCTGCTTCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062167770.1\|2254153_2254552_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|224404
NZ_CP014274.1\|WP_062167769.1\|2251523_2254115_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	unknown	unknown	gnl\|CDD\|236424
NZ_CP014274.1\|WP_062167776.1\|2260925_2262449_-\|calcineurin-phosphoesterase	unknown	unknown	gnl\|CDD\|379837
NZ_CP014274.1\|WP_062167771.1\|2254548_2254782_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|198034
NZ_CP014274.1\|WP_152984538.1\|2232211_2232517_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062167759.1\|2232600_2234982_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP014274.1\|WP_082746714.1\|2239821_2241393_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP014274.1\|WP_062167773.1\|2255062_2257828_+\|aconitate-hydratase-AcnA	unknown	unknown	gnl\|CDD\|236445
NZ_CP014274.1\|WP_062167760.1\|2235090_2237256_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP014274.1\|WP_062167765.1\|2238709_2239765_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
NZ_CP014274.1\|WP_062167755.1\|2229217_2229970_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NZ_CP014274.1\|WP_062167774.1\|2258195_2258648_-\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379639
NZ_CP014274.1\|WP_062167761.1\|2237271_2238117_+\|chemotaxis-protein-CheR	unknown	unknown	gnl\|CDD\|236725
NZ_CP014274.1\|WP_082746552.1\|2247553_2249587_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|274550
NZ_CP014274.1\|WP_062167775.1\|2258753_2260436_+\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|181546
NZ_CP014274.1\|WP_062167768.1\|2249586_2250828_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP014274.1\|WP_062167777.1\|2262702_2263341_-\|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE	unknown	unknown	gnl\|CDD\|235067
NZ_CP014274.1\|WP_062167763.1\|2238113_2238713_+\|chemoreceptor-glutamine-deamidase-CheD	unknown	unknown	gnl\|CDD\|237396
NZ_CP014274.1\|WP_062167758.1\|2231517_2232009_+\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|182587
NZ_CP014274.1\|WP_156455812.1\|2230334_2231078_+\|pilus-assembly-protein-PilZ	unknown	unknown	gnl\|CDD\|377813

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062167770.1\|2254153_2254552_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|224404	COG1487, VapC, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only].	5.72044e-15
NZ_CP014274.1\|WP_062167769.1\|2251523_2254115_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
NZ_CP014274.1\|WP_062167776.1\|2260925_2262449_-\|calcineurin-phosphoesterase	gnl\|CDD\|379837	pfam16370, MetallophosC, C terminal of Calcineurin-like phosphoesterase. This is the C-terminal of Calcineurin-like phosphoesterases. It is around 150 residues in length from various Bacteroides species. The function of this family is unknown.	6.19315e-39
NZ_CP014274.1\|WP_062167771.1\|2254548_2254782_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|198034	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain. This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. AbrB is thought to interact directly with the transcription initiation regions of genes under its control. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator. DNA-binding activity in this AbrB homologue requires hexamerisation. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins.	1.3443e-08
NZ_CP014274.1\|WP_062167774.1\|2258195_2258648_-\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379639	pfam14534, DUF4440, Domain of unknown function (DUF4440).	0.00734921
NZ_CP014274.1\|WP_062167768.1\|2249586_2250828_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	8.13899e-99
NZ_CP014274.1\|WP_082746714.1\|2239821_2241393_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.78977e-14
NZ_CP014274.1\|WP_062167773.1\|2255062_2257828_+\|aconitate-hydratase-AcnA	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
NZ_CP014274.1\|WP_062167760.1\|2235090_2237256_+\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	2.03301e-103
NZ_CP014274.1\|WP_062167765.1\|2238709_2239765_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	6.28414e-178
NZ_CP014274.1\|WP_062167755.1\|2229217_2229970_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.54202e-19
NZ_CP014274.1\|WP_062167761.1\|2237271_2238117_+\|chemotaxis-protein-CheR	gnl\|CDD\|236725	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR.	6.89804e-105
NZ_CP014274.1\|WP_082746552.1\|2247553_2249587_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|274550	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP014274.1\|WP_062167775.1\|2258753_2260436_+\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|181546	PRK08751, PRK08751, long-chain fatty acid--CoA ligase.	0
NZ_CP014274.1\|WP_062167759.1\|2232600_2234982_+\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	5.23179e-102
NZ_CP014274.1\|WP_062167777.1\|2262702_2263341_-\|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE	gnl\|CDD\|235067	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE.	6.29059e-112
NZ_CP014274.1\|WP_062167763.1\|2238113_2238713_+\|chemoreceptor-glutamine-deamidase-CheD	gnl\|CDD\|237396	PRK13487, PRK13487, chemoreceptor glutamine deamidase CheD; Provisional.	2.13912e-124
NZ_CP014274.1\|WP_062167758.1\|2231517_2232009_+\|chemotaxis-protein-CheW	gnl\|CDD\|182587	PRK10612, PRK10612, chemotaxis protein CheW.	3.60523e-61
NZ_CP014274.1\|WP_156455812.1\|2230334_2231078_+\|pilus-assembly-protein-PilZ	gnl\|CDD\|377813	pfam07317, YcgR, Flagellar regulator YcgR. This domain is found N terminal to pfam07238. Proteins which contain YcgR domains are known to interact with the flagellar switch-complex proteins FliG and FliM. This interaction results in a reduction of torque generation and induces CCW motor bias.	2.16175e-25

>NZ_CP014274.1|WP_082746714.1|2239821_2241393_-|TolC-family-protein
MSVKVLQGKTLIATYGNTYPEFGHGKRLYFGYSGTPGDRLEISFDAASKVSFTTDYLHRPATYEFYDIYGNHLATQGFDGIPQGYAVSYTANPGVLIGSVVAYTTEWGFLDNFEFSRAGIPTLVDDAQTKYVNQANFSYQGDARDEIFVVSEIAAISTSSVHGNGGIDTLRLNTTGKVLDMKALGDGDWVQKAVLVIDGVNYNTYQHSSLDVEVLVKKELTVAVTNPKAVGTGISIAGDTDIAATGPVLAQAGEDLFAQDSALTSSAVPVIPGGIALHTQGLGADPLELHHVNDVTSNLIELSKQRIIVVTSQRYVDRMAELVKMLEGIVAVDSGRVSELTQARARLLQAEASRSLADSKARDIEINLRRMVGERTLPTLPGSQYWEMRMPELSWLLGESIHHPTVLQAKASARSADMQADAVRSALRPQVNWVVSKNTGEDIYGRESAWQTGLTLSWSAFRGGSGRAAEQAARQRAQAGWMGAEQQVQDLEYRIRAANQDARSLADRADLYRGLALEPESVV
>NZ_CP014274.1|WP_062167765.1|2238709_2239765_+|chemotaxis-response-regulator-protein-glutamate-methylesterase
MTLQAPCRVLIVDDSAVVRQVLTEILSADPAIEVVGTAADPLLAREKIKRLNPDVLTLDVEMPRMDGLAFLENLMRLHPLPVVMVSSLTERGADTTLQALALGAVDFVSKPKFDVARGLDAYAEEIRSKVKMAARSRVRAIGSAPRRPLPQAASPAHIGFRTTDRLIAIGASAGGTEALRVVLEAMPADAPAIVMTQHLPASFSTAFAERLDRHSAMSVREASDGEAILPGHAYLPAGGRHLRVIRDGARWRCRVDDSAPVNLHKPAVDVLFRSVASSAGANAIGAILTGMGEDGARGLLEMKQAGAPTLAQDEASSVVWGMPGSAVRLGAADEVVALDRIAERILALARG
>NZ_CP014274.1|WP_062167763.1|2238113_2238713_+|chemoreceptor-glutamine-deamidase-CheD
MRSPQQHPDEVMRYRDTRFQTIAAKLLPTQYLVVDDDTALTTILGSCVAACIRDPILGIGGMNHFLLPEGNIGDGAPARYGSYAMELLINDLLKRGAHRKRLEAKVFGGANVLKGFTSNPVGTRNAEFVRQYLHAEHIPIVAEDLCGIHPRKIWFFPITGRVVVQRLPHAHDAEVAATESAIRARLSRTPVSGGVELFE
>NZ_CP014274.1|WP_062167761.1|2237271_2238117_+|chemotaxis-protein-CheR
MSIPSSAERDFEFSDRDFRRVCELIHTRAGIALAPAKRDMVYGRLSRRLRVLGLRSFKDYLDQLESQDGDEWQAFTNALTTNLTSFFREPHHFDKLREELQMRAPRAPLKLWSCAASTGEEPYSMAITACEAFSSMTPPVRIIATDVDTQVLATASQGVYAMDRIAGLDPALKRRYFQRGSGPNEGKCRVLPALRSLIEFRPLNLLSNRYDVGGPFDALFCRNVMIYFDKPTQRGILSRLVQHMDEDSLLYTGHSENYLHAADLIQPCGRTLYRRSRRNGA
>NZ_CP014274.1|WP_062167760.1|2235090_2237256_+|HAMP-domain-containing-protein
MNIQQLWSNYISNISVRRKLNLLTVLIALGVIALAVLSARMQYLDLIETRKLSLSNRVELGKTVLANFHARAKAGELSDAEARQQALAVLATMHSDSGGASFEVYGEDNTMLMHPFDKSMVGKQLSQFADSNGVRMYEEQVKAARNGGGFVHYLVKDPAAQGSIEQISYATAFAPWKMVVSSGAYLNSSLTYALRFTGVMTLAGGVLILLVIALNWLIGSRIVVPLRSATGIAKAIAGGRLDNVIPPPSKDETGQLLSSMRDMQHQLHAVIEAQNEMARQHDAGFISYRIDPAAFPGEYGVMVSETNTLVATHIGVKMDVIALAQRYAVGDLSQDMADLPGEKRVITDTMAAIKRNLGAINTQIKQLATAAAAGDFSQRGDEARFEHDFQAMVRSLNAMMRNSDQNLGQISGLLRALADGDLTVSMQGQFQGVFAQMRDDASRTMAQLGAIVAGIQQSAHNINVSAGEITTGNTDLSQRTEMQAANLEETAASMEELTSTVRQNAESARQANQLAIGAASVATRGGQVVDDVIITMGHIEQASRRIADIISVIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAGAAKEIKGLIDDSVSKVTEGSQLVQQAGTTMDEIVSSVQRVTSIIGEISAASQEQTVGIEQVNQTVIQMDETTQQNAALVEEAMAAARAMEDQALVLNQAVAVFRLQQTPVRAPHADSASLALAS
>NZ_CP014274.1|WP_062167759.1|2232600_2234982_+|HAMP-domain-containing-protein
MQWINSLKLKPKLMLTFGVVLFVMLLQGIVAYRGLHSLNNATTDLAEKRMPSLRTNGELSGMVSEYRNASYQSLIRASDDVKADAKARATELRMQIDTAIAAYPKLIDNPEQKKLFDTFVADWSKTAASYDAVSEMLALDLPDDAIDTFVGETRDLHRKAYSALQAMAANDNLRAQAAAKQAAETYRSSALVGIIAVLLGGAAGLVLVWLFARSLVAAMRGAVDVANEVASGKLDGSIDVSRADEVGDLLRAMQRMQRDLRERIERETVIANENLRIRTALDYSSTGVFLTNNDLEIVYANRALLDKLSEHQQQFSSTLTDFDASKPLIGQPVTVLEHRGEVDGKVMEALEKTGVFKREMRFGEAEFAQTISVIRDDNNQPVGHVVEWRDRSTEAQVEKEVARIIEAAAAGDLSGRIGTADKDGFFLQLASQINGLLDANASSLEQISALLSALSRGDLTVRMHGDYQGVFATMRDDANATAEQLTGIVGRIKHSSVSINSAATEIAAGNNDLSRRTEQQAANLEETAASMEELTSTVRQNAESARQANQLAIGAASVASQGGEVVSQVVTTMTQIEQSSRKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIKGLIDDSVGKVADGSALVRKAGTTMGEIVASVQRVTDIMAEISAASQEQSAGIEQVNQTIVQMDETTQQNAALVEEATASARSMEEQAAQLASVVSVFLLDQDDEADVVASTSVAKREPLQRSAPARTPAPAPRRRANAPTAVAELADSDWQEF
>NZ_CP014274.1|WP_152984538.1|2232211_2232517_+|hypothetical-protein
MIPPESAARFAGKDGMVCGKVEKARYAEGSEGQPTFLHMGGMFPRHTFSARIAGSNRSKFGFPLETLEGKTVCVIGKIQRDASRAEIEVASPANLKLANIK
>NZ_CP014274.1|WP_062167758.1|2231517_2232009_+|chemotaxis-protein-CheW
MNDSRSTAPDSTGGEYLSFTLGNEHYGVDILKVQEIRGYDAVTRVPDAPDYIKGVINLRGTIVPVIDLRLKLRLDEARYDAFTVMIVLNVEDRVVGIVVDSVSDVIPLNADQIRPTPEFGAAVDTRFISGIGTQDDRMLILLDIETLLDTADLGQPSTAEEAA
>NZ_CP014274.1|WP_156455812.1|2230334_2231078_+|pilus-assembly-protein-PilZ
MPSPHAGKLYADDRYMVRNPHQVRHLLQGMIDQRSMVNVHPDGRDQSFPSAVLEVDMQGLMLDASPVPSINRAVETASTLLCFGQVDKVMVRFQLHGPRRVERGDHVAFEVPLPEEVYHLQRREFYRLETPVGDSPYCVLPDPDGGEPSRWRVLDISAGGIALLLPPEQNLLKLQSRYNGCVLEIPEGGSVKTPLVVCNLRQQKQPNGAEMTRIGLRFDDLPRGADNIIQRYIFRIDRLRKARSNGD
>NZ_CP014274.1|WP_062167755.1|2229217_2229970_-|methyltransferase-domain-containing-protein
MSREAADQFDQLGALYEDMATWPFRKYIETPSVFAALGSLDGLDVLEYGCGSGYYSRLLKRAGARTVVGYDLAEGMLDYARRCAQRDGLDIDFRSALDETCRGNFDLVLAVYVLPYATTAPELEQMTAEMMAPLRPGGRLVALPIHPRYEPDPDYYAGCGFTLTPDDSAAPYQEGGRLRLDLRYRQYDASVHAWYWSQQAIEAGLRKAGAASIQWSNPSLVAGHDLAGVPPALQAYVDKPHAAIVECRKR
>NZ_CP014274.1|WP_082746552.1|2247553_2249587_+|ATP-binding-cassette-domain-containing-protein
MTDTPAPADEAAAMTKDQVNIEDTLLQSVSWMCDHYDMRRTPAALVAGLPWNGALSPSLALQALSNVGLTGGVVKRGLAQLPAQVMPMILLRKKQGGAVLLERREVRDEENKRQLRYTVIRFVRAHLLDVAAKKADLVLGAMLFRQALSVKMEHKPASSGAFANQLREFESVRDFATSATLAAISDLPFVLMFVGVIFAIGGPLGWIPLLILPLIVIISVSIQWPLARVMKENLRESSLKQGVLIESIEGMETLKSTGGSANMQRRWQHFSALQSATSMKSRRLSSIATGTVTLLQQLQTVVLVITGVYLITAGTLSMGALIGTVMLAGRATAPLGQVIGLAVRFQQAKAALGSLNKLMEMPQDRDPAQDYLPVPNLSGQLSLKKIGFSYPAPPMQPNPPVLTDISLSIAPGERVAILGRIGSGKSTLLRVMSRLYSPTEGQMFTDGLDVNQIDPADWRKAVGFVNQEARLFHGTLRENVMLGCPDASVDEFLRVLRLTGLDQFAAAHPRGVNLPIGENGDGVSGGQRQLISLARTLLARPRLLLMDEPTSAMDAQTEAQFLEHLHRATQGQTLVVVTHRPSLLNLVDRVIVMDNGRVFADGPKANVLAALGANAEKQNAEKPAAAQDRPQAAAATSATATAATSNAVTVAAQAPAPSIQAAPIRVRHTKTPQQEAH
>NZ_CP014274.1|WP_062167768.1|2249586_2250828_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MFPWKKDRKQAGSINAADAAFMDDVSESLLAQTTPGSRLVTYMILLVVVIGVTWAHFARVEEITKGEAKIVSKSREQVIQSLEGGILAEMSAHEGDIVESGQVLLKIDPTRANASYREALSKAISLKATIARLRAEAYGEPLVFDEQVSQFTDEVASETRAFNARRRSLEEGIASLEQSYALSMREINLAQPLAAKGLLSDVELLRMRRQANDIRSQMVERRNRYRSDANSELVKLEMELSQTTENLVGRADVVERTTITAPVRGTVKNVRVNTVGGVIQPGEHILEIVPLEDQLLVEGKIRPSDVAFLRPGLPAKVKITAYDYGIYGGLDGKVELISPDTLKDEEKGGAGRPDSTYYRVTVLTEKSALQAGGKELPIIPGMIASVEIRTGEKTVLEYLLKPVLKAREAFRER
>NZ_CP014274.1|WP_062167769.1|2251523_2254115_-|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase
MLEAYRHHVAERAALGIPPLPLTAQQTADVIELLKNPPAGEAEFLLDLITHRVPAGVDDAAKVKASYLAAIAFGSEKNALISRARATELLGTMLGGYNVAPLIQLLDDAEVGAIAASGLKHTLLVFDAFHDVQEKAKAGNAHAQGVLQSWADAEWFTSKPEVPQSLTITVFKVPGETNTDDLSPAPDATTRPDIPLHALAMLKNKRPDAPFVPEEDGKRGPIQEILSLKEKGNLVAYVGDVVGTGSSRKSATNSVLWFTGEDIPFIPNKRFGGVCLGSKIAPIFYNTMEDAGALPIELDVSKMEHGDVVELRPYDGKALKNGEVIAEFQVKSDVLFDEVRAGGRIPLIIGRGLTAKAREALGLPVTDLFRLPVQPADTGKGYSLAQKMVGRACGLPEGKGMRPGTYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVKTHHTLPEFISTRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPVGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGVTLRDLVNAIPLYAIKSGLLTVAKAGKKNIFSGRILEIEGLPDLKVEQAFELSDASAERSAAGCSVHLNKEPIIEYLNSNITLLKWMIAEGYQDARSLARRIEKMEAWLANPELLQGDADAEYAAVIEIDLADIHEPIVACPNDPDDVKTLSEVAGAKIDEVFIGSCMTNIGHFRAAAKLLEGKRDIPTRLWVAPPTKMDASELTKEGVYGTFGAAGARMEMPGCSLCMGNQAQIREGSTAMSTSTRNFPNRLGRNTNVYLGSAELAAICSRLGRIPTKEEYMADVGVLDAAGSEIYRYMNFDQISDYKDVADSVNA
>NZ_CP014274.1|WP_062167770.1|2254153_2254552_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MIAVDSPVLIELLSDGPRADAVEACLRQALIGGRVVICGTTLAEICASLRGGAEVQEALEEMGVHFNPLEAKSALRAGEMHRRHRQRSGETRRIDDFMVGAHALLQCDGLITWNDTFYRDYFKGLKLIVPQS
>NZ_CP014274.1|WP_062167771.1|2254548_2254782_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MEATVAERGQITLPKAVRDALGLTKGTQLKVELEGSRIILRKSVDDAISRARGKFALDGFESAEQAVRTVRDEADPA
>NZ_CP014274.1|WP_062167773.1|2255062_2257828_+|aconitate-hydratase-AcnA
MSDTFSTRSQLEVGGQQYTYCSLPKLGQKFDISHLPYSMKILLENLLRHEDGGQTVGPDHIEAVARWNPKAEPDTEIAFMPARVVLQDFTGVPCVVDLAAMRDAVTKLGGNAAQINPLIPSELVIDHSVQVDVFGRPDALDLNGKIEFERNRERYSFLRWGQKAFENFKVVPPNTGIVHQVNLENLAPVVMERQIDGTNWAFPDTVFGTDSHTTMINGIGVLGWGVGGIEAEAAMLGQPSSMLIPQVVGFKLTGKLPEGTTATDLVLTVTQMLRKLGVVGKFVEFYGEGLQHLPLADRATIANMAPEYGATCGIFPIDAESLTYLRLSGRSEAQINLVEAYAKAQGLWHDANSAHAQYSATLELNMGDVKPSMAGPKRPQDRVLLEDVHSNFAEALTTLTANRKSKVGCAVQEFDEEGGDQPQAKRLAAKPISKIRINDEDTELSDGSVVIAAITSCTNTSNPAVMLGAGLLARNAARIGLKAKPWVKTSLGPGSRVVTDYLEKAGVLTDLEKLGFFVVGYGCTTCIGNSGPLPEAVSAGIAENELVVASVLSGNRNFEGRVHPEVKANYLASPPLVVAYAIAGTVNIDLTTQPLGKGSDGKDVYLRDIWPSNKEIGDTIAATVGPEMFKQNYADVFKGDSRWAQIESPEGQAYAWSGDSTYIKNPPYFDGMTMQVGTISDIHGARVMGLFGDSITTDHISPAGNIKKDSPAGRFLQSRGVQPADFNSYGSRRGNDDVMVRGTFANIRIKNLMFGGEEGGNTLYYAPGSTTGEKLAIYDAAMKYKADGVPLVVMAGKEYGTGSSRDWAAKGTNLLGVKAVIAESFERIHRSNLVGMGVLPLQFHEGENAQTLGLDGSEVFDITGLDDGKAKSATVTATKADGSRKTFTTKVLLLTPKEVEYFRNGGLLQYVLRQLAGKKAA
>NZ_CP014274.1|WP_062167774.1|2258195_2258648_-|nuclear-transport-factor-2-family-protein
MIRTVFNGVLCAVIMLLLAACGRELPEQRLRTTFAAMQENVEAGKPGAFMDAVAPDFVGNQGLDRAGLERLLRGQLLLNAKVAIQTGPLRVEMGEGGTATVRFTVLLTGGSRGLLPERGQMQEVVSGWREQDGEWQVYSADWGPVGGEGG
>NZ_CP014274.1|WP_062167775.1|2258753_2260436_+|long-chain-fatty-acid--CoA-ligase
MTQERPWLQSYPAGVPAEIDVNEFHSVADVFNASVAKFRDRPAYSNFGKVLTYGEADVLVTQFAAYLLGELQLKKGDRVAIMMPNCLQYPIAIFGILRAGLTVVNVNPLYTARELKHQLADAGVSVLLVVDNFGDTVQQVIADTPVKQVITTGLGDMLGFPKGPIVNFVLKYVKKMVPDYDLPNAIRFKDALKLGKSHSMPVVEVDHEDIAFLQYTGGTTGVAKGAMLTHRNLIANMQQASAWIGASGVKPGEEVIITALPLYHIFALTANGLVFMKLGGLNYLITNPRDMKGFIKELKNNRFTAITGVNTLFNGLLNTEGFDEVDFSNLKFALGGGMAVQRAVADKWKKVTGVTLVEAYGLTETSPAACINPLDLKEYNGAIGLPIPSTDACVKNDDGQMVAMGEVGELCIRGPQVMKGYWHRPDETEKVMDAEGWLHTGDMARMDENGFFYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGAPSEKSGEVVKVVIVKKDPNLTEEQVKEFARANLTGYKHPRIVEFRKELPKTNVGKILRRELRDAKPEA
>NZ_CP014274.1|WP_062167776.1|2260925_2262449_-|calcineurin-phosphoesterase
MRPSLLTAVLLACVPFAASASCLQGAVFLDRNGNGQQDAGEQPLAAIRVSDGQHIVSTGKDGRYQLPASSQPNVFLIKPAGYSAAQRYDGLPDVWRPQAGEGDAQCRSFALMPDKSAPSSFQALLLADSQTSNALDVSYFERDIIEPLRGKHQARLGMTLGDITNDDPSLYPALTKAVTSLGVPWLHVPGNHDMDLGASTDANSLDSYHRVLGPDTYAWEEASMVFIGLDDILAQPGQKPAYIGGLREDQFAFLEAYLPTIPKDKLVVLGFHIPLFDHVYRAEDRARLFKLLEQVPHPLIVSGHTHNQSQKFWGAQDGWNGTKPLHEYNVGAACGAFWSGVKDAQGIPDTTMADGTPNGYGLLNIRPHGQYSVEYRVARVPADQQIALHAPKVLRQGAYPAWGIYANVFMGYAGLPVEFRVDDGQWQPMKQVEQPDPRLLVENIADDLADTLRGYDRSPEAVPSSHLWRGALPTKLAEGEHAVEVRTVLNGVEYRSQASYRLQSATP
>NZ_CP014274.1|WP_062167777.1|2262702_2263341_-|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE
MSTEFKPVDPAALDWEKVNGMMPVIIQDEATLRVLMLGYMDREALDSTRDSGKVTFFSRSKKRLWTKGETSGNHLDLVDIRSDCDNDTLLVTVRPHGPTCHTGSSSCFSAAPGNFLGALDALIRQREHDRPLNSYTTKLFEKGARHIAQKVGEEGVETALAGVVQRDDELLGESADLLFHLIVLLRARGLSLDDAVAVLEDRHAKAAEKAAS

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Crispr_ID: NZ_CP014274_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_14

2447402-2447473

Orphan

Consensus_repeat	Method
TGCCGAGCATGGCTCGGCACTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014274_14

>merge|NZ_CP014274|14|2447402-2447473|CRISPRCasFinder
TGCCGAGCATGGCTCGGCACTACATGCCCATTTCTGCGGGGAAAGCCTCTGCCGAGCATGGCTCGGCACTAC

>NZ_CP014274|14|13|2447402-2447473|CRISPRCasFinder
TGCCGAGCATGGCTCGGCACTAC	ATGCCCATTTCTGCGGGGAAAGCCTC
TGCCGAGCATGGCTCGGCACTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062168074.1\|2453859_2455203_+\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NZ_CP014274.1\|WP_062168068.1\|2449278_2449530_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062168050.1\|2440739_2441417_-\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	unknown	unknown	gnl\|CDD\|178974
NZ_CP014274.1\|WP_062168054.1\|2442374_2442914_+\|Smr/MutS-family-protein	unknown	unknown	gnl\|CDD\|225396
NZ_CP014274.1\|WP_062168056.1\|2443134_2444226_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP014274.1\|WP_062168080.1\|2458261_2458627_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062168063.1\|2445841_2447134_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP014274.1\|WP_062168070.1\|2449687_2451577_+\|DNA-topoisomerase-IV-subunit-B	unknown	unknown	gnl\|CDD\|235501
NZ_CP014274.1\|WP_057628278.1\|2452956_2453583_-\|DUF47-family-protein	unknown	unknown	gnl\|CDD\|224310
NZ_CP014274.1\|WP_062168061.1\|2445464_2445836_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP014274.1\|WP_062168046.1\|2439335_2440109_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|236782
NZ_CP014274.1\|WP_062171593.1\|2457240_2457996_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|235405
NZ_CP014274.1\|WP_062168072.1\|2451822_2452944_-\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
NZ_CP014274.1\|WP_062168078.1\|2456131_2457127_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
NZ_CP014274.1\|WP_062168052.1\|2441413_2442193_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP014274.1\|WP_156455964.1\|2444769_2445465_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP014274.1\|WP_062168065.1\|2447482_2449147_-\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NZ_CP014274.1\|WP_062168076.1\|2455186_2455861_+\|exopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|368723
NZ_CP014274.1\|WP_062168048.1\|2440105_2440720_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|224159
NZ_CP014274.1\|WP_062168058.1\|2444222_2444723_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|376811

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062168074.1\|2453859_2455203_+\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	2.27433e-133
NZ_CP014274.1\|WP_062168050.1\|2440739_2441417_-\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	gnl\|CDD\|178974	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase.	4.91459e-85
NZ_CP014274.1\|WP_062168054.1\|2442374_2442914_+\|Smr/MutS-family-protein	gnl\|CDD\|225396	COG2840, COG2840, Uncharacterized protein conserved in bacteria [Function unknown].	4.30875e-47
NZ_CP014274.1\|WP_062168056.1\|2443134_2444226_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	1.34312e-150
NZ_CP014274.1\|WP_062168063.1\|2445841_2447134_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP014274.1\|WP_062168070.1\|2449687_2451577_+\|DNA-topoisomerase-IV-subunit-B	gnl\|CDD\|235501	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.	0
NZ_CP014274.1\|WP_057628278.1\|2452956_2453583_-\|DUF47-family-protein	gnl\|CDD\|224310	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism].	3.53274e-07
NZ_CP014274.1\|WP_062168061.1\|2445464_2445836_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.808e-49
NZ_CP014274.1\|WP_062168046.1\|2439335_2440109_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|236782	PRK10871, nlpD, murein hydrolase activator NlpD.	4.82571e-58
NZ_CP014274.1\|WP_062171593.1\|2457240_2457996_-\|sulfurtransferase	gnl\|CDD\|235405	PRK05320, PRK05320, rhodanese superfamily protein; Provisional.	3.06066e-153
NZ_CP014274.1\|WP_062168072.1\|2451822_2452944_-\|inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	2.70835e-94
NZ_CP014274.1\|WP_062168078.1\|2456131_2457127_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP014274.1\|WP_062168052.1\|2441413_2442193_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	8.27191e-146
NZ_CP014274.1\|WP_156455964.1\|2444769_2445465_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	7.45398e-100
NZ_CP014274.1\|WP_062168065.1\|2447482_2449147_-\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP014274.1\|WP_062168076.1\|2455186_2455861_+\|exopolysaccharide-biosynthesis-protein	gnl\|CDD\|368723	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD. Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion.	2.99757e-41
NZ_CP014274.1\|WP_062168048.1\|2440105_2440720_-\|DedA-family-protein	gnl\|CDD\|224159	COG1238, COG1238, Predicted membrane protein [Function unknown].	2.41484e-22
NZ_CP014274.1\|WP_062168058.1\|2444222_2444723_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|376811	pfam02542, YgbB, YgbB family. The ygbB protein is a putative enzyme of deoxy-xylulose pathway (terpenoid biosynthesis).	4.35383e-100

>NZ_CP014274.1|WP_062168063.1|2445841_2447134_-|phosphopyruvate-hydratase
MTNIAKIHAREILDSRGNPTLEAEVTLADGSFGRAAVPSGASTGTKEAVELRDGDKTRYLGKGVRNAVNNVNGAIATALAGFNAEDQQGLDRRLIDLDGTENKGRLGANALLGVSMAAAHAVAASRKQALWQYLAAKTGAVPSLPVPMMNIINGGAHADNNVDFQEFMVLPVGFSSFSESLRAGTEIFHALKSVLKSHGLSTAVGDEGGFAPDFRSNVEALDTILEAIGKAGYNAGEDVLLGLDVASSEFYENGKYNLVGENKRLTSDQFVDFLADWAAQYPIISIEDGLAENDWAGWKLLTQRIGNKVQLVGDDLFVTNPKIFAEGIESGTANAILIKVNQIGTLTETLEAIAMADKAGYAAVVSHRSGETEDTTIADIAVATTATQIKTGSLCRSDRVAKYNQLLRIEEALGSGARYAGRDAFVSLKR
>NZ_CP014274.1|WP_062168061.1|2445464_2445836_-|cell-division-protein-FtsB
MRNWRWLLLVLAVLLALLQYRFWFGQGNSGEVMMLEAQVANQKRDNDGLQQRNDSLAAEVQDLKDGEAAIEERARSELGMIKPGEKFYRVVENAPVAAPVVPAPAVQTPAGQGNQQSPPENVP
>NZ_CP014274.1|WP_156455964.1|2444769_2445465_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MVPTWAVVPAAGRGARFGGPLPKQYLLADGEPLLAHALQSLLAHPGVAGVMVAIAENDADWPGWTSFADKPVLTCVGGQTRAASVLAGLQALPDSVRADDFVLVHDAARPNLAAVDLSRLLEVGRADPVGAILAAPVRDTLKRAGDDGGIDRTEPREHLWRALTPQLFRRHQLTRALLDAAAAGVDVTDDAMAMERQGVRPLLVEGAESNFKVTTPADLARFEFELSQRGS
>NZ_CP014274.1|WP_062168058.1|2444222_2444723_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MNSSVCFPPIRIGQGYDVHAFGEGDHIMLAGVRVPHSRGVLAHSDGDVALHALCDALLGALALGDIGVHFPPSDARWKGADSSRFVTHCNELLRERGWQVGNVDITVICERPKVGPHALAMRQKVAQLLEIDLDRVSIKATTTEKLGFTGREEGIAAQAVALLVAA
>NZ_CP014274.1|WP_062168056.1|2443134_2444226_-|tRNA-pseudouridine(13)-synthase-TruD
MNALPLAFGAPLLTAAIRSVPEDFQVDEIPAFEATGEGEHLLLDIRKRNANTVAIAKQLAQWAGVPEMGVSYAGQKDRHAVTTQRFSVHLPKRVAPDLALLESDELHVLASTWHNRKLQRGALAGNRFKLVLRGVQGDKAAIEERLQIVAARGLPNWFGEQRFGRDGGNVPAALQMFAGRRVRKDQRSMLLSAARSALFNRVLAARVEQGSWDSALDGEVWMLDGSRSVFGPEPMNDVLAERLGRFDIHPSAPLWGVGELRATGGALALEEQALADEQAMALRAGLEQAGLKQERRSLRLKPSLMQHQWLADDVLEVAFALPPGCYATAVLHELGEVSDASRNEIAGSAPVEAEAPSAEDAAD
>NZ_CP014274.1|WP_062168054.1|2442374_2442914_+|Smr/MutS-family-protein
MSYPDDEDDAALFRSAIGEVTPIRPVEPAVTGKPKPKPRARMAERDESEALGEFARLLRSNTPLEAGDSVSYRRDNLPPRMFQRLKRGQYSVQDELDLHGASAAQAENLLRQFLLEARAHEHGCVRIIHGKGLQSDGGAPVLKNLVDRMLRQRNDVLAFHSAPPTQGGTGAVLVLLANR
>NZ_CP014274.1|WP_062168052.1|2441413_2442193_-|5'/3'-nucleotidase-SurE
MRVLVSNDDGVDAPGIKMLAEELRNAGHEVTVVAPDRDRSGASNSLTLDQPVRLRRIDHYTCSVAGTPTDCVHLALTGMLEYEPDIVVSGINNAANLGDDVIYSGTVSAAMEGRFLGLPSVAVSLVTHKHEAKHFRTAARAAVEIVSRLIADPLPADTILNVNVPDLAWEDIRGFEVTRLGNRHRAEACIPATDPRGNTVYWIGPAGSEQDAGPGTDFHAVRTGHISITPIQVDLTRYSALEKVASWVGGLTDTLGKPE
>NZ_CP014274.1|WP_062168050.1|2440739_2441417_-|protein-L-isoaspartate(D-aspartate)-O-methyltransferase
MTARMRLQPEAVGIGMTSQRVRDRLVDRLREVGIADEATLNAVRVVPRHLFIDEALASRAYEDTALPIGHGQTISQPWVVARMTEVVLAVAPKKVLEVGTGSGYQAAILGALGLEVFTVERIGDLLRQARKRFRHLGMNIRTKHDDGRVGWAEHGPYDAIVVTAAAPALVDALIDQLAVGGRLVAPVGGPGGQVLLQLTRQADGTIAQEELAPVSFVPLLPGMLD
>NZ_CP014274.1|WP_062168048.1|2440105_2440720_-|DedA-family-protein
MKIFGPLYDRAMVWAANERAPTYLTVLSFIEAIIFPVMPEVMLMPMCVAQPRKGWRFATLSLAGSMAGAMVGYALGHYAFEALKPVFEALGMLPAIESGIATLQAKMAESPWAVFTFLVLGGFMPIPMKVFTWASGIVGVPLPQYVLSMLVGRGKRVYLLAAVIRFGGAKAAERLRRWIEPLGWIATALVVGLVAWLVWRAKFA
>NZ_CP014274.1|WP_062168046.1|2439335_2440109_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MNAMMVGKGLGRALAVMAVVSLAACGTATVVKPSGGSSGTSASTTPRTSVAKPGQTAVVRRGDTLFGIARINNITPRDLAAWNGLSEPYTIYPGQALRLYPGGATASRPATGGSATTTRPATTPPVATPTPVNSGIAWRWPAEGALVGRFVAGEATKQGVDIAGSSGQAVRAAGPGVVVYSGAGLVGYGELIIIKHNDQWLSAYGHNRKRLVNEGQSVKAGDQIAEMGRTGTSRDMLHFEIRYNGKPVDPLVYLPNR
>NZ_CP014274.1|WP_062168065.1|2447482_2449147_-|CTP-synthase
MTPLIFVTGGVVSSLGKGIAAASLASILEARGLKVTMMKLDPYINVDPGTMSPFQHGEVYVTDDGAETDLDLGHYERFIHNRLSRKNSVTTGRIYENVIRKERRGDYLGATVQVIPHITDEIRRCIDEATEGFDVALVEIGGTVGDIESLPFLEAIRQVRTERGPEKALFMHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDVLLCRSEQAIPDSERRKISLFTNVSERAVISVPDVEVLYRVPMGLHAQGLDEIVVNQLKLGDKAGPADLSEWEAVLDAALHPLDEVTIAVVGKYVDHQDAYKSVGEALKHGGLRQRTKVNLKWLEAQELEESGLAALEGVDGILVPGGFGDRGFEGKVLTSQFAREHNVPYFGICYGMQAAVVDFARNVAGLEGANSTENDRQSPNPVIGLITEWRTATGEVEKRDEKSDLGGTMRLGLQEQRLKPGTLARELYGKDVVAERHRHRYEFNNRYRTQLEDAGLVIAGKSMDDTLVEVIELPREQHPWFLACQAHPEFLSTPRGGHPLFIGFIRAAREKKAGGKLLQEARA
>NZ_CP014274.1|WP_062168068.1|2449278_2449530_-|hypothetical-protein
MKTTKLLALGVAVAAVAAIPFVMAQSADKGKADETAQAAPVDKAQSEAEQKAKRRAAAAAQDKAKADQPAPREEEEEEARRRR
>NZ_CP014274.1|WP_062168070.1|2449687_2451577_+|DNA-topoisomerase-IV-subunit-B
MNARYNAADIEVLSGLDPVKRRPGMYTDTARPNHLAQEVIDNSVDEALAGHAKTVEVTLFKDGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALSTLVEIHIRRDGSEHRITFRNGDRASPLEVVGSVGKKNTGTRLRFWADPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLTDEATGEVDTWYYEDGLRDYLKAELGEREMLPADLFYGSLKKETEIVDWAVAWLPEGELVQESYVNLIPTAQHGTHANGLRTGLTEALREFCDFRNLLPRGVKLAPEDVWDRVSFVLSLKMTDPQFSGQTKERLSSRQAAGFVEGAAHDAFSLLLNQNVELGEKIAQIAIERASARLKTEKLVTRKKVTQGPALPGKLADCISQDLSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAIGCDPGKDDLSGLRYGKVVILADADSDGLHIATLLAALFLRHFPSLVDAGHVFVAMPPLFRVDVGKQVFYALDEEEKRSMLDKIEREKIRGQVSVTRFKGLGEMNPSQLRESTIHPDTRRLVQLTVDDSEQTSALMDMLLAKKRASDRKGWLESKGDLASLEV
>NZ_CP014274.1|WP_062168072.1|2451822_2452944_-|inorganic-phosphate-transporter
MLTLVLVVIFAALVFEFINGFHDTANSIATVVATKVLSPGWAVMLAAGMNLIGALTGTAVALTIANGLLNTDVVAVTPQVILCALLGGIVWNLITWWKGLPSSSSHALIGGLCGAGLAAAHNNWDALIWSQNVGNWAQNKGLLWKVFVPMITSPIAGFLLGIVVMCLLWAIIAGMARVGGVLGRLARPRWVNAFFGKAQIVSAAYMGFAHGHNDAQKTMGIIAMTLIGAEASGALNDLPSWLAFMHPDANTGGGIAMWIVLTCAVVMAAGTASGGWKIIKTLGHKMVKLHPIHGFAAETSSATILTLAAHFGMPVSTTHSISTAIMGVGFAKNPKSLRLGVIERILWAWILTIPAAGGCAYLILRLFEMAGWN
>NZ_CP014274.1|WP_057628278.1|2452956_2453583_-|DUF47-family-protein
MFSLQTIFGSGKQFYTYLDEAAQAAYDGAKALHSMMREADRQPALDAFKLARLRERAASDKISQALVDSFMTPIEREDIEALGSALYKIPKQIEKFADRYSLAVQHLDQIDFAPRAAMLEQAAGVVVEMVNDLRHMNLDRMTALNEKLRSLENEADRLMLELYRDIYSGRLDNLQMFLLKEFFEILEKAIDRCREAGVVAYQIVLKNS
>NZ_CP014274.1|WP_062168074.1|2453859_2455203_+|HlyC/CorC-family-transporter
MFEFFIVLALILLNGFFAMSEMSVMTSRKSRLKQLAGSSKRAARALALSEKPENFLSTVQIGITLIGILTGVYGGDAIGGAIAQQLQAIFPALSANFSLFGAVQPWSDFLGKTLAVALITYLTLIFGELVPKRVALTRSEDIAGIVAVPMSWLARIAAPGVWLLSHSTRLVLRMLGLGKTESASVSEEEIRMLVAESHEQGVIDSHERDMMNRVMRLGDRTADSLMTPRNRIAWLDTNADPEKNLQAMRDHAFSRYPVYRGNDQDIAGILEVKSLVTRISGGSHNLFENLRETLYVSESTHAMKLLEIFREEHQSMALVVDEYGEIQGLVTISDLMGAVVGRLQATENTDDDALVITREDGSLLVDGSLPVDDLQELMNGAELPDAEEGDYYTLAGMCMHYFGRIPHAGEYFDWAGWRIEIVDLDGARIDKLLLCRLPEEDTDDITG
>NZ_CP014274.1|WP_062168076.1|2455186_2455861_+|exopolysaccharide-biosynthesis-protein
MTSPADPGGTAPDSARTAGGGYRNEGIRTLLAMFEQGDPDEHLPLGKVLQGLEQSAFGVFLFIAILPAFIPIPGIGGAVSSPLVFLIGIQLLFGMSRPWLPGFIARRGPKRSTVHRFLGKISRPLRRLDRMLKPRLQALIVPLPARMLTGVLLLLVGLLLSLPIPFTNYLFGFQLLLFSLALLERDGALMLFNWIAAITAGLFFGLGSGQLISESIALAQRWMN
>NZ_CP014274.1|WP_062168078.1|2456131_2457127_-|LLM-class-flavin-dependent-oxidoreductase
MIPLSILDLAPVCEGSTPRQAFANMLELAQHADRWGYHRYWLAEHHNMPGIASAATAVLIGHVAGATSRIRVGSGGVMLPNHSPLQVAEQFGTLASLYPDRIDLGLGRAPGTDQPTARALRRYFDSADQFPQDVAELLHYFAPVQPGQTVQAVPGGGIPVPVWLLGSSLFSARLAAQMGLPFAFASHFAPDAMDEALALYRRDFRPSEHLQQPYAILALNVVASDSEAESKRLFTSQQQAFVNLRRGTPGLIPAPVDDIEAFWAPHEKAGVERALACSIVGDAEQVAEGLVAFAERHRPDEMMLAANIHDPAARLQSFDLAMQAWQRVGAA
>NZ_CP014274.1|WP_062171593.1|2457240_2457996_-|sulfurtransferase
MIVNTAAYLFVPLADAEALTATLHERAKALELRGTILIAEEGINLFLAGSAEGIEDFYRQLKADARFADMRIKYSHSQMQPFARLKAKFKSEIISFRRDDGQPLDYPRAPSVAPATVQRWLRQGHDDEGKRVVMLDTRNWQEFAHGTFAGALTLPIAKFTDLPAALEPHREALADATVVSFCTGGIRCEKAALWMQNDGMHNVLQLEGGILGYFEEVGGEGYDGRCFVFDERVALDAQLQPLVDRQDELPG
>NZ_CP014274.1|WP_062168080.1|2458261_2458627_-|hypothetical-protein
MAKLLLNLRNVGDDESFEVGQLLDRNGIAWYRTEASPWGISSGGIWLRDNDDQPRAKALMATYQAERGQRVRDERQAALRDGTAETFGSMLRQRPGFVIAVLLGMLVAAALVLLPFFLLRG

