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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013928 Alteromonas mediterranea strain UM8 chromosome, complete genome 1 crisprs RT,cas3,DEDDh,WYL,csa3,Cas9_archaeal,PD-DExK,DinG,PrimPol 0 5 5 0
NZ_CP013929 Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence 0 crisprs WYL 0 0 0 0

Results visualization

1. NZ_CP013928
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013928_1 4113943-4114275 Orphan NA
6 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP013928_1 1.2|4114018|21|NZ_CP013928|CRT 4114018-4114038 21 NZ_CP032685 Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence 854391-854411 1 0.952
NZ_CP013928_1 1.2|4114018|21|NZ_CP013928|CRT 4114018-4114038 21 NZ_CP032690 Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence 853911-853931 1 0.952
NZ_CP013928_1 1.2|4114018|21|NZ_CP013928|CRT 4114018-4114038 21 CP006880 Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence 1590997-1591017 1 0.952
NZ_CP013928_1 1.4|4114114|33|NZ_CP013928|CRT 4114114-4114146 33 NZ_CP038855 Pantoea vagans strain LMG 24199 plasmid unnamed2, complete sequence 75868-75900 5 0.848
NZ_CP013928_1 1.5|4114168|33|NZ_CP013928|CRT 4114168-4114200 33 NZ_CP038855 Pantoea vagans strain LMG 24199 plasmid unnamed2, complete sequence 75868-75900 5 0.848
NZ_CP013928_1 1.1|4113964|33|NZ_CP013928|CRT 4113964-4113996 33 EU849489 Stenotrophomonas phage S1, complete genome 17006-17038 8 0.758
NZ_CP013928_1 1.3|4114060|33|NZ_CP013928|CRT 4114060-4114092 33 EU849489 Stenotrophomonas phage S1, complete genome 17006-17038 8 0.758
NZ_CP013928_1 1.5|4114168|33|NZ_CP013928|CRT 4114168-4114200 33 EU849489 Stenotrophomonas phage S1, complete genome 17006-17038 8 0.758
NZ_CP013928_1 1.5|4114168|33|NZ_CP013928|CRT 4114168-4114200 33 NZ_CP049912 Diaphorobacter sp. HDW4A plasmid p_unnamed2, complete sequence 9023-9055 8 0.758
NZ_CP013928_1 1.4|4114114|33|NZ_CP013928|CRT 4114114-4114146 33 EU849489 Stenotrophomonas phage S1, complete genome 17006-17038 9 0.727
NZ_CP013928_1 1.4|4114114|33|NZ_CP013928|CRT 4114114-4114146 33 NZ_CP049912 Diaphorobacter sp. HDW4A plasmid p_unnamed2, complete sequence 9023-9055 9 0.727
NZ_CP013928_1 1.4|4114114|33|NZ_CP013928|CRT 4114114-4114146 33 MN693184 Marine virus AFVG_25M66, complete genome 5448-5480 9 0.727
NZ_CP013928_1 1.5|4114168|33|NZ_CP013928|CRT 4114168-4114200 33 MN694374 Marine virus AFVG_250M614, complete genome 5310-5342 9 0.727
NZ_CP013928_1 1.5|4114168|33|NZ_CP013928|CRT 4114168-4114200 33 MN693184 Marine virus AFVG_25M66, complete genome 5448-5480 9 0.727
NZ_CP013928_1 1.1|4113964|33|NZ_CP013928|CRT 4113964-4113996 33 MN693223 Marine virus AFVG_25M158, complete genome 21947-21979 10 0.697
NZ_CP013928_1 1.1|4113964|33|NZ_CP013928|CRT 4113964-4113996 33 MN693167 Marine virus AFVG_25M344, complete genome 10142-10174 10 0.697
NZ_CP013928_1 1.1|4113964|33|NZ_CP013928|CRT 4113964-4113996 33 MN693239 Marine virus AFVG_25M159, complete genome 21949-21981 10 0.697
NZ_CP013928_1 1.3|4114060|33|NZ_CP013928|CRT 4114060-4114092 33 MN693223 Marine virus AFVG_25M158, complete genome 21947-21979 10 0.697
NZ_CP013928_1 1.3|4114060|33|NZ_CP013928|CRT 4114060-4114092 33 MN693167 Marine virus AFVG_25M344, complete genome 10142-10174 10 0.697
NZ_CP013928_1 1.3|4114060|33|NZ_CP013928|CRT 4114060-4114092 33 MN693239 Marine virus AFVG_25M159, complete genome 21949-21981 10 0.697
NZ_CP013928_1 1.4|4114114|33|NZ_CP013928|CRT 4114114-4114146 33 MN694374 Marine virus AFVG_250M614, complete genome 5310-5342 10 0.697