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Crispr_ID: NZ_CP014274_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_15

2458113-2458188

Orphan

Consensus_repeat	Method
CTTACCCCTCCCCAACCCTCCCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014274_15

>merge|NZ_CP014274|15|2458113-2458188|CRISPRCasFinder
CTTACCCCTCCCCAACCCTCCCCTTGCCTTCGGCAAAGGGAGGGAGCAACCGCTTACCCCTCCCCAGCCCTCCCCT

>NZ_CP014274|15|14|2458113-2458188|CRISPRCasFinder
CTTACCCCTCCCCAACCCTCCCCT	TGCCTTCGGCAAAGGGAGGGAGCAACCG
CTTACCCCTCCCCAGCCCTCCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062168080.1\|2458261_2458627_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062168072.1\|2451822_2452944_-\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
NZ_CP014274.1\|WP_062171595.1\|2464391_2465801_-\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236430
NZ_CP014274.1\|WP_062168068.1\|2449278_2449530_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062168063.1\|2445841_2447134_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP014274.1\|WP_062168084.1\|2459102_2460335_+\|TIGR03862-family-flavoprotein	unknown	unknown	gnl\|CDD\|274820
NZ_CP014274.1\|WP_062168070.1\|2449687_2451577_+\|DNA-topoisomerase-IV-subunit-B	unknown	unknown	gnl\|CDD\|235501
NZ_CP014274.1\|WP_062168074.1\|2453859_2455203_+\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NZ_CP014274.1\|WP_062168078.1\|2456131_2457127_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
NZ_CP014274.1\|WP_062168089.1\|2462100_2463390_-\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|223749
NZ_CP014274.1\|WP_062168091.1\|2463757_2464192_+\|BLUF-domain-containing-protein	unknown	unknown	gnl\|CDD\|377423
NZ_CP014274.1\|WP_062168082.1\|2458687_2459119_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|223619
NZ_CP014274.1\|WP_062171593.1\|2457240_2457996_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|235405
NZ_CP014274.1\|WP_062168093.1\|2465904_2466291_-\|group-III-truncated-hemoglobin	unknown	unknown	gnl\|CDD\|381257
NZ_CP014274.1\|WP_082746566.1\|2466753_2467854_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|274278
NZ_CP014274.1\|WP_062168065.1\|2447482_2449147_-\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NZ_CP014274.1\|WP_062168076.1\|2455186_2455861_+\|exopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|368723
NZ_CP014274.1\|WP_062168087.1\|2460446_2462069_-\|FMN-binding-glutamate-synthase-family-protein	unknown	unknown	gnl\|CDD\|239202
NZ_CP014274.1\|WP_062168095.1\|2466478_2466766_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_057628278.1\|2452956_2453583_-\|DUF47-family-protein	unknown	unknown	gnl\|CDD\|224310

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062168087.1\|2460446_2462069_-\|FMN-binding-glutamate-synthase-family-protein	gnl\|CDD\|239202	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.	5.38455e-180
NZ_CP014274.1\|WP_062168072.1\|2451822_2452944_-\|inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	2.70835e-94
NZ_CP014274.1\|WP_062171595.1\|2464391_2465801_-\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236430	PRK09249, PRK09249, coproporphyrinogen dehydrogenase.	0
NZ_CP014274.1\|WP_062168091.1\|2463757_2464192_+\|BLUF-domain-containing-protein	gnl\|CDD\|377423	pfam04940, BLUF, Sensors of blue-light using FAD. The BLUF domain has been shown to bind FAD in the AppA protein. AppA is involved in the repression of photosynthesis genes in response to blue-light.	1.68704e-30
NZ_CP014274.1\|WP_062168063.1\|2445841_2447134_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP014274.1\|WP_062168084.1\|2459102_2460335_+\|TIGR03862-family-flavoprotein	gnl\|CDD\|274820	TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.	0
NZ_CP014274.1\|WP_062168070.1\|2449687_2451577_+\|DNA-topoisomerase-IV-subunit-B	gnl\|CDD\|235501	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.	0
NZ_CP014274.1\|WP_062168074.1\|2453859_2455203_+\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	2.27433e-133
NZ_CP014274.1\|WP_062168078.1\|2456131_2457127_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP014274.1\|WP_062168089.1\|2462100_2463390_-\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|223749	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane].	1.1664e-177
NZ_CP014274.1\|WP_062168082.1\|2458687_2459119_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	1.76495e-46
NZ_CP014274.1\|WP_062171593.1\|2457240_2457996_-\|sulfurtransferase	gnl\|CDD\|235405	PRK05320, PRK05320, rhodanese superfamily protein; Provisional.	3.06066e-153
NZ_CP014274.1\|WP_062168093.1\|2465904_2466291_-\|group-III-truncated-hemoglobin	gnl\|CDD\|381257	cd08916, TrHb3_P, Truncated hemoglobins (TrHbs, 2/2Hb, 2/2 globins); group 3 (P). The M- and S families exhibit the canonical secondary structure of hemoglobins, a 3-over-3 alpha-helical sandwich structure (3/3 Mb-fold), built by eight alpha-helical segments. Truncated hemoglobins (TrHbs, 2/2Hb, or 2/2 globins) or the T family globins adopt a 2-on-2 alpha-helical sandwich structure, resulting from extensive and complex modifications of the canonical 3-on-3 alpha-helical sandwich that are distributed throughout the whole protein molecule. They are classified into three main groups based on their structural properties and named after Mycobacterium sp. genes glbN, glbO, and glbP: TrHb1s (N), TrHb2s (O) and TrHb3s (P). TrHb3s include Campylobacter jejuni Ctb, encoded by Cj0465c, which may play a role in moderating O2 flux within C. jejuni.	2.96081e-43
NZ_CP014274.1\|WP_082746566.1\|2466753_2467854_+\|4Fe-4S-binding-protein	gnl\|CDD\|274278	TIGR02745, iron-sulfur_cluster-binding_protein, cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.	1.36505e-76
NZ_CP014274.1\|WP_062168065.1\|2447482_2449147_-\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP014274.1\|WP_062168076.1\|2455186_2455861_+\|exopolysaccharide-biosynthesis-protein	gnl\|CDD\|368723	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD. Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion.	2.99757e-41
NZ_CP014274.1\|WP_057628278.1\|2452956_2453583_-\|DUF47-family-protein	gnl\|CDD\|224310	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism].	3.53274e-07

>NZ_CP014274.1|WP_062171593.1|2457240_2457996_-|sulfurtransferase
MIVNTAAYLFVPLADAEALTATLHERAKALELRGTILIAEEGINLFLAGSAEGIEDFYRQLKADARFADMRIKYSHSQMQPFARLKAKFKSEIISFRRDDGQPLDYPRAPSVAPATVQRWLRQGHDDEGKRVVMLDTRNWQEFAHGTFAGALTLPIAKFTDLPAALEPHREALADATVVSFCTGGIRCEKAALWMQNDGMHNVLQLEGGILGYFEEVGGEGYDGRCFVFDERVALDAQLQPLVDRQDELPG
>NZ_CP014274.1|WP_062168078.1|2456131_2457127_-|LLM-class-flavin-dependent-oxidoreductase
MIPLSILDLAPVCEGSTPRQAFANMLELAQHADRWGYHRYWLAEHHNMPGIASAATAVLIGHVAGATSRIRVGSGGVMLPNHSPLQVAEQFGTLASLYPDRIDLGLGRAPGTDQPTARALRRYFDSADQFPQDVAELLHYFAPVQPGQTVQAVPGGGIPVPVWLLGSSLFSARLAAQMGLPFAFASHFAPDAMDEALALYRRDFRPSEHLQQPYAILALNVVASDSEAESKRLFTSQQQAFVNLRRGTPGLIPAPVDDIEAFWAPHEKAGVERALACSIVGDAEQVAEGLVAFAERHRPDEMMLAANIHDPAARLQSFDLAMQAWQRVGAA
>NZ_CP014274.1|WP_062168076.1|2455186_2455861_+|exopolysaccharide-biosynthesis-protein
MTSPADPGGTAPDSARTAGGGYRNEGIRTLLAMFEQGDPDEHLPLGKVLQGLEQSAFGVFLFIAILPAFIPIPGIGGAVSSPLVFLIGIQLLFGMSRPWLPGFIARRGPKRSTVHRFLGKISRPLRRLDRMLKPRLQALIVPLPARMLTGVLLLLVGLLLSLPIPFTNYLFGFQLLLFSLALLERDGALMLFNWIAAITAGLFFGLGSGQLISESIALAQRWMN
>NZ_CP014274.1|WP_062168074.1|2453859_2455203_+|HlyC/CorC-family-transporter
MFEFFIVLALILLNGFFAMSEMSVMTSRKSRLKQLAGSSKRAARALALSEKPENFLSTVQIGITLIGILTGVYGGDAIGGAIAQQLQAIFPALSANFSLFGAVQPWSDFLGKTLAVALITYLTLIFGELVPKRVALTRSEDIAGIVAVPMSWLARIAAPGVWLLSHSTRLVLRMLGLGKTESASVSEEEIRMLVAESHEQGVIDSHERDMMNRVMRLGDRTADSLMTPRNRIAWLDTNADPEKNLQAMRDHAFSRYPVYRGNDQDIAGILEVKSLVTRISGGSHNLFENLRETLYVSESTHAMKLLEIFREEHQSMALVVDEYGEIQGLVTISDLMGAVVGRLQATENTDDDALVITREDGSLLVDGSLPVDDLQELMNGAELPDAEEGDYYTLAGMCMHYFGRIPHAGEYFDWAGWRIEIVDLDGARIDKLLLCRLPEEDTDDITG
>NZ_CP014274.1|WP_057628278.1|2452956_2453583_-|DUF47-family-protein
MFSLQTIFGSGKQFYTYLDEAAQAAYDGAKALHSMMREADRQPALDAFKLARLRERAASDKISQALVDSFMTPIEREDIEALGSALYKIPKQIEKFADRYSLAVQHLDQIDFAPRAAMLEQAAGVVVEMVNDLRHMNLDRMTALNEKLRSLENEADRLMLELYRDIYSGRLDNLQMFLLKEFFEILEKAIDRCREAGVVAYQIVLKNS
>NZ_CP014274.1|WP_062168072.1|2451822_2452944_-|inorganic-phosphate-transporter
MLTLVLVVIFAALVFEFINGFHDTANSIATVVATKVLSPGWAVMLAAGMNLIGALTGTAVALTIANGLLNTDVVAVTPQVILCALLGGIVWNLITWWKGLPSSSSHALIGGLCGAGLAAAHNNWDALIWSQNVGNWAQNKGLLWKVFVPMITSPIAGFLLGIVVMCLLWAIIAGMARVGGVLGRLARPRWVNAFFGKAQIVSAAYMGFAHGHNDAQKTMGIIAMTLIGAEASGALNDLPSWLAFMHPDANTGGGIAMWIVLTCAVVMAAGTASGGWKIIKTLGHKMVKLHPIHGFAAETSSATILTLAAHFGMPVSTTHSISTAIMGVGFAKNPKSLRLGVIERILWAWILTIPAAGGCAYLILRLFEMAGWN
>NZ_CP014274.1|WP_062168070.1|2449687_2451577_+|DNA-topoisomerase-IV-subunit-B
MNARYNAADIEVLSGLDPVKRRPGMYTDTARPNHLAQEVIDNSVDEALAGHAKTVEVTLFKDGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALSTLVEIHIRRDGSEHRITFRNGDRASPLEVVGSVGKKNTGTRLRFWADPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLTDEATGEVDTWYYEDGLRDYLKAELGEREMLPADLFYGSLKKETEIVDWAVAWLPEGELVQESYVNLIPTAQHGTHANGLRTGLTEALREFCDFRNLLPRGVKLAPEDVWDRVSFVLSLKMTDPQFSGQTKERLSSRQAAGFVEGAAHDAFSLLLNQNVELGEKIAQIAIERASARLKTEKLVTRKKVTQGPALPGKLADCISQDLSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAIGCDPGKDDLSGLRYGKVVILADADSDGLHIATLLAALFLRHFPSLVDAGHVFVAMPPLFRVDVGKQVFYALDEEEKRSMLDKIEREKIRGQVSVTRFKGLGEMNPSQLRESTIHPDTRRLVQLTVDDSEQTSALMDMLLAKKRASDRKGWLESKGDLASLEV
>NZ_CP014274.1|WP_062168068.1|2449278_2449530_-|hypothetical-protein
MKTTKLLALGVAVAAVAAIPFVMAQSADKGKADETAQAAPVDKAQSEAEQKAKRRAAAAAQDKAKADQPAPREEEEEEARRRR
>NZ_CP014274.1|WP_062168065.1|2447482_2449147_-|CTP-synthase
MTPLIFVTGGVVSSLGKGIAAASLASILEARGLKVTMMKLDPYINVDPGTMSPFQHGEVYVTDDGAETDLDLGHYERFIHNRLSRKNSVTTGRIYENVIRKERRGDYLGATVQVIPHITDEIRRCIDEATEGFDVALVEIGGTVGDIESLPFLEAIRQVRTERGPEKALFMHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDVLLCRSEQAIPDSERRKISLFTNVSERAVISVPDVEVLYRVPMGLHAQGLDEIVVNQLKLGDKAGPADLSEWEAVLDAALHPLDEVTIAVVGKYVDHQDAYKSVGEALKHGGLRQRTKVNLKWLEAQELEESGLAALEGVDGILVPGGFGDRGFEGKVLTSQFAREHNVPYFGICYGMQAAVVDFARNVAGLEGANSTENDRQSPNPVIGLITEWRTATGEVEKRDEKSDLGGTMRLGLQEQRLKPGTLARELYGKDVVAERHRHRYEFNNRYRTQLEDAGLVIAGKSMDDTLVEVIELPREQHPWFLACQAHPEFLSTPRGGHPLFIGFIRAAREKKAGGKLLQEARA
>NZ_CP014274.1|WP_062168063.1|2445841_2447134_-|phosphopyruvate-hydratase
MTNIAKIHAREILDSRGNPTLEAEVTLADGSFGRAAVPSGASTGTKEAVELRDGDKTRYLGKGVRNAVNNVNGAIATALAGFNAEDQQGLDRRLIDLDGTENKGRLGANALLGVSMAAAHAVAASRKQALWQYLAAKTGAVPSLPVPMMNIINGGAHADNNVDFQEFMVLPVGFSSFSESLRAGTEIFHALKSVLKSHGLSTAVGDEGGFAPDFRSNVEALDTILEAIGKAGYNAGEDVLLGLDVASSEFYENGKYNLVGENKRLTSDQFVDFLADWAAQYPIISIEDGLAENDWAGWKLLTQRIGNKVQLVGDDLFVTNPKIFAEGIESGTANAILIKVNQIGTLTETLEAIAMADKAGYAAVVSHRSGETEDTTIADIAVATTATQIKTGSLCRSDRVAKYNQLLRIEEALGSGARYAGRDAFVSLKR
>NZ_CP014274.1|WP_062168080.1|2458261_2458627_-|hypothetical-protein
MAKLLLNLRNVGDDESFEVGQLLDRNGIAWYRTEASPWGISSGGIWLRDNDDQPRAKALMATYQAERGQRVRDERQAALRDGTAETFGSMLRQRPGFVIAVLLGMLVAAALVLLPFFLLRG
>NZ_CP014274.1|WP_062168082.1|2458687_2459119_+|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MRRLFIPLLLSLLAAGCTPPGPPPGGTIAKFEHIDTQPGTGAEAVPGSKVTVHYTGWIYDERSADKHGEKFDSSVDRGEPFSFNLGDKQVIRGWDEGVAGMKVGGKRTLMIPAEYGYGNRGVGPIPAGSSLVFDVELLDVKAR
>NZ_CP014274.1|WP_062168084.1|2459102_2460335_+|TIGR03862-family-flavoprotein
MSKLADKTVAVIGGGPAGLFAAERLRASGLKVNLYEAKGSPGRKFLIAGKGGLNLTHSDPRPLFDSRYRERQAEVATWLDGFDADALRRWAAELGVETYVGSSGRVFPVDRKAAPLLRGWVRRLKEQGVRFHVQHRWLGWSEDGGLRMATAEGEISVHADATVLAVGGGSWPELGSDGSWMPVLQQRGVDTAPLQPANCGFDIDWTPHFSSRHAGAPLKPVIAHWTDLQGQAQALQGECVVSQYGIEGSLIYALAADLRETLNRDGAVTLGLDLVPGRDEARLLADLGRDRKGRSFGEHLRRAAGLDAAKAGLLFEVLGKDAGSDLAAVARTLKRLPLSLLRPRPMAETISTAGGVRLEALDDGLMLKAQPGVFCAGEMLDWEAPTGGYLLTACYASGQRAAEGVERWLR
>NZ_CP014274.1|WP_062168087.1|2460446_2462069_-|FMN-binding-glutamate-synthase-family-protein
MHRYLVYVLALILLPVSLALATHWPAWYWGVGLFGLMALLGTWDVLQRRSVLRRNYPVLAHFRYGFESIGPEIRQYFVQSDLEDVPFSRQQRQLIYQRSRNEMDVVPFGTLRSAYAVDYEWINHSLAPTTIAHHDFRVVIGAECAKPYSASVFNISAMSFGSLSANAIRALNKGAKLGGFCHDTGEGSISPYHRENGGDLVWEIGSGYFGCRDDNGRFSEERFVANASSDQVKMIEIKLSQGAKPGHGGVLPAAKVSAEISATRGVPMGVDCVSPSKHSAFSTPIELLQFVVRLRELSGGKPVGFKLAIGHPWEWFGIAKAMLETGMMPDYIVVDGAEGGTGAAPAEFIDHVGVPMNEALILVHNTLVGLGLRDRIRLGAAGKVTTAFDIARTIALGADWCNAGRGYMFALGCIQSLSCHNDKCPTGIATQDPSRWRHLEPVDKGQRVFNYHQNTMRALRDLLGAAGLHDTSELGPEHILRRVSPVEIRSLASLYRYLAPGELLKKVPEHTVFREYWAEARSDSFTPPARIAALRTSKMC
>NZ_CP014274.1|WP_062168089.1|2462100_2463390_-|nucleotide-sugar-dehydrogenase
MSAEITAAAAPQIAIIGLGYVGLPLAVEFGKTLDTLGYDIDTARVAELQAGHDHTLELDDAELRAAVHVRYTSAAAELAARNVFIVTVPTPIDAYEQPDLAPLRSATALIASVLKRGDLVIYESTVYPGTTEEVCVPLLEQGSGLRFNHDFYCGYSPERINPGDRQRRLPDIKKITSGSTPEAAALVDGLYRRIITAGTWPASSLRVAEAAKVVENIQRDVNIALVNELALIFDKLGIDTLDVLEAAGTKWNFLPFRPGMVGGHCIGVDPYYLLHKSESVGYHPDLIHTARQVNNRVVAHVVTRVRGLLEDKNKSLQNARVLVLGVTFKEDCPDLRNSRGLDLVQMLAAAGAKVDAYDPWADPRNAHDLGGVSLVDAPQQGSYDAVVLAVAHQQFRALNAAQIRALGVPDMVVYDVKSAWPRQVVDDRL
>NZ_CP014274.1|WP_062168091.1|2463757_2464192_+|BLUF-domain-containing-protein
MPYRAIAYVSTAAGGLHTEDIDRLLVDARAHNQLAGVTGVLLYDGSRFFQYFEGPDQGVARIYARIQASRMHVQLEELFDENIEMTFFTQWHMGCTKIEGSILQKYSTGQWHREANFLLQGPHTGAPEILQDLVKFWEAASLRQ
>NZ_CP014274.1|WP_062171595.1|2464391_2465801_-|oxygen-independent-coproporphyrinogen-III-oxidase
MPLPTTSNALGWTFDADLLRRHDRPGPRYTSYPTAPHFHDGYGQAQFCAAVARSNAVGRPLSLYVHVPYCSSPCFYCGCNRVISRDRSKGERYVDQLLVEADWLAPLFAREREVVQLHLGGGTPNFLSPEQLRRLMDGLQRLFNFSQGSARDFSIELDPRSVSVDDIAVLAELGFNRASLGVQDFDPAVQQAINRVQAVDETMAIIQACRDNGMRSVNVDLIYGLPLQTLSGFGRTLDTVIDARPDRLAIYGYAHLPHMFKAQRQIQDRDLPDPEQKLALLGLAVERLSAAGYQYIGMDHFALPEEDLSQAQRAGSLHRNFMGYTTHADSDLLGLGVSAISHIDSSYSQNPRDLKEWEARIAEGGVPVWRGLELDCDDMLRAELIQQLMCHGRVDGHALARRHGVDFDLYFAEELVALRHLQDDGLASYNEGVVAATEQGRPLLRLIAMCFDRYLKAAQQPARYSRAIG
>NZ_CP014274.1|WP_062168093.1|2465904_2466291_-|group-III-truncated-hemoglobin
MVRAGPDVCSEQEVELLVRRFYARVREDALLGPIFEVRVHDWEEHLRQLVDFWSALLRGTSRFKGAPMPKHLAIPGLEWPLFERWLALFSQATAELGNPPMQALADEAAARVAGAIWRRYHTPSFPIL
>NZ_CP014274.1|WP_062168095.1|2466478_2466766_+|hypothetical-protein
MTDPAIQDSRRVLPMIQLLGAVAWPSFFTAAVMSAVFFAFIDPLQLQQISFPAHAISRELGYSLGFFMFWAGTLCACGVTALLLRPAREPEECFE
>NZ_CP014274.1|WP_082746566.1|2466753_2467854_+|4Fe-4S-binding-protein
MLRMRPVRSIGEASASPVRSRDSIRQLTTTAMLGAFYGLPWLHWNGKPWLLFDIDARQFQFAGVSMQPERSLPLLWLALAALALLALVTSLYGRLWCTYACPQTVLTRLFRKLTALTTFNGRLTPLGPPLRHALWAGIALWTGISFVGYFTPIADLVNGMLTLSLSGWEWFWISFYGLATWANVVYLHEQVCSYLCPYSRVQGLISDTRTPAIQYNAPRGEPRGPRPADNASVLHRSRGLLDATTAADYVFRAAHPAIAGAMPKFSAAHLGDCVDCGACVAACPIGLDIRNGRSSSCIECGNCMDACDDAMAANHYPLDLIRRARPANDGDVARSGIHIKPLAFAGIALLCIALAAFTAASLAGAA

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Crispr_ID: NZ_CP014274_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_16

2870843-2870937

Orphan

Consensus_repeat	Method
CGGCATCCTCTCCCGCAAGGGGAGAGGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014274_16

>merge|NZ_CP014274|16|2870843-2870937|CRISPRCasFinder
CGGCATCCTCTCCCGCAAGGGGAGAGGAAAGAGCACACGGCTGCGCCGCTCCCCTCTCCTGCCTCCGGCATCCTCTCCCGCAAGGGGAGAGGAAA

>NZ_CP014274|16|15|2870843-2870937|CRISPRCasFinder
CGGCATCCTCTCCCGCAAGGGGAGAGGAAA	GAGCACACGGCTGCGCCGCTCCCCTCTCCTGCCTC
CGGCATCCTCTCCCGCAAGGGGAGAGGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062168631.1\|2873208_2873619_+\|DUF1311-domain-containing-protein	unknown	unknown	gnl\|CDD\|226278
NZ_CP014274.1\|WP_062168623.1\|2867433_2867868_-\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|274650
NZ_CP014274.1\|WP_062171673.1\|2870145_2870613_-\|SET-domain-containing-protein-lysine-N-methyltransferase	unknown	unknown	gnl\|CDD\|380916
NZ_CP014274.1\|WP_156455850.1\|2861099_2861573_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319937
NZ_CP014274.1\|WP_062168637.1\|2875678_2876935_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
NZ_CP014274.1\|WP_062168633.1\|2873655_2874420_+\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|273907
NZ_CP014274.1\|WP_062168620.1\|2866604_2867330_-\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|183072
NZ_CP014274.1\|WP_082746584.1\|2862331_2864692_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP014274.1\|WP_062168618.1\|2864820_2866506_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|238625
NZ_CP014274.1\|WP_082746725.1\|2868796_2869099_+\|DUF3861-family-protein	unknown	unknown	gnl\|CDD\|372414
NZ_CP014274.1\|WP_057627263.1\|2871270_2871717_+\|SUF-system-Fe-S-cluster-assembly-regulator	unknown	unknown	gnl\|CDD\|131989
NZ_CP014274.1\|WP_062168639.1\|2877327_2877864_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP014274.1\|WP_062168643.1\|2878420_2878861_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062168641.1\|2877860_2878193_+\|non-heme-iron-oxygenase-ferredoxin-subunit	unknown	unknown	gnl\|CDD\|239604
NZ_CP014274.1\|WP_062168644.1\|2878986_2881278_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|227115
NZ_CP014274.1\|WP_156455849.1\|2860516_2861080_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062168627.1\|2869335_2869923_+\|DUF1439-domain-containing-protein	unknown	unknown	gnl\|CDD\|377799
NZ_CP014274.1\|WP_062168635.1\|2874419_2875682_+\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|273908
NZ_CP014274.1\|WP_062171671.1\|2868171_2868582_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|259856
NZ_CP014274.1\|WP_062168629.1\|2871736_2873212_+\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|236990

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062168631.1\|2873208_2873619_+\|DUF1311-domain-containing-protein	gnl\|CDD\|226278	COG3755, COG3755, Uncharacterized protein conserved in bacteria [Function unknown].	9.20026e-17
NZ_CP014274.1\|WP_062168623.1\|2867433_2867868_-\|OsmC-family-protein	gnl\|CDD\|274650	TIGR03562, osmo_induc_OsmC, peroxiredoxin, OsmC subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein OsmC, or osmotically induced protein C. The member from Thermus thermophilus was shown to have hydroperoxide peroxidase activity. In many species, this protein is induced by stress and helps resist oxidative stress. [Cellular processes, Detoxification].	1.06877e-72
NZ_CP014274.1\|WP_062171673.1\|2870145_2870613_-\|SET-domain-containing-protein-lysine-N-methyltransferase	gnl\|CDD\|380916	cd10518, SET_SETD1-like, SET domain (including post-SET domain) found in SET domain-containing proteins (SETD1A/SETD1B), histone-lysine N-methyltransferases (KMT2A/KMT2B/KMT2C/KMT2D) and similar proteins. This family includes SET domain-containing protein 1A (SETD1A), 1B (SETD1B), as well as histone-lysine N-methyltransferase 2A (KMT2A), 2B (KMT2B), 2C (KMT2C), 2D (KMT2D). These proteins are histone-lysine N-methyltransferases (EC 2.1.1.43) that specifically methylate 'Lys-4' of histone H3 (H3K4me).	3.92927e-38
NZ_CP014274.1\|WP_156455850.1\|2861099_2861573_+\|hypothetical-protein	gnl\|CDD\|319937	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the larger superfamily, this family contains members with or without domain swapping.	6.14389e-25
NZ_CP014274.1\|WP_062168637.1\|2875678_2876935_+\|cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_CP014274.1\|WP_062168633.1\|2873655_2874420_+\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|273907	TIGR01978, Probable_ATP-dependent_transporter_SufC, FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.02782e-145
NZ_CP014274.1\|WP_062168620.1\|2866604_2867330_-\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|183072	PRK11280, PRK11280, hypothetical protein; Provisional.	6.08077e-15
NZ_CP014274.1\|WP_082746584.1\|2862331_2864692_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	6.44497e-49
NZ_CP014274.1\|WP_062168618.1\|2864820_2866506_-\|amidohydrolase	gnl\|CDD\|238625	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.	2.03504e-160
NZ_CP014274.1\|WP_082746725.1\|2868796_2869099_+\|DUF3861-family-protein	gnl\|CDD\|372414	pfam12977, DUF3861, Domain of Unknown Function with PDB structure (DUF3861). The 3cjl structure is likely a representative of a new fold with some resemblance to 3-helical bundle folds such as the serum albumin-like fold of SCOP. No significant hits reported by a Dali search. This protein is the first structural representative of a small (about 60 proteins) family of proteins that are found among proteo- and enterobacteria (REF http://www.topsan.org/Proteins/JCSG/3CJL).	5.43523e-09
NZ_CP014274.1\|WP_057627263.1\|2871270_2871717_+\|SUF-system-Fe-S-cluster-assembly-regulator	gnl\|CDD\|131989	TIGR02944, conserved_hypothetical_protein, FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	1.76937e-61
NZ_CP014274.1\|WP_062168639.1\|2877327_2877864_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.4101e-11
NZ_CP014274.1\|WP_062168641.1\|2877860_2878193_+\|non-heme-iron-oxygenase-ferredoxin-subunit	gnl\|CDD\|239604	cd03528, Rieske_RO_ferredoxin, Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the insertions that give other Rieske proteins unique structural features are missing. CARDO catalyzes dihydroxylation at the C1 and C9a positions of carbazole. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.	2.03183e-35
NZ_CP014274.1\|WP_062168644.1\|2878986_2881278_+\|TonB-dependent-receptor	gnl\|CDD\|227115	COG4774, Fiu, Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism].	0
NZ_CP014274.1\|WP_062168627.1\|2869335_2869923_+\|DUF1439-domain-containing-protein	gnl\|CDD\|377799	pfam07273, DUF1439, Protein of unknown function (DUF1439). This family consists of several hypothetical bacterial proteins of around 190 residues in length. Several members of this family are annotated as being putative lipoproteins and are often known as YceB. The function of this family is unknown.	1.39886e-06
NZ_CP014274.1\|WP_062168635.1\|2874419_2875682_+\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|273908	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	3.91914e-87
NZ_CP014274.1\|WP_062171671.1\|2868171_2868582_+\|DNA-binding-protein	gnl\|CDD\|259856	cd13834, HU_like, DNA-binding proteins similar to HU domains. This subfamily consists of DNA-binding proteins similar to HU domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta).	4.24109e-28
NZ_CP014274.1\|WP_062168629.1\|2871736_2873212_+\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|236990	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional.	0

>NZ_CP014274.1|WP_062171673.1|2870145_2870613_-|SET-domain-containing-protein-lysine-N-methyltransferase
MPKKIQARKSSIHGNGVFAVADIKKGERVIEYKGKRRTHAEVDADDAGDVETGHTFLFTLNDDYVIDANYKGNDARWINHSCDPNCEAMIEEAEGDDRTADKVFIEAIREIKPGEELTYNYGITLAERHTPRLKKIWECRCGSPKCTGTMLQPKR
>NZ_CP014274.1|WP_062168627.1|2869335_2869923_+|DUF1439-domain-containing-protein
MNLRSLLLPSIALIALAGSAHAAPQINGKQLTVGAADVQQYLDGSFPRTQKALGGLLALTVSQPRLTLPQGSRLDLGFNLAMAAGGSSMPVGDVQISSGLRYDAQTQGFHLDQPTVDGFRPSTAGGGELDSSTRSLLNSWLADYARREPIYKIDPAIAKVMGVLQVKSVGIQNGRIAVDFNQNLGSFVPQGLLGN
>NZ_CP014274.1|WP_082746725.1|2868796_2869099_+|DUF3861-family-protein
MSKHRYRISVTPIETDGQQCSGRCSIEFEQRSQYNWMHQLESAQGQRRLSCNEDAGVVVVTGLLETLAESAAKPGNLLSVLQPELDQLLHKLQQLQTPAE
>NZ_CP014274.1|WP_062171671.1|2868171_2868582_+|DNA-binding-protein
MAKTAKKAAPKKAVKKVATKAATKTAAKPAAPKPIKEALTKSGLVAHIAEATSVAAKDVRAVFAALEGAVAASVNKKGAGSFTLPGLLKISTVSVAAKPKRKGINPFTKEEQWFAAKPATTKLKVRPLKKLKDAAL
>NZ_CP014274.1|WP_062168623.1|2867433_2867868_-|OsmC-family-protein
MGISRHATAHWEGDLKTGQGRLSTPQSGLMENTRYAFNSRFGDEKGTNPEELIAAAHAGCFTMALSAKLSEAGFPPTTLDTRADVDLSMEGGPQLSQIRLKVKAVVPGLDETRFRAIADDAKQNCPVSKALSAVPISLDTEFSA
>NZ_CP014274.1|WP_062168620.1|2866604_2867330_-|glycine-zipper-2TM-domain-containing-protein
MCRSLAVAAVLLAGGLGAFNASAQRYDDGQYRPDASYDDGQYRSERYDDGQYRPGQANGGSPVYDYARVVRVDPVIVGGGQGSNQRCYERNDGGYINGNNGYQAGGYGNNGYRNDGYDDRGQDNGQYRQGNETGRQLATVIGGLAGAVLGSRIGGGDGRYLGTAVGTIAGGAAGRAIYEASNRPTYQRGDVRVCEPTGYGSESERVDGYDVTYEYAGRQYHTHRDYHPGEQIRVRVDVSAD
>NZ_CP014274.1|WP_062168618.1|2864820_2866506_-|amidohydrolase
MRRIACVALLLPCLHALPAQAEVKVLVADTIRTGDAAQPVAGAMAWDSDTGRVLQVGSAEALRKAYPKAAALELGDATVVPGLIDAHAHIMGLGNTLMQADLSGARNRGEVVERLKAFEKTLAPGEWLLGRGWDQNRWDNTDFPTAADLDAAFPQRPLYLERIDGHAGWVNTAAIRVAEKAGKSLSGDWQPEGGRILRNADGSPSGVLVDGAAALVYGQIPALDDASREKRLQAALQAAVSNGLTGVHDMGVSREDLALMKRLADQGKLPLRIDAYADGNHAALEDLCKSGLYAHPGGRLQMRGVKLYMDGALGSRGAALLTAYSDDPHNHGLLMTSPEEFETAVRKADGCKVQVATHAIGDRGNRIVLDTYEKVLGAHKGDDHRWRVEHSQVVALDDIPRFAKLGVIASMQPTHATSDMGWAEQRVGPERILGAYAWQRFLHSGARLALGSDFPVEQVDPRLGLYAAVTRQDRDGKPPGGWQPDQRLSAAEALRGFTSDAAWAGHDEAQVGKLQRGLRADFVVLDRDPLKVAADQLDDLKVLSTWVDGEPVYKADETSGS
>NZ_CP014274.1|WP_082746584.1|2862331_2864692_-|TonB-dependent-receptor
MKGISMQFHPAASAFLRTARRSPRRSLLAQACALLVLPLAAQSALAQDAAPATTRPSATALDAVTVTAERREQNLQDVPVSVGVVQGEALRAYTEGADDTLLSLSGRVPSFYAETTTGRIFPRFYIRGLGNIDFYLGASQPVSIIQDDVVLEHVVLKSNPVYDVDQVEVLRGPQGSLFGRNTTAGIVKFDTAKPSQDPSGRVNVSYGSYNTVSIDGGMGGAINDVLSYRVSTLYQHRDDWVDNTYRGPSADGTVSPKNDTMGGYNDRNLRLQLLYKPNEQFSLLASAHTRDYEGTSTLFLRNALVKGSNRVDVARDKVAFDEADNNPQAYKTHGGSLKATYDFGNTTLTSISAYETTSGYSRGDTDGGAAADYPVNGLPNGYGQSMGQVQDLDQFTQELRLASNATDPWSWQMGAFYFDGRDTTDFYQRAWFLDTAAHNPNNWVRLRNINTSWAGFGQVSWKATDALTLTAGVRATKDEKHTRLLKTADTAAGVVTYKGRHDVQMSDTQPSWDLSAMYEISPELSLYARVARGFRGPTIQGRSAVFNADFTTADSETILSWEAGIKSSLLDNRLRLNVSGFTYTVNDIQLNGNDSNGNGVLFNADKARAYGLEADLDWRPIPNLSLTAGLSLLHSEIQDKRVYAQVCALNGVVVCTVNDPTIKIGSNVYAQIDGNPLPNAPKYNLNLAARYDIPVGDDGAVFFATDWNKQGETQFVLYDSKEFYSKGNFEGGLRVGYSGGYGAWEVAAFARNITNEKNLKGVIENYMAAVYNDPRIIGVSFNYNWR
>NZ_CP014274.1|WP_156455850.1|2861099_2861573_+|hypothetical-protein
MYFRIAEPALGPFPLPRMRLSLKPRLGSNVMAHVQFHSVSPFLAAEDLPATLAFYLDKLDFALAWEWGEPTELAAVCRDTVELTLASRADAKPGGISRLYLHIDGIDSYHAQLQSAGVAITVAIADRPYGMRDFSVTDPSGNVLCFGQPLPQPKGAA
>NZ_CP014274.1|WP_156455849.1|2860516_2861080_-|hypothetical-protein
MSFPVILARACLLLYLVLLCACASIPLSTALRLSSLDERALVQLEPAAIRIKVALPRGNTLNPEETRLVLRLQPDGEAAQVATMPLRLVGSSQGERSSGFFSPAVAVTTNDLALSTEGAAQLRELQREVMRLRSESGKVEISVNTSFSKIAEGTKEMRFWVDIKLRSNDAYMTLFDGAEIKFKMAEG
>NZ_CP014274.1|WP_057627263.1|2871270_2871717_+|SUF-system-Fe-S-cluster-assembly-regulator
MLRVTKLTDYATVVLTVLAARPAEVLSATDLAEAAGLEPPTVSKLLKPLAQAGLVEGLRGVHGGYRLTRPASEITLIEILEAMEGPLAITECSQEQSQCGLAGQCGVRSNWRLINDVVSDALRGVTLAQMLHPLPLADRRRISADVVS
>NZ_CP014274.1|WP_062168629.1|2871736_2873212_+|Fe-S-cluster-assembly-protein-SufB
MATEILENVGTTDSPNREIHEQLGRKYDAGFVTLIESESFPPGLDEDVIRALSAKKEEPEWMTQWRLDAYRHFLTMRQPDWAKLQIGPIDLQALSYFSAPKGPKYQSLDEVPKELLDTYEKLGVPLHERAKLAGVAVDAVFDSVSVGTTFRKELADKGVIFCSISEAIREYPELVRKYLGSVVPVGDNYFAALNSAVFSDGSFVFVPAGVRSPMELSTYFRINASNTGQFERTLIICEDKAYVSYLEGCTAPMRDENQLHAAVVELVALEDAEIKYSTVQNWYPGDENGVGGIYNFVTKRAECRGARSKVTWTQVETGSAITWKYPSCVLLGDDSVGEFHSVALTHHRQQADTGTKMIHVGKRTKSKIISKGISAGHGQNTYRGLVRMDRGAEGARNYTQCDSLLIGKKCGAHTFPYIEVKNPSATVEHEATTSKISDDQLFYCRARGIDQENAVSMIVDGFCKQVFKELPMEFAVEAKKLLEVSLEGSVG
>NZ_CP014274.1|WP_062168631.1|2873208_2873619_+|DUF1311-domain-containing-protein
MSRLPLLLLALLPFAASAASTGKACDDARTQLDINTCAAADATAADAELNAVYRQVMQKLQGQPVAIEKLRAAQRLWIPLRDADIEARYPVGKDENPRVLYGSMYPMLYSSNKAALTRQRTQWLRATFLDRAEGEL
>NZ_CP014274.1|WP_062168633.1|2873655_2874420_+|Fe-S-cluster-assembly-ATPase-SufC
MLKIENLHASIGDKEILKGLSLDVKPGEVHALMGPNGAGKSTLGNVLSGRDGYDVTAGTVLFEDNDLLELEPEARAAAGLFLAFQYPVEIPGVNNTYFLRAALNAQRKARGEEELDSMQFLKLVRQKLAVLHLKDELLHRGVNEGFSGGEKKRNEIFQLAVLEPKLAILDETDSGLDIDALKSVADGVNALRSPERSFLVITHYQRLLDYIKPDVVHVLADGRIVKTGGPELALELEAHGYDFLKDRVVREAAK
>NZ_CP014274.1|WP_062168635.1|2874419_2875682_+|Fe-S-cluster-assembly-protein-SufD
MTALLDSLAGTFCGSKERAELLEAALKTGLPAARNEAWKYTSLRQLERRSFTAAPLQAPDIDAALLADIPSPRLVFVNGRHSADLSDLSALDVGVQVRTLSAVQKDEPEALRFLGRRFERAEEVFAQLNAALADEGVLVQVAEGIVSETPLHLVFVSAADSSDHAWHHRHLIELRRGAVLGLVEHHLQAGDSAHLDNTLAHVHIAQDAVLSHARVQADSARATSLLRTDAVLARDAQYRRIDLELGAALSRHELNVRLEGDNAKLTANGVLLGTGRRHIDTRLGIEHIAKDTSAELVWRGVAANRSRVVFHGGIGIREGADGTDANLSNKNLLLSADAEIDTQPTLVIDADEVKAAHGATVGQLDANALFYLRSRGVPAEQARAMLSAAFCHEPLAAVEGVLTEKLARHLDLALQQAGMA
>NZ_CP014274.1|WP_062168637.1|2875678_2876935_+|cysteine-desulfurase
MNLSSPRPIQHPTSAPDWERVRADFPLLMREVNGKPLVYFDNANTAQKPLSVIGAVDEFYRRYNANVSRAVHALGTEATEAYEGARNKLARFLNVRADELVLCSGTTFAINLVAYSWALPRLKAGDVILVSRMEHHANIVPWQLVAQRTGATIRVAEISPDGSLDLDALHAAMTPDVKLLALTHVSNVLGTINPVRDICREARKRGIITVIDGSQAAPHLLIDVAAIGCDFYAVTGHKMCGPTGTGALWARREHLQDMPPFLGGGEMIKEVSFDGTVFNDAPHKFEAGTPNIAGFIGLGVAVDYVEELGREHIEAREQELLAHFTEELQRAEGVRIFGTAPHKAAVVSFQIEGAHAHDLATLLDLQGVAVRSGQHCAHPLLQYYGVAATCRASLAFYNTHEEIESFMAALKKVRTLLG
>NZ_CP014274.1|WP_062168639.1|2877327_2877864_+|GNAT-family-N-acetyltransferase
MNELTFRNATAADIPALIELVTSAYRGDASRVGWTTEADILDGQRIDAAGIQGDLDRPRSVILLAEQDGLLQACCHVADENGHGYFGMFSVSPNAQGGGIGKQLMQRAEQHAAEQWQLPTMQMTVIDCRDELIAFYERRGYVRTGIKKPFPYGDERFGIPKRDDLQFEILEKPLGAIA
>NZ_CP014274.1|WP_062168641.1|2877860_2878193_+|non-heme-iron-oxygenase-ferredoxin-subunit
MSETWTFICASEELLPGEMKTGFDEVTGAPIVVFNLDGELYALEDQCTHEEFELSSGELDAAEGSIECILHGARFDVRDGRALCAPAYTAVPKFPVKREHGGIWSRDDRD
>NZ_CP014274.1|WP_062168643.1|2878420_2878861_+|hypothetical-protein
MPTSPAKSVPLTVAALRQRLHWLPLLFGLLLVCAVALQAKAMAAMPLAIVSHDQVQASPEPGHPQPPLQMAAISEAGSETSRPNRQRPAPVLSAPVQLAPLTSQHVFMTAASDTLLQHAVERAQRYPLAPCLLLNPGHAPPHRCAA
>NZ_CP014274.1|WP_062168644.1|2878986_2881278_+|TonB-dependent-receptor
MTHIKTRKYAPRATMLATATLAAGFSPLTALAADADADSARNKATDLDQVQVRGSWFAPSSPKFTAELLDTPKSVSVVTEKTIQEIGATNLVDALRMVPGITFGAGEGGNSTGDRPFLRGFDGQSNMFVDGLRDVGSQTREVFDLEQLEVVKGPSSAYGGRDSGGGSINLVSKTPKLKNETSASMGIGTDSYARGTVDANYVLGDGIAARLNLLKHESDIAGRDAANVSRWGIAPSIAFGLNGPLQLIASHYHLETDDLPDAGGFPYADPATGTTTGKPLVPDRNNYYGLKDRDFQRTRADISTLDASYSFGEHKLRNIARLGNTSNDYLWTQPDDSKNNPLLYGTLWRRTNNRAIDTKTFADQLSLTGAFQTGGLKHSYSAGVEYSEEKSSKGSYVIGGAGTNNPIGNNQVCKTTGAATGYNCTDFYNPNPNDPWSATHPVTRSDKVLDIDQTTKTKSVYAFDTIELSEKWLVNLGLRWDDYDTKQVTPVLNKAPTVLKNSDGFLNYQAGVVFKPTENGSIYLSYGTSSTPPGMDSGEGNDAISAAIENLKPQETKNYELGTKWDLFEKRLNLTAAIFHTEMNNARVVIDTGTTQNAGKKAINGVEIGINGQITDNWNVAGGYTYMDSELKDNGFVCGVTVPRGQPCPAGQYIVSPNNGNMFPNTPKHAATLWTTYVFPFGLTVGGGASYVDKQYGDAANTKWIPSYTRWDAMIGYAIQDNISLQLNVQNLTDKTYFTKAYASHYASIAPGRAATLALNVKF

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Crispr_ID: NZ_CP014274_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_17

2891221-2891323

Orphan

Consensus_repeat	Method
GTAGCGCCGAGCCATGCTCGGCA	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP014274_17

>merge|NZ_CP014274|17|2891221-2891323|CRISPRCasFinder
GTAGCGCCGAGCCATGCTCGGCAAAGCAGCCCCGTAGTGCCGAGCCATGCTCGGCAGAAGCCTTACAAGCAATCCCACCCGTAGTGCCGAGCCATGCTCGGCA

>NZ_CP014274|17|16|2891221-2891323|CRISPRCasFinder
GTAGCGCCGAGCCATGCTCGGCA	AAGCAGCCCCGTAGTGCCGAGCCATGCTCGGCAGAAGCCTTACAAGCAATCCCACCC
GTAGTGCCGAGCCATGCTCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062168665.1\|2889607_2891218_+\|sulfite-reductase-flavoprotein-subunit-alpha	unknown	unknown	gnl\|CDD\|99797
NZ_CP014274.1\|WP_062168649.1\|2882151_2882829_+\|Fe2+-dependent-dioxygenase	unknown	unknown	gnl\|CDD\|235483
NZ_CP014274.1\|WP_082746726.1\|2886464_2887079_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374499
NZ_CP014274.1\|WP_062168653.1\|2883708_2886123_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|227112
NZ_CP014274.1\|WP_062168671.1\|2894139_2894937_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|237100
NZ_CP014274.1\|WP_156455851.1\|2901799_2901994_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062168676.1\|2895936_2896368_-\|transporter	unknown	unknown	gnl\|CDD\|225264
NZ_CP014274.1\|WP_062168673.1\|2895134_2895797_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP014274.1\|WP_062168646.1\|2881422_2882130_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP014274.1\|WP_062168657.1\|2887104_2887626_+\|DUF2271-domain-containing-protein	unknown	unknown	gnl\|CDD\|226182
NZ_CP014274.1\|WP_062168659.1\|2887651_2888458_+\|DUF4198-domain-containing-protein	unknown	unknown	gnl\|CDD\|378467
NZ_CP014274.1\|WP_062168684.1\|2898190_2901550_-\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NZ_CP014274.1\|WP_062168644.1\|2878986_2881278_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|227115
NZ_CP014274.1\|WP_062168667.1\|2891418_2892009_-\|HutD-family-protein	unknown	unknown	gnl\|CDD\|377578
NZ_CP014274.1\|WP_062168682.1\|2897746_2898067_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP014274.1\|WP_062168651.1\|2883178_2883592_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062168680.1\|2896774_2897665_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293810
NZ_CP014274.1\|WP_062168678.1\|2896364_2896778_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|225264
NZ_CP014274.1\|WP_062168661.1\|2888636_2889611_+\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|224394
NZ_CP014274.1\|WP_082746585.1\|2892195_2894028_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|313759

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062168665.1\|2889607_2891218_+\|sulfite-reductase-flavoprotein-subunit-alpha	gnl\|CDD\|99797	cd06200, SiR_like1, Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	3.35952e-112
NZ_CP014274.1\|WP_062168649.1\|2882151_2882829_+\|Fe2+-dependent-dioxygenase	gnl\|CDD\|235483	PRK05467, PRK05467, Fe(II)-dependent oxygenase superfamily protein; Provisional.	1.03948e-143
NZ_CP014274.1\|WP_082746726.1\|2886464_2887079_+\|hypothetical-protein	gnl\|CDD\|374499	pfam16357, PepSY_TM_like_2, Putative PepSY_TM-like. This is a family of bacterial proteins with three PepSY-like TM regions.	4.14674e-102
NZ_CP014274.1\|WP_062168653.1\|2883708_2886123_+\|TonB-dependent-receptor	gnl\|CDD\|227112	COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism].	0
NZ_CP014274.1\|WP_062168671.1\|2894139_2894937_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|237100	PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional.	2.17527e-103
NZ_CP014274.1\|WP_062168676.1\|2895936_2896368_-\|transporter	gnl\|CDD\|225264	COG2391, COG2391, Predicted transporter component [General function prediction only].	5.12605e-08
NZ_CP014274.1\|WP_062168673.1\|2895134_2895797_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.59179e-59
NZ_CP014274.1\|WP_062168646.1\|2881422_2882130_+\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	2.4645e-29
NZ_CP014274.1\|WP_062168657.1\|2887104_2887626_+\|DUF2271-domain-containing-protein	gnl\|CDD\|226182	COG3656, COG3656, Predicted periplasmic protein [Function unknown].	1.37612e-66
NZ_CP014274.1\|WP_062168659.1\|2887651_2888458_+\|DUF4198-domain-containing-protein	gnl\|CDD\|378467	pfam10670, DUF4198, Domain of unknown function (DUF4198). This family was previously missannotated in Pfam as NikM.	6.12492e-66
NZ_CP014274.1\|WP_062168684.1\|2898190_2901550_-\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	4.44924e-48
NZ_CP014274.1\|WP_062168644.1\|2878986_2881278_+\|TonB-dependent-receptor	gnl\|CDD\|227115	COG4774, Fiu, Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism].	0
NZ_CP014274.1\|WP_062168667.1\|2891418_2892009_-\|HutD-family-protein	gnl\|CDD\|377578	pfam05962, HutD, HutD. HutD from Pseudomonas fluorescens SBW25 is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterized repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. Evidence outlined by Zhang & Rainey (2007) suggests that HutD functions as a governor that sets an upper bound on the level of hut operon transcription. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of PA5104 (HutD from Pseudomonas aeruginosa) show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.	6.77469e-58
NZ_CP014274.1\|WP_062168682.1\|2897746_2898067_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.22292e-16
NZ_CP014274.1\|WP_062168680.1\|2896774_2897665_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293810	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain. Persulfide dioxygenase (PDO, also known as sulfur dioxygenase, SDO, EC 1.13.11.18) is a non-heme iron-dependent oxygenase which catalyzes the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria. Mutations in ethe1 (the human PDO gene) are responsible for a rare autosomal recessive metabolic disorder called ethylmalonic encephalopathy. Arabidopsis thaliana ETHE1 is essential for embryo and endosperm development. Bacterial ETHE1-type PDOs are also called Type 1 PDOs. Type II PDOs (also called PDOAs), are mainly proteobacterial. These enzymes belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	3.04699e-66
NZ_CP014274.1\|WP_062168678.1\|2896364_2896778_-\|YeeE/YedE-family-protein	gnl\|CDD\|225264	COG2391, COG2391, Predicted transporter component [General function prediction only].	3.89481e-10
NZ_CP014274.1\|WP_062168661.1\|2888636_2889611_+\|FAD:protein-FMN-transferase	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	2.8108e-109
NZ_CP014274.1\|WP_082746585.1\|2892195_2894028_-\|hypothetical-protein	gnl\|CDD\|313759	pfam10605, 3HBOH, 3HB-oligomer hydrolase (3HBOH). D-(-)-3-hydroxybutyrate oligomer hydrolase (also known as 3HB-oligomer hydrolase) functions in the degradation of poly-3-hydroxybutyrate (PHB). It catalyzes the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers.	2.83198e-144

>NZ_CP014274.1|WP_062168665.1|2889607_2891218_+|sulfite-reductase-flavoprotein-subunit-alpha
MNPNRSMRALLGNLGVGLVLLLIALFLLRLHLSESWWNAPPLMPQWWAALAALLVYAVACFALWWRTRQRDDDAGDSSEPPILVVWASQTGFAQQLAQRTAAQLRAAGHKIRLRAIDQVDAALLDSSRQALFVASTTGEGDPPDHALAFLSRVMPQPLKLAQLQYAVLALGDKTYDQYCAFGHQLDDWLRAQGAQPLFDTVEVDNADAEALRHWQQLLGQLGGSTADATDWSAPAYQSWLLRRREMLNPGSIGGKVFHLQLQPADGKLPTWQAGDIAEIGPRQSAPAVTHWLQTHGFDAAAVLADGRLLRDALAVSHLPDSCDTRDADALAANLTPLPHREYSIASMPSDGSLQLMLRRQLRPDGTPGLASGWLCDYTAIGDSIDLRLRSNSNFHPPRNDAPLILIGNGTGIAGLRAHLRARIDAGARRNWLLFGERNAAHDFHFGDELRQWQREGGIERLDAVFSRDPGQFHYVQDALAAHSTVLQQWLEDGATLLVCGSLQGMAPAVDKVIIDTIGAEAHQALRIAGRYRRDVY
>NZ_CP014274.1|WP_062168661.1|2888636_2889611_+|FAD:protein-FMN-transferase
MSSNSDIAALGGHTMGTSWSVKLVAARSRDLHPLHAGIQAELDRVVAQMSTWEADSDINRYNRAAAGTWHALPDDFWNVLSTARDIAERSNGAFDPTIGPLVALWGFGADAAAQAVPDSAQLAEVAARCQWQKLQLDPQTQSALQPGGLQLDLSAIAKGYGVDLVSRWLQRAGVAAALVEVGGELHGYGLKPDGQPWRVLVESAPEEDAGADYPPRVLALDDLAVATSGDRWHHFERDGVSYSHTLDPRSHAPVSRAAAAVSVIARDAMHADAWATALTVMGADEGLAFANHHDLAARFITRTSTGLIETMSPAFQRYLDASAQ
>NZ_CP014274.1|WP_062168659.1|2887651_2888458_+|DUF4198-domain-containing-protein
MKRSLLLAAILAAALPFSAAAHKAWLQPSQTVIAGTNPWITVDAAVSNDLFYFNHVPLRLDNLVITAPDGSTVQPQNVATGKYRSVFDVELTQQGTYRLANVNAGLMANWQEDGKPKRWRGNAATFATEVPKDAKELKVSETAGRVETFVTNGKPNDTALKPTGKGMELVAVGHPNDLFAGEQAKFKLLVDGKPHAGLEVEITRGGTRYRNAQEEIKVTTDANGEFSVTWPQAGMYWLETGTEDNKTSIPQANVRRLSYVATLEVLPQ
>NZ_CP014274.1|WP_062168657.1|2887104_2887626_+|DUF2271-domain-containing-protein
MRVTLTIALSGLIATAPAAYAASLDVNVEVPKLNVAEYHRPYVAVWIEGADQQVAANLSVWYQLKDTAEGHGTKWLPDLRQWWRKSGRTLQVPVDGVTGPTRPVGKHQLSFSDRQPQLRALPAGQYTLVVEAAREVGGRELVKIPFSWPARAVQNGSAQGSTELGAVTLAVKP
>NZ_CP014274.1|WP_082746726.1|2886464_2887079_+|hypothetical-protein
MQQQASRGFWLRTLHQWHWISSAVCLIGMLLFSLTGITLNHASKIEAKPQVQNLQLELPAPVLKALGEREEGNAPLPARVADWLSNRLEVSIGSREAEWSPEEIYLSMPGPGSDAWLSIDRETGAVEFEKTRRGWISYFNDLHKGRNAGPGWGWFLDVFAVACLVFCITGLFLLHLHARQRRMTWPLVGLGLLIPLLIALLLIH
>NZ_CP014274.1|WP_062168653.1|2883708_2886123_+|TonB-dependent-receptor
MALRQRHRVSVSRQLLSLAVLGALSASAHASGSGAPTTLDKVVVTASGFEQKITDAPASISVVSREELALRPYTSLVDALRDVEGIDVGMETTDKNGRATISMRGMPSEYTLVLIDGRRQSNVGNLYPNNFGGGQFAYMPPLDAVERIEVVRGPMSTLYGADAMGGVINIITRRNQSEWHGSVTQGLTVQQEDAFGDARTTDLYLSGPLIQDRLGMTVRGSWYDIDESRPEWDSLPLPDGSQWERALGFGGGGKAVANTNWNSGIRLNFKASENHDLWLDYDVSRQKYDNSKGQTGTLDSAESLWRSGVATIPNGNGGTTTRRVVQPRVGYTAYQRYELDQLALTHQGRYDFGTWQTSLSRTQSNNLGRSLPLTLAERADLQNLWNDVCQRRGQAANCNMASGNLSVLNDAERARLQAFLPRPLRTMELDAMVLDTMLELGFDAHKVTVGGQYNNTDMTDGVFGMDGGGYRDNVKQKHRTWSVFAEDNWSLTDALTATFGLRYDHHNIFGSHVSPRAYLVWNASDAWTVKGGVSTGYKTPRPDQLFPGVTGFGGQGVIPMVGSPNLKPETSTNYEIATYYDGGRWGFNATAFLNRFDDKIASGGSFANCEVAPANSGYCVDVGPGWAALGYSVFSQSVNLDKAETRGVELASHVDLLDNLQLRGNYTYTKSEQTSGATKGQPIAGNPAKHMANASLNWQLNDAISLSLIGEGRYDRYRDTLVSNVGGVSSSTVRYYEDYTTFHLGGSWKLNDWLTVNARVNNLFDKDFVSQSCILSSPSEYSCVDDYAVKEQRRSYWLSLNAKF
>NZ_CP014274.1|WP_062168651.1|2883178_2883592_+|hypothetical-protein
MPQPQRQHAYSTAASGVVSLRPLVLCLLMLLSLLASLCQSGSQLARLGVAENSTASAPAEERQGGERQLEEQSPAKLRKASQLRAAIAIPPLPSVKPLLLAATGPSPLRVAIPVSEPVMGHALASPRQQRGQAPPLS
>NZ_CP014274.1|WP_062168649.1|2882151_2882829_+|Fe2+-dependent-dioxygenase
MLLHIPNVLSPEQVALFRQKLDAADWTDGRETVGHLGTHAKRNQQLPENSPLRRELGETVLLALASNPSFFSAALPLKYLPPRFNRYSGGGNYGFHVDGAVMNLGQGEQLRSDVSCTLFLCEPDEYEGGELIISDTYGEHEVKLPAGDLVVYPSSSLHKVQPVTRGARLASFFWVQSMVRDDAHRRLLWEMDTSIQQLTQDCPQHPSLVSLTGIYHNLLRQWAQT
>NZ_CP014274.1|WP_062168646.1|2881422_2882130_+|sel1-repeat-family-protein
MSNALPIDAAALAQQLLNDPQGTFARIRDAALGGQAQAQLLLAQLYIEGKGVDRDEQAALLWYETAANNGSALAMNMLGRCHELGQGCTPDAALAAVWYRSAAEAGLDWGMYNHANLLATGRGVAQDRPRALALYTQAAQLGHAKSMNLLARHLEDGLEIERDPQAALAWYQRSAEAGDFRGQANLASILLQQGQIEAAAQWLRLALANGSPAFMAHIVPELAASPHPQIRALVA
>NZ_CP014274.1|WP_062168644.1|2878986_2881278_+|TonB-dependent-receptor
MTHIKTRKYAPRATMLATATLAAGFSPLTALAADADADSARNKATDLDQVQVRGSWFAPSSPKFTAELLDTPKSVSVVTEKTIQEIGATNLVDALRMVPGITFGAGEGGNSTGDRPFLRGFDGQSNMFVDGLRDVGSQTREVFDLEQLEVVKGPSSAYGGRDSGGGSINLVSKTPKLKNETSASMGIGTDSYARGTVDANYVLGDGIAARLNLLKHESDIAGRDAANVSRWGIAPSIAFGLNGPLQLIASHYHLETDDLPDAGGFPYADPATGTTTGKPLVPDRNNYYGLKDRDFQRTRADISTLDASYSFGEHKLRNIARLGNTSNDYLWTQPDDSKNNPLLYGTLWRRTNNRAIDTKTFADQLSLTGAFQTGGLKHSYSAGVEYSEEKSSKGSYVIGGAGTNNPIGNNQVCKTTGAATGYNCTDFYNPNPNDPWSATHPVTRSDKVLDIDQTTKTKSVYAFDTIELSEKWLVNLGLRWDDYDTKQVTPVLNKAPTVLKNSDGFLNYQAGVVFKPTENGSIYLSYGTSSTPPGMDSGEGNDAISAAIENLKPQETKNYELGTKWDLFEKRLNLTAAIFHTEMNNARVVIDTGTTQNAGKKAINGVEIGINGQITDNWNVAGGYTYMDSELKDNGFVCGVTVPRGQPCPAGQYIVSPNNGNMFPNTPKHAATLWTTYVFPFGLTVGGGASYVDKQYGDAANTKWIPSYTRWDAMIGYAIQDNISLQLNVQNLTDKTYFTKAYASHYASIAPGRAATLALNVKF
>NZ_CP014274.1|WP_062168667.1|2891418_2892009_-|HutD-family-protein
MHTLNSPTRVIPAALYQRERWRNGLGWTREILRLPEQGDWQLRLSIAEIEQDAAFSAFPGVERELVLLQGEGLRLRFADGRCETLLPPYQRLRFAGEEDIVGELVDGVTQDFNLMWRRDALQAELLHRPLVGNMLFFTEPQAAWAIHLLAGQAVFEGNELPALSAGDTAWLGSGERQRYTLSGGGELLAIRLTPVV
>NZ_CP014274.1|WP_082746585.1|2892195_2894028_-|hypothetical-protein
MSQSLLRAACGLFVGLSLASCASGPASKPVESSMFSNELRSEHRGSDDLLTAGLGLAGLRSMAPPAFADASAPTVDELRRRAMWGSWRGIADLAPGGGYGELFGSLQNVPGREYAAFARLPGASQPHRVLAQIPDNFDTAKRCVLVAPASGSRGIYGAVSVAAAWGLPKGCTVVYTDKGAGSDYYDLNAQMGVRANGTIGALGEVSDLAFVPDAPINAAGVAFKHAHSKDNPEADWGRHVKQAAEFALLALAQAYPQAAPFTFENTRIIAVGISNGGGAVLRAAELEGDWLDAVVAGEPSVYSSGTGARALYDYSTEAALLMPCAQLHMSNLPQPPMTAALQAGAAVRCASLAAEGVISGATPAAQARSAYELMLSKGWTDESLRAGALSTGFDLWRAISATYASAYGRYGVGEHPCGFNFAAQNPDFSPRAATAIERAAWVSDGSGIPPGAGVGLLDSKVALPDLTYAGLKCLRALWDGQGEDAKRVQAGIQATHAGLPRKGLPVMVVHGADDGLIPPAFSSAPYAAAAKAAGREVSYWKVQHVQHFDGFLGLPDYGSRYLPLLPYVYEALDRVQARLDKGTALPADAVIATTPRAGKPLMAENLAMPK
>NZ_CP014274.1|WP_062168671.1|2894139_2894937_+|SDR-family-NAD(P)-dependent-oxidoreductase
MDRFLQDRTALVTGSTSGIGLAIAQALANAGARVAINGLGTPEQIDTALASVTDAGSEARHFDADLRKPDQIAHMLEAVQAWGNIDILVNCAGIQHAAPLAEQPPQKWDDIIAINLSAAFHTMQHALPGMAERGYGRVVNIASVHGLVASKNKAPYVASKFGIVGLSKVAALEYAAAGNRESGGVTVNCVCPGWVETPLIEPQIQAHRNGGSRDDGVRALLEEKQPSLRMSLPEDIGAMVVWLCRRESHNLTGAAMPMDGGWTAQ
>NZ_CP014274.1|WP_062168673.1|2895134_2895797_+|response-regulator-transcription-factor
MPSLLIADDHPLFRAALRQAASEAVSELQVREAESLEGVLAALDAAPDTDLILLDLHMPGNHGLAGLAAIRAQHPGVAVIVVSANDDPRVVRRALDHGAAGYLPKSSGLNELREAIRSVMACEQWLPASLRAAVSRAQSSSHDSELAARLASLSPQQFRVLALVAEGLLNKQIADRLDVQERTVKAHLSAIFERLGVRNRTQASVVLRELELSDPARQAV
>NZ_CP014274.1|WP_062168676.1|2895936_2896368_-|transporter
MSTSRITLAALVSGALFGVGLALSGMTDPLRILGFLDVLGDFDPALLFVLGGAVGTTMLLFRFVLRRPAPVLAERFQISDLRHIDRPLLIGAALFGIGWGLAGYCPGPALVGLGVLSPEALWFVPAMLAGMLLHKATTRSTGS
>NZ_CP014274.1|WP_062168678.1|2896364_2896778_-|YeeE/YedE-family-protein
MSTWMTALAGGVLIGLAATLLLWLTGRIAGISGIVGGVLMPRSGDVAWRAAFLIGLIGAGAAYLWLVPGAYTPRQGFPPLLLVTAGLLVGFGTRMGNGCTSGHGVCGLGRLSVRSFAAVLTFMATAILTTYIVRHVA
>NZ_CP014274.1|WP_062168680.1|2896774_2897665_-|MBL-fold-metallo-hydrolase
MSQTQISSPLVEPFYDKDTGTFSYVVYDQTGGMAVIIDPVLDYEPAGARTSTASADVLLAFVRSKLLTVAWILETHAHADHLSAAGYLADQLQAPVAIGRGIVQVQQHFKALFGLGDEFIADGHQFDRLFDDGDTFNVGALNARVIATPGHTDDGLTYVIGDAAFVGDTVFAADTGTARCDFPGGDAQRLYASIQRILSLPGDTRIFLCHDYPGTRREAHALTSIDEQKQHNLHLKDGTDAPTFVQMREQRDATLPVPKLILPALQVNIRGGRLPEPDANGVRYLRLPLDQIGHTS
>NZ_CP014274.1|WP_062168682.1|2897746_2898067_+|winged-helix-turn-helix-transcriptional-regulator
MPASDMDMEQMQVHAEQAAQLLKSLAHPARLRVLCRLVEGEASVGELQAGVGLSMSALSQHLAVMRDAQLVSTRREAQSIFYALADSPAMGVMQALHAAYCGKASG
>NZ_CP014274.1|WP_062168684.1|2898190_2901550_-|response-regulator
MLSLVTVALAGLAWLALMFGVALYGERRPTAFARHWRHIYTLSLAVHCTSWTFYGTVTQAARHGWPLPPTFVGAILFYALAIGVMMRLVRLARETNATSLADLIAARLGRDAWLAATVTLVTVLGLIPYIALQLKAVAMSFGMITSRAVDAGQTGSIWHDSALYVALAMALFAMLFGARRADASEHNRGLVLAMAAESVFKLGAMLALGVFVWFGLKGVPATLPAPVNPQEGGFIPLVILGGLAMFLLPHQFHVGVVECRDPADVRTARWLFPLYLLLIALPILPLARAGTLLLGNSVPSDMYTLALPFAAGHEGVALFAFLGGLSAATGMVVVSTLTLSLMIGNHWFAPGLLRSAWARAGGGDHRRELVWLRRAGICVIMLLAWGYSRLIGGGNVLADIGAVSFSAMATLVPVLAFAIWRPQTPPRAAIAGVLAGFATWAWVLLLPSLLESGGRAPAWLLQGPFGWQWLAPQGLFGLTGWTPLGRAVGASLFVGTAVTLLSMAWRRDTPDRISRNLDAETLRDAGRRFLPYERVQRLLADAPRTGAVPAAIEASVERELSAVLGAASARLLLDAARREGRELATVAAIVSEASQDLRFSQQVLQAALQNMSQGISVIDREQRLVAWNRPYARMFGFPDELLQVGRPIVDLTRWALQAMPARGGDERAVDRRLAFMRAGTPHLTERVFPDGKIVEIRGNPMPGGGFVATFTDVTAFRRSERELKRSNETLEQRVGERTALLESAKREAERANDAKSRFLAAVGHDLLQPLHAAHLFTDTLAQQVESSQQQQTVMQIRGALDSTTDLLTGLFDMSRLEAGGLVPQARDLPLAEVLDPLVSEFRALATARGLDFHYVPTRAWVNSDPQLLRRVLQNFLANAVRYTSAGGVLLGVRREGQQLRVEVHDTGPGIAKQEQQRIFEEFRRGEDSSGQGLGLGLAIADRIAGLLHAPLRLRSEKGRGTVFSVSLQHVASPQMAATPHLRNAATSGGVSVLLVDNDPAALQGLAGLLRGWGYNVAEAAGETQAVAALQALPASLWLFDYNLDDGDTGTALQLRLGERFGARPTLILSADDSLGTRREVLEQGLTLLHKPVRPLALKSILDRLLAADALRPDAGRRES
>NZ_CP014274.1|WP_156455851.1|2901799_2901994_-|hypothetical-protein
MFVAAALVVAAAVVKVVAIAGVVAVVVDLALVLAAAVADALALALALAVAVAVALAVVGVGVGA

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Crispr_ID: NZ_CP014274_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_18

3692718-3692814

Orphan

Consensus_repeat	Method
AAAGCCCCTCTCCCTCCGGGAGAGGGGTTGGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014274_18

>merge|NZ_CP014274|18|3692718-3692814|CRISPRCasFinder
AAAGCCCCTCTCCCTCCGGGAGAGGGGTTGGGGTGAGGGTAAGAGCTGAAGCATTGCCGCTTAAAGCCCTTCTCCCTCCGGGAGAGGGGTTGGGGTG

>NZ_CP014274|18|17|3692718-3692814|CRISPRCasFinder
AAAGCCCCTCTCCCTCCGGGAGAGGGGTTGGGGTG	AGGGTAAGAGCTGAAGCATTGCCGCTT
AAAGCCCTTCTCCCTCCGGGAGAGGGGTTGGGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062170171.1\|3686296_3687847_+\|monovalent-cation/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|237166
NZ_CP014274.1\|WP_062170181.1\|3690100_3690700_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234700
NZ_CP014274.1\|WP_062170175.1\|3688346_3688631_+\|K+/H+-antiporter-subunit-F	unknown	unknown	gnl\|CDD\|180435
NZ_CP014274.1\|WP_062171843.1\|3701527_3702607_+\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NZ_CP014274.1\|WP_062170198.1\|3702608_3702962_+\|peptide-binding-protein	unknown	unknown	gnl\|CDD\|212789
NZ_CP014274.1\|WP_062170192.1\|3697065_3698574_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225646
NZ_CP014274.1\|WP_062170177.1\|3688627_3688963_+\|Na+/H+-antiporter-subunit-G	unknown	unknown	gnl\|CDD\|237169
NZ_CP014274.1\|WP_062170185.1\|3691391_3692690_-\|homogentisate-1,2-dioxygenase	unknown	unknown	gnl\|CDD\|235421
NZ_CP014274.1\|WP_062170196.1\|3700446_3701535_+\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|213783
NZ_CP014274.1\|WP_062170188.1\|3695023_3696139_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062170190.1\|3696461_3697055_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|379399
NZ_CP014274.1\|WP_062170183.1\|3690829_3691390_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236335
NZ_CP014274.1\|WP_062170179.1\|3689069_3690023_-\|calcium/sodium-antiporter	unknown	unknown	gnl\|CDD\|273039
NZ_CP014274.1\|WP_062170194.1\|3698780_3699641_-\|tryptophan-2,3-dioxygenase	unknown	unknown	gnl\|CDD\|188272
NZ_CP014274.1\|WP_156455993.1\|3693277_3694348_-\|4-hydroxyphenylpyruvate-dioxygenase	unknown	unknown	gnl\|CDD\|225726
NZ_CP014274.1\|WP_062170169.1\|3683091_3685920_+\|monovalent-cation/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237157
NZ_CP014274.1\|WP_057626447.1\|3685919_3686300_+\|Na+/H+-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|236377
NZ_CP014274.1\|WP_057626456.1\|3694515_3695010_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP014274.1\|WP_156455880.1\|3696073_3696547_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062170173.1\|3687843_3688350_+\|Na+/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|181598

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062170171.1\|3686296_3687847_+\|monovalent-cation/H+-antiporter-subunit-D	gnl\|CDD\|237166	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NZ_CP014274.1\|WP_062170181.1\|3690100_3690700_-\|hypothetical-protein	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	4.34565e-05
NZ_CP014274.1\|WP_062170175.1\|3688346_3688631_+\|K+/H+-antiporter-subunit-F	gnl\|CDD\|180435	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed.	7.71487e-36
NZ_CP014274.1\|WP_062170198.1\|3702608_3702962_+\|peptide-binding-protein	gnl\|CDD\|212789	cd11855, SH3_Sho1p, Src homology 3 domain of High osmolarity signaling protein Sho1p. Sho1p (or Sho1), also called SSU81 (Suppressor of SUA8-1 mutation), is a yeast membrane protein that regulates adaptation to high salt conditions by activating the HOG (high-osmolarity glycerol) pathway. High salt concentrations lead to the localization to the membrane of the MAPKK Pbs2, which is then activated by the MAPKK Ste11 and in turn, activates the MAPK Hog1. Pbs2 is localized to the membrane though the interaction of its PxxP motif with the SH3 domain of Sho1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.	3.87269e-06
NZ_CP014274.1\|WP_062170192.1\|3697065_3698574_-\|MFS-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	2.86669e-139
NZ_CP014274.1\|WP_062170177.1\|3688627_3688963_+\|Na+/H+-antiporter-subunit-G	gnl\|CDD\|237169	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed.	3.98609e-33
NZ_CP014274.1\|WP_062170185.1\|3691391_3692690_-\|homogentisate-1,2-dioxygenase	gnl\|CDD\|235421	PRK05341, PRK05341, homogentisate 1,2-dioxygenase; Provisional.	0
NZ_CP014274.1\|WP_062170196.1\|3700446_3701535_+\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	gnl\|CDD\|213783	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase].	7.39927e-175
NZ_CP014274.1\|WP_062170190.1\|3696461_3697055_-\|thioredoxin-family-protein	gnl\|CDD\|379399	pfam13899, Thioredoxin_7, Thioredoxin-like. Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond.	3.33286e-10
NZ_CP014274.1\|WP_062170183.1\|3690829_3691390_+\|hypothetical-protein	gnl\|CDD\|236335	PRK08724, fliD, flagellar filament capping protein FliD.	0.00158791
NZ_CP014274.1\|WP_062170179.1\|3689069_3690023_-\|calcium/sodium-antiporter	gnl\|CDD\|273039	TIGR00367, Uncharacterized_membrane_protein_MJ0091, K+-dependent Na+/Ca+ exchanger related-protein. This model models a family of bacterial and archaeal proteins that is homologous, except for lacking a central region of ~ 250 amino acids and an N-terminal region of > 100 residues, to a functionally proven potassium-dependent sodium-calcium exchanger of the rat. [Unknown function, General].	3.00242e-50
NZ_CP014274.1\|WP_062170194.1\|3698780_3699641_-\|tryptophan-2,3-dioxygenase	gnl\|CDD\|188272	TIGR03036, trp_2_3_diox, tryptophan 2,3-dioxygenase. Members of this family are tryptophan 2,3-dioxygenase, as confirmed by several experimental characterizations, and by conserved operon structure for many of the other members. This enzyme represents the first of a two-step degradation to L-kynurenine, and a three-step pathway (via kynurenine) to anthranilate plus alanine. [Energy metabolism, Amino acids and amines].	1.84326e-127
NZ_CP014274.1\|WP_156455993.1\|3693277_3694348_-\|4-hydroxyphenylpyruvate-dioxygenase	gnl\|CDD\|225726	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only].	7.50133e-155
NZ_CP014274.1\|WP_062170169.1\|3683091_3685920_+\|monovalent-cation/H+-antiporter-subunit-A	gnl\|CDD\|237157	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed.	0
NZ_CP014274.1\|WP_057626447.1\|3685919_3686300_+\|Na+/H+-antiporter-subunit-C	gnl\|CDD\|236377	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed.	3.47719e-60
NZ_CP014274.1\|WP_057626456.1\|3694515_3695010_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	1.40067e-16
NZ_CP014274.1\|WP_062171843.1\|3701527_3702607_+\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	1.11878e-161
NZ_CP014274.1\|WP_062170173.1\|3687843_3688350_+\|Na+/H+-antiporter-subunit-E	gnl\|CDD\|181598	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed.	3.38294e-59

>NZ_CP014274.1|WP_062170185.1|3691391_3692690_-|homogentisate-1,2-dioxygenase
MVSNAYQSGFGNEFATEAVPGTLPVGRNSPQQVAHGLYAEQLTGTAFTAPRGSNRRSWLYRIRPAAMHGEFTPFEQPHLHSDFSHAAASPNQLRWDPLPLPAAPTDFIDGLYTMGGNGSAEAHAGAGIHLYAANADMRGRYFYNADGELLIVPQLGRLRLRTEMGLIEIEPQQIAVIPRGVRFAVELPDGQARGYVCENFGALLKLPDLGPIGSNGLANPRDFETPVAAYEDLDGQFELVAKFQGRLWRADIGHSPLDVVGWHGNYAPYRYDLRNFNTIGSISYDHPDPSIFLVLHSASDTPGTSNLDFVIFPPRWLVAQNTFRPPWFHRNIASEFMGLIHGAYDAKAEGFVPGGASIHNCMTGHGPDAATFDKASQADLSKPDVIKDTMAFMFETRGVIRPTEQAMQAAHRQRGYQACWSGLRNNFTPPKG
>NZ_CP014274.1|WP_062170183.1|3690829_3691390_+|hypothetical-protein
MHPHKTELGHTVLQTHRAALDLRQRRALILCDGKRSLAELRGMLGNDVPELIAQLQRDGYLQVEAPIAPAVKAQAADPPPKLEPHAAVPSPLSPQAPVERRRSMVAARIYVLDILALQRNPTAAQLHKLLQAAREEGDTVNALKLALSHLPAMTSPGYTERVRGRLQEVLPEAHLTAVLEAAPLPA
>NZ_CP014274.1|WP_062170181.1|3690100_3690700_-|hypothetical-protein
MNRITLPTALFAVLLLAACQRTPPAEPVAAAPAATPAPAPEPAEPAPSAVAASDADWQGYGAAQLGTDAEQLRAAWSAELQGDAAADGGCYYLSPGAHTEGGPFFMLEGGRFVRYDVRGGDTAAPGGGRIGMDLAQLQALYPQAEPVQPHKYVADGKVLRVTATDGSQGALVFELGADGKATTWRVGLPPQVDYVEGCG
>NZ_CP014274.1|WP_062170179.1|3689069_3690023_-|calcium/sodium-antiporter
MFEAFIWFVLGLVLLALGGDSIVKAASGLAQRFGASPFVAGLLLVAFGTSLPELVVNARAFAVGAQELALGNAVGSNIVNVGLTLGLAALAYPLVVRTRLLSPLLVLLAVATLALIVFGLDGAINRIEGIVLLLGFVGVLAFLLKRARHEPVALQESIINYATTRTGLGLNLIRLAIAAVVLYYGARFVVQSAPVIGAGWGMSPLLAGLLPVAIGTALPEVAAAVAAARRGQGDMVVGHVIGSSLFNVLVVIGGMAALRPMPLPASFVRLELPAAIVFVLMLYPMLRGDLKVSRGEGAVLFVAFLAWVGLELALFAV
>NZ_CP014274.1|WP_062170177.1|3688627_3688963_+|Na+/H+-antiporter-subunit-G
MITFLQIALSALLAFGCFFILVGALGLVRFSDFFKRLHAPTKASTLGVGCVLVCSVAYHIFLGQDPQPRELLITVFLFITAPISAHLMAKAALSLMMESRPEPPKDEQKSP
>NZ_CP014274.1|WP_062170175.1|3688346_3688631_+|K+/H+-antiporter-subunit-F
MNGYQIFETTLVVCMHVVGIAMLLGLWRLLRGPTVPDRILALDTLSVTAIAELMLFGMYLDSAIYFEAALIIAMLGFCSTVVLSKFVLRRDIVE
>NZ_CP014274.1|WP_062170173.1|3687843_3688350_+|Na+/H+-antiporter-subunit-E
MSERRPLLRRVFPSPALSITVVAFWMVMSASFDLGQLVLGLLLGVVIPLFAARLDREFARLGTLRPVPKLIVVVLWDILVSNLRVAAQVLGPEHKLKPGFIWVPLDIANIHGIAALTSFITLTPGTVSAALSEDRRHLLVHVLHLEDANALINEIKSRYEAPLMEIFP
>NZ_CP014274.1|WP_062170171.1|3686296_3687847_+|monovalent-cation/H+-antiporter-subunit-D
MNHLVILPILIPLLGAALSLFIEHRRYGPKVQRSVAWASMAALAVAVALLVAQTSQGQISAYLLGDWPARLGIALVADGLAGWMLATTLLLAIPCLLYACTGWDRRAPHFHALFQFQLVGLNGAFLTGDIFNLFVFFEVMLIASYGLLLSGGRGLRMRIGLHYVVFNVTASTLFLIALGMLYATLGSLNMAEIGQRVAELPPSHLKLAKAALGLLLLVFCSKAALLPMYLWLPESYARAPAAVAALFVIMTKVGLYSVLRVTSLWFDADAGAMSGYGSDWLLWAGIATLVVGALGALAATRMSVLVAYLVVVSAATLFIAFALGNAGTISAGLYYLPHSTFAAAALFLIADLMRRRRVQADRRREHELVAVLPSRTVPGLLFLVGAVAVAGLPPLAGFLAKAALLSAVPDAHTAVVWAAVLGSSLLVIMGLARTGIRLFWRVPGDDDAAVPDPEPVDAPARPFETTATCLLLGYVVLMSVFAAPLMRQTDAIAAQLLAPDQYLHDVRGTAPQVRQP
>NZ_CP014274.1|WP_057626447.1|3685919_3686300_+|Na+/H+-antiporter-subunit-C
MELALASAIGVLAGIGIYLLLRARSFDVILGMTFLSYATNLLIFSAGRPVIGKAPVLKDGVATSLAHYTDPLPQALVLTAIVIAFAMTAVSIVLAMRSRSDNNSDHVDAHEPELPADDAAKPGAGA
>NZ_CP014274.1|WP_062170169.1|3683091_3685920_+|monovalent-cation/H+-antiporter-subunit-A
MTPVLLLLLALPFLLAAAIALTGRLSRGAAACLAAAAPVLGLALLGSVTPAVIDGEVIRNSWQWLPQIGLDFSLRLDGLAWMFTGLVLGIGALVVLYAHYYLSAKDSARRFYSYLLLFMGAMLGMVLAGNLLLLMVFWELTSISSFLLIGFWSHRKDAREGARMALIVTGGGGLALLAGVLLIGRIVGSFDLDVVLASGDLIRASALYPWALLLVLAGIFTKSAQFPFHFWLPQAMAAPTPVSAYLHSATMVKAGVFLLARLHPALAGTELFFYVVSGIGAITLLVGAWNAIFQHDLKGLLAYSTISHLGLITLLFGLSTPMAVVAGVFHILNHATFKASLFMAAGIIDHETGTRDMRRLGGLRKLMPITSALAIVASLAMAGIPLLNGFLSKEMLFAEALATQGPDWMRSAMSAAALLAGVLGVAYSLRFVHDTFFGKGPLDIDVVPHEPPRWMKVPVEVLVVICLAVGIAPALTIAPVLQTAAASILGTAMPAYSLSVWHGFNLPLAMSAVGVVGGVALYFGLRRFTDLYAARNRPTGKHLFHRALDLLFGFAHRVTTALANGSLQRMLFALVLVAVIVAAAPYMANPAMPVWPAPQSMPLLGWTLWLVMLACAFAGLFLYQQRLLAVIVMGGTGLMVALTFVFLSAPDLALTQLMVEMVTLALMLLGMNYLPTQSPPEHSRWRKRRDALLAVIAGGGIAALAYSLMTLPPNTMSGEMLLRSLPEAYGHNVVNVILVDFRGFDTFGEITVFGIAALVVHAMLRRTRMAPEQIMPGPPIKLPVPADLAQIMFPLTLTVSIFLFLRGHNAPGGGFIAGLVLAVPLLIQYVIQGTVSVESRFGFDYIRCIGLGLLIALLSGAASMLFGVPFLTSGHLDLELPLIGTVPLASAIGFDTGVYLVVFGGVMLILSMMGTIKPSRTRNARNGEIDIHRRSARTGEMH
>NZ_CP014274.1|WP_156455993.1|3693277_3694348_-|4-hydroxyphenylpyruvate-dioxygenase
MQVTTFENPMGIDGFEFVEFAAPAGQAAQLHAYFKNMGFTAVLRHRQRAITVYRQGGVNFLVNEEPNSFAADFAAKHGPSACGFAIRFQKPAAEVLSLALANGAEEVDLLPETRAVPAPVIKGIGDCMLYLVDRYGGAGSIYDADYEAIEGADQNPVGFGLTFIDHLTHNLYLGNMQQWSDYYERLFNFREIRYFDIKGAKTGLVSKAMTAPDGIVRIPLNESSDPKSQINEYLDAYKGEGIQHIACFTDNIYDTVEAMRAQGIDFLDTPDTYFDVVDLRIPDNGEDVERLRKNKILIDADPETKQRKLLQIFTKNCIGPIFFEIIQRKGNEGFGEGNFQALFESIERDQMDRGVL
>NZ_CP014274.1|WP_057626456.1|3694515_3695010_+|MarR-family-transcriptional-regulator
MSSSDYSKSTSIRASHVLLDLEQFLPYRISVLSNRVSGNIARLYGERYGLAIPEWRVITILALYPGSSASEVSERTAMDKVAVSRAVARLLERGFIKRETHGDDRRRSVLALSAAGFEVYETIAPMVIEMERRLMSALTEEEEQVLERLITRLADAGLQRMNEG
>NZ_CP014274.1|WP_062170188.1|3695023_3696139_-|hypothetical-protein
MPPAASPDSSTATAEQAPSGTQLPSVEELLDESAAPEESAPPPRYRLPQAAVPPNIMLQSAVTRLVEQKEQIDQLARNGLLAGLLPPEWSASPGNELRAFVASVVPFASDSVRGDTVAARVPLKFLLGHSQRWGKADVAEPISLSTYLASDERANGGGTDHAEVMLLSPLGLGWAQSGRSRVGFLRAMGAESMAARVTALPYPAPEQLALYQLSHDGLTQFWCVLDKRRLRALPVPALSLPLLTAYGVGAPQAWPSNWPAPAEVGAALAVARMGKAVAEVDLVKLVDKIGRDQANEIWTGASLMQLHTWVPRWRFFLASFIGLPAGLLLLAALALPGRVEAAAVAAALGFAGGAIAALAAPWIYARRKHLS
>NZ_CP014274.1|WP_156455880.1|3696073_3696547_+|hypothetical-protein
MGAGRRLLGGRGAGIGAGSWRHGGKAKAGCRGIDPLAAARGGNEDYGCGVAPSLWPKAKGRAGEGCFGFGFGFGFGFGFGFGFGFGFAASKQQTAKSKAPLPNPPLRHAQGRVQKKTAPFGAVFLSATRLTSPAAPILLGRHRTWRGRSPCPSPDRR
>NZ_CP014274.1|WP_062170190.1|3696461_3697055_-|thioredoxin-family-protein
MKQLVGMVPLLLTVALAGCSQPPPAAPEKVQPLDTSEQKAPVADTSQPVASGNTPTAADIAAVAGLNAQFDPARDPVADLETAKVEAQRGGKRIMLDVGGEWCSWCHLLDAFMEGDSELRRFRDANYVWMKVNYSPENENAEFLARFPEIKGYPHLFVLDAEGQLLHSQFTGDLEKGKGYDRAKFDAFLKEWAPPAK
>NZ_CP014274.1|WP_062170192.1|3697065_3698574_-|MFS-transporter
MSAAAPNSASTPAPVPEFKTTLGHPRPLWMLFMTEFWERFAFYGIRWALVLYIVAQFHGGNAAGETPANHTYGAYLALVYAAAIFGGYAADRIIGYQRSILMGAVIMAAGLFMIAIPNPQIFNLGLATIIVGNGLFKPNISTMVGKLYKLDDERRDSGFTIFYMGINMGAMISPILTQILAQKVFGTDAMPAYKMVFIASGIGMLVSLLWFQLERRHLKGIGAPLPDKQGSGPVIKTAVACLVAIPVMYGLLNAGANVLQVILTIMFIGLGIMLLLEGNREGKVSRNRVIAMLIIFTFNVLFWMFFEQAGSSFTFLADRIVDRQFGDWTFPTAWFQSVNSIAIITLAPVLAWLWVRLGKANPSIPRKFGLGLIFNGLAFLLLMFALSSLLDPGTNKIPFWTLFAVYWIQSIGELCLSPIGLSMVTKLAPVRLVGFAMGGWFLSTGIGNNLAGLFAGHVSGAGGMTVQSAHAGYTMGFWILIGGGVLLFLIAPLVQKLMHGVK
>NZ_CP014274.1|WP_062170194.1|3698780_3699641_-|tryptophan-2,3-dioxygenase
MTVEKNQRELEAGIHTDLQGRLTYAGYLRLDQLLAAQQPLSNPPHHDEMLFIIQHQTSELWLKLLAHELRAARGHLQRDEVWQCRKVLARAKQVLRLLTEQWAVLETLTPSEYMGFRDVLGPSSGFQSLQYRYIEFLLGNKNADMLTVFAHDPDGQAQLREVLEAPSLYEEFLAYLARFGHAIPATYEGHDWTQPHVSDPALRQVFENIYQDTDRYWREYSLCEDLVDLETQFQLWRFRHMRTVMRVIGFKRGTGGSSGVGFLRQALELTFFPELFEVRTTIRADG
>NZ_CP014274.1|WP_062170196.1|3700446_3701535_+|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha
MTVSAQFQINYLQYLDADGNLVRDDLPASLRDPRSLLPMFKQMLATRVFDTKAVALQRTGKLGTFASCLGHEAAHVGIGAAMKSGDVFAPSYREYGAMFMRGVRPRDVLMYWGGDERGSDYDRDSDAVRDFPICVPISTQCLHAAGSALSFKLRNLPQVAVSVCGDGGSSKTDFYAAVNSAGAYKLPLILCVVNNGWAISVPRSAQTGAETLAQKGLAGGLFCLQVDGNDLIAVLAAMEQARERALSGEGGTVLELLTYRLSDHTTADDARRYREDAEVKSAWLKEPLIRLRKYLTAQGVWSEEEEKNWIAECGTRVDEEVNAYLNCPVQPVEAMFDYLYADPPPDLLAQRAAAIALEQRHG
>NZ_CP014274.1|WP_062171843.1|3701527_3702607_+|alpha-ketoacid-dehydrogenase-subunit-beta
MDDIKRTAAVTPASHDHGVAHIAASNSGDNPMTATPITLIEAVTQALAWEMEHDPSVLVLGEDVGVNGGVFRATAGLQQQFGAQRVLDTPLDETTIAGLTVGLAAQGMKPVAEAQFDGFVYPMVDHLICHAARLRNRTRGRLHCPMVLRVPWGGGIRAPEHHSEANEAIFTNVPGMRVVLPSSPQRAYGLLLAAIREPDPVIYMEPKRIYRQYKEVVVNDGEALPLDVCFVLRDGTDVTLVTWGAQVKEALEAADKLAGEGISAEVIDVATLRPLDFATIAESVAKTGRCVIVQEAPKTAGFGAEIAARLAEESLYDLLAPVERVAGYDTHIPLFRLEMKYLPSVERIVTAAKRAVAAG
>NZ_CP014274.1|WP_062170198.1|3702608_3702962_+|peptide-binding-protein
MLARLIGSYRSQYRNPLQFRTGQIVELGVRDEEWPAFAWVKTREGSAGWAPVAWLQVLDNGHAEALRDYSARELDVDRGEQVRLHHEHGGWWWSERADGAQGWLPARELELLEENCT