1. spacer 1.2|4114018|21|NZ_CP013928|CRT matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 1, identity: 0.952

cgctttcgcctgtgcttcagc	CRISPR spacer
cgccttcgcctgtgcttcagc	Protospacer
***.*****************

2. spacer 1.2|4114018|21|NZ_CP013928|CRT matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 1, identity: 0.952

cgctttcgcctgtgcttcagc	CRISPR spacer
cgccttcgcctgtgcttcagc	Protospacer
***.*****************

3. spacer 1.2|4114018|21|NZ_CP013928|CRT matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 1, identity: 0.952

cgctttcgcctgtgcttcagc	CRISPR spacer
cgctttcgcctgtgcttcacc	Protospacer
******************* *

4. spacer 1.4|4114114|33|NZ_CP013928|CRT matches to NZ_CP038855 (Pantoea vagans strain LMG 24199 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.848

cgctttcgcctgtgcttcagcctctgcttttaa	CRISPR spacer
agctttcgcttttgcttcagcctctgctttaga	Protospacer
 ********.* ****************** .*

5. spacer 1.5|4114168|33|NZ_CP013928|CRT matches to NZ_CP038855 (Pantoea vagans strain LMG 24199 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.848

ggctttcgcctgtgcttcagcctctgcttttaa	CRISPR spacer
agctttcgcttttgcttcagcctctgctttaga	Protospacer
.********.* ****************** .*

6. spacer 1.1|4113964|33|NZ_CP013928|CRT matches to EU849489 (Stenotrophomonas phage S1, complete genome) position: , mismatch: 8, identity: 0.758

ggctttcgcctgtgcttcagcctctgcctttag	CRISPR spacer
ggctttcgcctgtgcttccgcctcagcgacagc	Protospacer
****************** ***** **  . . 

7. spacer 1.3|4114060|33|NZ_CP013928|CRT matches to EU849489 (Stenotrophomonas phage S1, complete genome) position: , mismatch: 8, identity: 0.758

ggctttcgcctgtgcttcagcctctgcctttag	CRISPR spacer
ggctttcgcctgtgcttccgcctcagcgacagc	Protospacer
****************** ***** **  . . 

8. spacer 1.5|4114168|33|NZ_CP013928|CRT matches to EU849489 (Stenotrophomonas phage S1, complete genome) position: , mismatch: 8, identity: 0.758

ggctttcgcctgtgcttcagcctctgcttttaa	CRISPR spacer
ggctttcgcctgtgcttccgcctcagcgacagc	Protospacer
****************** ***** **  . . 

9. spacer 1.5|4114168|33|NZ_CP013928|CRT matches to NZ_CP049912 (Diaphorobacter sp. HDW4A plasmid p_unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

ggctttcgcctgtgcttcagcctctgcttttaa	CRISPR spacer
gtgtcttgcctgtgcttccgcttctgctttttc	Protospacer
*  *.*.*********** **.*********  

10. spacer 1.4|4114114|33|NZ_CP013928|CRT matches to EU849489 (Stenotrophomonas phage