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Crispr_ID: NZ_CP014274_19

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_19

3814883-3814966

Orphan

Consensus_repeat	Method
GCCCCTGCCGAGCATGGCTCGGCACTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014274_19

>merge|NZ_CP014274|19|3814883-3814966|CRISPRCasFinder
GCCCCTGCCGAGCATGGCTCGGCACTACGCGGCGATATTGCGATATTGCCGGTGAGGCCCCTGCCGAGCATGGCTCGGCACTAC

>NZ_CP014274|19|18|3814883-3814966|CRISPRCasFinder
GCCCCTGCCGAGCATGGCTCGGCACTAC	GCGGCGATATTGCGATATTGCCGGTGAG
GCCCCTGCCGAGCATGGCTCGGCACTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062170385.1\|3822058_3822961_-\|drug/metabolite-exporter-YedA	unknown	unknown	gnl\|CDD\|183067
NZ_CP014274.1\|WP_062170359.1\|3802274_3803009_-\|SURF1-family-protein	unknown	unknown	gnl\|CDD\|119401
NZ_CP014274.1\|WP_062170383.1\|3821150_3822062_-\|EamA-family-transporter-RarD	unknown	unknown	gnl\|CDD\|225510
NZ_CP014274.1\|WP_057630479.1\|3803066_3803285_+\|twin-transmembrane-helix-small-protein	unknown	unknown	gnl\|CDD\|378564
NZ_CP014274.1\|WP_062170368.1\|3806644_3807586_-\|cytochrome-c-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|259979
NZ_CP014274.1\|WP_062170365.1\|3804971_3806582_-\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|238833
NZ_CP014274.1\|WP_062171863.1\|3807603_3808077_-\|DUF2244-domain-containing-protein	unknown	unknown	gnl\|CDD\|378350
NZ_CP014274.1\|WP_062170371.1\|3812422_3813871_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367457
NZ_CP014274.1\|WP_062170387.1\|3824633_3826286_-\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349910
NZ_CP014274.1\|WP_062170363.1\|3804229_3804826_-\|cytochrome-c-oxidase-assembly-protein	unknown	unknown	gnl\|CDD\|235341
NZ_CP014274.1\|WP_062170379.1\|3818638_3820348_+\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349910
NZ_CP014274.1\|WP_062170381.1\|3820654_3821026_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319923
NZ_CP014274.1\|WP_062170389.1\|3826735_3827668_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293812
NZ_CP014274.1\|WP_062170377.1\|3817923_3818577_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226123
NZ_CP014274.1\|WP_062171869.1\|3823159_3824494_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340925
NZ_CP014274.1\|WP_062170369.1\|3808367_3811586_+\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	unknown	unknown	gnl\|CDD\|237017
NZ_CP014274.1\|WP_062170391.1\|3827753_3828047_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_082746640.1\|3816533_3817877_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|227278
NZ_CP014274.1\|WP_062170373.1\|3814072_3814765_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NZ_CP014274.1\|WP_062170361.1\|3803331_3804207_-\|cytochrome-c-oxidase-subunit-3	unknown	unknown	gnl\|CDD\|238834

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062170385.1\|3822058_3822961_-\|drug/metabolite-exporter-YedA	gnl\|CDD\|183067	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional.	6.27106e-117
NZ_CP014274.1\|WP_062170359.1\|3802274_3803009_-\|SURF1-family-protein	gnl\|CDD\|119401	cd06662, SURF1, SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring complex of the respiratory chain, is an assemblage of nuclear and mitochondrially-encoded subunits. Its assembly is mediated by nuclear encoded assembly factors, one of which is Surf1/Shy1. Mutations in human Surf1 are a major cause of Leigh syndrome, a severe neurodegenerative disorder.	1.73036e-38
NZ_CP014274.1\|WP_062170383.1\|3821150_3822062_-\|EamA-family-transporter-RarD	gnl\|CDD\|225510	COG2962, RarD, Predicted permeases [General function prediction only].	3.30335e-97
NZ_CP014274.1\|WP_057630479.1\|3803066_3803285_+\|twin-transmembrane-helix-small-protein	gnl\|CDD\|378564	pfam11137, DUF2909, Protein of unknown function (DUF2909). This is a family of proteins conserved in Proteobacteria of unknown function.	1.2155e-16
NZ_CP014274.1\|WP_062170368.1\|3806644_3807586_-\|cytochrome-c-oxidase-subunit-II	gnl\|CDD\|259979	cd13912, CcO_II_C, C-terminal domain of Cytochrome c Oxidase subunit II. Cytochrome c Oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit II contains a copper-copper binuclear site called CuA, which is believed to be involved in electron transfer from cytochrome c to the binuclear center (active site) in subunit I.	8.18104e-66
NZ_CP014274.1\|WP_062170365.1\|3804971_3806582_-\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|238833	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.	0
NZ_CP014274.1\|WP_062171863.1\|3807603_3808077_-\|DUF2244-domain-containing-protein	gnl\|CDD\|378350	pfam10003, DUF2244, Integral membrane protein (DUF2244). This domain, found in various bacterial hypothetical and putative membrane proteins, has no known function.	3.84984e-30
NZ_CP014274.1\|WP_062170371.1\|3812422_3813871_-\|hypothetical-protein	gnl\|CDD\|367457	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.	1.87109e-115
NZ_CP014274.1\|WP_062170387.1\|3824633_3826286_-\|M28-family-peptidase	gnl\|CDD\|349910	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.	3.0544e-105
NZ_CP014274.1\|WP_062170363.1\|3804229_3804826_-\|cytochrome-c-oxidase-assembly-protein	gnl\|CDD\|235341	PRK05089, PRK05089, cytochrome C oxidase assembly protein; Provisional.	5.7578e-83
NZ_CP014274.1\|WP_062170379.1\|3818638_3820348_+\|M28-family-peptidase	gnl\|CDD\|349910	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.	1.21694e-109
NZ_CP014274.1\|WP_062170381.1\|3820654_3821026_+\|VOC-family-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	7.12921e-43
NZ_CP014274.1\|WP_062170389.1\|3826735_3827668_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293812	cd07726, ST1585-like_MBL-fold, uncharacterized subgroup which includes Sulfolobus tokodaii ST1585 protein; MBL-fold metallo hydrolase domain. This subgroup includes the uncharacterized Sulfolobus tokodaii ST1585 protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.17454e-104
NZ_CP014274.1\|WP_062170377.1\|3817923_3818577_+\|hypothetical-protein	gnl\|CDD\|226123	COG3595, COG3595, Uncharacterized conserved protein [Function unknown].	0.00114078
NZ_CP014274.1\|WP_062171869.1\|3823159_3824494_+\|MFS-transporter	gnl\|CDD\|340925	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters. This subfamily includes Escherichia coli alpha-ketoglutarate permease (KgtP) and similar proteins. KgtP is a constitutively expressed proton symporter that functions in the uptake of alpha-ketoglutarate across the boundary membrane. Also included is a putative transporter from Pseudomonas aeruginosa named dicarboxylic acid transporter PcaT. The KgtP subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.58531e-173
NZ_CP014274.1\|WP_062170369.1\|3808367_3811586_+\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	gnl\|CDD\|237017	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA.	0
NZ_CP014274.1\|WP_082746640.1\|3816533_3817877_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	6.27717e-89
NZ_CP014274.1\|WP_062170373.1\|3814072_3814765_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	7.61562e-25
NZ_CP014274.1\|WP_062170361.1\|3803331_3804207_-\|cytochrome-c-oxidase-subunit-3	gnl\|CDD\|238834	cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. CcO catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit III contains bound phospholipids in several crystal structures and is proposed to contain a "lipid pool." These phospholipids are believed to intrinsic constituents similar to cofactors of the enzyme.	1.52965e-95

>NZ_CP014274.1|WP_062170373.1|3814072_3814765_+|rhomboid-family-intramembrane-serine-protease
MFVSIPSRNKTGLRWAVPLLCVALLAAFLWSTSRPDEARRSLWLAWGALATGLGSSHDWWAALRDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERVLGPWRLLLLFLFGGASANLAALYVIGSPERSIIGASGAVSALMGTYLTLFPRAKLGVVLPLGLFLEFVRAPAFLLIGVWAALQVVFAYIGPSFGMVAWSAHVAGFLFGVVYGLYVRAAIARRLRKRKGF
>NZ_CP014274.1|WP_062170371.1|3812422_3813871_-|hypothetical-protein
MTASAIARVTALAVGIAGTLAFSHANAAAFQLKENSAKGLGRAFAGSTSAWDDASVVATNPASMRLLDGRQFQADLSAISFSADFKKASGRNSGPGGPGTGTEITGGNGGDAGMIAPVPAAYFHLPFGENDNMHFGLSLTAPFGFKTDYDRNWVGRYSGVTTDLKAIDLGAAFSYDVNPYVSFGASVFVEHLTIELSNALDMGAVVNGAAQQKAADAAAAAGRTPAQIAAAAAMAGQAAAAGGFFPGSADGFVTIEGDNNAVGYVLGTTLSPTENTNIAFSYRSKVEHKITGGKANFTVPQNVSVALGQPGSGLFVDTSGKATVTLPASLSMSITHRINDRWTVMGDVSRTAWKTAFDKVTVDFASNQPDNTLGFYYNDTTFGSIGTEYKLSDTITLRGGVAYDESPTSIEHRDVRVPDVTRKWLSVGLGWTPSEKTEFNFGYTHLFTSEPGINVTSATGNVVKGKYDVGGDILAASVNYKF
>NZ_CP014274.1|WP_062170369.1|3808367_3811586_+|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA
MNATPSPEVASPTSAAPPLLAPELPPAPPALRQAITDAWLKDEASHVRELLEQARLPAAEQAQVQATAADLVQRVRARAKNQGAIEAFMRQYDLGSEEGVLLMCVAEALLRIPDQETADKLIRDKLGEADWKRHMGQSDSVLVNASTWGLMLTGHLVDLADATKRDVHGAFKRLIGRVGEPVIRLAVRQAMKIMGHQFVMGRTIDEALSRSHKGDNSNYRYSFDMLGEGALTMKDALRYLEDYRRAIHAIGGDNIARGGKADGDVTKSHGISIKLSALYPRYEHAKRERVLKDLVPGVLELAQLAKSYGIGCTVDAEETDRLELSLDIIERVVSHPSLKGWEGFGIVVQAYQKRTPYTIDYLADLARRIGHKLQVRLVKGAYWDAEIKRAQIEGLPGYPVFTRKQNTDVSYIACAKRLFGHSDAIYPMFATHNAATIAAIKQIAKGGIYEHQKLHGMGDDLYAEVIPADRLNVPCRVYAPVGSHEDLLPYLVRRLLENGANSSFVNRITDEDVSIDDLIRDPVEAVSSFASIPHPKIPLPVDLLRSQNHDRTNSMGINLANDNELRALAEQLNAAIKPWQAAPLVPGASTSGATQAVTNPADNRQVVGHWQAADAATVEKALANAVAAQPAWNRTPAASRAAILEHAADQLEARIAEFMALCVKEAGKSLPDGVAEVREAVDFLRYYAKQARDQFGAGEKLPSPTGESNELQLHGRGVFVCISPWNFPLAIFMGQVAAALAAGNSVIAKPAEQTNLIGYYAVKLLLDAGVPEGVVQFVPGSGSVVGAALTADPRVAGVAFTGSTDTARLINRTMAARDAAIGVLIAETGGQNAFIADSSALPEQLVKDAIGSAFTSAGQRCSAARVLFVQDDIADKVMGMLAGAMAELKVADPGELSTDVGPVIDADALQILKDHAVRMDREARLIATAPLSEAAAHGTFFAPRAYELKDLGQLHQEIFGPVLHVIRWKADQLDAVIDQINATGYGLTLGVHSRIDETVDRIASRVNVGNVYVNRNQIGAVVGVQPFGGQGLSGTGPKAGGPHYLLRFATEKTVTVNTTAAGGNASLLTLGD
>NZ_CP014274.1|WP_062171863.1|3807603_3808077_-|DUF2244-domain-containing-protein
MIQVLRQDSDGSGTQLLLHPPRALSARQFVQLFAALAGLMVFAAGLAWLAGNRLAPVFALLHGLLVAAALRACWRSSNRREEIRVGPDCVEVIPAAGVSPVFRAHPYWVRVVTGKERVLLVSSGKWVEVGSFLAPVERRELAVTLEGLLAASSGGNR
>NZ_CP014274.1|WP_062170368.1|3806644_3807586_-|cytochrome-c-oxidase-subunit-II
MKQSSVWGAKLKHGLAAAAMMLSAQAAWAQSADPKEWQLNMGKGVTHTSRMAWDAHMVALWVCTVIGVLVFGAMAYAIFKFRRSKGAVAKQFSHNTKAEIIWTVIPILILVVMAWPATAKLIAMYDTRDSEMTVKITGYQWMWKYEYLGEDVAFTSRLDRKSDEVRQSGSVPTMASDPHYLLDVDNPLVLPVDTKVRFVITSDDVIHAWWVPALGWKQDAVPGFINERWTNIETEGVYRGQCAELCGKDHGFMPIVVKAVSKDEFKTWLASRKPAPATPAEAAPAPVAEPAPAATPEATPTVATPAAPAAAGA
>NZ_CP014274.1|WP_062170365.1|3804971_3806582_-|cytochrome-c-oxidase-subunit-I
MANTAVDHSDHHGHQQGFFERWFFSTNHKDIGTLYLLFSFTMFIVGAAMSVLIRWELMEPGLQHMKPEFFNQMTTVHALVMIFGGVMPAFVGLANWMIPLQIGAPDMALPRMNNWSFWLLPVAFGMLLVTLFLPGGAPAGGWTLYPPLSLQGGYNVAFSVFAIHVAGVSSIMGAINIIATVLNMRAPGIDLLKMPIFCWTWLITAFLLIAVMPVLAGAVTMLLTDKFFGTSFFNAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGVVSEILPTFSRKPLFGYQAMVYATAAIAFLSFIVWAHHMFTVGMPLGGEIYFMFATMLISIPTGVKVFNWVSTMWEGSLTFETPMLFSIAFVILFTIGGFSGLMLAIVPADYQYHDTYFVVAHFHYVLVTGAVLALIAAVYYWWPKWTGRMYNEFWGKVHFWWTMVFVNLLFFPQHFLGLAGMPRRIPDYNPVFADWNLISSIGAFGMFVTPFMMAVILLSSLRNGKRAEARAWEGAKGLEWTIPSPAPAHTFTVPPVIKPGDLAHDDVSH
>NZ_CP014274.1|WP_062170363.1|3804229_3804826_-|cytochrome-c-oxidase-assembly-protein
MTTPAPAPKPKPNAGLGRLIGVAFAVFVLTFSLVPLYRIACEKVFGVRLERGATTHETKAHAANSKRTVRVEFDGGVNSKLPWAFHPEKLTMDVVPGELNEALYFARNDSERALVGSAVPSVAPARASGYFNKTECFCFTAQTLQAGEKREMPVRFIVDPDLPADVNTITLSYTFYKNDALTEQLAPATAATAAHAAP
>NZ_CP014274.1|WP_062170361.1|3803331_3804207_-|cytochrome-c-oxidase-subunit-3
MAHNAPDANVYFVPSSSKWPFVGSIAMLVMMVGVASWLNDASWGRWTFFTGVAMLVFTLFLWFGDVIRESVGGNYNRQVDGSFRMGMIWFIFSEVMFFAAFFGALFYTRNMGLPWLGGEGHGVLTNEYLWDGYSAAWPTNGPADIGGAFQTIPAWGLPLINTLILLTSGVTLTIAHHALKAGNRKQLLIWLGLTVVLGCVFLFFQAEEYIHAYKELNLTLGSGIYGSTFFMLTGFHGAHVLLGTIMLTVMWFRAAKGHFTRDNHFGFEAAAWYWHFVDVVWLMLFLFVYVL
>NZ_CP014274.1|WP_057630479.1|3803066_3803285_+|twin-transmembrane-helix-small-protein
MNDSLKTLLVIAFLIVIVWNLGAGLYYLMIDRGQTKRTVNALTRRIALSVVLILLVALGIYTGWIRPHGVGG
>NZ_CP014274.1|WP_062170359.1|3802274_3803009_-|SURF1-family-protein
MTRQHTAIFGWSLALLVAAVFCALGGWQLQRMHQKEALLAQLPPSRAAAVSLAQAAAAPDALHWVADQLQFLPATVLLDNQLRESRAGIKVYQPARAANGAVVLVDLGWLPMPADRSLPAITPLQGTQAVQGLWAPAPASGIALGPALTATTQPQTWLATRIDLAAIAAQLKLGNSALAPRVLRLDPAMRLGYARDLDLLPNTLPPSRHLGYAVQWFAMALAVLLIALVLQFKRRRKAGVGNGG
>NZ_CP014274.1|WP_082746640.1|3816533_3817877_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MLGYNPHLPEVTGTSLRQPSHQPRPQRLAAQPQWRGSCLLVLALLAGPLLAQNNPREAEKKLQQLRGELKSVAQERRQLEGQRGEASQRLREADQKVARSARAVAEAEAAVQREQQSLSALQQRRATLESGLAQQRQQLATLLRGAYQLGNHAPLKLLLSQDTVANANRELAYHRYLQRERARAITRLTTDLQALTTTEQQIAARSLELQQAREQQRQQAAALAQDRRQRATVLTELDSRYQDRSQREQALGKDARALEQVLASLRAAAARAEAERRAAARRAAEQARQAAAASSGSTRSPARAAPGKTPPLVVANAPAPRVGGLGWPLSGNLLARYGGRLPDGRSSAGVLIGAPAGSTVTAVADGTVVFSDWMTGYGMILIVDHGNGYMSLYAHNDTLLKDAGATIKRGDAVAKVGNSGGQGVTALYFELRRNGQPVDPSTWLQRQ
>NZ_CP014274.1|WP_062170377.1|3817923_3818577_+|hypothetical-protein
MKRIFLLLLLSAAPPLAVAADDISKVNGSIQTDAGASYGDLETVNGSIKLAAGVQARGVETVNGSVSAEDNVQARNIETVNGGIRTGRNLVLARGLDTVNGGIYVDRGSRIGGDVETVNGSIGLVGVQLDGDIETVNGDITVGIDSVVKGGIKVNRPSFGISLTAPRKPRIVIGPNAVVEGQLVFEREVTLLVHDSAKIGPVTGATPQRFDSETAPR
>NZ_CP014274.1|WP_062170379.1|3818638_3820348_+|M28-family-peptidase
MQRKLLLCLAATAALAACKQEAPAPAASAPAPAPAPAHTFAGGINAADFGELVKHLASDEFEGRAPGSNGEELTVNYIRDQMQRIGLQPGNGDSWFQEVPMTETTADPNTVLKIQQGDTSRDLAFGTDMVIGTRSGQPEIRIDNSDLIFVGYGVDAPEQNWNDYTGQDWKGKTVVMFVNDPGFHTDDATLFDGKRMTYYGRWTYKFEEAARKGAAAALIVHDSAGASYGWDVVKNSWGGAQYDLPAAEDKQPRLQAQGWLSAEAARKLFADAGLDLDKSYKDASKRGFKPVPLKAKLSLDLKSTIAQKKSRNVVGVLPGSTRADEAVLYMAHWDHLGKHEGETGDNIYNGAVDNATGVAGILEVADAMTHQQTPPERSVVFLAVTLEESGLLGSQYYVNHPTFPLDKIAGVINIDAMSVNGRARDLTVTGFGSSELEDLLKPLAAKQGRSLHAESSVQSGFYFRSDHFNFAKAGVPALYADGGEDLLDGGVEAGKRAAEAYGKDRYHSPKDEYDPATWKLDGTIEDLELLYGVGQQLAGGDAWPNWYEGNPFKANRDAMMKNKDSNAAK
>NZ_CP014274.1|WP_062170381.1|3820654_3821026_+|VOC-family-protein
MLHHVSFPVTDLALSGAFYDAALGALGFRRVFEDETAIGYGLVDDQDMFCLKLRNEVSAPSAGFHLAFAAPDQAAVDHFHAKALAIGGRDNGAPGLRPDYGAQYYAAFLIDPDGHRIEAVINR
>NZ_CP014274.1|WP_062170383.1|3821150_3822062_-|EamA-family-transporter-RarD
MNTNNDTRNGLWATTLAFVIWGLFPLYWHLLKEVPSFMIIAHRIVWSAVLLVGGLGIVRGWGWLQEVWATPRRFWLLGLSSLLIALNWSLYIWAVNAGHVVETSLGYFINPLLSVLLGVMVLGERLGKLQWLAVALAALGVAWLTWQSGRPPWIAIGLSITFGLYGLLRKVVVVDAVSGLGVESLFMVAPALAYVIWAENGHGGGFISGWGLGNDALLVLAGAVSAIPLIAFAFGVRRVPLTVVGLLQYIAPTLQFLVGVLVFREAFNANQLVGFCLIWAGLVVFAVAGVRKARMARAVSPAA
>NZ_CP014274.1|WP_062170385.1|3822058_3822961_-|drug/metabolite-exporter-YedA
MSSPESAPAAPPRGGLVVLALFLVYVVWGSTYLGIHLALESGLPPLTVISGTRFIIAGSVLYALLRWRGVAAPTRAQWKTLAVMGLCLLFLGNGMVVLAERDVSSGLAAVAVASVPLWMALFSAIRGEKVTAGEWLGIAVGFVGVVWLNAGSSLTATPTGLILLLIAPLGWAAGSIWSRGRDLPSPFMTAAGQMLCGGLILVSAGLLRGERINAWPSLQGLLSVSYLTVFGSIIAFTAYVWLLHNVRPVLASSYAYVNPVIAVALGVWIAHEHFSVSDLGAMAVILAGVVVITLARLRRA
>NZ_CP014274.1|WP_062171869.1|3823159_3824494_+|MFS-transporter
MNTPTATAPAASDRAALRRSISNTLKGSAGNLVEWYDVYVYSVFAVYFESQFFSAADKNSTIYVWAIFAATFLMRPIGAWYFGRFADRYGRRRALTVSVTVMAACSFLIAITPTATQIGGAAALILLIARLAQGFATGGEYGTSATYMSEAAIPGRRGFLSSFHYVTLVGGHVLAQLTLLAMLLLWDKPEISAWGWRIAFGIGGIAAIVVFWLRRSMDESLNQDQIEAAKEGRAKASGSMYELFVHQWRPLLLCFLITAGGTVAFYTYSVNGPKMIQSAFAGNDVMTGTLINLGVLTFLMLLQPVGGWLSDIVGRKSLLVFFGVGGVLYSWYMITALPQQHDALKAFLVLAIGFVILTGYTSINAVVKAELFPTHVRALGVGFGYAMANSLFGGTAPLLYQGALKTGHVDTFAIYVTAVIAVSLVVYVFFLKNKGPNWLDGTRQ
>NZ_CP014274.1|WP_062170387.1|3824633_3826286_-|M28-family-peptidase
MRILLLSSCLFVGGVASAANDLPGGGIDPEALSRHVRILASDEFEGRAPASKGEQRTIDYLVEEFRKAGLQPGGKDGSWVQEVPLVRATVNGEVAASLSLNGKAQPLVNGEDITLQSLSPLGVVDQQDVPLVFIGYGISAPERHWDDYKDMDLSGKIAVVLINDADFESEAPGAFDGKAVTYYGRWTYKFEEAARRGAEGVLIVHETAPAAYPWATVKASGTSPLFDIERSQEEALAAHTPVRGWMQRALAERIFSAAGLDFEAEKRKAMRADFQPVALGDAQLSTSFWVDRERVVSRNVVAKLEGSSHPQESVIFSAHWDAFGIGQPDANGQTVRHGAIDNATGVASVLELGRVFAAGPRPQRSLYFIALTAEEKGLLGASYYAAHPLAPLETTAAVLNIEMFSPDGETADIATWGNGRVSLENDVQRVAQARGRRWSPDPNLEAGFFYRADHFAFARKGVPAITVGAGLDKLDGGVAAGRALRDAYFAKCYHQACDAWTPQWDARGLAADTLLVYDLGLELANSRQWPSWQKGAEFEAAREASDAARR
>NZ_CP014274.1|WP_062170389.1|3826735_3827668_-|MBL-fold-metallo-hydrolase
MSIAHGIHTIDTAFQRDHFDAAYLIVQDGRGAFVDCGTSHSLPHLLTCIAQAGLQPADIDWLILTHVHLDHAGGAGALMQQLPNAKLLVHPRGAQHMIDPARLIAGATAVYGQDEMARSYGEIVPVPAERVVVAEDGHSVSLAGRTLVCVDTPGHARHHFCVWDATSRSWFSGDTFGLSYRELDHAGGAFIIPTSSPVQFEPEAMHASIERLMREAPEAMYLTHYGRVEGTARLAKELHEQIDAMVAIALRCKGEPERHRLLVDALGALYVARLRLQGSPLDAAEVLRVLAMDIELNAQGLACWLDREKR
>NZ_CP014274.1|WP_062170391.1|3827753_3828047_-|hypothetical-protein
MAWLSLLLFLPWFCVMGALYWWFPRQPRSRRRRLFDTAMLVLALVASIGFMLWGYQVGAAEVPEGLWKQILAVLYAYGGFLAVMVLALLLRPRVLQP

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Crispr_ID: NZ_CP014274_20

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_20

3988728-3988860

Orphan

Consensus_repeat	Method
GGGAGAGGGGTTGGGGTGAGGGCAGCTTTGGCCGGTAAAGCCCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014274_20

>merge|NZ_CP014274|20|3988728-3988860|CRISPRCasFinder
GGGAGAGGGGTTGGGGTGAGGGCAGCTTTGGCCGGTAAAGCCCCTGCCGAGCATGGCTCGGCACTACCGTTTTAGCCCCTCTCCCTTTGGGAGAGGGGTTGGGGTGAGGGCAGCTTTGGCTGGTAAAGCCCCT

>NZ_CP014274|20|19|3988728-3988860|CRISPRCasFinder
GGGAGAGGGGTTGGGGTGAGGGCAGCTTTGGCCGGTAAAGCCCCT	GCCGAGCATGGCTCGGCACTACCGTTTTAGCCCCTCTCCCTTT
GGGAGAGGGGTTGGGGTGAGGGCAGCTTTGGCTGGTAAAGCCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_057630770.1\|3986410_3986719_-\|mitomycin-resistance-protein	unknown	unknown	gnl\|CDD\|371697
NZ_CP014274.1\|WP_062170615.1\|3986753_3987668_-\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP014274.1\|WP_062170617.1\|3987667_3988465_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|379293
NZ_CP014274.1\|WP_062170606.1\|3983544_3983880_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226461
NZ_CP014274.1\|WP_062170602.1\|3980938_3981322_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062170625.1\|3990341_3990596_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_CP014274.1\|WP_062170631.1\|3995315_3996503_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP014274.1\|WP_062170621.1\|3988895_3989534_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NZ_CP014274.1\|WP_062170623.1\|3989648_3990239_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225002
NZ_CP014274.1\|WP_062170600.1\|3979605_3980886_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP014274.1\|WP_062170629.1\|3991742_3995225_+\|type-I-restriction-modification-system-endonuclease	unknown	unknown	gnl\|CDD\|236912
NZ_CP014274.1\|WP_062170609.1\|3983882_3984605_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NZ_CP014274.1\|WP_062170633.1\|3996499_3998050_+\|type-I-restriction-modification-system-subunit-M	unknown	unknown	gnl\|CDD\|280533
NZ_CP014274.1\|WP_062170637.1\|3999410_4001222_+\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|226003
NZ_CP014274.1\|WP_062170611.1\|3984677_3985643_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187563
NZ_CP014274.1\|WP_062170627.1\|3990652_3991426_-\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197320
NZ_CP014274.1\|WP_062170613.1\|3985639_3986371_-\|suppressor-of-fused-domain-protein	unknown	unknown	gnl\|CDD\|377450
NZ_CP014274.1\|WP_156455900.1\|3998046_3999381_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236619
NZ_CP014274.1\|WP_062170639.1\|4001306_4003214_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182323
NZ_CP014274.1\|WP_062170604.1\|3981650_3983435_-\|DUF885-family-protein	unknown	unknown	gnl\|CDD\|227142

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_057630770.1\|3986410_3986719_-\|mitomycin-resistance-protein	gnl\|CDD\|371697	pfam11731, Cdd1, Pathogenicity locus. Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.	1.42508e-38
NZ_CP014274.1\|WP_062170615.1\|3986753_3987668_-\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	1.85011e-71
NZ_CP014274.1\|WP_062170617.1\|3987667_3988465_-\|ParA-family-protein	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	5.14556e-89
NZ_CP014274.1\|WP_062170606.1\|3983544_3983880_-\|hypothetical-protein	gnl\|CDD\|226461	COG3952, COG3952, Predicted membrane protein [Function unknown].	6.79759e-32
NZ_CP014274.1\|WP_062170625.1\|3990341_3990596_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	1.42623e-09
NZ_CP014274.1\|WP_062170631.1\|3995315_3996503_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	2.34536e-83
NZ_CP014274.1\|WP_062170621.1\|3988895_3989534_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	1.54476e-82
NZ_CP014274.1\|WP_062170623.1\|3989648_3990239_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225002	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism].	1.22825e-29
NZ_CP014274.1\|WP_062170600.1\|3979605_3980886_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.71536e-15
NZ_CP014274.1\|WP_062170629.1\|3991742_3995225_+\|type-I-restriction-modification-system-endonuclease	gnl\|CDD\|236912	PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional.	0
NZ_CP014274.1\|WP_062170609.1\|3983882_3984605_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	8.03474e-51
NZ_CP014274.1\|WP_062170633.1\|3996499_3998050_+\|type-I-restriction-modification-system-subunit-M	gnl\|CDD\|280533	pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.	1.75562e-85
NZ_CP014274.1\|WP_062170637.1\|3999410_4001222_+\|DUF262-domain-containing-protein	gnl\|CDD\|226003	COG3472, COG3472, Uncharacterized conserved protein [Function unknown].	4.35668e-63
NZ_CP014274.1\|WP_062170611.1\|3984677_3985643_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187563	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs. This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.01173e-170
NZ_CP014274.1\|WP_062170627.1\|3990652_3991426_-\|exodeoxyribonuclease-III	gnl\|CDD\|197320	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	9.13911e-138
NZ_CP014274.1\|WP_062170613.1\|3985639_3986371_-\|suppressor-of-fused-domain-protein	gnl\|CDD\|377450	pfam05076, SUFU, Suppressor of fused protein (SUFU). SUFU, encoding the human orthologue of Drosophila suppressor of fused, appears to have a conserved role in the repression of Hedgehog signaling. SUFU exerts its repressor role by physically interacting with GLI proteins in both the cytoplasm and the nucleus. SUFU has been found to be a tumor-suppressor gene that predisposes individuals to medulloblastoma by modulating the SHH signaling pathway. Genomic contextual analysis of bacterial SUFU versions revealed that they are immunity proteins against diverse nuclease toxins in polymorphic toxin systems.	5.49769e-50
NZ_CP014274.1\|WP_156455900.1\|3998046_3999381_+\|hypothetical-protein	gnl\|CDD\|236619	PRK09737, PRK09737, type I restriction-modification system specificity subunit.	1.78969e-66
NZ_CP014274.1\|WP_062170639.1\|4001306_4003214_+\|hypothetical-protein	gnl\|CDD\|182323	PRK10236, PRK10236, acidic protein MsyB.	3.29147e-08
NZ_CP014274.1\|WP_062170604.1\|3981650_3983435_-\|DUF885-family-protein	gnl\|CDD\|227142	COG4805, COG4805, Uncharacterized protein conserved in bacteria [Function unknown].	0

>NZ_CP014274.1|WP_062170617.1|3987667_3988465_-|ParA-family-protein
MARIIAIANQKGGVGKTTTAVNLAASLAAAPKRVLLVDLDSQGNATMGSGVDKREVAASTCDLLLGENTAAEVRVTTPEGFDLLPGNIDLTAAEIQLMDQSEREQRLKRALAPIRDEYDYILIDCPPALSLLTLNALAAADSVIVPMQCEYYALEGLSALVETIDALKINLNPALEIEGVLRTMFDVRNNLANAVSAQLTEYFGDRVFRTIVPRNVRLAEAPSHGQSIVGYDRASRGGVAYLGLAGEIIRRNNESKQPSRAVEAV
>NZ_CP014274.1|WP_062170615.1|3986753_3987668_-|ParB/RepB/Spo0J-family-partition-protein
MSAAKKRGLGRGLDALLGPKGAVTPVTVAAVSEPQPGEVLRKLPIDQLQPGKYQPRRDMDEGKLAELAESIKAQGIIQPILVRQIEGGRYEIIAGERRWRASRLAGLDEVPAVVRELEDRTVIAMALIENIQREDLNPLEEAEALARLVSEFSLTHAEAAQAVGRSRASVSNLLRLIDLPIGVRVLLETRRLEMGHARALLTLAPELATKLAEEAAEQGWSVREVEHRAQQFAAGKVPGARKAKPSPSAPQADIASLETELSESLGAKVAISHGRGGKGKLVIHYTDLDTLDGVLERLRVRQNG
>NZ_CP014274.1|WP_057630770.1|3986410_3986719_-|mitomycin-resistance-protein
MNPTKVDRNHLLRLTDLPNVGPACEKDLRLIGIRVPAHLRGRDAYDMYAQLCLKTGVVHDPCVIDVFLSVLRFMGGEAPQPWWAYSKERKETLAKEAPLTMW
>NZ_CP014274.1|WP_062170613.1|3985639_3986371_-|suppressor-of-fused-domain-protein
MGKVSEQISPGGSRILSHAQGSDFAPARGHAHADAISAHVEHHLGPVSNVLHEIVADTVQVDVLVVPPGADCPNTRLVTCGMSALPMQLPDDVDASPFLELMLTLPGHWPLEHAQLQDERNYWPIRLLKTLARLPHRHNTWLGLTHTVPNGDPAQPYAPRVAFDGAILLLALSAPEDFDTLVVDDDTSIEFLSVVPLYPQEMALKLREGADALIDLLSDHDIGDVIEPGRHNPAREYLPGISA
>NZ_CP014274.1|WP_062170611.1|3984677_3985643_-|SDR-family-NAD(P)-dependent-oxidoreductase
MTILVTGAAGFIGAYTCQALAARGERVVGLDNYNDYYDPQLKRDRVAALCPQLDIRALDLTDRDGLAALFDEVQPTRVIHLAAQAGVRYSLENPHAYVESNLVGFVNMLELCRHRGVQHLVYASSSSVYGNSATPPFSEDQRVDQPRSLYAATKAANELMAYTYAQLYGLKATGLRFFTVYGPWGRPDMAPLLFSRAVLAGRSIDVFNDGHMRRDFTHVSDIVAGILGALSHPSAQATPHQVFNLGNHTPVELEHFIDVIAAAAGHPAHKVYKPMQPGDMVETMADTSRAQAAFGYAPNTPIELGLPPVVEWCRSYFGSRA
>NZ_CP014274.1|WP_062170609.1|3983882_3984605_-|glycosyltransferase-family-2-protein
MNQPSLSVVVPVFNERDNVTPLVNEITAALRGLVDFEIVYVDDNSKDDSLQVLQALKTANPELRVLHHVSQSGQSTAVRTGVKAARAPWIATLDGDGQNDPADIPKLLAARGGAEAQVKLFAGWRVNRQDSGSKRWASKWANAIRARMLRDDTPDTGCGIKLFERAAFLDLPYFDHMHRYLPALMQRAGWKTVSVPVNHRHRTAGVSKYNNLGRALVGIRDLRGVAWLITRSKRTAVEEV
>NZ_CP014274.1|WP_062170606.1|3983544_3983880_-|hypothetical-protein
MEFMNQPLVWLEWTGLHMSPWKLIGLTGALMFGGRWLVQFVASRRAGKPVIPRLFWYMSVLGSLMTLSYFLFSSKQDAVGVVQNLFPAFTALYSLRLDIKHRGWQRDKAGH
>NZ_CP014274.1|WP_062170604.1|3981650_3983435_-|DUF885-family-protein
MKSPLTVALLLTLGLSATPAFAATASAPATLATQSLDDQFKAIYEKEWAWRQTGGGEASEDSDASANSTRLPDVSAAAQQARLKVWDEVLAQLKAIDPAKLSAENQVNYAIYKYQVESLAEEVRLRSYEMPFNSDSSFWSNLSFMARGEMKTATEYRNYIARLNDVPRYFDQQMVNMRAGLARGFSVPRAVLEGRDVSISTVAELKDPTESPLYEPLKKLPSSIPAAEQAKLQAEARQAISGSVVPAFGKLLTFYREEYVPQSRTTLAAEAMPGGKEFYQAQIREYVTLDMSPQQIHAQGLSEVNRIQQQMNAIIDKLGFKGKSEQTRFADFLEFLRTDPQFYAKTPDELLWRAAWISKRVDGVIGKFMTLPRARFTIVPVPPDIAPFWTAGRGGMSTYWLNTYNLPARPLYNLPALTLHESDPGHALQGALAAEQTGQPEFRRSAYISAYGEGWGLYTEKLGIDMGIYQTPYEDFGRLTYEMWRACRLVIDTGVHHYGWDRDRAIAYLRDHTALSEHEVTTEVDRYISWPGQALSYKLGEITIVKLREKAEKELGDKFDIKGFHDAVLKQGSVPLPVLEQQINAYIAERKAAK
>NZ_CP014274.1|WP_062170602.1|3980938_3981322_-|hypothetical-protein
MLQSLRHRRLYLLRLLMLALVGLGVFCTSMAAALTDIHMLAHTDIGADVHEHDDAKLAMAPDAEDSANALLHALVHCVDCHGHGGVLPTVTPAWILSSPPGQQAVVALGTQAVSHPTESLFRPPIAV
>NZ_CP014274.1|WP_062170600.1|3979605_3980886_-|TolC-family-protein
MWMRLAAVVAFALVPRAYAQVPASAVPLTLDDAIVRVALDHPDLRLIDAQRPVLEARRDAALLRPPMQLGVELENLLGSGDTRGVQGAEATVSLSGVLERGDKLDARRMLAQANIDALAPQRATARLDLLAETARRYLAVAQAQSALQIANTDIEQRRRAVDAARLRLQAGASPESVLFTAQAMLAQAELDRDRAIEQARTARLSLAALWGARSADFTVVSGDALQLPALREFAQLDDELKRAPELAELLGEQRIREAQLQLVRTRSRPDWSWQAGVRNSRADNATSLVGGFSIPLGSARRAAPEIREAEADLALLPYQRQARQQQLYATLAEAHGRYVTARLEVQRMQADVLPQLQKAERAAERAWRAGAASYMEWAQLQAMRIEARQRQLDAAITAHTALIEIQRLTGQGMLATDVTVAVENAR
>NZ_CP014274.1|WP_062170621.1|3988895_3989534_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MNDTTLPREVASDLDHGLKAMGLDAALAQPLLAYLTLLVRWNRTYNLTAIRDPREMVTRHLLDSLAMAEHVSSGSLADLGTGPGLPGIPLAITHPQLQVTLVESNGKKARFMREAVRQLGLGNARVAESRAEALDEPGAYDNLTARAMDTLAGIIEVGGHLLRPGGQLLAMKGVYPHEEIAQLPPGWQVLEVRPLQVPGLVGDRHLVVVERK
>NZ_CP014274.1|WP_062170623.1|3989648_3990239_-|4'-phosphopantetheinyl-transferase-superfamily-protein
MSQADRNWRFGPVEVWLLPHTAGARGEPQARELLAGVFGTTPQALPLTRDERSRPWLIGELAHYGTGWSHSGGHLLVALGEGARLGVDLERQRPRRQMREVIRRFFHPDEIAWLQGLDDAGCEHWFFRVWCAKEALLKAHGHGISFGLEKLRFAPDADGVLQLVWCDPGLGDAARWHLHEWQATEDFRAALAWYPL
>NZ_CP014274.1|WP_062170625.1|3990341_3990596_+|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGIIIWLIVGGVVGWLASIIMRRDAQQGIILNIVVGIIGALIAGFFFSGGSINGAITVRSFLLSLVGAVVLLAIVNLFTRKSVR
>NZ_CP014274.1|WP_062170627.1|3990652_3991426_-|exodeoxyribonuclease-III
MKIASWNVNSLNVRLPHLEQWLADFAPDVVGIQETKLEDHKFPDTRLLELGYRNVFAGQKTYNGVALLSRHPIEDVQIGIPGFEDEQKRVIAGTVNGVRIINLYVVNGQDVGTDKYAYKLRWLDAVHAWVAAELQKHPQLVVMGDFNIAPDDRDVYDPAVWNGDHILTSTAERGALQKLLDLGLHDAFRLHNDAAGIFSWWDYRAAGFRRDLGLRIDLTLVSDALKPRAAASGIDREPRTWERPSDHAPAWVQLAQG
>NZ_CP014274.1|WP_062170629.1|3991742_3995225_+|type-I-restriction-modification-system-endonuclease
MSANQGNFSFLGQHDPVLLRLATTAEQVFASDPNTTLIKLRQLGEALAQALASQAGLKFDAQTTQLDLIQLLSRHLDLDPGIRNLFHTLRVEGNRATHGFSTQHREAMDGLRVARELSVWYHRASGKADSTFRPGAFTAPADPSAALRALHGQIDTLEQELRQRDTALEGSRKLSELRAQESEQSMALAEAMDEEARALKAQLDERQVQFEQERIQFHAQLHALQQASSADQQQTSALAKRSRQAAAAFDPDEELTRILIDQQLRDAGWEADSLQLTWSKGTRPEKGRCMAIAEWPTRSAKACADYVLFDGLMPVAIVEAKRRRVNIAGCIDQAERYSREFPIAAPLQLAGIGPAHGPWADGLGTQFQVPFAYACNGRPWIKQLAEQSGIWFRDLRSPANLKRPLQQFHTPQGLAELMLRDRELAEQRLSTEPYGYLKLRGYQQDAIAAVERALAAGQRHCLLAMATGTGKTRTTIGLIYRLLKAERFTRVLFLVDRTSLGTQAREAFDDMSLEQGQSLSQIYNVNDLGDMAAEAETRVQVATVQAMVRRIFQSDAPPPIDQFDCIIVDEAHRGYTLDQEMTEGELSLRDHAQYLSQYRRVLEYFDACRIGLTATPARQTTEIFGRPVYTYSYREAVADDWLIDHEPPIRFETQLSRNGIHFDKGELVEVVNALTGEVDSAELDDELSFDIESFNRSVITADFDRVICQALADELDPLGDEKTLVFCVNQVHAVRVCNLLNDAFHQVYGEAWNQAAVQVITGRTDDVAKVIRRYKTERLPSVAITVDLLTTGIDVPAITNLVFMRRVRSRILYEQMKGRATRRCDDIGKTVFRIYDPVRLYEALEPVDTMRPLVKDPNISVGQLLHELQDPRSHQPGSSPDAPSHAQDVLDQLSQKLMRVLRRANHKAQNREPLRKQLEQLETAWGLEPAKLHQHLHALGPEQAASFISTRLPALEAQIDELRALLASEQYPIISHHTDKLLVREVSYGGNNQKPDDYLESFNDFIRSQLNQSAALAAVVNRPRDLTREQLREVRLLLDGKGYSEAHLHSAERQQSNRDIAAGIIGYIRRAAIGEPLLPYEQRVNKALDRILSRRNWTPVQQRWLKRLANQLVTEVVIDRDSIQSACAPDGGVKLLDTVFAGELDQLIDQLKEAVWEQVA
>NZ_CP014274.1|WP_062170631.1|3995315_3996503_+|Fic-family-protein
MDSNPTPTAPLWIWQQPSWPAFVHQDAALAPLLRQCQQAQGQLSALAGVLPEDGRQALDTLLQNIVTSSAIEGENLNVGSVRSSLARRLGIPDAAEPAPHSARAEGVAELMLDATGDTGKPLDLPRLLHWHALLFAGHDGLLPLRIRIGQLRGDEPMQVVSGRIDRPTVHFQAPPRQGLDEQLQHFLAWFAASTDDPALDPLLRAGIAHFWFVTLHPFDDGNGRLTRAITDLALAQAAPRIARLYAMSASILDDRKGYYRILETSQRGGLDISAWLHWFLQTLLHSLLQALARIQRVIDKARFWQLHAQQALSAEQAKVLNRLLDGGERGFANGINASQYQAVAKVSKATATRHLTDLLDKGCLRRLPGGGRSTRYQINLPGHAGNAIPSGDGSQ
>NZ_CP014274.1|WP_062170633.1|3996499_3998050_+|type-I-restriction-modification-system-subunit-M
MTNNDIVAKLWNLCDILRDDGINYSDYVTELVLLLFVKMEYEQAQSNDNFEHRLPKGARWPDLTSKSGVPLHTFYKQMLLNLSQNSDPMVAAIYTDAQTRLKEPRHLEQLIKSLDGLDWFSARQDGLGDLYEGLLEKNAGETKSGAGQYFTPRPLIDSIVRCIQPQLGEIIQDPAAGTAGFLIAADAYIKAEHDDLYGPKVTDKARKFQRNKAYTGVELVPGTRRLALMNCLLHGMHGEDEGVVRLGSSLGSLGEKLPRADVILSNPPFGTAKGGGGPSRDDLPFVTSNKQLAFLQHIYRNLKPHGRAAVVLPDNVLFEAGVGTDVRRDLMDKCELHTILRLPTGIFYAQGVKTNVLFFRKGSATNSKQDTGCTQHVWVYDLRSNMPSFGKRTPFGATHLKPFEDAYGTDRDGGSPRADEGEEGRFRCFTRAQIAERGDSLDISWLKDADAVDAANLPPPEELAAQAMAELSEALRELDALMQALGAGDEANQQKQLLAQVLGMEIGEMTNQGSVL
>NZ_CP014274.1|WP_156455900.1|3998046_3999381_+|hypothetical-protein
MNWKIPESWCVVDLDTICNRITDGSHNPPAGMPSGLPMLSAKNIKARKISFDEYRLISQDAFDHEDKRTSITPGDVLLTIVGAIGRTAIALDSHQKFTLQRSVAVLKPDAIASKYLSYLLESPEAQSFFEKNAKGTAQKGIYLKTLGGMKVPVAPVAEQARIAQALDGLLAQVDTLKARLDTLPALIKHFRESVLETATSGKLTENWRKNYGNREWKSIAVGELCRLKSGIAASIDLEHHEGSHKYFKVGEMNLKGNELYLHETGRYLSLDDFSEKALLPAGSIVFPKRGGAIATNKKRILKEESFVDLNVMGLIVPTGVEVLYVYRWLETIDLAKLNTGTAIPQINNSDIAPLIIPLPPSDEQYEIVRRVEQLFVFADQLEARLADARQRVDALTQSILAKAFRGELVPQDPNDEPASVLLERIAAQRAAEPKPKRGRKTAAH
>NZ_CP014274.1|WP_062170637.1|3999410_4001222_+|DUF262-domain-containing-protein
MTTFDSTKLPLKELLKDIVQGKIQLPDFQRGWVWDDEHVRSLLVSLGRSFPVGAVMLLETGGQVRFQVRPVENVPEQGLLAPEQLILDGQQRLTTLTQVLKLDGPVQTRNEKGRDVQRYYYIHIPTALDGPDRLDDAIITTDETRQQRSEFKRKLDLDLSTRELECQHLYFPCSAILDPMSWLKDLYQHNPGAVAQFFEFKDAVLDAYNEYQLPLIVLKKETSKEAVCLVFEKVNTGGVPLSVFELVTASYAADGYNLRDDWYGSAQRKTPSRYKRMKNAEALLETVQNTDFLQSITLLHTLQRRREDIAANKQGKSIAPVSAKRSAVLELPLDAYKQRADALEGGFVQAARFLRDECVRQTRDLPYRTQLAPLAAVMAELGPNRWREPRIYQKLASWYWCGVLGELYGGAVETRVANDVEDVLAWLDDDSQVPRTVQDANFQADRLKSLRSRQSAAYKGVNVLVQRGGAKDFYWKSSIRELDADDVALDIHHIFPRDWCIKQGIEAKVYDSIINKTAISYRANRKIGGAAPSQYLSSLQQDKQVQLGDTEMDAVLQSHGIPSAAMRSDDFDGFYAQRSEGLMSLIKAAMAKTSANDQPSGSN
>NZ_CP014274.1|WP_062170639.1|4001306_4003214_+|hypothetical-protein
MSMESTTQSLDICGNDYLVDRILAALPSDVRGLLFNLTDGEDGRLATGSAVKKLCQTILKHDTLTRGAAEVLVAELQHYGGNALANVVRGSGISYEQLLEDTLTYLGHTGPKDKKVQLLEETLLRQQLKILWEHGTAVDQEKIATTLECEASFSAANTALDGKAGLLRLAQLLCSSDFDTAALHQNSSPVENASGGAGGAIGGLLGFAVGKVAASKLPPSMKGKLNNMVSSHRVTLPCINHLIRLRLVQQSNEAIAEPGTAGKAFEPLEIPTTESLVVEDGHGEHAISIMQAAITGMPAHGRRINPKKQGISRLSSLMQAAPTALAANAISGENYMKVVINGPLQLARDGNGFRGFSHDGKHITEHARLFEGNISDVVNAGALFNVASFALAQKHLADISARLDQIKKDVDKIASFQKLERDSVMKGAIEYLQQVAPVVLEGDLRPAIEQKLEDYESELLAKQKHLKAELDAILDQVKNAKDEGKFGMGTFRDKLIELQTEFQESANQWKLCLAARMMACRLLCSFPGTALTVKVREKAIREDLNQMLGEHGLAGLIETALNAHLGAFSAYGDSRIELQASRETLKIIQMATLPPLQQDALQLQREFDSLMLENEKPVELLISVRDGQVQEAVVL

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Crispr_ID: NZ_CP014274_21

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_21

4027840-4027926

Orphan

Consensus_repeat	Method
CAGCTCTCTCTGGTTCCTATTTTCCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014274_21

>merge|NZ_CP014274|21|4027840-4027926|CRISPRCasFinder
CAGCTCTCTCTGGTTCCTATTTTCCTGCCCCCTAGTTCCTGCTCCACCGCTCCACCGCTCCAGCTCTCTCTGGTTCCTACTTTCCTG

>NZ_CP014274|21|20|4027840-4027926|CRISPRCasFinder
CAGCTCTCTCTGGTTCCTATTTTCCTG	CCCCCTAGTTCCTGCTCCACCGCTCCACCGCTC
CAGCTCTCTCTGGTTCCTACTTTCCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062170692.1\|4055537_4057337_-\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NZ_CP014274.1\|WP_062170651.1\|4012503_4013445_+\|ribokinase	unknown	unknown	gnl\|CDD\|238579
NZ_CP014274.1\|WP_062170653.1\|4015667_4017524_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369609
NZ_CP014274.1\|WP_062170655.1\|4017688_4018882_+\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_CP014274.1\|WP_062171939.1\|4057916_4060691_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP014274.1\|WP_062170670.1\|4024081_4025515_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|107089
NZ_CP014274.1\|WP_062170687.1\|4049261_4051409_-\|S46-family-peptidase	unknown	unknown	gnl\|CDD\|371067
NZ_CP014274.1\|WP_062170659.1\|4021893_4023615_-\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|236495
NZ_CP014274.1\|WP_062171937.1\|4051680_4055493_-\|translocation/assembly-module-TamB	unknown	unknown	gnl\|CDD\|225463
NZ_CP014274.1\|WP_062170678.1\|4030661_4034102_-\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|271357
NZ_CP014274.1\|WP_062170661.1\|4023611_4023929_-\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|377315
NZ_CP014274.1\|WP_156456002.1\|4018892_4019858_+\|transaldolase	unknown	unknown	gnl\|CDD\|235381
NZ_CP014274.1\|WP_082746651.1\|4034597_4035965_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|236764
NZ_CP014274.1\|WP_062170676.1\|4029372_4029981_+\|manganese-efflux-pump-MntP-family-protein	unknown	unknown	gnl\|CDD\|224882
NZ_CP014274.1\|WP_156455901.1\|4039004_4048043_-\|DUF11-domain-containing-protein	unknown	unknown	gnl\|CDD\|380149
NZ_CP014274.1\|WP_062170674.1\|4027944_4028610_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP014274.1\|WP_082746650.1\|4013481_4015671_+\|formylglycine-generating-enzyme-family-protein	unknown	unknown	gnl\|CDD\|224182
NZ_CP014274.1\|WP_062170685.1\|4048374_4049115_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP014274.1\|WP_062170672.1\|4025753_4027697_+\|acetate--CoA-ligase	unknown	unknown	gnl\|CDD\|234677
NZ_CP014274.1\|WP_062170657.1\|4020164_4021580_-\|coniferyl-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143451

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062170692.1\|4055537_4057337_-\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	4.99224e-136
NZ_CP014274.1\|WP_062170651.1\|4012503_4013445_+\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	5.1453e-95
NZ_CP014274.1\|WP_062170653.1\|4015667_4017524_+\|hypothetical-protein	gnl\|CDD\|369609	pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127. One member of this family, from Bidobacterium longicum, UniProtKB:E8MGH8, has been characterized as an unusual beta-L-arabinofuranosidase enzyme, EC:3.2.1.185. It rleases l-arabinose from the l-arabinofuranose (Araf)-beta1,2-Araf disaccharide and also transglycosylates 1-alkanols with retention of the anomeric configuration. Terminal beta-l-arabinofuranosyl residues have been found in arabinogalactan proteins from a mumber of different plantt species. beta-l-Arabinofuranosyl linkages with 1-4 arabinofuranosides are also found in the sugar chains of extensin and solanaceous lectins, hydroxyproline (Hyp)2-rich glycoproteins that are widely observed in plant cell wall fractions. The critical residue for catalytic activity is Glu-338, in a ET/SCAS sequence context.	2.407e-79
NZ_CP014274.1\|WP_062170655.1\|4017688_4018882_+\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	2.90787e-137
NZ_CP014274.1\|WP_062171939.1\|4057916_4060691_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	9.28111e-49
NZ_CP014274.1\|WP_062170670.1\|4024081_4025515_-\|hypothetical-protein	gnl\|CDD\|107089	PHA01819, PHA01819, hypothetical protein.	0.00097962
NZ_CP014274.1\|WP_062170687.1\|4049261_4051409_-\|S46-family-peptidase	gnl\|CDD\|371067	pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7 (DPP-7) is the best characterized member of this family. It is a serine peptidase that is located on the cell surface and is predicted to have two N-terminal transmembrane domains.	0
NZ_CP014274.1\|WP_062170659.1\|4021893_4023615_-\|cation-acetate-symporter	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_CP014274.1\|WP_062171937.1\|4051680_4055493_-\|translocation/assembly-module-TamB	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP014274.1\|WP_062170678.1\|4030661_4034102_-\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|271357	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain. This family represents the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporter family or solute sodium symporter family) that co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. Family members include: the human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5), myo-inositol (SMIT), choline (CHT), iodide (NIS), multivitamin (SMVT), and monocarboxylate (SMCT) cotransporters, as well as Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) has 13 transmembrane helices (TMs): TM-1, an inverted topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). One member of this family, human SGLT3, has been characterized as a glucose sensor and not a transporter. Members of this family are important in human physiology and disease.	5.23423e-69
NZ_CP014274.1\|WP_062170661.1\|4023611_4023929_-\|DUF485-domain-containing-protein	gnl\|CDD\|377315	pfam04341, DUF485, Protein of unknown function, DUF485. This family includes several putative integral membrane proteins.	2.15475e-35
NZ_CP014274.1\|WP_156456002.1\|4018892_4019858_+\|transaldolase	gnl\|CDD\|235381	PRK05269, PRK05269, transaldolase B; Provisional.	0
NZ_CP014274.1\|WP_082746651.1\|4034597_4035965_-\|OmpA-family-protein	gnl\|CDD\|236764	PRK10808, PRK10808, outer membrane protein A; Reviewed.	1.73273e-22
NZ_CP014274.1\|WP_062170676.1\|4029372_4029981_+\|manganese-efflux-pump-MntP-family-protein	gnl\|CDD\|224882	COG1971, COG1971, Predicted membrane protein [Function unknown].	1.9231e-60
NZ_CP014274.1\|WP_156455901.1\|4039004_4048043_-\|DUF11-domain-containing-protein	gnl\|CDD\|380149	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD. Features of this protein family include a YSIRK-type signal peptide at the N-terminus and a variable-length C-terminal region of Ser-Asp (SD) repeats followed by an LPXTG motif for surface immobilization by sortase.	8.86157e-23
NZ_CP014274.1\|WP_062170674.1\|4027944_4028610_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.88015e-58
NZ_CP014274.1\|WP_082746650.1\|4013481_4015671_+\|formylglycine-generating-enzyme-family-protein	gnl\|CDD\|224182	COG1262, COG1262, Uncharacterized conserved protein [Function unknown].	3.22799e-31
NZ_CP014274.1\|WP_062170685.1\|4048374_4049115_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	4.35506e-15
NZ_CP014274.1\|WP_062170672.1\|4025753_4027697_+\|acetate--CoA-ligase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
NZ_CP014274.1\|WP_062170657.1\|4020164_4021580_-\|coniferyl-aldehyde-dehydrogenase	gnl\|CDD\|143451	cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.	0

>NZ_CP014274.1|WP_062170672.1|4025753_4027697_+|acetate--CoA-ligase
MTDVYPVDPAFAAKARIDKNTYQQLYRESVENPDVFWAKAAERLDWFKKPTRIKNVSYKLDDFRIKWFEDGELNVSVNCLDRQLATRGDKTAILFEPDGPDSPAQKVTYRELHERVCRLGNALRNLGIKKGDRVTIYLPMIVDAAVAMLACARVGAIHSVVFGGFAANSIADRVGDCASKLIITADEGLRGGKKVPLKANVDAALKLPGTNTVETVLVVRHTGGAVDMQAPRDRWFHDVVDTQPTECEPERMNAEDPLFILYTSGSTGKPKGVLHTSGGYLLYAAYTHEAVFDLREDDIYWCTADVGWVTGHSYIVYGPLANGATSVMFEGVPNYPNTSRFWEVIDKHQVTIFYTAPTAIRALMRDGEAPVKRTSRKSLRLLGSVGEPINPEAWRWYYDVVGDARCPVVDTWWQTETGGILISPLPGATDLKPGSATLPFFGVQPALVSADGEALEGATEGNLIIRDSWPGQMRTVYGDHQRFIDTYFRTYPGSYFTGDGCRRDEDGYYWITGRVDDVMNVSGHRIGTAEVESALVSHPKVAEAAVVGFPHEIKGQGIYAYVTLIAGEAQTDELLKELVAWVRKEIGPIAAPDHLQWAPGLPKTRSGKIMRRILRKIAENAPDQLGDTSTLADPSVVASLVEERKVR
>NZ_CP014274.1|WP_062170670.1|4024081_4025515_-|hypothetical-protein
MNRNILKTARRPLAAALFVALVAPGMAFAETAKEKALEARVADLERQVQLLLSTQQQQQGAIAQTQSEVVQVRSAQAERVAAPAVPAGKQPIQITTITPGAAPGTTFKVGGFIKADFLATRTGDGQLADDATGRALYLPGQTPVHGAGGSGKASSVDYNAHAKFSRFNLGVDHVADNGDKAGAFLEMDFFGNSLGNQTATNTYGVTVRHAYMYWNKWLAGQTWSNFMDAASIPEAADFVGPTDGVVFVRQAQIRYTTGGLSVALENPETTTLTGAYNPVTGKWNVPGVANSDRGSMPDLTVRYGWKGDWGTFGVAGLVRQLKLDNQLTGADASKVGGGVTVGGKWLMGDTDTLHYQLTGGEGISRYIGLGITADGGYDALRDEIDPTGVIAGYVGWRHAFTPKLRTNLIYARSDYDNDASITGDLVTKSVQSIRGNIFYTPMPKVDVGAELMYGVREIENGKKGDISRVQFTTKYSF
>NZ_CP014274.1|WP_062170661.1|4023611_4023929_-|DUF485-domain-containing-protein
MNASVDPRVERIASNPKYQRLRSTRNKLGWFLTILMLLGYYGYIGLIAFDKAFLATPIGAGKITTVGIPIALGLMVFTIAITGFYVRRANKEFDKLTEEIVEEAQ
>NZ_CP014274.1|WP_062170659.1|4021893_4023615_-|cation-acetate-symporter
MNHSVLRSGALLGLLIASGAAMAAGGDIGQTVRQPTNWTAIIMFATFVLFTLGITKWAAGRTKSASDFYTAGGGITGFQNGLAIAGDYMSAASFLGITAAVMTNGYDGLIYALGFLVGWPILTFLMAERLRNLGRFTFADVAGYRFQAKPIRMFAASGTLVVVLFYLIAQMVGAGALIKLLFGLDYWIAVALVGVLMMVYVLFGGMTATTWVQIIKACLLLSGVTFMAVMVMWHFNFSFEALFSEAVRVKTQIAANGGKNAEEAASTGLAIMGPGGFVKDPISAISFGMALMFGTAGLPHILMRFFTVPDAKQARKSVLWATTWIGYFYILIFIIGFGAIALVLTNPEYADPVTGTIQGGPNMAAVLVGKAVGGNLFMGFISAVAFATILAVVAGLTLSGASAVSHDLYSTVIKKGNPEPGSELRVSRITTLALGVIAVLLGIVFEKQNVAFMVSLAFAIAASANFPVLILSLLWKDCTTRGAVIGGSLGLASSLILTLLSPSVWVDTLGNAAGSAPFPYTSPALFSMTIAFVSIWFFSITDKSKNAQAERAAYPAQQVRAETGIGASKASSH
>NZ_CP014274.1|WP_062170657.1|4020164_4021580_-|coniferyl-aldehyde-dehydrogenase
MDPQTDGSTNLQRQLMQLREAWQQHKPDYDQRRDDLRRLRAVFKTRIPAMTEAIAADFGHRSRHESVIADGMTVTGEIDHLLSHLRGWMRPERIGVGWRFWPARAQVRPLPVGVVGVISPWNYPVNLALVPLATAIAAGNHVMLKPSEHTPNSSAFLQSLLAEVFPADRVAVVQGDAGVASAFSGLPFDHLVFTGSTAIGRKVMAAAAQHLTPLTLELGGKSPALIAADYPLDGAAARLATGKWFNAGQTCIAPDYVLIDEGRVDALVAALRAQVQLRYGDFSDAGDYSRIINEGQYQRLQGYVDDARARGLQVLPLADIDAERSRRERLFPPTLILQPGDDATVMQDEIFGPILPIRSYRSLDEAIATINGRDRPLALYPFSHDKATVEKIVGQTLAGGVTVNDTLLHFAINGLPFGGIGASGMGAYHGKAGFDAMSKRLPVLWQTRRAGSDLLRPPYSRVARFIEMISR
>NZ_CP014274.1|WP_156456002.1|4018892_4019858_+|transaldolase
MMSNASKLAQLRELSVVVADTGDYDAIKRLRPVDCTTNPTLVKKALDLPVYAGLIERELQWGRAQSGDKQAVANAVVDRLTVGVGTMLAELVPGRVSTEVDADQAHNTEATIAKAREFIAMYEAAGVPRDKVLIKIAATWAGVEAARVLQAEGIDCNLTLIFNPTQALACSEAGAFLISPFVGRILDWYVANGQTPASIDEDPGVQFVRGVFAEFKRRGSSTVVMGASFRSTAQIESLAGCDRLTISPDLLEKLDADFGKLPRKLVAGAAEAVNVAAIDEAKFDADMAVDPMATEKLATGIEAFAKDLQTLRQRIADELGG
>NZ_CP014274.1|WP_062170655.1|4017688_4018882_+|CoA-transferase
MSASHNPSPFDIAQREGARGPLSGVRVLDLSAYIAGPYGCTLLADQGAEVIKVEPPVGDNLRKYPSTLEAESRAFLGVNRSKRGVVLDLKETDQRAVLMRLVREADVLVHNFRPSVPARLGIDFESLNKINPRLVYCAVTGYGEGGPLKDKAGYDQVLQTMTGMCAMQGKPGGAPEILYGSVVDYYAAALVAAGVSSALFERERSGEGQYVGVSLLRSALTMQSARMIWAEGEPEGVGRDMRSGGVTGIHPTARGHLYISANTPRFWQALCDKIGLPEMGSDPRYDTVRKRAEHSDELLAKLHAALAARSALEWETLFGEDVPCAAARKVEDMFDHPQVLAEEMITTLPHPLLGSYRGITRPIVFGRTPGPQPFAAPTFDQDTAAVIAAVDDGDTPA
>NZ_CP014274.1|WP_062170653.1|4015667_4017524_+|hypothetical-protein
MSAAISSGQQLIAPAAVKLDGMFGQMLAANRSGRLSHFIVDEHSPSISIFGQAHKQQNQEGDWYGEHAGKWLSATARAVAQGSQPELEANLRRVADWLISQQDEDGYLGNYAADRRFTVPQPPKPESWNGEPALRTWDIWTHSYLILGFLETWRALGDDSYLQAARRIADLCWQALESGIDITTLGNHHGMSATVLLDPAADLYLVTGEPRYLALAEKILQQANANPRLALLDKGIANEDAAFIATGKAYQLSWNLVGLAKLYKATGKADYKLAIDNLWNNIREQHLTLGGGPWGGVAHRSREVFNAPRTFFPQAYVETCSVLAWMQLNRELLAISGHARYADELERTAYNDLLAAMAPNGEDWCYYTFPNGKRVHTTYWRCCKSSGAMAVEELPQIAYGIAADGGLRVNLYGPGEATLNHADAGAVVLQQQTRYPFSGEISLRVSPEHSASFGIGLRIPAWAEDARIQVNGVNVPVQAGADGYVQLQHQWQAGDLVSLQLPMQPQLHRAANINVQESRAPDGSPVAQEVLRWEYVGLSYGPLVYATGLIDGFKTDETVKLPAGDPSRWLQVGEDAGEGATVTMQLECRAPLVFEPYYRCGGREHDVWRLSWLSLAPQ
>NZ_CP014274.1|WP_082746650.1|4013481_4015671_+|formylglycine-generating-enzyme-family-protein
MTSPYPAPDYDNDSPDHGREAIHTEYKFSHVTTGRYLPTPGKAPAWPFADIGSWMIDANASAADWLTELKDWRQEHLVRIGYTDVNYRRPELQWAQRNFVHAQMMVEDRYFFDVETAQYTVDKYLDDLIKRFGGLDSVLIWYIYPNIGIDDRNQFDLAHTLPGGLEGLTAAVKAFQKRGVRVFLPAKPWDHGTRDPGVTHWDGLAEIIKATGADGINGDTFNGVPRAFFDACDANGNPVVVQPESTISSEEQLIWNVQSWGKKAPDGPVPPVSKWKWLEPRHMVNYENRWGRNRNHDLQYCFFNGIGYNAWENIWGIWNQFTARDGETLRRIAAIYRQFPALIVAMEWEPYQVCYQGGIFASKFPVDGLCLHTLINRNEYAVNGEQIGLPHVDGTRYYDVWHGVELSPAVRDGLAIIELPMEARGFGAVLSVQPGAAVEGLDAFLIAAAKRATQPLNSFSGAWKAIPQQLREIPATTVQATAPAGMVTIPAGEFVFAVGGVEIEGFNWAGQDVQFPWEDCPRRHHRKLMQMDAFHIDRHPVTNAQFKAFIDATGYHPADDINFLAHWVDGAPRAGWDNKPVIWVSLEDARAYAAWAGKRLPHEWEWQYAAQGNDGRSYPWGNDWDAARVPQVNRGRRLLAPADVDAHPQGASPFGVEDLVGNVWQWTDEFSDEHTRAAILRGGSSYQPQTSHWYFPQAYRLDQHGKYLLMAPAKDRSGMLGFRCVVDAA
>NZ_CP014274.1|WP_062170651.1|4012503_4013445_+|ribokinase
MTSTVLVAGSANLDFVVRAAHVPAPGETVLGREFRTFPGGKGANQAVACARAGGAATQMLLALGDDDFAKPIEVSLNAAGVTLHTVRDAQLPTGTAFICLSDDAENAITVAPGANMALLPTHLPSLDGVQWLLLQLESPLAAVQAYAAAARAAGVKVALNAAPAQVLPAELLALLDMLIVNEGELAVVAGNPPDLASGLARLDVPCVIVTLGARGCLARIDGQILLQPAFSISPLDTTAAGDTFCGTLIARLAQDAPLQQALLAASAASALACTRLGAQSSIPAHAEVQALLEDASRLPGTDAHAALAAWCAL
>NZ_CP014274.1|WP_062170674.1|4027944_4028610_+|response-regulator-transcription-factor
MPTLLIADDHPLFREALKGAVQRVIPGVQLLEANSVEALYALAEQHPDADLVLMDLNMPGAQGFNALVHLRSLHPQLPIVVVSAREEATVMRRALDHGAFGFIPKSADSDTIGHALGTILDGERWAPAEAHNVPPTPNEEREVGQRLRELTPQQFRVLQMLGVGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMAGKLAIDDDAIVLPPEED
>NZ_CP014274.1|WP_062170676.1|4029372_4029981_+|manganese-efflux-pump-MntP-family-protein
MSPLSIVLIGFAMSTDAFAAAVGKGAAMRKPRLLDALRAGLIFGVIEAITPIIGWLLGRAASQYVQAFDHWIAFGLLGVLGAHMIIAGLKPDDETEADSANDEAGEQHKSFWTLAATGFATSIDAMAIGVGLAFLDVHIGVVALVIGLCTMTMVTIGIMLGRALGALVGKRAEIIGGVILIVIGCAILYEHLHAAAEVVGAV
>NZ_CP014274.1|WP_062170678.1|4030661_4034102_-|hybrid-sensor-histidine-kinase/response-regulator
MVSSWILLLVSLCYAALLFGVAWWGDRRPLYPDRPWLRPVVYSLALAVYCSSWTFYGAVGSAVRYGIGYLPIYLGPLLLLIFGWRIIERLALIARSENVVSIADFISSRFGRSRRLAALVALIALIGVVPYLALQYKAVAMSLQVLTGDAAGKGLLTDPALYVALLMALFAILFGTRQVDATEHHYGMMLAIAVESLIKLLAMVAIGIFAYVWLTDRGDSVVQSARALFEGMPPVGFVSQTLLSFLALICLPRQFHVAVVECGNAGDVRRARWMFGGYLVLISLMIVPIATAGAALFGTGLASDDTLVLALPMSAGSTTLALIAYVGGFSAATGMVIVSSIALATMISNDLVMPLLLRRSGDHKEAANVASRVLWIRRMAIVLLALVAYGYYRGSNDDTMLAAYGLMAFAAVAQFAPGLLGGLYWRGASRRGVETGMLVGFLVWAYTLLLPALSHGGWLDASLLTEGPFGIGWLRPQQLFGLTGWDPLTHGTFWSLLINTVTMLVVSMRWRPDVAERLRAAPFLDPYAKRPVVAGDWPAHVKVRDLLALATRVIGDNRARRSFGEQAQLLDREFQPAAAADRVWVQFTERLLAASIGAASARLLLTSLLRGSGMDLGEVVAVLDEAGQELRFNREILSTTLENISAGVSVVDPEMRLTAWNRRYQQMFGYPDGMLYVGRPVADLIRYNAERGELGSGDTEVQINRRIGYMRAGSPHVFERTGADGKVIELRGQALPGGGYVTSYNDITDFKNAEQALLEANENLEQRVAERSQAAEAAQQSKTRFLAAISHDVLQPLNAARLFASALRDSLHETDEQRHLAERVDASLRAAEELLDGLLDVSRLDAGGLRPTITEFDASVLVRELAAQYTPVAAGRGLRLHVFARAAWVRSDRRLLRRVLQNFMANALRYTRSGRIVLALRVRGDEVELQVWDTGPGIPEHHMQQIFKEFHRYQQPFDWGEQGLGLGLSICQRISRLLDHGLNARSQPGHGSMFSITLPRVPTPTAPVPAPRQQTAFGGDDSLAGMRVLCVDNDQEILDGMRALLGRWKVEVIAASTVDMALEKLSEQPDVMLVDYHLHDRLDGLDTLVALREAAQRPLPGALLTADGRDELKRMARERGYRVLTKPVKPASLRAFLTALNDPRRR
>NZ_CP014274.1|WP_082746651.1|4034597_4035965_-|OmpA-family-protein
MATAAASTAASTQCWSLVVSCTTSPRTGISACSVPPSVASTAPTSSPTAWKWAACCGKTCGCRPVTTGPVLKATAISMATSTRSRASSCACASSSTKTYSAGTRSATATRPAEDDTMTVMQTKNRPLRCVLAVAVFAVAGTAGAQQTQLNPQAKRISDEAIHADLQSYEATQGRIQALNDGGRPIRDYHLSKAQCWLDVSFHEYTRNDRSAFPQEALTESEKLIVDMENGVSPIPTDTALVNDAKYLRADLWQRLKVIHGTPGFACASQKVACGEVELVHAGNEFNQQQWRHSKPYIQIAEDLVNEAETAARLCGVDPAGPAVAPLAAGPLIANVLFEFDRDGYKDIRTYSLESVDRALATIGNEKRELAGVTLVGHADRMQGNGFNYNQALSERRAKTVRELLIGRGVAADKIRYEYRGDTQQVQQCDGVKPRAALLECLLPNRRVEVRFELAQ
>NZ_CP014274.1|WP_156455901.1|4039004_4048043_-|DUF11-domain-containing-protein
MNKQFKQDSDVSHSFDVPTAGRPSRSWLRKACHGGLRGLAALGLMAGLMAAAPAALAYNVGLSSFQDSTSPWLMANGDPSGTNEGSNLTPLGGIVVYDAVIANIEASPVLGIAAVFDMAPGMTVYEIPSNCTSQTATSGALRIVCTFTSLPALGTQAFQLKMATSGMAKSVVGVHGAVGLASQAPTLNESVQTLDPATHAFFQGDSNISNNKLSDNTTLTDSADLELVKTSNPAAPGSVIGGGEVTYTLTVTNKGPGPASNFNVRDSLPSGFTVVAGSFQGAGAGWAWNAATTTATHATGLAANASTTFSFKAKADISAGDVTNHALVTSVGTIDTQPNNNPAQADTRVRAGADLGVDIAWSKSPATTDQPLDLKITVTNKGPETVNDAVIKGSLPAGMPWNGVDVSQAPSWACVPDVAGADPVLFTCTRQPGFSKSASGEVITINSTAPATPGDYTASATVDSALLEDPVTTNDSDSATVSVLADGADLELGKSKVNLQSLTDPELAPNKVPAGNTVASDMLSTLTLRNNGPADVIGNAEIQELLAEGEEFKSVRNGSFDCTAVPAAWSSGVRQLVTCRLKAAAYPFTLGQTQSLELITRARELPTGGAGALLVNNACTGGTMPNGYVGSAIANEPTTSTGVNADKVTANDCASGNGVAVTQGIANLKVSKETRAPTAGDRVLKVTDTEMSYIITVTNTGDATAGVVVNDKIPGWSNFTKASVTNTAGWACTAAETVICRSNATMMASGAVNTITIKLTHTDDVSPGFLVDSVGKTAACPNVPPAATNQPHFHCNTVGVGIDGTQPNSLGEGDWTDNYASDWVSAERYANMQTQSKTITTGRDDGQAGVNSVYRVEYRNDGPSAVPGVVMRDTFQLLAGDAGFVLIDAKTAGNVSCAVVSKDAGIVETQGQGGMSYSNSNAALEQTLTVACPATNFAAGSAQTLNITIRPNVNTGNTGRHFDNTGNFTIATGTGADYHGSDANGDFIYNSNTDVRDDTKDAQLTFKQGEADLAVQKKDVFDTFKDPIGYDGTQPAKNVLTYMLEVTNGGPSIATNVIANDWLTPPEGKTVSFVGASATSSTSDAAYGSTLCAVQGPATVTGNAAKTAKLHVICTLPGAGYGGNNASGVISSTTGQNKSYVYLRYRYETEPGASGDTVNNQVVVSSSERDPQAGNNDVTETTTLYMTADMGVVKTMVATAPSLDPSVALPPSVDVVSIKQDFWYVLTATNHGSGQSLARDRAKANGGGGTVIVDTLPAGVVVTDPAQIRWQKTGPAFTGASQNGTGLCTLASRTITCEVGDVTFASGNLGTVRIIVPSRWDALPPGSTAPLGTSNNTAKVTTEQIDPNPVNDTTTVPLNVVNLSIAGVVFVDSNGGTSDGIKQGAETGINGVTITLSGKDFNGTAVSRTLTTAGGGAYRFDNLPPSDAAGYTVTQSHVAGYSNGLVAPPTTGNDSATFNPGSYLAAVDSTYVAVVTPGVVANLGTIGTKGATAINYNFPKVQAVTLSGYVYADIGLNNVRDAGTDPAISPATVELLDASGNQIASKTTDANGYYEFTELHPGLTYSLREPLPAGYQDLPTAINPGRIGGVPCTICTTQTVATNTSRIDNIKLVAGSGTEFNFGEAQVASVAGVVYVDREDPTGTGLYDGNGTYNSGVDRGLGGVQIDLYDATGTTLLSTTTTDATSGAYGFVDFNVASGKVVAGAMYQISQTQPIALRSGKEATSNVINTIPVPVLGLRAQNFGEIAGNISGRIYLDATNNGVYNPTDADLDGVSVSLGANTLNVFGEVVAAQQTVAGKYVFRDLPSGTYAVTEQTQPLYNTAPTLNGATNAGSVSAGGTAGLATSKSVVPSAITGIAIAAGGSSPDNNFGEILPVSVAGTVFMDVNNDGVMSGAAEVGLDGVLIQLTGVDDLGPVSTTMVVPVNTANGGTFLFEGLRPGTYVLTEPNQPTGTANGITTAGTVSNIASGTATPVTTLPSAISAINLTEPGSASIDNLFGETPRDSSISGKVWLDTNDDGIVGSSENGLGGVTVTLEGTATDGTKISETITTNPDGSYAFTGLPPGQYTITEPTQPANTVDGKTVPGSTGGTAGKQGDPASVISTITLGVTTHSVDNNFAELPSGSISGRVFNDSNDNGVIEPDEVGYANVDVVLTGTDDMGVAVNMTLKTDKNGAYSFEGLRPGTYAVTEPTQPPATLNGFTTAGSIGGQRVGMATDKATVPSKISAITLAIGAKSIDNNFGEIGDSPDMLVSKSSTTVKFTVNNVATYTIRVRNGGQKPSFGEYIIKDRLPVGLSLAEIPAGNGWTCSGAVGDARFECRSSEVVNAGATSLSDITVKANVAAEAAQAGTVNNAVLIEGGGENEFRTPTTTERNTFEGDVSTLPVCDTAITQNVCRVPNQVQLSASVGGTVWFDIGSEDTLLDGGDERLHSWIVELVDAASGVVSKNTTTAADGSYRFGDVVPGQKWNIQFRDPVSGVLWAWPVNKETAGGMGVACDADKAISGSSASACRISENGSSQLQVVLEAGVHMPQQSLPVDPSGVVYDATTRDPVPGSIVTLSPVGVCNGYDPKTAVLNAMAGGYRIEGNAISMTVGSSGYYQFMFGPAAPARCEFRLTVTPPGGYQFVSSMIPPQDGSLSPAGAAGSSHLVQPQANAPTGAVGTPTQYWLSLFSGSATAGIVHNHIPLDTAEATGLVITKTGDRQTAEIGDTVQYTITVRQTAGSALATVNIVDTLPRGFTYIDGTGRVGGRAVDNPLGKPGPRLGFNLGPIDVGGQLVLTYRVRVGVGAQQGDGINRAQAHGCSITGGCIDPVGMTPVPGSIPSNRAEYRVRVTGGVFTEEACVLGKIFVDCNNNHVQDREELGIPGVRMYFSNGTWMISDSEGKYSYCGLTPQSHTLKVDPSTLPVGARLTTSSNRNLGDADSLFLDLKNGELHRADFVEGSCSNPLLEQVKARRTQGEVRAPETETGQSQLRFDSKPVRAPQQATDSSKQGPIVQPRPNPPSAAAQQEVQP
>NZ_CP014274.1|WP_062170685.1|4048374_4049115_-|response-regulator-transcription-factor
MASDLNFAPVGAANPMALAPLRIWIVGNLELLQPLLPYGAQIQALDSVEALYRELVIIPCDIVVIDTTRVRTGMVETVEHLRRRDDLGVVLLVDPLTPQLIADGLWAGADACLPHRPDPEFLAAKLYSLRRRLPGEAAQLMENAGPGGDAAPCWSLESDGWDLRGPNGQVLALTEAERAFLSLLFSSPAETVARERLIAALTDQPWSFDPHRIEVLVHRLRNRVQAATGCTLPVRAVRGAGYRLTA
>NZ_CP014274.1|WP_062170687.1|4049261_4051409_-|S46-family-peptidase
MTRKPLTAALALGMSLAAVAAHANEGMWMPTQLPELAKTLKEAGFKGDPTQLADVTAPPLSAVVRVGGGTGAFVSDDGLLLTNHHVAYGVIQYNASKEHNFIDDGFIAQGRDDERAANPDYRVLVTGGFDKVTDEVLKDARGKTGRGYYDAVESARKRIVADCEAEGGVRCSVANMYYGSDFYRIRQLELTDIRLVYAPPRAIGNYGDEVDNFMWPRHTGDFTLLRAYVGKDGKPAPYSKDNVPYHPPAHLKMSLDGPKEGDYAMLAGYPGTTYRLRTAGEFANQIDSVLPRRVEVFQQLIDVIEAQGKTSADARTRYASQLQSLKNNRKRAAGELEGLLRSDAKSQRAQDEQAMLASADGKYKADIDALFASLAEERAVGSSEFLVTLMSSQTQLLRSALLLERLRVESLKPDAEREAGYQQRDQALIEGVLKQVQRRYDPTVEKALLTALLTRYQQLPDAQRDAHYDNLFGRTPAELAKHLDELYAQTKLGDEAQRLSRFEAARKGGFIEADPLVSVAAALVMAQLNAERDSKEREGEQLRLRPSYMQALFAWRASQGRAVYPDANSTLRISYGKVEALHPRDAVSYAPVTTVAGIVEKNTNTVPFDAPKPLLAAIAKGDFGSTADPALKTQTVNFLTNLDTTGGNSGSPVLNAKGELIGLNFDSNWESVSASWWFDPRYKRAVHVDMRYLRWLLAKVYPAPALLQEMGVPAE
>NZ_CP014274.1|WP_062171937.1|4051680_4055493_-|translocation/assembly-module-TamB
MAELRAKRKARLRTLAIRSGITITALVLLGLFALYWLLQTVAGREVLLAQVVARLPAGSSLTWSKAEGPLAGPLILHDLDFRYNDLHFTAAQAYLDPDIRPLLGRKLRLDALRISDATLELGPSEDKPFELPRWPDVLPAIELPLALQADTIVIDGLRITQLQQPIIDITRVRGGLEAASGEFTASQLKVNSNLGDFRIDGHYLPREDYATDLTVRALMPPRPGQPAARLGLVARGDLAHMEVAIAGYAPKPLHISLVLDGRTDPIWNVAARSEQLDIGQVVPAQFLADAPAPLALDFTARGRGGQAKLQGRVRQGENELVLAPSNVAIENQVLTVAPLVAEAFGGTVRLQGTADFSDAQNPGFHFAVVANQLTYTPEPDPSSPDSTPVPLHLKEARLGVAGNLKNWAAVGKADVSREAQDANLDFDVRGNDQQARIERLKATTPGGAMELKGSAAWAPELAWDVEARLAKFDPGYFAPGWEGNLSGTLASKGKQLPAVAGSTHMSFEATLDVPQINGMLRGRRVDARAKLALQGNQGEGNVRLVMGDSQIEAKGKVGDRLDVDARLTPLHLSDLLPGGTGSLAGTVQLRGTPSQPDISADLRGNGLQWDDWKAQQISITGRLPWRGDSGALQVHGSAVQVGMLLDQVNINARGSVQNLQLDADTRNELGAVALSGSVRQQGQAWRGELASLRIAPVKGAPWQLLQPAAFNVQGNNFSLSEACLGADTGGALCVAANWPRDGLQLRGDALPLALVQPWLPPNEGRRMYLRGDLTLDGNIRPRGNAWEGAFKVASAEGGIRLGDNARGELVRYDNFSLNVDMLPNSIKGYLGVGFKGDGFIDAKVQTGWEPNAALTGELYMNIARLYWLELFSPDLVRPQGLIEGHVSLRGTRSQPTLGGEAKLSDFTGELPALGLTLSEGKGTFTAQPDGSARISASAKTGGEGTLQVDGGLSWFGDAQPLQLHIHGDKVLLANTSELRVVANPDLNFTLAGTAMELRGSVHVPEADLDLERLDRGTSSSEDIVVLDPVDPEEGPSSPLDMDLTVSLGDKVKMSGFGLKGALTGRMQVRARPGREMTANGGLEVSGRYKAYGQDLTITDGQLLWNYGVVSDPRINIKAERAIGDVTAGITVTGRAQQPRVDVWSDPAMSQSESLAYLVLGRSLSMASSDQAQQVNAASAALSAGSGLLAAQVGAKLGLDDAGVSQSRALGGSVIGVGKYITPKLYIGYGVSLVGSGSVLTLKYLLRRGFDIEVESSTVENRGSVNWRKER
>NZ_CP014274.1|WP_062170692.1|4055537_4057337_-|outer-membrane-protein-assembly-factor
MLTRMQLSRITPLLLFLALLAAAPLAHARGTIEKVQIKGLDKGDDAEMIENIEVSLSVYDAIGKVQGESRLEYLLSQAERQTRTALEPFGFYNPKITVEAPRTGDTLQVLIQVDKGEQIKVRTEELAITGPASRDQYLQEDIEAFQPKTGEVFDSVNYEASKIKITRRLAERGYFDADFTQRKVEVTRAENAADIFLTWDSGRRYNMGPISFEQDYFRPDLFEPLVYWEQGSYWHEGKLDRLRESLTKLDYFSVIDIQPHPEQADESGEVPVNVKLTRAKRTIYTAGLSYGSESGPGVRGGVERRYVNRRGHKLTTQLDYAQKRKSFITSYRVPGFRWLDGWYTYAVSAYDEQTDYIDLRNIKLIASRSGEINEHWTAIVSMNALRERWRYSSGDAFNAAVYNYSTLVYPQLTADYVDVDDKSFPRRGLSGNATMRGGIEGAGSDTSFIQADATLRWYIPVGDADRLILRGQAGTTWTSDLVSMPPSLRYFAGGDRSIRGYAYREVGPRTPAPDKFALGAKNLVVGSAEYEHYFGGGPWGGAVFVDTGSAFDNTIDLHTGVGFGVRWKSPVGPVRIDIAHGLNSPDSQFQLYLNIGADL
>NZ_CP014274.1|WP_062171939.1|4057916_4060691_+|TonB-dependent-receptor
MKRQLLSTAVCTALAAYTSFAFAQTQDEASKRNVETLDKITVTGSLIPQVQIETATPVTSITAQDIQKQGFKDVYEVLRSQPLATGAVQDSQFSGGFTSAAKPISLLGLDPGFTLVLIDGRPMADYPLLYNGQSNFVDLASIPTSMVERIDIAPGNQSSVYGSSAIAGVVNIILKKRLDGTEMSFRIGGYDGGGGGNQRFQLTSGHSWDKLDLTAGLQLSNQDPIYGFNRKHFDSTNDNPDTAARYGSRTFVHNASNGAYIDPGAAACAPLAGLFGGTTIYDTRPGRGNYCGSRYEPGYSTILNKERSAAGYANLNYALNDSTDIYATLLMNRTKNESNSGSRFWQPSLDTSGYIFNGLTGDLESYQRIFSPEETGDLNFNNERQTADSYNIAIGIKGPVGQSSWDYNAYYARSEYQIDSRQWWPLKDKMEDFFREHFLGPQLGEYYGYPIYEPNDAGFYQALTPEQYRSFQGEIRTKSKTWTQNVNLQFTNTSLFTLPAGDVGFAGVLQAGQQSWTNPTDSRVVSDQFWGLSGTQGKGKRDNWAAAVELRVPIFSKLTASLSGRYDDYKNDGGGSDSRATYKAALEFRPIDALLFRANYATAFKSPDMAYVFAGDSGFYTFVPDYYRCATEQPGVPISQCTLNDEQVRGSRSGNGDLKSITAKSWGGGVVWSPNSSFTVSADYYRIKIDNKVADLDLDLLLRNESACRQGQLDASSPTCVDALQRIGRAGPNAPQPNQINTVAVNPINVAKEDVSGVTANLDYRWATDSWGSFMLGARYNVTLKHESQQYPEDPVIDLLRDPYYSSEFKNIFSGTLGWQMGDWTTTLYGIRYGRTPNFAAQDTTQGYAADDAGKVKAWTTFNLTVDYAVTDDVSLSVTANNLTGERPPRDRTYTSYPYYNIFNYNGYGRSYMLEMNWRFGRSQ

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Crispr_ID: NZ_CP014274_22

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_22

4083418-4083524

Orphan

Consensus_repeat	Method
TGCACTTGGCAGCTGTTCCGATGCCTGCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014274_22

>merge|NZ_CP014274|22|4083418-4083524|CRISPRCasFinder
TGCACTTGGCAGCTGTTCCGATGCCTGCAGCACCCGGTGTTCTCCCTTCCTTTGCCTCAGGCAAGGGGGCGGAACATGCACTTGGCAGCTGTTCCAATGCCTGCAGC

>NZ_CP014274|22|21|4083418-4083524|CRISPRCasFinder
TGCACTTGGCAGCTGTTCCGATGCCTGCAGC	ACCCGGTGTTCTCCCTTCCTTTGCCTCAGGCAAGGGGGCGGAACA
TGCACTTGGCAGCTGTTCCAATGCCTGCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062170735.1\|4093296_4093962_+\|YceH-family-protein	unknown	unknown	gnl\|CDD\|377312
NZ_CP014274.1\|WP_062170725.1\|4087565_4090196_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsB	unknown	unknown	gnl\|CDD\|235325
NZ_CP014274.1\|WP_062170714.1\|4077502_4078411_-\|ligand-binding-protein-SH3	unknown	unknown	gnl\|CDD\|211400
NZ_CP014274.1\|WP_062170704.1\|4069808_4070813_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|226229
NZ_CP014274.1\|WP_062171942.1\|4070803_4071367_-\|chemotaxis-protein-CheB	unknown	unknown	gnl\|CDD\|319752
NZ_CP014274.1\|WP_062170732.1\|4092203_4093106_-\|acid-phosphatase	unknown	unknown	gnl\|CDD\|319836
NZ_CP014274.1\|WP_062170723.1\|4085785_4086715_-\|tRNA-2-thiocytidine(32)-synthetase-TtcA	unknown	unknown	gnl\|CDD\|236737
NZ_CP014274.1\|WP_062170730.1\|4091487_4092207_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NZ_CP014274.1\|WP_062170722.1\|4084735_4085644_-\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|234726
NZ_CP014274.1\|WP_062170710.1\|4075932_4076679_-\|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl\|CDD\|182840
NZ_CP014274.1\|WP_156456005.1\|4081596_4083171_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP014274.1\|WP_062170716.1\|4078643_4079606_+\|ferrochelatase	unknown	unknown	gnl\|CDD\|234585
NZ_CP014274.1\|WP_062170708.1\|4072232_4075835_-\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NZ_CP014274.1\|WP_062170721.1\|4083890_4084682_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|307807
NZ_CP014274.1\|WP_062170706.1\|4071381_4072248_-\|chemotaxis-protein-CheR	unknown	unknown	gnl\|CDD\|224271
NZ_CP014274.1\|WP_156455903.1\|4086790_4086985_+\|DUF465-domain-containing-protein	unknown	unknown	gnl\|CDD\|377305
NZ_CP014274.1\|WP_062170718.1\|4079602_4080466_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP014274.1\|WP_062170712.1\|4077200_4077428_-\|Sec-independent-protein-translocase-subunit-TatA	unknown	unknown	gnl\|CDD\|179864
NZ_CP014274.1\|WP_062170740.1\|4094849_4096835_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|130146
NZ_CP014274.1\|WP_062170737.1\|4094087_4094609_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062170735.1\|4093296_4093962_+\|YceH-family-protein	gnl\|CDD\|377312	pfam04337, DUF480, Protein of unknown function, DUF480. This family consists of several proteins of uncharacterized function.	6.37364e-68
NZ_CP014274.1\|WP_062170725.1\|4087565_4090196_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsB	gnl\|CDD\|235325	PRK04974, PRK04974, glycerol-3-phosphate 1-O-acyltransferase PlsB.	0
NZ_CP014274.1\|WP_062170714.1\|4077502_4078411_-\|ligand-binding-protein-SH3	gnl\|CDD\|211400	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module. The SYLF domain is named after SH3YL1, Ysc84p/Lsb4p, Lsb3p, and plant FYVE, which are proteins that contain it. It is also called DUF500 and is highly conserved from bacteria to mammals. Some members, such as SH3YL1, Ysc84p, and Lsb3p, which represent the best characterized members of the family, also contain an SH3 domain, while family members from plants and stramenopiles also contain a FYVE zinc finger domain. Other members only contain a stand-alone SYLF domain. The SYLF domain of SH3YL1 binds phosphoinositides with high affinity, while the N-terminal SYLF domains of both Ysc84p and Lsb3p have been shown to bind and bundle actin filaments, as well as bind liposomes with high affinity.	1.44149e-78
NZ_CP014274.1\|WP_062170704.1\|4069808_4070813_-\|diguanylate-cyclase	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	1.08366e-60
NZ_CP014274.1\|WP_062171942.1\|4070803_4071367_-\|chemotaxis-protein-CheB	gnl\|CDD\|319752	cd16433, CheB, Chemotaxis response regulator protein-glutamate methylesterase, CheB. This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain, a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. cheR and cheB have a strong preference to occur in the same operon, and a subgroup contains multidomain proteins with CheB-CheR fusions. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.	2.25662e-85
NZ_CP014274.1\|WP_062170732.1\|4092203_4093106_-\|acid-phosphatase	gnl\|CDD\|319836	cd07534, HAD_CAP, molecular class C acid phosphatases, similar to Haemophilus influenzae e (P4) acid phosphatase; belongs to the haloacid dehalogenase-like hydrolase superfamily. Molecular class C acid phosphatases (CAPs) are nonspecific acid phosphatases with generally broad substrate specificity and optimum activity at neutral to acidic pH. Members include Haemophilus influenzae lipoprotein e (P4), Elizabethkingia meningosepticum OlpA, Helicobacter pylori HppA, Enterobacter sp. 4 acid phosphatase PhoI, and Streptococcus pyogenes M1 GAS LppC. Lipoprotein e (P4) exhibits phosphomonoesterase activity with aryl phosphate substrates including nicotinamide mononucleotide (NMN), tyrosine phosphate, phenyl phosphate, p-nitrophenyl phosphate, and 4-methylumbelliferyl phosphate. The role of P4 in NAD+ uptake appears to be the dephosphorylation of NMN to nicotinamide riboside, which is then taken up by the organism. Elizabethkingia meningosepticum OlpA is a broad-spectrum nucleotidase with preference for 5'-nucleotides, it efficiently hydrolyzes nucleotide monophosphates, with a strong preference for 5'-nucleotides and for 3'-AMP; OlpA can also hydrolyze sugar phosphates and beta-glycerol phosphate, although with a lower efficiency. Helicobacter pylori HppA is also a 5' nucleotidase. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.2861e-77
NZ_CP014274.1\|WP_062170723.1\|4085785_4086715_-\|tRNA-2-thiocytidine(32)-synthetase-TtcA	gnl\|CDD\|236737	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional.	0
NZ_CP014274.1\|WP_062170730.1\|4091487_4092207_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	3.68179e-105
NZ_CP014274.1\|WP_062170722.1\|4084735_4085644_-\|recombination-associated-protein-RdgC	gnl\|CDD\|234726	PRK00321, rdgC, recombination associated protein; Reviewed.	1.47336e-134
NZ_CP014274.1\|WP_062170710.1\|4075932_4076679_-\|twin-arginine-translocase-subunit-TatC	gnl\|CDD\|182840	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC.	5.50859e-82
NZ_CP014274.1\|WP_156456005.1\|4081596_4083171_+\|PAS-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	2.34381e-96
NZ_CP014274.1\|WP_062170716.1\|4078643_4079606_+\|ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	1.21699e-134
NZ_CP014274.1\|WP_062170708.1\|4072232_4075835_-\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.02074e-64
NZ_CP014274.1\|WP_062170721.1\|4083890_4084682_-\|M48-family-metallopeptidase	gnl\|CDD\|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	7.33227e-53
NZ_CP014274.1\|WP_062170706.1\|4071381_4072248_-\|chemotaxis-protein-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	9.84806e-52
NZ_CP014274.1\|WP_156455903.1\|4086790_4086985_+\|DUF465-domain-containing-protein	gnl\|CDD\|377305	pfam04325, DUF465, Protein of unknown function (DUF465). Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C terminal of the motor domain (Myosin pfam00063, Kinesin pfam00225). Members of this family may form coiled coil structures.	1.44623e-08
NZ_CP014274.1\|WP_062170718.1\|4079602_4080466_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.51622e-19
NZ_CP014274.1\|WP_062170712.1\|4077200_4077428_-\|Sec-independent-protein-translocase-subunit-TatA	gnl\|CDD\|179864	PRK04561, tatA, twin arginine translocase protein A; Provisional.	8.92648e-41
NZ_CP014274.1\|WP_062170740.1\|4094849_4096835_-\|AAA-family-ATPase	gnl\|CDD\|130146	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP014274.1\|WP_062170737.1\|4094087_4094609_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	7.55262e-30

>NZ_CP014274.1|WP_156456005.1|4081596_4083171_+|PAS-domain-containing-protein
MVDAIASGDHHTDVGGARFAPGTLAEGVLRMRNQLGERHRQEDALNRENTQIRASLDASRTGMMIADNEHIIRYVNRSVVALLRNQQDTLRKAFPDFNVDTLIGSSIHRFHANPARIRGMLDQLKKVHNGQITIGPVHFSQVVTPVFNADGSRSGFAVEWHDRTQELQLENSVANIVAAASAGALDQRLQSVSEAGFIQTLTTGINQLLEVVATTTGELRAMLSALAAGDLDHRVQGDYAGDFEAMKVDANLTAERLTGIVGQIKQCSLAINSAARELAAGNDDLSQRTEQQAANLEETAASMEELTSTVRENAASARHANQLAVGAADVAVRGGDVVGQVVSTMRAIELSSKRIAEIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAREIKELIVDSMGKVDDGAALVAQAGSTMSEIVGSVQQVSDIVARIAAASQEQSVGIEQVNHTVVQMDETTQQNAALVEEASAAARSMEQQADALAEAVSVFRYSAEGGAEGVRRVG
>NZ_CP014274.1|WP_062170718.1|4079602_4080466_+|alpha/beta-hydrolase
MKATPFELQLDGVRIAGLRAGNPAGLKVLALHGWLDNAASFLPLAAQLPTLDLVMVDLPGHGYSDHLPLTTPYTTPQAIVQTLAIADALGWDRFVLLGHSMGAAIASLVAAVAADRVQALVSIEALGGLTAPAGETVQRLRTYVDAMLKLDAKQLRVFPDLSAPVRARMMVNQLSEGSARLLVERGVKPVDGGWSWRSDPRLMLPTAIRMTEEQVCDVVSAILCPAQVIYATPAQAYFPEPERSQRAALLRDGRLHTLPGHHHVHMDQAEAVAAMIRDFIAELPDAT
>NZ_CP014274.1|WP_062170716.1|4078643_4079606_+|ferrochelatase
MSDAPTTALLAVNLGTPETPTAPAVRRYLAEFLSDPRVVSIPAILWKPLLYGLILPLRSGRSAQKYAQVWLPEGSPLAVYSRRLAQAMQQQLPHWRVREAMRYGEPALLKALDALAAEGMQRIVVLPLYPQYSTTTTASIEDRVQQWQARNPKVLVQTIRDYAEDPRWVAAVAASIADYWAQHGRGGKLVFSFHGIPQRVADAGDPYPQRCAASAQAIATALGLASSEWELTYQSRFGRERWLQPYAEPRLWELAESGIQTLDVVCPGFATDCLETLEEVQIGFTETLAARGARMRYIPCLNDSTAHAAALAALASAQPA
>NZ_CP014274.1|WP_062170714.1|4077502_4078411_-|ligand-binding-protein-SH3
MRRLPCLVLLLSASLLSTTAVAGPQEDQRARNAVRVLNEIQDIPEQAIPDKLLDEGRAIIVIPDTIKAGLVLGGRRGHGLMSVKTADGSWSNPVFIKLTGGSIGFQAGVQSSDVILVFRNDRSLDNIVNGKFTLGADAGVAAGPVGRSAAAATDGQLKAEIWSWSRARGLFAGVALDGAALQIDDAANLDAYGQNTTPRMILEGRLTTAPSSDVVAFRDRLEESTYAAREKRGTQGSAAPVAASAARSDAVSVQAPAAATAVGSDTATTAPLQHVPAEPAPQQGFQPVSEGEIRTESLDGGN
>NZ_CP014274.1|WP_062170712.1|4077200_4077428_-|Sec-independent-protein-translocase-subunit-TatA
MGSFSIWHWLVVLVIVLLVFGTKRLTSGAKDLGSAVKEFKKGMRDEDKPAAQLSDESRDADKSAEKQAEHERDAR
>NZ_CP014274.1|WP_062170710.1|4075932_4076679_-|twin-arginine-translocase-subunit-TatC
MSADFNESSLIEHLIELRSRVMRGLLGLGVVLLALMPFSRTLYTHLATPLISQLPAGQSMIATNPAGAFFAPLKLTFFAALFVAVPWLLYQAWAFVAPGLYAREKRLAVPLLGSAVALFYIGCAFAYFLVLPAVFHFLTTFRPEVIAITPDANAYLDFVLAIFFAFGASFELPVAMVILVLLGWVTPQQLREGRGYAVVGIFVLAAVLTPPDVVSQLMLAIPMCFLYELGIHAARWLQPRDQGKTAAP
>NZ_CP014274.1|WP_062170708.1|4072232_4075835_-|response-regulator
MTQQKESWINNVPLLTKMLAAFGLVFLCFLAASVVSYRTSGQDDDARRREGVQIEVIRQVEDAIQSVRMQQIAIRNYLLGDGERHLQTMNQQAQRRDAALAAALVAAGTGPMAERLRRAQLQARDWDSSVASVLRPAITAQPLAAVDQLHALSNGGQGNGLAEALDEIYDAEVTQLLSDRGQMSDWIARAHRISLVLLVMGFLIIIGTLWMISRLVVKPINRLTDKMTRLSNDDLDVEIDNLQRKDEVGEMARAMDVFRRNSLAARDANWVKFGVGEVGAELQTAQTPDEYAQALVSQIAPRIDAPIGVFFAWDEKQQKLQLQGSYGFQRRKHLGLQYGLGDGLIGQAALERKRISVQQVPDEFFGVHSALGEAQPRHLLAVPLLLKGRLLGVFEFGTFGHFSATQEAFIDSVLPTVALGLDNIRRAEETQQLLDHTRAQAEELQRSQVALQTQEEELRATNEELQGKTVELEEQAQRLSASEEELRVQAEELQASNEELRQKTEVLNEQKDVLQVLQRETEFKAQELARASQYKTDFLANMSHELRTPLNSLLILSKELAENESGHLDVEEVEAAAVIHDSGSNLLRLINDILDLSKIEAGKMDVHREEVKVDAITREVTRHFRHMAMENRLEFSIDVDASMPEALVTDRSKLQQVLNNLLGNAFKFTREGSVTLRLAMADAAMLTRIGAASDELHVALTVRDTGIGIPEERLESIFEAFEQVDSSTSRHYGGSGLGLAIARRLAQLLGGQLVVDSEQDKGSSFSLVLPLLSAGLTNAMAASQAAGEYRPAPTPGPARVATAQLIDWIPDDRHAIAAGETVILTVEDDPAFARILVDLIRRKGHRALAAADGESGLELARRYRPTGILLDVMLPGMDGWSVLQHLKHDPVTAAIPVHFISAVDEAAKGVALGAVGYLTKPVDRKALVAAFDHLLDVAGKIVRKLLLVDDDPDSRLALTRLLQADNVDIDQVASGEEALERIATHSYDCIVLDLNLGGISGIEFLEKAATLVAVPPVVIYSGQDLSREDSLKLRQYTDSIVIKGQRSPERLLDEVSLFLHSIGSRGANATPSDDNNLGGRQVLLVDDDMRNLFALSKSLRARGMNVSMAQDGYKALQQLQENPSIELVLMDIMMPGMDGYETTREIRKLPEWNNLPIIAVTAKAMHGDRDKCLDAGANDYLTKPVDLDKLLSMMRVWLQK
>NZ_CP014274.1|WP_062170706.1|4071381_4072248_-|chemotaxis-protein-CheR
MAAKVAPTTAPTSRDEVDDIEVDAFIHAMSRRHGYDFSGYAPSSLKRRVLQLVQTLDVAHVGELTARVLRDDEMVPQVIAKLSVPVSEMFRNPAVFRKLRDEVFPVLASYPQINIWQAGCAHGQEVYSLAILLKEAGLYDRCQIYATDFSDEALAKAQEGIFPIRDARLYSENYLAAGGRHTLSDYYHARYDFMKLDARLKERVTFANHNLVCDGVFCEAQLILCRNVLIYFSDALQDRVLGLFRNSLSRGGFLCLGNRESIRFAPSARDFAPIDAELRLYRNTAGLL
>NZ_CP014274.1|WP_062171942.1|4070803_4071367_-|chemotaxis-protein-CheB
MPPQAIVVGCSAGGLAALHQLLGGLSGPLPVPMVLVCHSGSEDMRVFCELLASRSGLAVSEAEERQQPEPHHIYVAPSGYHLLLERTGRFALSVDPRVAFSRPSIDVLFESAAEVWGEHLIAVLLTGANSDGAEGCARVRRGGGTVIVQDPHTAQVPVMPRAALQLGGADHCLPLPDISLLLEALCS
>NZ_CP014274.1|WP_062170704.1|4069808_4070813_-|diguanylate-cyclase
MFVAKPSPPPRPKILAVDDNPANLLVIRRVLAKLDVEVVEAASGNDALKATLDDEFALVLLDVYMPDINGFEVAEILSQEESTRQTPIIFVTATYADDVHRLKGYGFGAVDYMAKPLEATILLSKVQVFLELYRHRVALRDALSELSARNRQLEIEVEQRKQMEQEMRHLAMHDMLTGLPNRALFMDRLESAHHRAQRHGGMFALVYVDVDRFKEVNDTWGHAAGDAVLIELSARLRGALRENDTVARLGGDEFALVLEELDDINDAHRLMERVTQSLQAPMHYMRDGENLTLAIAASIGVAAYPADGAEVDALLHAADQAMYMIKRSREEARS
>NZ_CP014274.1|WP_062170721.1|4083890_4084682_-|M48-family-metallopeptidase
MASLLRRLMTPAAPVIQRDTVRLRLDDAEIDVLRVRDPRARRLKLSVDERGARLTMPLRASLVSGERFLQANRQWLQQQLARLGGDGLLAPALQLREPGVLPLRGELLPVQWQEGRFTRIEVDAGGVNIQLPARAGEPALRRALREFYEVQVRADVGQWLPRYLPGLSRAPSRLRPKVMSSQWGSLAPDGSMALDLALVLARPSAFEYVLVHELCHLLQANHSPAFWAEVEARFPAWRDERDYLREEGRRLKSTLHQLLRAQG
>NZ_CP014274.1|WP_062170722.1|4084735_4085644_-|recombination-associated-protein-RdgC
MFFKNLTLFRFPTSIDFSDVDTLLPQVVLKPVGALEMTSRGFISPFGREEKTQFSHRIGDALWLTVGGEDKILPSVVVNDLLARKLEEIEEKEGRKPGGRERKRLKDDLLHELLPRAFVKSSRTDAFLDLQHGYVAVDSSSRKTGENVMSDIRGMLGSFPAMPLNAEVAPRAILTAWIAGEPLPEGLSLGEECEMKDPAEGGAVVKCQHQELRCDEIDKHLDAGKQVTKLALIFEDNLSFVLGDDLIVRKLKFLDGALDQLEHIDEEGRRAELDARFALQSGEIRRLFLLLEQAFKLSKADS
>NZ_CP014274.1|WP_062170723.1|4085785_4086715_-|tRNA-2-thiocytidine(32)-synthetase-TtcA
MSAVISLPDPAPRARDPHAAEREHQKLGKRLRHQVGQAIADFGMIEAGDKVMVCLSGGKDSYTLLDVLLQLQKKAPVPFELVAVNLDQKQPGFPEHVLPEYLASIGVPYHIIEQDTYSVVSRVIPEGKTMCSLCSRMRRGSLYTYAEANGFTKIALGHHRDDMVATFFMNLFHHSKISGMPPKLRSDDGKHVVIRPLAYVREADIIEYADARQFPIIPCNLCGSQENLQRKQIGLMMKQWEKDTPGRIEQISRALGDIRPSQLADPKLFDFLSLGRRENAPQSDAQAWLDGSDKQQDQQALLPSGEGLG
>NZ_CP014274.1|WP_156455903.1|4086790_4086985_+|DUF465-domain-containing-protein
MTPEQISQRIAVLRAEHRSLDENIARLAANPDDDLEAKRLKKRKLQLRDCITRLECMLIPDEPA
>NZ_CP014274.1|WP_062170725.1|4087565_4090196_-|glycerol-3-phosphate-1-O-acyltransferase-PlsB
MAPMSKQKSQPDQGELLPPDAANATPATPAAIVPGASARPVPVARAARRPLWARLLGKLIEPWLGLKIEPDQAGQHNDGRPVVYVLEDYGLSNALILDKACRDAGLPSPLVPLAGDPTGRKRAYVALSRRSSNNMLLPEQRGAKTHSDSLAKLLQAHRANPGLDVHLVPVSIFVGRAPDKQSGWFAVLFSENWALVGRFRRLLAILLNGRDTIVRFAPPVSLRETVDEGLEPERTVRKLQRVLRTHFRRIRESIIGPDLSTRRLLVDKVLESDPVREAIATQAKRDNSKTTDAWKKAQGYAWEIAADYSTPVVRSASFMLSHVWNRIYAGVLVHHLDKFKEAAPGHEIIYVPSHRSHMDYLLLSYLLYDRGIVPPHIVAGINLNLPVVGTLLRKGGAFFIRRSIKGNALYSAVLSEYVAQLVAGGYSIEYFVEGGRSRTGRLLQPKGGMISMTLRAFLRQPRRPVLFQPIYVGYEKLMEGNSYLDELTGRPKEKESIWALLWGIPKVLKQNYGQVVVNFGEPIALNDVLAKMAPEWDGQPVPEDEKPSWLAGTVDVLAEQIQERINAAADVNPINLLALALLSTPKHAMGEADLIAQIELCKKLLVEMPYSDRVTVTPHSPERIIAHAEEINVLSRIKHPLGDVLSVSGDTAVLLSYFRNNVLHLFTASSWVACCFQNNRRMSRGGLLRLGRGLYPFLQAELFLPWTEDEFAARIDQTIDVFVREGLLQHVGEDDGGMLARSTGQTDEVFRLRAIGHSLQQAFERYYIAISVLVKNGPGTLGAGELESLCQQAAQRLSLLYAPAAPEFFDKTLFRGFIQKMRELRLVWPDQNSKLLFDERLDAWAKDAKFILGRELRHTIERVSPEAVKAEVPPVV
>NZ_CP014274.1|WP_062170730.1|4091487_4092207_-|orotidine-5'-phosphate-decarboxylase
MSRAPLPLRADERLIFALDVPGKAEAIEWVDKLGNAVSFYKIGMELLASGEYFDVLEELAKRDKRVFVDLKFFDIPATIAGVIRRLSQWPVSYCTIHGWHPGMMEAAAAANTSDMRLLAVTVLTSMGRPDLAQMGIDREPVDVVVERALAAQRAGIDGVIASGQEAAPIRAATGQGFSIVCPGIRPGGPVDDDQQRTVGVAQAFADGADAIVVGRPIRLAADPRAAALAMQCEILDSIK
>NZ_CP014274.1|WP_062170732.1|4092203_4093106_-|acid-phosphatase
MSRFPAFTLLAGAVLSLAACSSTAPLSRVSPAPADALVAPANAPNDNLNAVLWVQRSQEYRASALQTWKLAAAQLDAALADGRWTALLPEEGGSHQAATLKPAVVVDVDETVLDNSPYQARLVHDGASYNDATWEAWVDERKAQPVPGAVQFAQAAAAKGVTMIYISNRTAAMKDATIANLRQVGFPVADDSVYLGLGTPVPGCTEHGSEKGCRRQLVAQQYRVLMQVGDQFTDFLQVEDNSLAARDLLLDKYQGWIGSRWWILPNPTYGGWEGAAINNAWSLPADLRNGAKREALELAR
>NZ_CP014274.1|WP_062170735.1|4093296_4093962_+|YceH-family-protein
MTDTSQTPDFPVLDPALARVLGCLIEKEATTPDAYPLTVNAAQVAANQKTAREPVMSLETGKVQHALRQLETMGLARQHFSSRAERYEHLAGIKLDLPRQQVALLGLLLLRGPQTTAELATRSERMARFADAADLRHQLERMQQRGLVVQLPRASGQREDRFMHLLSGPVDVEALAANYRASTTAAATLDNSALEDRVQQLETTVAALQAQLAALQEQLGG
>NZ_CP014274.1|WP_062170737.1|4094087_4094609_-|GNAT-family-N-acetyltransferase
MSLIQTERLQLRLLRDDDGDAAGMLQLLNEPGFHQFIGDRGVRTLEQARDYVRKHTFGSYTAHGFGMYAVERRSDGAWLGNAGLVRRPGLPTADVGYALLSPHTGQGYAREAVQAVLAYARASLGLGELRAIVSQGNARSVALLEKLGFDRDGTVVLPGEVEQLLMFVHRPNR
>NZ_CP014274.1|WP_062170740.1|4094849_4096835_-|AAA-family-ATPase
MLDSLNPPQRAAAVHAEGPLLVLAGAGSGKTRVIVEKIAHLIGIGRYSARRIAAITFTNKSAKEMRERVAKRLRAEDAAEVTICTFHALGLKFLQIEHEHVGLKRSFSIFDADDAGAQIKDLLGGSNAKPDDIEDMKNLISRAKNSGLSPEQAMAAARSNREKDAAMVYELYQARLTSFNAVDFDDLIRLPVQVLEENPDIALAWRERIGYLLVDECQDTNDAQYRLLKQLAGPRGNFTCVGDDDQSIYAWRGANPENLQQMAVDYPALQIIKLEQNYRCSNRVLRAANALIAHNPHEHLKTLWSDQADGERIRVWECRNSEHEAEKVAAEIHFLATSRKIPWSDFCILFRGNFQSRPLEKAMQLVGVPYHLNGGTVFLERQEVKDTLAWLRLIVNPDDDTAFMRAVQSPKRDVGASTLAKLAELASEKDIPMAHAAESMGALAQLTPRAANSLSRFTDILRALRLDMRQMSSGDLVRRVAKDSGMLAELRHAAKDTAGYERRANNLEELASWFESGPRGASAADMAAQLALISRNDKDDGGNQVRMMTLHASKGLEFPYVFIVGCEDGVLPHQVSLDEGNLQEERRLLYVGITRAKIQLWMSFSRLTRKFGEHIRLKPSRFFDEIPASEIQRDGADPVADAAHKQERAKAGLAAIQALFD

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Crispr_ID: NZ_CP014274_23

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_23

4099632-4099733

Orphan

Consensus_repeat	Method
GGGGCAAAAGCGGCACTGCTGCGATCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014274_23

>merge|NZ_CP014274|23|4099632-4099733|CRISPRCasFinder
GGGGCAAAAGCGGCACTGCTGCGATCTGAAGGTGCGCGTGAGCTGCCGCCTCCCCTTGGGTTCGCCAAAGGAAAGGGGCAAAAGCGGCCCTGCTGCGATCTG

>NZ_CP014274|23|22|4099632-4099733|CRISPRCasFinder
GGGGCAAAAGCGGCACTGCTGCGATCTG	AAGGTGCGCGTGAGCTGCCGCCTCCCCTTGGGTTCGCCAAAGGAAA
GGGGCAAAAGCGGCCCTGCTGCGATCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062170753.1\|4102609_4103434_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224044
NZ_CP014274.1\|WP_062170725.1\|4087565_4090196_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsB	unknown	unknown	gnl\|CDD\|235325
NZ_CP014274.1\|WP_062170749.1\|4100953_4101283_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372618
NZ_CP014274.1\|WP_156455903.1\|4086790_4086985_+\|DUF465-domain-containing-protein	unknown	unknown	gnl\|CDD\|377305
NZ_CP014274.1\|WP_062170732.1\|4092203_4093106_-\|acid-phosphatase	unknown	unknown	gnl\|CDD\|319836
NZ_CP014274.1\|WP_062170742.1\|4096958_4097579_+\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
NZ_CP014274.1\|WP_062170759.1\|4108257_4110588_-\|TonB-dependent-receptor-plug-domain-containing-protein	unknown	unknown	gnl\|CDD\|238657
NZ_CP014274.1\|WP_062170735.1\|4093296_4093962_+\|YceH-family-protein	unknown	unknown	gnl\|CDD\|377312
NZ_CP014274.1\|WP_062170755.1\|4103473_4104658_-\|DUF4785-family-protein	unknown	unknown	gnl\|CDD\|374306
NZ_CP014274.1\|WP_062170730.1\|4091487_4092207_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NZ_CP014274.1\|WP_062170762.1\|4110757_4111771_+\|TIGR00266-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP014274.1\|WP_062170745.1\|4097786_4099391_-\|glucan-biosynthesis-protein-D	unknown	unknown	gnl\|CDD\|237327
NZ_CP014274.1\|WP_062170747.1\|4099824_4100637_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|234899
NZ_CP014274.1\|WP_062170723.1\|4085785_4086715_-\|tRNA-2-thiocytidine(32)-synthetase-TtcA	unknown	unknown	gnl\|CDD\|236737
NZ_CP014274.1\|WP_062171948.1\|4105838_4106675_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239491
NZ_CP014274.1\|WP_156455904.1\|4104669_4105545_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_082746652.1\|4106947_4108132_+\|glycoside-hydrolase-family-18-protein	unknown	unknown	gnl\|CDD\|214753
NZ_CP014274.1\|WP_062170737.1\|4094087_4094609_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP014274.1\|WP_062170740.1\|4094849_4096835_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|130146
NZ_CP014274.1\|WP_062170751.1\|4101279_4102482_-\|aminotransferase	unknown	unknown	gnl\|CDD\|224316

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062170753.1\|4102609_4103434_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	2.02847e-60
NZ_CP014274.1\|WP_062170725.1\|4087565_4090196_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsB	gnl\|CDD\|235325	PRK04974, PRK04974, glycerol-3-phosphate 1-O-acyltransferase PlsB.	0
NZ_CP014274.1\|WP_062170749.1\|4100953_4101283_-\|hypothetical-protein	gnl\|CDD\|372618	pfam13499, EF-hand_7, EF-hand domain pair.	5.05145e-05
NZ_CP014274.1\|WP_156455903.1\|4086790_4086985_+\|DUF465-domain-containing-protein	gnl\|CDD\|377305	pfam04325, DUF465, Protein of unknown function (DUF465). Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C terminal of the motor domain (Myosin pfam00063, Kinesin pfam00225). Members of this family may form coiled coil structures.	1.44623e-08
NZ_CP014274.1\|WP_062170732.1\|4092203_4093106_-\|acid-phosphatase	gnl\|CDD\|319836	cd07534, HAD_CAP, molecular class C acid phosphatases, similar to Haemophilus influenzae e (P4) acid phosphatase; belongs to the haloacid dehalogenase-like hydrolase superfamily. Molecular class C acid phosphatases (CAPs) are nonspecific acid phosphatases with generally broad substrate specificity and optimum activity at neutral to acidic pH. Members include Haemophilus influenzae lipoprotein e (P4), Elizabethkingia meningosepticum OlpA, Helicobacter pylori HppA, Enterobacter sp. 4 acid phosphatase PhoI, and Streptococcus pyogenes M1 GAS LppC. Lipoprotein e (P4) exhibits phosphomonoesterase activity with aryl phosphate substrates including nicotinamide mononucleotide (NMN), tyrosine phosphate, phenyl phosphate, p-nitrophenyl phosphate, and 4-methylumbelliferyl phosphate. The role of P4 in NAD+ uptake appears to be the dephosphorylation of NMN to nicotinamide riboside, which is then taken up by the organism. Elizabethkingia meningosepticum OlpA is a broad-spectrum nucleotidase with preference for 5'-nucleotides, it efficiently hydrolyzes nucleotide monophosphates, with a strong preference for 5'-nucleotides and for 3'-AMP; OlpA can also hydrolyze sugar phosphates and beta-glycerol phosphate, although with a lower efficiency. Helicobacter pylori HppA is also a 5' nucleotidase. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.2861e-77
NZ_CP014274.1\|WP_062170742.1\|4096958_4097579_+\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	4.42017e-109
NZ_CP014274.1\|WP_062170735.1\|4093296_4093962_+\|YceH-family-protein	gnl\|CDD\|377312	pfam04337, DUF480, Protein of unknown function, DUF480. This family consists of several proteins of uncharacterized function.	6.37364e-68
NZ_CP014274.1\|WP_062170755.1\|4103473_4104658_-\|DUF4785-family-protein	gnl\|CDD\|374306	pfam16024, DUF4785, Domain of unknown function (DUF4785). This family of proteins is found in bacteria. Proteins in this family are typically between 392 and 442 amino acids in length.	2.55743e-12
NZ_CP014274.1\|WP_062170730.1\|4091487_4092207_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	3.68179e-105
NZ_CP014274.1\|WP_062170762.1\|4110757_4111771_+\|TIGR00266-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	2.1018e-82
NZ_CP014274.1\|WP_062170745.1\|4097786_4099391_-\|glucan-biosynthesis-protein-D	gnl\|CDD\|237327	PRK13273, mdoD, glucan biosynthesis protein D; Provisional.	0
NZ_CP014274.1\|WP_062170747.1\|4099824_4100637_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	2.18101e-161
NZ_CP014274.1\|WP_062170723.1\|4085785_4086715_-\|tRNA-2-thiocytidine(32)-synthetase-TtcA	gnl\|CDD\|236737	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional.	0
NZ_CP014274.1\|WP_062171948.1\|4105838_4106675_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239491	cd03397, PAP2_acid_phosphatase, PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases. These enzymes catalyze phosphomonoester hydrolysis, with optimal activity in low pH conditions. They are secreted into the periplasmic space, and their physiological role remains to be determined.	1.83451e-82
NZ_CP014274.1\|WP_062170759.1\|4108257_4110588_-\|TonB-dependent-receptor-plug-domain-containing-protein	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.54623e-43
NZ_CP014274.1\|WP_082746652.1\|4106947_4108132_+\|glycoside-hydrolase-family-18-protein	gnl\|CDD\|214753	smart00636, Glyco_18, Glyco_18 domain.	4.06921e-110
NZ_CP014274.1\|WP_062170737.1\|4094087_4094609_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	7.55262e-30
NZ_CP014274.1\|WP_062170740.1\|4094849_4096835_-\|AAA-family-ATPase	gnl\|CDD\|130146	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP014274.1\|WP_062170751.1\|4101279_4102482_-\|aminotransferase	gnl\|CDD\|224316	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism].	9.42984e-74

>NZ_CP014274.1|WP_062170745.1|4097786_4099391_-|glucan-biosynthesis-protein-D
MQRRDFLRNAAAALAAFGLPTFTACAAGKPAQLGLRRLGQPQTFDFATLKGQARALAQAPYKSHKRTLPGALEKLDWDQYQSISYRQDHALWADQPGKFQAKFFHLGLYFHSPVRMFDVVDGKAQELAYDGAAFNYGKSGIHDGELPADLGFAGFRLNTRTDTDRDFAAFLGASYFRAVGKEGQYGQSARAVAIDTGMGRPEEFPDFIAYYLEQPAADSDTLVVYGLLDSPSVAGAYRFAITNGDVLLMDIDSALYPRKEIERLGIAPCTSMYQVGENDRRMDWDWRPEIHDTDGLSMWNGAGEWIWRPLCNPANLRFNMFVDNNPRGFGLLQRDRNFDHYQDDGVFYEKRPCLWVEPKGQWGEGSVQLVEIPTVDETFDNIVAFWNPKAKPQPGQELLVGYRLYWGAEPPARPPLAHCVASRTGLGGIIGKKREYFSWRFAVDFEGGELASLIDKGEVEAVVETSRGRVEVVSARPLREIKGYRAMFDLVPPEGSTEQIDVRLYLRSGGKTLTETWLYQYTPPAAGAPERTLY
>NZ_CP014274.1|WP_062170742.1|4096958_4097579_+|thymidine-kinase
MAKLYFYYSAMNAGKTTTLLQSAHNYRERGMRVALLTPHLDHRAGTGVVASRIGLQAEATTFERDTDLQKLIQQDMAAHGRLGCVLVDEAQFLSKAQVWQLSEIVDQLRIPVLCYGLRTDFRGELFEGSQYLLAWADEIQEIKTICHSGKKATMTVRVDENGFAVQDGPQVEIGGNERYVSVSRAEFKKITRGEGRIDPMQAPLPL
>NZ_CP014274.1|WP_062170740.1|4094849_4096835_-|AAA-family-ATPase
MLDSLNPPQRAAAVHAEGPLLVLAGAGSGKTRVIVEKIAHLIGIGRYSARRIAAITFTNKSAKEMRERVAKRLRAEDAAEVTICTFHALGLKFLQIEHEHVGLKRSFSIFDADDAGAQIKDLLGGSNAKPDDIEDMKNLISRAKNSGLSPEQAMAAARSNREKDAAMVYELYQARLTSFNAVDFDDLIRLPVQVLEENPDIALAWRERIGYLLVDECQDTNDAQYRLLKQLAGPRGNFTCVGDDDQSIYAWRGANPENLQQMAVDYPALQIIKLEQNYRCSNRVLRAANALIAHNPHEHLKTLWSDQADGERIRVWECRNSEHEAEKVAAEIHFLATSRKIPWSDFCILFRGNFQSRPLEKAMQLVGVPYHLNGGTVFLERQEVKDTLAWLRLIVNPDDDTAFMRAVQSPKRDVGASTLAKLAELASEKDIPMAHAAESMGALAQLTPRAANSLSRFTDILRALRLDMRQMSSGDLVRRVAKDSGMLAELRHAAKDTAGYERRANNLEELASWFESGPRGASAADMAAQLALISRNDKDDGGNQVRMMTLHASKGLEFPYVFIVGCEDGVLPHQVSLDEGNLQEERRLLYVGITRAKIQLWMSFSRLTRKFGEHIRLKPSRFFDEIPASEIQRDGADPVADAAHKQERAKAGLAAIQALFD
>NZ_CP014274.1|WP_062170737.1|4094087_4094609_-|GNAT-family-N-acetyltransferase
MSLIQTERLQLRLLRDDDGDAAGMLQLLNEPGFHQFIGDRGVRTLEQARDYVRKHTFGSYTAHGFGMYAVERRSDGAWLGNAGLVRRPGLPTADVGYALLSPHTGQGYAREAVQAVLAYARASLGLGELRAIVSQGNARSVALLEKLGFDRDGTVVLPGEVEQLLMFVHRPNR
>NZ_CP014274.1|WP_062170735.1|4093296_4093962_+|YceH-family-protein
MTDTSQTPDFPVLDPALARVLGCLIEKEATTPDAYPLTVNAAQVAANQKTAREPVMSLETGKVQHALRQLETMGLARQHFSSRAERYEHLAGIKLDLPRQQVALLGLLLLRGPQTTAELATRSERMARFADAADLRHQLERMQQRGLVVQLPRASGQREDRFMHLLSGPVDVEALAANYRASTTAAATLDNSALEDRVQQLETTVAALQAQLAALQEQLGG
>NZ_CP014274.1|WP_062170732.1|4092203_4093106_-|acid-phosphatase
MSRFPAFTLLAGAVLSLAACSSTAPLSRVSPAPADALVAPANAPNDNLNAVLWVQRSQEYRASALQTWKLAAAQLDAALADGRWTALLPEEGGSHQAATLKPAVVVDVDETVLDNSPYQARLVHDGASYNDATWEAWVDERKAQPVPGAVQFAQAAAAKGVTMIYISNRTAAMKDATIANLRQVGFPVADDSVYLGLGTPVPGCTEHGSEKGCRRQLVAQQYRVLMQVGDQFTDFLQVEDNSLAARDLLLDKYQGWIGSRWWILPNPTYGGWEGAAINNAWSLPADLRNGAKREALELAR
>NZ_CP014274.1|WP_062170730.1|4091487_4092207_-|orotidine-5'-phosphate-decarboxylase
MSRAPLPLRADERLIFALDVPGKAEAIEWVDKLGNAVSFYKIGMELLASGEYFDVLEELAKRDKRVFVDLKFFDIPATIAGVIRRLSQWPVSYCTIHGWHPGMMEAAAAANTSDMRLLAVTVLTSMGRPDLAQMGIDREPVDVVVERALAAQRAGIDGVIASGQEAAPIRAATGQGFSIVCPGIRPGGPVDDDQQRTVGVAQAFADGADAIVVGRPIRLAADPRAAALAMQCEILDSIK
>NZ_CP014274.1|WP_062170725.1|4087565_4090196_-|glycerol-3-phosphate-1-O-acyltransferase-PlsB
MAPMSKQKSQPDQGELLPPDAANATPATPAAIVPGASARPVPVARAARRPLWARLLGKLIEPWLGLKIEPDQAGQHNDGRPVVYVLEDYGLSNALILDKACRDAGLPSPLVPLAGDPTGRKRAYVALSRRSSNNMLLPEQRGAKTHSDSLAKLLQAHRANPGLDVHLVPVSIFVGRAPDKQSGWFAVLFSENWALVGRFRRLLAILLNGRDTIVRFAPPVSLRETVDEGLEPERTVRKLQRVLRTHFRRIRESIIGPDLSTRRLLVDKVLESDPVREAIATQAKRDNSKTTDAWKKAQGYAWEIAADYSTPVVRSASFMLSHVWNRIYAGVLVHHLDKFKEAAPGHEIIYVPSHRSHMDYLLLSYLLYDRGIVPPHIVAGINLNLPVVGTLLRKGGAFFIRRSIKGNALYSAVLSEYVAQLVAGGYSIEYFVEGGRSRTGRLLQPKGGMISMTLRAFLRQPRRPVLFQPIYVGYEKLMEGNSYLDELTGRPKEKESIWALLWGIPKVLKQNYGQVVVNFGEPIALNDVLAKMAPEWDGQPVPEDEKPSWLAGTVDVLAEQIQERINAAADVNPINLLALALLSTPKHAMGEADLIAQIELCKKLLVEMPYSDRVTVTPHSPERIIAHAEEINVLSRIKHPLGDVLSVSGDTAVLLSYFRNNVLHLFTASSWVACCFQNNRRMSRGGLLRLGRGLYPFLQAELFLPWTEDEFAARIDQTIDVFVREGLLQHVGEDDGGMLARSTGQTDEVFRLRAIGHSLQQAFERYYIAISVLVKNGPGTLGAGELESLCQQAAQRLSLLYAPAAPEFFDKTLFRGFIQKMRELRLVWPDQNSKLLFDERLDAWAKDAKFILGRELRHTIERVSPEAVKAEVPPVV
>NZ_CP014274.1|WP_156455903.1|4086790_4086985_+|DUF465-domain-containing-protein
MTPEQISQRIAVLRAEHRSLDENIARLAANPDDDLEAKRLKKRKLQLRDCITRLECMLIPDEPA
>NZ_CP014274.1|WP_062170723.1|4085785_4086715_-|tRNA-2-thiocytidine(32)-synthetase-TtcA
MSAVISLPDPAPRARDPHAAEREHQKLGKRLRHQVGQAIADFGMIEAGDKVMVCLSGGKDSYTLLDVLLQLQKKAPVPFELVAVNLDQKQPGFPEHVLPEYLASIGVPYHIIEQDTYSVVSRVIPEGKTMCSLCSRMRRGSLYTYAEANGFTKIALGHHRDDMVATFFMNLFHHSKISGMPPKLRSDDGKHVVIRPLAYVREADIIEYADARQFPIIPCNLCGSQENLQRKQIGLMMKQWEKDTPGRIEQISRALGDIRPSQLADPKLFDFLSLGRRENAPQSDAQAWLDGSDKQQDQQALLPSGEGLG
>NZ_CP014274.1|WP_062170747.1|4099824_4100637_-|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVETTRRGLEPHLVNRSIHGVILRRPDLRWPIPAEIEQLLPGQRIEAIRRRAKYLLLDTERGSAVLHLGMSGSLRVLPGDTSVRAHDHVDISLEDGRLLRFNDPRRFGSLLWQPAGETHELLRDLGPEPLDADFDGDYLFQRSRGRKAPIKTFLMDQGIVVGVGNIYAAESLFMAGINPLREAGKVSRARYQRLADAVKEILGHAIQRGGTTLRDFISPDGAPGYFEQELLVYGREGETCKQCGRALRYASIGQRATVWCGYCQR
>NZ_CP014274.1|WP_062170749.1|4100953_4101283_-|hypothetical-protein
MKTILLVCLLAAALPVAAQVQDTNEYLQRMDSDGDGRVSPDEYLQWMLYAFDKMDRNGDGVLEAAEQPGGRGKPIGRDEQRQVILARFARQDANGDGYLSARELMAPPR
>NZ_CP014274.1|WP_062170751.1|4101279_4102482_-|aminotransferase
MPDVLLDFLTGGIAGLGWWGMLAVLLVFTQLTIFAVTLYLHRSQAHRGVEFHPLVSHFFRFWVWLTTSMITREWVAIHRKHHAKVETEDDPHSPVTKGIGNVFWRGVELYREARTLRGDIEQYGRGAPEDWIERKLYTPHANLGPVSLFVINTVLFGLPGIALWAIQMAWIPFWAAGVVNGLGHWWGYRNFESADTSTNLTPWAFWIGGEELHNNHHAFPSSARFSMRRWELDIGWQVIRVLQFLRLATVLRVAPSMDIRPNIAVPDADTLKALLSHRFQAMTDYQRNVFTPALKEEAAAAGAKLRKLLPRRMRKGLVNDGRWLKPDCRVQLNNWVQQRPRIQLLVEHRARLSALLEARSHDAAERLRQLQQWCQEAEASGSAALQAYAARLKGYSLSGA
>NZ_CP014274.1|WP_062170753.1|4102609_4103434_+|ATP-binding-cassette-domain-containing-protein
MPTAPAADAAPLIELDHACVIRGQVRVLHELNLRIAQGQHTAILGPNGCGKSSFIKLITRELYPLARADGQVPVKVMGQTRWQVDRLRAQLGIVTGDLSSNLSDMPGLSVEEAVISGFFASYVVPAHRDVTDAMRQRVRHALELARALPLLGRSYAELSAGETRRVLIARALVNQPKALLLDEPSTGLDLISRHHLIDSMRHLAQQGITLVLVTHHIEEVIPEINRVVLMKGGRIFADGTRAELLQSAPLSEVFGGSIDVAEQDGRLQAHVLSA
>NZ_CP014274.1|WP_062170755.1|4103473_4104658_-|DUF4785-family-protein
MNKQTTLMLALALACNGAAMVAAQAAVVDRVAPAVVSAAVPAGEFEHAPVQFAWALNPADVVSAPEPEVMESRSSWRMVEAAELQSGVDVPVSAAGAVIQLSPARGAKALDVQSLQVREGSAPVAARRFERAALKDAGMAVAPGTAMLKLQDSQPGRYRVQATDARGSYVMQVLEPDSPMVLRARTDRSVALAGDTLRAQVNMDGVQSTRAEVAARLAASRFTAEGLLVAPDGRTWTVPMRSDKAGGLVADVAIPAGGSDVQGLWELQVFADQGGIARDTRLAFAVARPTARLASAVRATSLSDLRFPVQVGAPGRYEVRTTLFATGTDGKLRAVAQGHSAAWFAKPGRGELALSFAGVKLPAGYAAPYELREVELHDQTRMAPIERRARAVRF
>NZ_CP014274.1|WP_156455904.1|4104669_4105545_-|hypothetical-protein
MSMKGKWLWAGLALAATSTAVNAADVVGVAFVHGTGKQTNALADYWQPDIVNTVRAGLPNSANYTVINCDFTQYMWKPDAAGCLAGQLTSFINSRGITKLVVITHSNGGNVMRWIMSNPTWDSRYPAIITRLHKVNALAPSSAGTPLADAVMNGNVFEQALGWLLGYESDAVRMQQVSWMATYNANNLYGTAGRPALPKPFRAVVGTEVESSPFDSDSYCGGYAQNVGLEATQNWLASCSDGFLNCSSQSAAGSVWFRDVSRTRDAEPLSHAQSRRNCFNLDTILRADVNL
>NZ_CP014274.1|WP_062171948.1|4105838_4106675_+|phosphatase-PAP2-family-protein
MFRFARLSRLGLALATAALLGACSTTGSHPDGQPLTPARAVGYLQDGAIPDSLALSPAPPAAGSVAAQLDEAVATQAMALRGSARFVQAHTDADLSFPAGANQFSCALGVAVTAETTPVLYQLLERSRIDASAATKAAKTHYQRPRPFMVNNAPTCTPDDEQGLRDSGSYPSGHTAIGWAWALILSEIDPQHATALIERGRSYGHSRLVCNVHWYSDVQQGQFMGAATVARLHDNPEFAADLAQARKELVHARTLNLPMPRDCAAETAALTSDIPEAH
>NZ_CP014274.1|WP_082746652.1|4106947_4108132_+|glycoside-hydrolase-family-18-protein
MVSDVTALARWWLLRVQSKVHSLGTLMPVFLRYPRLQALLIAALLPFAVQAQSPRLIGYVMDSPAPLQLSARKLDVVNFAFAVVKPDSTVHLPENVDPARLHAVVAKRADNPSLQIVLSIGGWGAGNFSEAAASAAARARFIDSSVALMHQFKLDGLDVDWEYPTLGDAGISHSPDDRHNFTLLLEELRARLDREGAGKRHYLLTIAAAEGRAAEGLELPRIAQSLDWINLMTYDFYGSLTKTTGHHSGLARSSLATPQGRTTVDAVKYFLDAGVPAAKINVGVPFYGRTFGDVGTANNGRFQKFTAEGGFITWRDIVHTCLNAPEWQRLWDDEAQVPWLWNAKERRMISYDDPQSLRIKADYVKQQGLGGIMYWEQGGDDNEQLLDVLHDALR
>NZ_CP014274.1|WP_062170759.1|4108257_4110588_-|TonB-dependent-receptor-plug-domain-containing-protein
MSPTRIARRRLPAAHPLFVAVLAVLPFTAAAQDATTAQKEAATLDAVKVTAARKVENIQDVPVSISTVSGEKLDALASGGTDVRYLSGRVPSLNIESSFGRAFPRFYIRGYGNTDFRLNTSQPVSLVYDDIVQENPILKGFPIFDVEQVEVLRGPQGSLFGRNTPAGVVKFDSVRPSQEFEGYGKVGYGSDNLWNVEAAVGGALSARWSARVSALYQRRDDWVKNTGPGPNDGLEGYDESAVRAQFLYEGDNFEALLGAHKRHLNGTARLFRGNIFKKGSNDFVPGFDENKVSIDGLNHSELDSSGANARLSWDLGNYKLSSITGYETVDTFSVGDIDGTSGPYFTADVPFASETADGIPSHSQWTQELRLESQNEGPLNWQTGLFYFKEDYDVDSVSYDTTNGSKQDGFQRINQTNDAWAVFGGLTFQATDKLELRAGARYTIDKKDLKVKDYWNTGFSPCIAPTLSNPPGVAKCDLAGLLAAQQAAFAAGDAVDPYLSASTKDKKFNWDFSATYAVNDTVNVYGRVATGFRGSSIQSAGAFNDKTVADPETVLSFEAGVKADFWDNRARLNASVYHYRVKDQQLTAVGGAQGNANILLNADKSVGKGFELDLQAYLTDNLLVTLGSGYNHTEIKDADLSVAGCFSCTVTNPLDANGKVLINGNSLPQAPEWTHNMTARWSLPLADGTQLYVFTDWAYRSEVNFFLYQSKEFTGKSLLEGGLRVGYQWNDGDYDVALYGRNITNQIRATGGIDFNNLTGFINEPRLWGVEFKTRF
>NZ_CP014274.1|WP_062170762.1|4110757_4111771_+|TIGR00266-family-protein
MTQWYFHIPGQADRVGPLDDEAARRFAQGNRQALAWREGMQGWQAVSEIAEFGGQTSPPPMPPPVAGNRNQADDIDFRIIGHEMQFVEIELDPGESAIAEAGALMFKDSSVQMDTVFGDGRHEGQGGGFMDKLMSAGKRVITGESLFATLFTHTGNGKAKVAFAAPYPGTVLPMKLDQHGGKLICQKDSFLAGARGVQVGVHLQRKVMTGLFGGEGFIMQKLEGDGWVFVHAGGCVVERELAAGERIDVDTGCVVAYHASVDMDVRRVAGLKSMFFGGEGVFLATLTGPGKVWLQSLPFSRLAGRMYAAAPQGGGQSRGEGSVLGGLGRLLDGDNKF

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Crispr_ID: NZ_CP014274_24

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_24

4357476-4357579

Orphan

Consensus_repeat	Method
TGTAGTGCCGAGCCATGCTCGGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014274_24

>merge|NZ_CP014274|24|4357476-4357579|CRISPRCasFinder
TGTAGTGCCGAGCCATGCTCGGCAAGGGGCAGGAGCAACCCCTCCCCAACCCTCCCCTTGCCTGCGGCAAAGGGAGGGGTGTAGTGCCGAGCCGTGCTCGGCAA

>NZ_CP014274|24|23|4357476-4357579|CRISPRCasFinder
TGTAGTGCCGAGCCATGCTCGGCAA	GGGGCAGGAGCAACCCCTCCCCAACCCTCCCCTTGCCTGCGGCAAAGGGAGGGG
TGTAGTGCCGAGCCGTGCTCGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062171032.1\|4361824_4363240_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|182630
NZ_CP014274.1\|WP_057627937.1\|4361397_4361736_+\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_CP014274.1\|WP_062171035.1\|4363943_4364690_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567
NZ_CP014274.1\|WP_062171013.1\|4346598_4347168_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225228
NZ_CP014274.1\|WP_062171011.1\|4346117_4346594_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|224973
NZ_CP014274.1\|WP_062171027.1\|4357722_4358532_-\|META-and-DUF4377-domain-containing-protein	unknown	unknown	gnl\|CDD\|379548
NZ_CP014274.1\|WP_062171016.1\|4349179_4349608_+\|hotdog-fold-thioesterase	unknown	unknown	gnl\|CDD\|182360
NZ_CP014274.1\|WP_062171020.1\|4352877_4353669_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP014274.1\|WP_082746664.1\|4353723_4354713_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223506
NZ_CP014274.1\|WP_156455917.1\|4347164_4349150_+\|phospholipase-D-family-protein	unknown	unknown	gnl\|CDD\|197210
NZ_CP014274.1\|WP_156456017.1\|4350094_4352632_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|183097
NZ_CP014274.1\|WP_062171022.1\|4354770_4356840_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP014274.1\|WP_062171040.1\|4365766_4367203_+\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|273818
NZ_CP014274.1\|WP_062171025.1\|4356853_4357465_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl\|CDD\|176643
NZ_CP014274.1\|WP_062171029.1\|4358615_4359410_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NZ_CP014274.1\|WP_062171030.1\|4359623_4361033_+\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|181884
NZ_CP014274.1\|WP_062172013.1\|4345466_4346099_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|349760
NZ_CP014274.1\|WP_062171033.1\|4363484_4363706_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062171041.1\|4367406_4369890_+\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP014274.1\|WP_062171037.1\|4364718_4365774_+\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226370

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062171032.1\|4361824_4363240_+\|ammonium-transporter	gnl\|CDD\|182630	PRK10666, PRK10666, ammonium transporter AmtB.	9.97158e-170
NZ_CP014274.1\|WP_057627937.1\|4361397_4361736_+\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	7.24443e-56
NZ_CP014274.1\|WP_062171035.1\|4363943_4364690_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	7.48333e-53
NZ_CP014274.1\|WP_062171013.1\|4346598_4347168_+\|hypothetical-protein	gnl\|CDD\|225228	COG2353, COG2353, Uncharacterized conserved protein [Function unknown].	4.1465e-26
NZ_CP014274.1\|WP_062171011.1\|4346117_4346594_+\|histidine-phosphatase-family-protein	gnl\|CDD\|224973	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms].	2.93656e-49
NZ_CP014274.1\|WP_062171027.1\|4357722_4358532_-\|META-and-DUF4377-domain-containing-protein	gnl\|CDD\|379548	pfam14302, DUF4377, Domain of unknown function (DUF4377). This domain family is found in bacteria and archaea, and is approximately 80 amino acids in length.	2.1504e-27
NZ_CP014274.1\|WP_062171016.1\|4349179_4349608_+\|hotdog-fold-thioesterase	gnl\|CDD\|182360	PRK10293, PRK10293, 1,4-dihydroxy-2-naphthoyl-CoA hydrolase.	3.58489e-47
NZ_CP014274.1\|WP_062171020.1\|4352877_4353669_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	1.5465e-35
NZ_CP014274.1\|WP_082746664.1\|4353723_4354713_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|223506	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only].	7.3195e-31
NZ_CP014274.1\|WP_156455917.1\|4347164_4349150_+\|phospholipase-D-family-protein	gnl\|CDD\|197210	cd09111, PLDc_ymdC_like_1, Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins. Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins. In Escherichia coli, there are two genes, f413 (ybhO) and o493 (ymdC), which are homologous to gene cls that encodes the Escherichia coli cardiolipin (CL) synthase. The prototype of this subfamily is an uncharacterized protein ymdC specified by the o493 (ymdC) gene. Although the functional characterization of ymdC and similar proteins remains unknown, members of this subfamily show high sequence homology to bacterial CL synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Moreover, ymdC and its similar proteins contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characteriszes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer.	1.2156e-65
NZ_CP014274.1\|WP_156456017.1\|4350094_4352632_-\|EAL-domain-containing-protein	gnl\|CDD\|183097	PRK11359, PRK11359, cyclic-di-GMP phosphodiesterase; Provisional.	0
NZ_CP014274.1\|WP_062171022.1\|4354770_4356840_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	2.00316e-25
NZ_CP014274.1\|WP_062171040.1\|4365766_4367203_+\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0
NZ_CP014274.1\|WP_062171025.1\|4356853_4357465_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl\|CDD\|176643	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.	2.47712e-48
NZ_CP014274.1\|WP_062171029.1\|4358615_4359410_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	6.15502e-83
NZ_CP014274.1\|WP_062171030.1\|4359623_4361033_+\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
NZ_CP014274.1\|WP_062172013.1\|4345466_4346099_+\|ParA-family-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	2.19063e-32
NZ_CP014274.1\|WP_062171041.1\|4367406_4369890_+\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	5.40864e-66
NZ_CP014274.1\|WP_062171037.1\|4364718_4365774_+\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	8.99795e-109

>NZ_CP014274.1|WP_062171025.1|4356853_4357465_+|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MKLDSQSFHNGQPLRAEFAAGDANGFAGNRNPQLSWRDVPAGTRSFALICVDPDVPTVPELVGRDDVSIPLDQPRADFVHWVMVDVPAELREIAAGSCSDGFIAHGKTQPAGPAGARQGINDYTGWFAGNAQMAGTYYGYDGPYPPFNDERLHRYFFRLFAVDVERLPVEGAFTAADVYRAMQGHVLAEAAVHGTYTLNPKLA
>NZ_CP014274.1|WP_062171022.1|4354770_4356840_+|tetratricopeptide-repeat-protein
MQDKIIEALRRNATDEAVSLAQAWVGAEPQQAQAHRWLALSLQQQEQLEQAQASLEVALGLAPDDAALHLQHAGLLLALRQIDAAGQALDRSTSLNPNEFSAYLMQAHLALGRDDIDEADRLSRMAARVDPDSPELGTIEGMVALRRGDADRALAILSAAATKLPGDVRVLYALGFAYLGKDMLAFAEQAFRRVIELNPGNHALRGLVVQLALRQGHLDRAAEMMREVLATAQGDTPGLRRLAGELELASDQPLQALEHLRPLLQQVPGDRAALQMLLMAWQRLGREEEARSELDAAVQAHTQHHDLWMARLAVAPVGSEEAVDVVERWLAAMPEHLPALEARMRLHDMNDQAEEAEAVAHHIIALEPGRVSGEQRIVEALLQREPAAAIAHVQRLLDNAPEPARLAVRSWLGATQDRAGDHAAAVATWLQMHEEMAPNRLPLPQQARAPAEWPAMGEVAADNPVRPMFLWGAPGSGVERVATVMAAGSRVLRGDRFGPNPPNDAFQNFLTLQRLATDALTPEQLVQQWRDALPARGIEDGNVIDWLLWWDNALLWALRPQLPEGRLVIALRDPRDMLVEWLALGAPAPLAVTSSNEAAQWLARALAQVALLHEQDLYTHLILRTDDAVNDPAAMGALLEQAFGLRFPPVRSLGQGTIDAGHWRKYAQVLASEFALLTPVAVRLGYPEA
>NZ_CP014274.1|WP_082746664.1|4353723_4354713_+|alpha/beta-fold-hydrolase
MLSACNYQPPRWLRNPHLQSMLASSRVRLRRGQQLLAGSGALTQELILDGGDGVRLQAWHSRLPGTTPKALALLLHGWEGSAESSYMRMTAARLLEQGFEVVRLNFRDHGNTHHLNPGIFHSCRIDEVVNAAADVAQRFAGLPMVAAGYSLGGNFVLRLALHAPAAGVPLLHVASVCPVLDPAITMDSIERGPAMYDWYFRRKWTGSLRRKRALFPELADWDDSVLKLDIRALTGWLVDHHTEFGSLQEYFDGYSIAGNKLAALQVPADILMAADDPVIPFTTFDHWQLPASAHLEIARWGGHCGFIENLRGDGFSERWVAQHLAAAVG
>NZ_CP014274.1|WP_062171020.1|4352877_4353669_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MTSPRPARQGGVARVFRYLYRAPLLLVHIVLFLPLILLLMTQPWGRMGPANNPLEERVVRWWSGGLMWIFGFRLQRYGQPLPGAVLFVANHVGWVDISVIHSQKMVGFVAKREIAGWPVVGWVASRGHTIFHQRGNTESLGGVMEEMVKRLQEQRPVAVFPEGRTRGGHDVGPFHARIFQAAVEAGVPVQPIALRYGVRGDAQTTVAFAPGESFFGNFLRLLGEPARRGEVHFLEPIAVQDLEGRRRIAETSRARIVAVMEGP
>NZ_CP014274.1|WP_156456017.1|4350094_4352632_-|EAL-domain-containing-protein
MLHLFSAALEQIGNGVILFDDANTILYVNHAMENISGWSRAELQGKNLGTLAPASMRERYNTRLYPGASNRVQELAADPHDIQLVRKDGVACWISVTLSQIADNGRNIHLALVNDVTARRLAQARERLLSLGFDETQSAVLITDADGRIVHLNKGFRRLFGFLDSEAMGQYVPALLSPHDYSPEQIANYLSRLLAGQPIRGDERLYRKNGQPLWCSVSTNPIFDDYGTLVNLVIVLMDITRTKVHEVLQHKMLDAMVREVPTAEVMQMMCLEVEKIAPQVLCSVLRVEDGRLRHLAGPSLPEAYIRLVDGVPVGPKTGTCGTAAYSGQTVLSRDIATDPNWEGLSHLALQHGLAACWSTPIKANDGRVLGTFAFYCRQPYDPDEFHYRLVEVIVHLCALALEREEARNRIRRLAFYDDLTGLPNRSLLHAQADQAITAASHQGQTLAVMFIDLDRFKQINDSFGHPGGDELLRTVARRLQEETGPMDIVGRLSGDEFVVVLNRCDMPTASERSERILRTLGLPLPLGDMEIRPSASIGISIFPHDGNEMDSLLHHADVAMYQAKHNGRNRVRFYSSEMDECAQERMALEAALREALEQGQLQLHYQPQIDIHSGRLHSVEALARWQHPRLGSVPPIRFIPLAEEAGLIGDLGQWALGEACRQLARWRRDGLQVPSVSVNLSPTNFHSAALPEWISQILQQESLCASDLTLEITEDVLLDGDPITLQTLHQVHALGVRLSMDDFGTGYSSLSYLRQLPISELKLDRSFVHGIEGDKVASALTQAIAHIGQSLQLKVVAEGVESVEQLRLLGAQGYQIAQGFHFTPALPAPALALWVREHLPVAVPV
>NZ_CP014274.1|WP_062171016.1|4349179_4349608_+|hotdog-fold-thioesterase
MSQVFRAPVDLQLVNAMSRNTLIDHLGIVFTAAGDDWLQATMPVDARTKQPYGLLHGGASVVLAETLGSSAGNLCVDPAEQVCVGLEINANHLRAARSGVVTGTARALHVGRTTQVWEIRIEDEAGKPVCISRLTLAVVARG
>NZ_CP014274.1|WP_156455917.1|4347164_4349150_+|phospholipase-D-family-protein
MKPVIRLLLMLAALLASGCASLSNQQRERAQGIAVAARSTVIDCDRPDRCALDSPLRALGGQAIAESTAQLPRHYATIVDEGELALVARLNLIRSATRSVDLQTYIFDTDDSARMVIDELLAAARRGVKVRVLIDQLSAISDVQMLGALAGAHANFELRVYNPAFGKAKLNYFDYAGSVLCCFRRFNQRMHNKLLVIDDVIGVVGGRNYQDDYYDWDKEYNFRDRDVVVAGPEAREMAANFQAFWDARRSVPAERLNDVGKTLLNEGVPAMPQAAFRRPERIARVDVEASDPQFIQEAFVATALPVRSVSYVADLPRKHRREREAQPLNGQHLTEPRLDALISHAQTEVLLQTPYLVLSKPAQALFKGLRQRETPPRVVVSTNSLAATDNPIVYALSYKYKRRNMRELGFNIYEYKPFPLDAPINYAQLLPAPLEGEPSLRPQPTSRNRLIGGSAAGSNVRGSGSGRRLSADGSEVERDVLRTETRPSFLGTRAVNKPLPVTRRGARMGLHAKSLVVDRRIGVIGTHNFDPRSENYNTEGAVIIDDPVFAEQLAQSILRDVHPDNSWVVAPREKPPVLSGLNYSLGKASEALPVLDFWPWRYATDYAFVPGPECPQPLRRQDPRFHTCYTAVGDFPEVDVGPKWVLVRMLTAFGAGLVPIL
>NZ_CP014274.1|WP_062171013.1|4346598_4347168_+|hypothetical-protein
MAAARSGLLLLLLMLAGSALAAEPLHFDTAHSRFGFEIRTRFGQKVEGVFPRFEGWITVLPDGRHQVRLRMYSEYVEIPDRPRYTGWIRGEDFFDAARYPVVEFDSDPYPPQLTQTGGDLQGRLSIRGISRPEVMRLAKPECARPGYDCDLVSRGVILRGRYGMDSWQMALSDRVIFVLRTRLVGAPKT
>NZ_CP014274.1|WP_062171011.1|4346117_4346594_+|histidine-phosphatase-family-protein
MRELILLRHAHAEPAADGQADIDRPLSPHGLAEAEAAGRWLQEHKLVPDRVLCSPARRTRETLEAVLERTGYVEQRLEERIYDAVPGTLAALLDEHNEVERLLVVGHNPGLEQLVALMHSGQTGDYRGMPPASVAVLSLPMEASIEPGIAKLTAFWWP
>NZ_CP014274.1|WP_062172013.1|4345466_4346099_+|ParA-family-protein
MKTILVAGSKGGVGKTTIATHLAAHSALAGKATVIADADPQGSSTRWAQRRSSLESAVLPVDVHRKKNWEKLIPDGAEQVIIDAPAGAYGEDLERFIDTADAVVVPVLPSALDIEAIVGFLNSLAKIKRIHSRAVPVGLVLNRTKPWTQTSQQARQMLAEWPYEVVAQLRDSQSYVVMVGLGRSLFDYHSAQVREHQQDWEPLLKWLNKV
>NZ_CP014274.1|WP_062171027.1|4357722_4358532_-|META-and-DUF4377-domain-containing-protein
MKRILLLALPIALMTACSNPPASTKSETTAAPSTSTAAPAANIDAAQLGANHWLLDNAVDSAGKRVDGLFVNADKPLTLDFKDGRLSVSNACNNLGGAYTLEGNTLTVGNMMSTNKACQGPLMALDGLASERLQGKLTVQALDASAMRLVAANGDVLSFRAEPTAETRYGGAGETVFMEVDAQAKPCPHPLMKDATCLQVREVKYNEQGLEQGKRGAYENFYGNIEGYKHEPGVRNVLRLKRYQIKNPPADAPSQAYVLDMVVMSETVK
>NZ_CP014274.1|WP_062171029.1|4358615_4359410_-|undecaprenyl-diphosphate-phosphatase
MSDLLSALLLGILEGLTEFLPISSTGHLLIAQHWLGARSDFFNIVIQAGAILAVVLAFRQRLWTLATGLNQAENRDYVMKLGVAFLVTAIVGLPVRLAGWELPETVTPVAWALVIGGVWMLLAERFAGRLPDSTTITWKVAVAVGLAQVVAGVFPGSSRSAAAIFVAMLLGLTRRAAAAEFVFLVGIPTMFAASGYALLEMAKKGQLGSENWTDVSVAFVAAAITGFIVVKWLLSYIKRRPFTGFALYRIALGFGLLLFLPAGN
>NZ_CP014274.1|WP_062171030.1|4359623_4361033_+|type-I-glutamate--ammonia-ligase
MSLENVEKLIKDNQIEFIDLRFVDMRGIEQHVTFPASIIEPSLFEEGKMFDGSSIAGWKGIAESDMVLMPDADSAYIDPFYADPTLVLTCDVLDPATMQGYGRCPRGIAKRAESYLKSSGIADLAFFGPEPEFFIFDSVQFANDMGNSFYKINSEEGSWNTGKSYDGTNTGYRPAVKGGYFPVPPTDSLHDIRAEMCKVLEKVGIEVEVHHHEVANAGQCEIGAKFNTLVTKADELQRMKHVIKNVAHRNGKTVTFMPKPLVGDNGSGMHVHQSLAKGGNNLFSGDGYGGLSQMALWYIGGIFKHARAINAFANSGTNSYKRLVPGFEAPVMLAYSARNRSASCRIPWVSNPKARRIEMRFPDPIQSGYLTFTALMMAGLDGIKNQIDPGAPSDKDLYDLPPEEEKLIPQVCSSLDQALEALDKDREFLKAGGVMSDDFIDAYIALKMKEVTAFRAATHPLEYQLYYAS
>NZ_CP014274.1|WP_057627937.1|4361397_4361736_+|P-II-family-nitrogen-regulator
MKLISAIIRPFKLDEVREALGAAGVSGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKIRIETAVTDDNVEAVIEALQGAAGTGKIGDGKIFVTALEQVVRIRTGETGADAL
>NZ_CP014274.1|WP_062171032.1|4361824_4363240_+|ammonium-transporter
MRTEFFTGLKARLGGLCLSFILGAMMLGMFSSSAWAQDTQAQPAATEVAAATTQAAAAPAAAAAATFDKGDVAWMLTATLLVLMMVVPGLALFYGGLVRAKNVLSVLSQVLVVFSLVLILWVAYGYSAVFSTGNQFFGSFTEFAFLKGFTPDSVGNTPIAGLPDFLFVAFQSTFAGITTALIVGAFAERIKFRAVLLFSALWFTLSYIPMAHIVWGGGYLGEMGAIDFAGGTVVHINAGVAGLVAAWFVGKRLGYGQTALKPHNLPLTWIGAMLLWVGWFGFNAGSAAAADTVASLAFINTVLATAAAVLGWTLVEAITKGHPSALGAASGAVAGLVGVTPACGTVGPLGAIVIGFVTGIVCVWGVTGLKRLLKADDTADVFGVHGVGGIVGAILTGVFSAQSLGGTKVDLDIGHQVWVQVVSVGFTVLWSAAVTAAVLLVVRALVGLRVSEEAERTGLDVTTHGESAYEA
>NZ_CP014274.1|WP_062171033.1|4363484_4363706_-|hypothetical-protein
MRDSLKQKFIAVCDARIAAKGPTVGLSFYAFFSNRNDDPESLMEAATWWIQIHRLDHFEKAEKVKALVLAEGL
>NZ_CP014274.1|WP_062171035.1|4363943_4364690_+|N-acetylmuramoyl-L-alanine-amidase
MPDMKTKLLLPLALLASLTACTSTPERNPLAKWVPSPNYNERQPVVIVLHHTEQGSVQESLDTLRTANSGGQVSSHYLVGRDGDLYQLVADGERAWHAGGGRWGGFSDLNSTSIGIEIDNNGSSPFTQPQIATLLRLLEDLCTRYNIPRSQIIGHADLAPTRKADPSRYFPWQQLAEAGFGLWPDPKHGPAPAGFDSWMAMQAFGYALDDRAAAARAFHRRFRGSDTLPAELDVEDARILYSLLQQKQ
>NZ_CP014274.1|WP_062171037.1|4364718_4365774_+|PAS-domain-containing-sensor-histidine-kinase
MTDPDFSPSPDLMATPLVWSDVDGRIQGANPAFCRWLGVSVRRLLGQPLVSLEAQGEALAQRLALPVTDMTRLPRLTLALPGEAPRFADGWLSAVEQGGWLLEAHPVDEFQGADPAQVLPGAFSAALKGLAHELRNPLAGLKGAAQLLARRASGRDADERELIELIGAEIERLNTLLEQLLSPAPQRPHAPLNIHAALERVLRLVENEAGWSVRLLRDYDPSIPEFAGDADRLTQALLNLVRNAIQAGATSVTLRTRVEHGLRIAEQPYALALRLEVADDGRGVPEELAEHLFLPLVSGRAEGTGLGLALAQQVAREHRGTLSYRSRPGHTVFTVLLPLPAAEDAPEVGDV
>NZ_CP014274.1|WP_062171040.1|4365766_4367203_+|nitrogen-regulation-protein-NR(I)
MYKPTAATVWVVDDDRSVRFVLSTALRDAGYSVEGFDSAAAALAALAQQPPPDLLFTDVRMPGDDGLVLLDKLKAAHPQLPVIVMSAYTDVASTAGAFRGGAHEFLSKPFDLDDAVELARRALPEVEEQPAPVAVLAPTQKEEGPPQLIGDTPAMRALFRAIGRLAQAPLSVLINGETGTGKELVANALHRESPRAKGPFVALNTAAIPAELLESELFGHEAGAFTGASKRHIGRFEQADGGTLFLDEIGDMPLALQTRLLRVLAEGEFFRVGGRELIRVDVRVVAATHQDLETLVEQGRFRADLLHRLDMVRLLLPPLRERLGDVPQLAENFLVNAARRLDMPAKRLSVAAVKALREHSWPGNVRELENVCWRLAALAVADTVSAEDVKAALNRGGRATHATPPLAPEHWDRALAAWARQRLAEGASGLHAEARERLDTALLEAALDFTDGHRADAAARLGLGRNTITRKLGPGRRR
>NZ_CP014274.1|WP_062171041.1|4367406_4369890_+|protein-kinase
MLSADAWNRLVELFGQATDLPENERIRFIHAQTADDPVLQRELLALIAADAATDATRRLREPMQRAAELLLQAAEAEVIAGTRFGPWSVERMIGAGGMGRVYLAQRADGAYTREVALKLVNTPALSERRYAHFAYECRLLAHMQHPAIAQIHDAGTDPEGRAYLVMEYIQGQPITAWCDQHRASLRERVALLARVAEGVQHAHQKGVIHRDLKPGNVLVGSVDGQPAPKIIDFGIAIEAEAAQRGSSGGTPGYMSPEQSQPDSDVDARSDVYSLGAILYELACGSCVDADALQSPSQHLQGLAAQRQEQLASARASTPARLRRELRDGLDAIALKALRPARGERYASVSLLLEDLRRWLCHYPPQAAGRTRLLALRKFARRNRLMVGAAAVVGLVLLAGLAASSWALHEARQEAARAKVSSRFLASVLDSMDPAMADGLDRSLMLRVLEDASRRAPHDLAAHPDILADMQLIIAANQIKLEDYPRALAHLQSVRALADQHPGLQQQRLRALQILGDMHVVNGKLAQAQAVLQEGIAEADAGGPGHLRLASDLRSRLAWVWFQQGRAQQALQLAKQALDALDRMGPADDQQRLDAAKRYANMLSTSGDYPRSIALMEDVVQRRTRRNGPDHALTLVARRDLVTTRLRMRDFAGAEPELRQLLAAYERMYGADNAYPMGVRGMLGSALREQGKVAEAGPHYRASMEWCAKRYGAESLSTLVARHNHANWLLAAGQAGQSRDEQKALLAIADRSLGRANHVTAEVLRGLAEAELALGERGSARLHASAALQAMRQVYGDQHAGALRDARATLQKVEAAGTGTVAAGAGAD

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Crispr_ID: NZ_CP014274_25

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014274_25

4363350-4363490

Orphan

Consensus_repeat	Method
TTACCGGGAAAGCCCCTGCCGAGCATGGCTCGGCACTACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014274_25

>merge|NZ_CP014274|25|4363350-4363490|CRISPRCasFinder
TTACCGGGAAAGCCCCTGCCGAGCATGGCTCGGCACTACAGCTCTAGCCCCTCTCCCGTTTAACGGGAGAGGGGTTGGGGTGAGGGCAGCTTTTGGGGCGTTACCGGGAAAGCCCCTGCCGAGCATGGCTCGGTACTACAG

>NZ_CP014274|25|24|4363350-4363490|CRISPRCasFinder
TTACCGGGAAAGCCCCTGCCGAGCATGGCTCGGCACTACAG	CTCTAGCCCCTCTCCCGTTTAACGGGAGAGGGGTTGGGGTGAGGGCAGCTTTTGGGGCG
TTACCGGGAAAGCCCCTGCCGAGCATGGCTCGGTACTACAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014274.1\|WP_062171032.1\|4361824_4363240_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|182630
NZ_CP014274.1\|WP_057627937.1\|4361397_4361736_+\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_CP014274.1\|WP_062171035.1\|4363943_4364690_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567
NZ_CP014274.1\|WP_082746665.1\|4371634_4372522_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062171030.1\|4359623_4361033_+\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|181884
NZ_CP014274.1\|WP_156455918.1\|4372612_4373908_+\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|236440
NZ_CP014274.1\|WP_062171027.1\|4357722_4358532_-\|META-and-DUF4377-domain-containing-protein	unknown	unknown	gnl\|CDD\|379548
NZ_CP014274.1\|WP_065868095.1\|4375129_4375687_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062171020.1\|4352877_4353669_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP014274.1\|WP_082746664.1\|4353723_4354713_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223506
NZ_CP014274.1\|WP_062171045.1\|4370626_4371241_+\|superoxide-dismutase-family-protein	unknown	unknown	gnl\|CDD\|376292
NZ_CP014274.1\|WP_156456017.1\|4350094_4352632_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|183097
NZ_CP014274.1\|WP_062171022.1\|4354770_4356840_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP014274.1\|WP_062171025.1\|4356853_4357465_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl\|CDD\|176643
NZ_CP014274.1\|WP_062171029.1\|4358615_4359410_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NZ_CP014274.1\|WP_062171040.1\|4365766_4367203_+\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|273818
NZ_CP014274.1\|WP_062171051.1\|4374051_4374987_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014274.1\|WP_062171043.1\|4370008_4370581_+\|superoxide-dismutase-family-protein	unknown	unknown	gnl\|CDD\|376292
NZ_CP014274.1\|WP_062171041.1\|4367406_4369890_+\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP014274.1\|WP_062171037.1\|4364718_4365774_+\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226370

Protein	Function_ID	Function_description	E-value
NZ_CP014274.1\|WP_062171032.1\|4361824_4363240_+\|ammonium-transporter	gnl\|CDD\|182630	PRK10666, PRK10666, ammonium transporter AmtB.	9.97158e-170
NZ_CP014274.1\|WP_057627937.1\|4361397_4361736_+\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	7.24443e-56
NZ_CP014274.1\|WP_062171035.1\|4363943_4364690_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	7.48333e-53
NZ_CP014274.1\|WP_062171030.1\|4359623_4361033_+\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
NZ_CP014274.1\|WP_156455918.1\|4372612_4373908_+\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|236440	PRK09268, PRK09268, acetyl-CoA C-acetyltransferase.	0
NZ_CP014274.1\|WP_062171027.1\|4357722_4358532_-\|META-and-DUF4377-domain-containing-protein	gnl\|CDD\|379548	pfam14302, DUF4377, Domain of unknown function (DUF4377). This domain family is found in bacteria and archaea, and is approximately 80 amino acids in length.	2.1504e-27
NZ_CP014274.1\|WP_062171020.1\|4352877_4353669_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	1.5465e-35
NZ_CP014274.1\|WP_082746664.1\|4353723_4354713_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|223506	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only].	7.3195e-31
NZ_CP014274.1\|WP_062171045.1\|4370626_4371241_+\|superoxide-dismutase-family-protein	gnl\|CDD\|376292	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC). superoxide dismutases (SODs) catalyze the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold.	8.74835e-50
NZ_CP014274.1\|WP_156456017.1\|4350094_4352632_-\|EAL-domain-containing-protein	gnl\|CDD\|183097	PRK11359, PRK11359, cyclic-di-GMP phosphodiesterase; Provisional.	0
NZ_CP014274.1\|WP_062171022.1\|4354770_4356840_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	2.00316e-25
NZ_CP014274.1\|WP_062171025.1\|4356853_4357465_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl\|CDD\|176643	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.	2.47712e-48
NZ_CP014274.1\|WP_062171029.1\|4358615_4359410_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	6.15502e-83
NZ_CP014274.1\|WP_062171040.1\|4365766_4367203_+\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0
NZ_CP014274.1\|WP_062171043.1\|4370008_4370581_+\|superoxide-dismutase-family-protein	gnl\|CDD\|376292	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC). superoxide dismutases (SODs) catalyze the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold.	4.61317e-44
NZ_CP014274.1\|WP_062171041.1\|4367406_4369890_+\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	5.40864e-66
NZ_CP014274.1\|WP_062171037.1\|4364718_4365774_+\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	8.99795e-109

>NZ_CP014274.1|WP_062171032.1|4361824_4363240_+|ammonium-transporter
MRTEFFTGLKARLGGLCLSFILGAMMLGMFSSSAWAQDTQAQPAATEVAAATTQAAAAPAAAAAATFDKGDVAWMLTATLLVLMMVVPGLALFYGGLVRAKNVLSVLSQVLVVFSLVLILWVAYGYSAVFSTGNQFFGSFTEFAFLKGFTPDSVGNTPIAGLPDFLFVAFQSTFAGITTALIVGAFAERIKFRAVLLFSALWFTLSYIPMAHIVWGGGYLGEMGAIDFAGGTVVHINAGVAGLVAAWFVGKRLGYGQTALKPHNLPLTWIGAMLLWVGWFGFNAGSAAAADTVASLAFINTVLATAAAVLGWTLVEAITKGHPSALGAASGAVAGLVGVTPACGTVGPLGAIVIGFVTGIVCVWGVTGLKRLLKADDTADVFGVHGVGGIVGAILTGVFSAQSLGGTKVDLDIGHQVWVQVVSVGFTVLWSAAVTAAVLLVVRALVGLRVSEEAERTGLDVTTHGESAYEA
>NZ_CP014274.1|WP_057627937.1|4361397_4361736_+|P-II-family-nitrogen-regulator
MKLISAIIRPFKLDEVREALGAAGVSGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKIRIETAVTDDNVEAVIEALQGAAGTGKIGDGKIFVTALEQVVRIRTGETGADAL
>NZ_CP014274.1|WP_062171030.1|4359623_4361033_+|type-I-glutamate--ammonia-ligase
MSLENVEKLIKDNQIEFIDLRFVDMRGIEQHVTFPASIIEPSLFEEGKMFDGSSIAGWKGIAESDMVLMPDADSAYIDPFYADPTLVLTCDVLDPATMQGYGRCPRGIAKRAESYLKSSGIADLAFFGPEPEFFIFDSVQFANDMGNSFYKINSEEGSWNTGKSYDGTNTGYRPAVKGGYFPVPPTDSLHDIRAEMCKVLEKVGIEVEVHHHEVANAGQCEIGAKFNTLVTKADELQRMKHVIKNVAHRNGKTVTFMPKPLVGDNGSGMHVHQSLAKGGNNLFSGDGYGGLSQMALWYIGGIFKHARAINAFANSGTNSYKRLVPGFEAPVMLAYSARNRSASCRIPWVSNPKARRIEMRFPDPIQSGYLTFTALMMAGLDGIKNQIDPGAPSDKDLYDLPPEEEKLIPQVCSSLDQALEALDKDREFLKAGGVMSDDFIDAYIALKMKEVTAFRAATHPLEYQLYYAS
>NZ_CP014274.1|WP_062171029.1|4358615_4359410_-|undecaprenyl-diphosphate-phosphatase
MSDLLSALLLGILEGLTEFLPISSTGHLLIAQHWLGARSDFFNIVIQAGAILAVVLAFRQRLWTLATGLNQAENRDYVMKLGVAFLVTAIVGLPVRLAGWELPETVTPVAWALVIGGVWMLLAERFAGRLPDSTTITWKVAVAVGLAQVVAGVFPGSSRSAAAIFVAMLLGLTRRAAAAEFVFLVGIPTMFAASGYALLEMAKKGQLGSENWTDVSVAFVAAAITGFIVVKWLLSYIKRRPFTGFALYRIALGFGLLLFLPAGN
>NZ_CP014274.1|WP_062171027.1|4357722_4358532_-|META-and-DUF4377-domain-containing-protein
MKRILLLALPIALMTACSNPPASTKSETTAAPSTSTAAPAANIDAAQLGANHWLLDNAVDSAGKRVDGLFVNADKPLTLDFKDGRLSVSNACNNLGGAYTLEGNTLTVGNMMSTNKACQGPLMALDGLASERLQGKLTVQALDASAMRLVAANGDVLSFRAEPTAETRYGGAGETVFMEVDAQAKPCPHPLMKDATCLQVREVKYNEQGLEQGKRGAYENFYGNIEGYKHEPGVRNVLRLKRYQIKNPPADAPSQAYVLDMVVMSETVK
>NZ_CP014274.1|WP_062171025.1|4356853_4357465_+|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MKLDSQSFHNGQPLRAEFAAGDANGFAGNRNPQLSWRDVPAGTRSFALICVDPDVPTVPELVGRDDVSIPLDQPRADFVHWVMVDVPAELREIAAGSCSDGFIAHGKTQPAGPAGARQGINDYTGWFAGNAQMAGTYYGYDGPYPPFNDERLHRYFFRLFAVDVERLPVEGAFTAADVYRAMQGHVLAEAAVHGTYTLNPKLA
>NZ_CP014274.1|WP_062171022.1|4354770_4356840_+|tetratricopeptide-repeat-protein
MQDKIIEALRRNATDEAVSLAQAWVGAEPQQAQAHRWLALSLQQQEQLEQAQASLEVALGLAPDDAALHLQHAGLLLALRQIDAAGQALDRSTSLNPNEFSAYLMQAHLALGRDDIDEADRLSRMAARVDPDSPELGTIEGMVALRRGDADRALAILSAAATKLPGDVRVLYALGFAYLGKDMLAFAEQAFRRVIELNPGNHALRGLVVQLALRQGHLDRAAEMMREVLATAQGDTPGLRRLAGELELASDQPLQALEHLRPLLQQVPGDRAALQMLLMAWQRLGREEEARSELDAAVQAHTQHHDLWMARLAVAPVGSEEAVDVVERWLAAMPEHLPALEARMRLHDMNDQAEEAEAVAHHIIALEPGRVSGEQRIVEALLQREPAAAIAHVQRLLDNAPEPARLAVRSWLGATQDRAGDHAAAVATWLQMHEEMAPNRLPLPQQARAPAEWPAMGEVAADNPVRPMFLWGAPGSGVERVATVMAAGSRVLRGDRFGPNPPNDAFQNFLTLQRLATDALTPEQLVQQWRDALPARGIEDGNVIDWLLWWDNALLWALRPQLPEGRLVIALRDPRDMLVEWLALGAPAPLAVTSSNEAAQWLARALAQVALLHEQDLYTHLILRTDDAVNDPAAMGALLEQAFGLRFPPVRSLGQGTIDAGHWRKYAQVLASEFALLTPVAVRLGYPEA
>NZ_CP014274.1|WP_082746664.1|4353723_4354713_+|alpha/beta-fold-hydrolase
MLSACNYQPPRWLRNPHLQSMLASSRVRLRRGQQLLAGSGALTQELILDGGDGVRLQAWHSRLPGTTPKALALLLHGWEGSAESSYMRMTAARLLEQGFEVVRLNFRDHGNTHHLNPGIFHSCRIDEVVNAAADVAQRFAGLPMVAAGYSLGGNFVLRLALHAPAAGVPLLHVASVCPVLDPAITMDSIERGPAMYDWYFRRKWTGSLRRKRALFPELADWDDSVLKLDIRALTGWLVDHHTEFGSLQEYFDGYSIAGNKLAALQVPADILMAADDPVIPFTTFDHWQLPASAHLEIARWGGHCGFIENLRGDGFSERWVAQHLAAAVG
>NZ_CP014274.1|WP_062171020.1|4352877_4353669_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MTSPRPARQGGVARVFRYLYRAPLLLVHIVLFLPLILLLMTQPWGRMGPANNPLEERVVRWWSGGLMWIFGFRLQRYGQPLPGAVLFVANHVGWVDISVIHSQKMVGFVAKREIAGWPVVGWVASRGHTIFHQRGNTESLGGVMEEMVKRLQEQRPVAVFPEGRTRGGHDVGPFHARIFQAAVEAGVPVQPIALRYGVRGDAQTTVAFAPGESFFGNFLRLLGEPARRGEVHFLEPIAVQDLEGRRRIAETSRARIVAVMEGP
>NZ_CP014274.1|WP_156456017.1|4350094_4352632_-|EAL-domain-containing-protein
MLHLFSAALEQIGNGVILFDDANTILYVNHAMENISGWSRAELQGKNLGTLAPASMRERYNTRLYPGASNRVQELAADPHDIQLVRKDGVACWISVTLSQIADNGRNIHLALVNDVTARRLAQARERLLSLGFDETQSAVLITDADGRIVHLNKGFRRLFGFLDSEAMGQYVPALLSPHDYSPEQIANYLSRLLAGQPIRGDERLYRKNGQPLWCSVSTNPIFDDYGTLVNLVIVLMDITRTKVHEVLQHKMLDAMVREVPTAEVMQMMCLEVEKIAPQVLCSVLRVEDGRLRHLAGPSLPEAYIRLVDGVPVGPKTGTCGTAAYSGQTVLSRDIATDPNWEGLSHLALQHGLAACWSTPIKANDGRVLGTFAFYCRQPYDPDEFHYRLVEVIVHLCALALEREEARNRIRRLAFYDDLTGLPNRSLLHAQADQAITAASHQGQTLAVMFIDLDRFKQINDSFGHPGGDELLRTVARRLQEETGPMDIVGRLSGDEFVVVLNRCDMPTASERSERILRTLGLPLPLGDMEIRPSASIGISIFPHDGNEMDSLLHHADVAMYQAKHNGRNRVRFYSSEMDECAQERMALEAALREALEQGQLQLHYQPQIDIHSGRLHSVEALARWQHPRLGSVPPIRFIPLAEEAGLIGDLGQWALGEACRQLARWRRDGLQVPSVSVNLSPTNFHSAALPEWISQILQQESLCASDLTLEITEDVLLDGDPITLQTLHQVHALGVRLSMDDFGTGYSSLSYLRQLPISELKLDRSFVHGIEGDKVASALTQAIAHIGQSLQLKVVAEGVESVEQLRLLGAQGYQIAQGFHFTPALPAPALALWVREHLPVAVPV
>NZ_CP014274.1|WP_062171035.1|4363943_4364690_+|N-acetylmuramoyl-L-alanine-amidase
MPDMKTKLLLPLALLASLTACTSTPERNPLAKWVPSPNYNERQPVVIVLHHTEQGSVQESLDTLRTANSGGQVSSHYLVGRDGDLYQLVADGERAWHAGGGRWGGFSDLNSTSIGIEIDNNGSSPFTQPQIATLLRLLEDLCTRYNIPRSQIIGHADLAPTRKADPSRYFPWQQLAEAGFGLWPDPKHGPAPAGFDSWMAMQAFGYALDDRAAAARAFHRRFRGSDTLPAELDVEDARILYSLLQQKQ
>NZ_CP014274.1|WP_062171037.1|4364718_4365774_+|PAS-domain-containing-sensor-histidine-kinase
MTDPDFSPSPDLMATPLVWSDVDGRIQGANPAFCRWLGVSVRRLLGQPLVSLEAQGEALAQRLALPVTDMTRLPRLTLALPGEAPRFADGWLSAVEQGGWLLEAHPVDEFQGADPAQVLPGAFSAALKGLAHELRNPLAGLKGAAQLLARRASGRDADERELIELIGAEIERLNTLLEQLLSPAPQRPHAPLNIHAALERVLRLVENEAGWSVRLLRDYDPSIPEFAGDADRLTQALLNLVRNAIQAGATSVTLRTRVEHGLRIAEQPYALALRLEVADDGRGVPEELAEHLFLPLVSGRAEGTGLGLALAQQVAREHRGTLSYRSRPGHTVFTVLLPLPAAEDAPEVGDV
>NZ_CP014274.1|WP_062171040.1|4365766_4367203_+|nitrogen-regulation-protein-NR(I)
MYKPTAATVWVVDDDRSVRFVLSTALRDAGYSVEGFDSAAAALAALAQQPPPDLLFTDVRMPGDDGLVLLDKLKAAHPQLPVIVMSAYTDVASTAGAFRGGAHEFLSKPFDLDDAVELARRALPEVEEQPAPVAVLAPTQKEEGPPQLIGDTPAMRALFRAIGRLAQAPLSVLINGETGTGKELVANALHRESPRAKGPFVALNTAAIPAELLESELFGHEAGAFTGASKRHIGRFEQADGGTLFLDEIGDMPLALQTRLLRVLAEGEFFRVGGRELIRVDVRVVAATHQDLETLVEQGRFRADLLHRLDMVRLLLPPLRERLGDVPQLAENFLVNAARRLDMPAKRLSVAAVKALREHSWPGNVRELENVCWRLAALAVADTVSAEDVKAALNRGGRATHATPPLAPEHWDRALAAWARQRLAEGASGLHAEARERLDTALLEAALDFTDGHRADAAARLGLGRNTITRKLGPGRRR
>NZ_CP014274.1|WP_062171041.1|4367406_4369890_+|protein-kinase
MLSADAWNRLVELFGQATDLPENERIRFIHAQTADDPVLQRELLALIAADAATDATRRLREPMQRAAELLLQAAEAEVIAGTRFGPWSVERMIGAGGMGRVYLAQRADGAYTREVALKLVNTPALSERRYAHFAYECRLLAHMQHPAIAQIHDAGTDPEGRAYLVMEYIQGQPITAWCDQHRASLRERVALLARVAEGVQHAHQKGVIHRDLKPGNVLVGSVDGQPAPKIIDFGIAIEAEAAQRGSSGGTPGYMSPEQSQPDSDVDARSDVYSLGAILYELACGSCVDADALQSPSQHLQGLAAQRQEQLASARASTPARLRRELRDGLDAIALKALRPARGERYASVSLLLEDLRRWLCHYPPQAAGRTRLLALRKFARRNRLMVGAAAVVGLVLLAGLAASSWALHEARQEAARAKVSSRFLASVLDSMDPAMADGLDRSLMLRVLEDASRRAPHDLAAHPDILADMQLIIAANQIKLEDYPRALAHLQSVRALADQHPGLQQQRLRALQILGDMHVVNGKLAQAQAVLQEGIAEADAGGPGHLRLASDLRSRLAWVWFQQGRAQQALQLAKQALDALDRMGPADDQQRLDAAKRYANMLSTSGDYPRSIALMEDVVQRRTRRNGPDHALTLVARRDLVTTRLRMRDFAGAEPELRQLLAAYERMYGADNAYPMGVRGMLGSALREQGKVAEAGPHYRASMEWCAKRYGAESLSTLVARHNHANWLLAAGQAGQSRDEQKALLAIADRSLGRANHVTAEVLRGLAEAELALGERGSARLHASAALQAMRQVYGDQHAGALRDARATLQKVEAAGTGTVAAGAGAD
>NZ_CP014274.1|WP_062171043.1|4370008_4370581_+|superoxide-dismutase-family-protein
MRQCLFLLTATSTLLLAACGSGPGTKAEPPAPPVATVSTARMAEANLAPASASLVSGRLALVPETGGVHITGVIGGLPRGQQAAFHVHEKGDCSAMDASSAGGHFNPAMQQHGRAGAGAHHAGDMDNLQANAEGVVHVDVHLRGVTLGGGAANDVAGRALVVHATADDYRSQPAGNAGARVACAVIRVVR
>NZ_CP014274.1|WP_062171045.1|4370626_4371241_+|superoxide-dismutase-family-protein
MRLIHTSLFLASALALTACNKGAEPDAAPADSVPPPAATTPATDPAAPPEMAKPIATAQLQPTKDSTVAGTISFSLVDGQLRASGDISGLKPDSEHGFHIHEKGDCSAPDGSSAGGHFNPGSSEHGSISTAMHHGGDMPNIKADAQGNAHIDGPVASNVNVGVGDGFDIVGRGLIVHADPDDYKTQPTGNAGARLACAVITKVP
>NZ_CP014274.1|WP_082746665.1|4371634_4372522_-|hypothetical-protein
MSNSNPDVNALGVVALELAGGEQPGKAALGSEQAGELVALIGRDLTKLVPQVSELDLVFAAAHFDPAEVLRPGLPIHRRLEELQMRAPGRNHGARLLAFGADANGEIPLPLQADPALSGGALRLLPFVLAGGEAAVRSDVRDALEEVLLANGMAQPDTALLAQNSFAAQIEHARYFTVNDLAAMMAMQYDNQGLADLWPLLETAMFAPNEEQWLDMPPEPLLRYVGGEVRMALFDPAGWCAHYAQDKSDCERLQRVYEQYMMRQRQMAAVLEAHGIDVLYVHVNAGQDAKALLAH
>NZ_CP014274.1|WP_156455918.1|4372612_4373908_+|acetyl-CoA-C-acetyltransferase
MSGTRMPSARPVAILGGVRIPFCRQNTAYSDVGNLGMSVRTLGALVERFGLHGQQLGEVAMGAVIKHPSDWNLGREAALSSGLSPLTPGITLQRACGTSLDSIITVANKIALGQIESGIGGGSDTTSDVPIVYGKKLRARLLAANRAKSTGDKIRTLLKGFKFSELKPEFPGVAEPRTGKSMGDHCEDMAKEWNISRDSQDEWAVSSHRKLAAAYERGFFNDLIAPFRGVERDNILRPDTSLEKLATLKPAFDKSSGRGTLTAANSTPLTDGAAAVLLASEEWARAHGHEPLAYLRDSQVAAVDFVHGEGLLMAPTIAVPEMLKRNGLTLQDFDIYEIHEAFAAQVLCTLRAWESEEYCRNRLGLDAALGRIDPDKINPLGSSLATGHPFAATGARIIGTVAKELAARGGGRALVSICTAGGMGVVAIVER
>NZ_CP014274.1|WP_062171051.1|4374051_4374987_+|hypothetical-protein
MKRIAIGLAVLLSAVAAPAAAMTFMKVEHVCPIGGERFSAQEMGSGTAFGHFLDGRLHGAIQSPWPLVSCPGNGFVIYKDDFSAEEIKRLSAVVASDEYQRMRGTETSYWLLAHLFEAVGAPARDRAGVLQSATWQASPEQYPRYVQAASAAVAQQCPDARAAAERDAPWLHCQMLLGEWERRLSQFDAARARFERLQPLPEKLVVGPESESTRRQYAAEIAQQLQLIAANNAMSAMAVDANAPLDNTSTERLPAVVGDMSASAAQAAADTAVDAADAAAAAADAVHAAEMAVDAEAGEAASEVAPDQRRR
>NZ_CP014274.1|WP_065868095.1|4375129_4375687_+|hypothetical-protein
MQSMDEFNPYAAPEAVPPPLTNSASAEATCWRDDDQLLALPHSDLPRYCVKCGRPALEYRKRSFYWHSPWLYLLILLHFLVYLIAALAVRKQAVHHVGLCSEHRKRRLNFILMAWSSLVPLFGCFLFDSGAVIGLGILAFLVMLLWGLIGMQILKPKKIDVELAVYRGVSTAFLARLPRYPYRRD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014274_2	2.2\|335052\|23\|NZ_CP014274\|PILER-CR	335052-335074	23	NZ_CP010860	Marinovum algicola DG 898 plasmid pMaD5, complete sequence	12303-12325	1	0.957
NZ_CP014274_2	2.2\|335052\|23\|NZ_CP014274\|PILER-CR	335052-335074	23	NZ_CP028969	Aminobacter sp. MSH1 plasmid pUSP1, complete sequence	297371-297393	2	0.913
NZ_CP014274_2	2.2\|335052\|23\|NZ_CP014274\|PILER-CR	335052-335074	23	NZ_CP026266	Aminobacter sp. MSH1 plasmid pAM01, complete sequence	294558-294580	2	0.913
NZ_CP014274_2	2.2\|335052\|23\|NZ_CP014274\|PILER-CR	335052-335074	23	NC_015583	Novosphingobium sp. PP1Y plasmid Mpl, complete sequence	1013273-1013295	3	0.87
NZ_CP014274_9	9.1\|1639120\|28\|NZ_CP014274\|CRISPRCasFinder	1639120-1639147	28	MK814750	Gordonia phage Ewald, complete genome	1272-1299	4	0.857
NZ_CP014274_9	9.1\|1639120\|28\|NZ_CP014274\|CRISPRCasFinder	1639120-1639147	28	NC_031004	Gordonia phage Nyceirae, complete genome	1398-1425	4	0.857
NZ_CP014274_7	7.1\|1269592\|34\|NZ_CP014274\|CRISPRCasFinder	1269592-1269625	34	MT648818	Acinetobacter phage FG02, partial genome	37515-37548	5	0.853
NZ_CP014274_9	9.1\|1639120\|28\|NZ_CP014274\|CRISPRCasFinder	1639120-1639147	28	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	357243-357270	6	0.786
NZ_CP014274_15	15.1\|2458137\|28\|NZ_CP014274\|CRISPRCasFinder	2458137-2458164	28	NZ_CP044964	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014881 plasmid pPNCS014881.3, complete sequence	2497-2524	6	0.786
NZ_CP014274_15	15.1\|2458137\|28\|NZ_CP014274\|CRISPRCasFinder	2458137-2458164	28	NZ_CP039608	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014873 plasmid p14-7355.1, complete sequence	1635-1662	6	0.786
NZ_CP014274_15	15.1\|2458137\|28\|NZ_CP014274\|CRISPRCasFinder	2458137-2458164	28	NC_014354	Salmonella enterica subsp. enterica serovar Enteritidis plasmid pVCM04, complete sequence	3135-3162	6	0.786
NZ_CP014274_19	19.1\|3814911\|28\|NZ_CP014274\|CRISPRCasFinder	3814911-3814938	28	NZ_CP020811	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed2, complete sequence	102303-102330	6	0.786
NZ_CP014274_2	2.1\|334991\|27\|NZ_CP014274\|PILER-CR	334991-335017	27	NZ_LR134465	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence	204696-204722	7	0.741
NZ_CP014274_9	9.1\|1639120\|28\|NZ_CP014274\|CRISPRCasFinder	1639120-1639147	28	MT316461	Streptomyces phage Galactica, complete genome	43427-43454	7	0.75
NZ_CP014274_9	9.1\|1639120\|28\|NZ_CP014274\|CRISPRCasFinder	1639120-1639147	28	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	397277-397304	7	0.75
NZ_CP014274_7	7.1\|1269592\|34\|NZ_CP014274\|CRISPRCasFinder	1269592-1269625	34	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	518136-518169	10	0.706

1. spacer 2.2|335052|23|NZ_CP014274|PILER-CR matches to NZ_CP010860 (Marinovum algicola DG 898 plasmid pMaD5, complete sequence) position: , mismatch: 1, identity: 0.957

gcggcaatgcccgcgtcggcacc	CRISPR spacer
gcggcaatgccagcgtcggcacc	Protospacer
*********** ***********

2. spacer 2.2|335052|23|NZ_CP014274|PILER-CR matches to NZ_CP028969 (Aminobacter sp. MSH1 plasmid pUSP1, complete sequence) position: , mismatch: 2, identity: 0.913

gcggcaatgcccgcgtcggcacc	CRISPR spacer
tcggcaatgccggcgtcggcacc	Protospacer
 ********** ***********

3. spacer 2.2|335052|23|NZ_CP014274|PILER-CR matches to NZ_CP026266 (Aminobacter sp. MSH1 plasmid pAM01, complete sequence) position: , mismatch: 2, identity: 0.913

gcggcaatgcccgcgtcggcacc	CRISPR spacer
tcggcaatgccggcgtcggcacc	Protospacer
 ********** ***********

4. spacer 2.2|335052|23|NZ_CP014274|PILER-CR matches to NC_015583 (Novosphingobium sp. PP1Y plasmid Mpl, complete sequence) position: , mismatch: 3, identity: 0.87

gcggcaatgcccgcgtcggcacc	CRISPR spacer
gcggcgatgcccgcgtcggcaaa	Protospacer
*****.***************

5. spacer 9.1|1639120|28|NZ_CP014274|CRISPRCasFinder matches to MK814750 (Gordonia phage Ewald, complete genome) position: , mismatch: 4, identity: 0.857

cagcatcgtgcagtgggcgcgcacccac	CRISPR spacer
aggcaccgtgcagtgcgcgcgcacccac	Protospacer
 .***.********* ************

6. spacer 9.1|1639120|28|NZ_CP014274|CRISPRCasFinder matches to NC_031004 (Gordonia phage Nyceirae, complete genome) position: , mismatch: 4, identity: 0.857

cagcatcgtgcagtgggcgcgcacccac	CRISPR spacer
gggcaccgtgcagtgcgcgcgcacccac	Protospacer
 .***.********* ************

7. spacer 7.1|1269592|34|NZ_CP014274|CRISPRCasFinder matches to MT648818 (Acinetobacter phage FG02, partial genome) position: , mismatch: 5, identity: 0.853

agttattcccggtaaagccccagcgtaaagcccc	CRISPR spacer
agttattcccggtaaagccccagcgccaaaacgc	Protospacer
*************************. **. * *

8. spacer 9.1|1639120|28|NZ_CP014274|CRISPRCasFinder matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.786

cagcatcgtgcagtgggcgcgcacccac	CRISPR spacer
cagcatcgtgcagtggggacgcaacagg	Protospacer
***************** .**** * .

9. spacer 15.1|2458137|28|NZ_CP014274|CRISPRCasFinder matches to NZ_CP044964 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014881 plasmid pPNCS014881.3, complete sequence) position: , mismatch: 6, identity: 0.786

tgccttcggcaaagggagggagcaaccg	CRISPR spacer
aaggatcggcagagggagggagcaaccg	Protospacer
 .   ******.****************

10. spacer 15.1|2458137|28|NZ_CP014274|CRISPRCasFinder matches to NZ_CP039608 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014873 plasmid p14-7355.1, complete sequence) position: , mismatch: 6, identity: 0.786

tgccttcggcaaagggagggagcaaccg	CRISPR spacer
aaggatcggcagagggagggagcaaccg	Protospacer
 .   ******.****************

11. spacer 15.1|2458137|28|NZ_CP014274|CRISPRCasFinder matches to NC_014354 (Salmonella enterica subsp. enterica serovar Enteritidis plasmid pVCM04, complete sequence) position: , mismatch: 6, identity: 0.786

tgccttcggcaaagggagggagcaaccg	CRISPR spacer
aaggatcggcagagggagggagcaaccg	Protospacer
 .   ******.****************

12. spacer 19.1|3814911|28|NZ_CP014274|CRISPRCasFinder matches to NZ_CP020811 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.786

gcggcgatattgcgatattgccggtgag	CRISPR spacer
tcgccgatattgcgatcttgccggcgca	Protospacer
 ** ************ *******.* .

13. spacer 2.1|334991|27|NZ_CP014274|PILER-CR matches to NZ_LR134465 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence) position: , mismatch: 7, identity: 0.741

aatatcggctcgctgtacgtgttgtcg	CRISPR spacer
tgcatcggctcgctgtacatgttgagc	Protospacer
 ..***************.*****

14. spacer 9.1|1639120|28|NZ_CP014274|CRISPRCasFinder matches to MT316461 (Streptomyces phage Galactica, complete genome) position: , mismatch: 7, identity: 0.75

cagcatcgtgcagtgggcgcgcacccac	CRISPR spacer
cagcatcgtgcagagggcgcgctgggct	Protospacer
************* ********     .

15. spacer 9.1|1639120|28|NZ_CP014274|CRISPRCasFinder matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 7, identity: 0.75

cagcatcgtgcagtgggcgcgcacccac	CRISPR spacer
cagcatcgtgccgggggcgcgcaaggcg	Protospacer
*********** * *********

16. spacer 7.1|1269592|34|NZ_CP014274|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.706

agttattcccggtaaagccccagcgtaaagcccc	CRISPR spacer
gtgccctccccgtaaagccccagcgaaaagcgca	Protospacer
.  . .**** ************** ***** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1916812 : 1923749

uncultured_Caudovirales_phage(83.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062167456.1\|1916812_1918291_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	4.3e-167	67.1
WP_054658164.1\|1918558_1918978_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	2.5e-43	63.7
WP_057506595.1\|1918974_1919715_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.3e-84	68.9
WP_054658162.1\|1919755_1920070_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_057506594.1\|1920096_1920588_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	1.6e-25	40.3
WP_054658160.1\|1920608_1921667_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_054658158.1\|1921670_1922654_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.7e-63	44.1
WP_062171532.1\|1922678_1923749_+	FAD-dependent oxidoreductase	A0A2H4J2Q2	uncultured_Caudovirales_phage	1.3e-91	57.6

DBSCAN-SWA_2

1949443 : 1998620

Xanthomonas_phage(25.0%)

integrase,protease,tRNA,transposase

attL 1966244:1966259|attR 1978763:1978778

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082746536.1\|1949443_1950715_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_062167475.1\|1954442_1955708_+	ferredoxin reductase family protein	NA	NA	NA	NA
WP_156455959.1\|1957226_1958747_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_062167478.1\|1959071_1959794_-	VIT family protein	NA	NA	NA	NA
WP_136007218.1\|1961181_1961454_-	hypothetical protein	NA	NA	NA	NA
WP_062171537.1\|1961706_1963179_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_016448223.1\|1963493_1964423_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_065868187.1\|1965124_1965751_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_062167482.1\|1965836_1967117_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
1966244:1966259	attL	NA	NA	NA	NA
WP_062167484.1\|1967117_1967486_-	dihydroneopterin aldolase	NA	NA	NA	NA
WP_082746537.1\|1967552_1968440_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.5e-77	54.4
WP_082746538.1\|1970799_1972140_-	transcriptional regulator	NA	NA	NA	NA
WP_062167488.1\|1972383_1973472_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_062167490.1\|1973576_1974467_+	DNA-binding protein	NA	NA	NA	NA
WP_062167492.1\|1975228_1975600_-	hypothetical protein	NA	NA	NA	NA
WP_156455794.1\|1975733_1975871_+	hypothetical protein	NA	NA	NA	NA
WP_156455795.1\|1976092_1976290_+	hypothetical protein	NA	NA	NA	NA
WP_156455796.1\|1976503_1977781_+	replication protein	S0F3I3	Stenotrophomonas_phage	1.4e-68	44.6
WP_062167499.1\|1977794_1978085_+	single-stranded DNA-binding protein	B1NI78	Stenotrophomonas_phage	2.2e-22	60.7
WP_062167501.1\|1978288_1978546_+	hypothetical protein	NA	NA	NA	NA
WP_065868184.1\|1978658_1980164_+	hypothetical protein	A0A077JDC5	Xanthomonas_phage	6.8e-67	44.1
1978763:1978778	attR	NA	NA	NA	NA
WP_062167505.1\|1980165_1980480_+	DUF2523 domain-containing protein	A0A077JCZ2	Xanthomonas_phage	1.7e-25	57.6
WP_062167507.1\|1980476_1981640_+	zonular occludens toxin	A0A077JGB2	Xanthomonas_phage	6.5e-126	62.0
WP_156455797.1\|1981641_1982046_-	hypothetical protein	NA	NA	NA	NA
WP_062167511.1\|1983200_1983938_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_062167513.1\|1983934_1984942_-	N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase	NA	NA	NA	NA
WP_062167515.1\|1984973_1986014_-	glucokinase	NA	NA	NA	NA
WP_062167517.1\|1986103_1986490_-	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	9.6e-26	54.2
WP_082746541.1\|1986527_1987823_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	5.4e-73	36.5
WP_062167520.1\|1987949_1988588_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_062167522.1\|1988681_1991048_-	DNA translocase FtsK	G1D482	Mycobacterium_virus	3.0e-85	45.9
WP_062167524.1\|1991336_1992305_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	6.9e-65	42.9
WP_156455798.1\|1992337_1993189_+	hypothetical protein	NA	NA	NA	NA
WP_062167529.1\|1993221_1994355_+	N-acetyltransferase	NA	NA	NA	NA
WP_062167531.1\|1994351_1995086_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_005409596.1\|1995184_1995403_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_062167532.1\|1995709_1997989_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.2e-171	43.8
WP_062167534.1\|1998299_1998620_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.7e-12	46.2

DBSCAN-SWA_3

2070850 : 2138701

uncultured_Caudovirales_phage(22.22%)

tRNA,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_156455802.1\|2070850_2071408_-\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYZ2	Pandoravirus	1.6e-05	38.2
WP_156455803.1\|2071575_2072241_-	hypothetical protein	NA	NA	NA	NA
WP_062167636.1\|2072412_2073975_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	6.0e-18	36.8
WP_062167637.1\|2074335_2075328_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_062167638.1\|2075825_2077103_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.1e-97	53.9
WP_062167639.1\|2077216_2077867_+	energy transducer TonB	NA	NA	NA	NA
WP_082746546.1\|2077975_2078476_+	TonB family protein	NA	NA	NA	NA
WP_062167641.1\|2078459_2079773_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_062167643.1\|2079914_2081153_-	prephenate dehydratase	NA	NA	NA	NA
WP_062167644.1\|2081203_2082289_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	7.0e-82	45.9
WP_062167645.1\|2082430_2083243_-	FHA domain-containing protein	NA	NA	NA	NA
WP_062167647.1\|2083360_2083636_+	polyhydroxyalkanoic acid synthase	NA	NA	NA	NA
WP_062167648.1\|2083715_2084180_+	phasin family protein	NA	NA	NA	NA
WP_062167650.1\|2084404_2085223_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_062171555.1\|2085320_2086325_+	hypothetical protein	NA	NA	NA	NA
WP_062167651.1\|2086416_2087145_-	histidine utilization repressor	NA	NA	NA	NA
WP_156455960.1\|2087185_2088574_-	formimidoylglutamate deiminase	NA	NA	NA	NA
WP_062167652.1\|2088616_2089822_+	imidazolonepropionase	NA	NA	NA	NA
WP_062167653.1\|2089844_2091392_+	histidine ammonia-lyase	A0A1V0S940	Catovirus	3.4e-82	40.9
WP_156455804.1\|2091473_2092037_-	hypothetical protein	NA	NA	NA	NA
WP_062167656.1\|2093004_2094672_+	urocanate hydratase	NA	NA	NA	NA
WP_082746712.1\|2094765_2095182_-	DoxX family protein	NA	NA	NA	NA
WP_156455805.1\|2095415_2095697_+	hypothetical protein	NA	NA	NA	NA
WP_062167657.1\|2096220_2097282_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_062167658.1\|2097318_2098110_-	OmpA family protein	NA	NA	NA	NA
WP_062167659.1\|2098112_2099096_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_082746713.1\|2099092_2102764_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_065868177.1\|2102827_2104216_-	hypothetical protein	NA	NA	NA	NA
WP_082746547.1\|2104295_2104556_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_062167663.1\|2104657_2105542_-	M15 family metallopeptidase	A0A2H4J4U2	uncultured_Caudovirales_phage	9.3e-08	31.5
WP_062167664.1\|2105998_2106484_+	hypothetical protein	NA	NA	NA	NA
WP_082746548.1\|2107680_2107950_-\|transposase	transposase	NA	NA	NA	NA
WP_156455806.1\|2108155_2108818_-	hypothetical protein	NA	NA	NA	NA
WP_062167665.1\|2109293_2110388_-	hypothetical protein	NA	NA	NA	NA
WP_156455807.1\|2110533_2111502_-	hypothetical protein	NA	NA	NA	NA
WP_156455808.1\|2111554_2115055_-	hypothetical protein	NA	NA	NA	NA
WP_156455809.1\|2115047_2116019_-	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_062167670.1\|2116015_2118742_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.0e-37	25.6
WP_062167671.1\|2118867_2119218_-	hypothetical protein	NA	NA	NA	NA
WP_062167672.1\|2119239_2121990_-	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	7.0e-86	30.2
WP_062167674.1\|2122056_2123142_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_062167675.1\|2123105_2124941_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_057628615.1\|2124940_2125432_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_057628616.1\|2125552_2126050_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_062167676.1\|2126196_2127687_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_057628618.1\|2127690_2128191_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_065868174.1\|2128223_2128853_-	hypothetical protein	NA	NA	NA	NA
WP_062171562.1\|2129093_2129705_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_062167677.1\|2129925_2131260_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_062167678.1\|2131259_2132051_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_156455810.1\|2136647_2137292_+	hypothetical protein	NA	NA	NA	NA
WP_156455811.1\|2137593_2138701_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.6e-41	37.4

DBSCAN-SWA_4

3036162 : 3050040

Bacillus_virus(12.5%)

integrase

attL 3027543:3027559|attR 3050389:3050405

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3027543:3027559	attL	NA	NA	NA	NA
WP_049440237.1\|3036162_3037152_-	endonuclease	A6XMH8	Bacillus_virus	7.1e-49	36.2
WP_065868228.1\|3037274_3037763_-	JAB domain-containing protein	NA	NA	NA	NA
WP_062168911.1\|3037783_3038740_-	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	3.8e-63	44.4
WP_065868137.1\|3039062_3039812_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_062168913.1\|3039814_3043126_-	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	2.4e-56	27.5
WP_062168915.1\|3043122_3044352_-	restriction endonuclease subunit S	A0A1V0SLK8	Klosneuvirus	1.3e-07	24.0
WP_082746592.1\|3044341_3045460_-	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	8.9e-64	44.1
WP_049440247.1\|3045491_3047018_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.3e-89	39.4
WP_065868136.1\|3047040_3047646_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_049440251.1\|3047762_3048056_-\|integrase	tyrosine-type recombinase/integrase	A7X7X0	Dichelobacter_phage	8.3e-22	56.5
WP_062168919.1\|3048556_3049261_+	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_062168922.1\|3049311_3050040_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.4e-38	40.4
3050389:3050405	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3464135 : 3474055

Escherichia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062169465.1\|3464135_3465482_+	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	2.0e-30	27.3
WP_062169467.1\|3465490_3466894_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	3.5e-49	30.1
WP_062169469.1\|3466994_3467894_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.8e-28	38.2
WP_062169471.1\|3467890_3468448_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.1e-46	52.2
WP_062169473.1\|3468444_3469332_-	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	2.4e-96	58.9
WP_062169475.1\|3469383_3470439_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.0e-87	48.9
WP_062169477.1\|3470685_3471432_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_062169479.1\|3471431_3472367_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_062171800.1\|3472951_3474055_+	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2P1ELT3	Moumouvirus	1.9e-26	34.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014274

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection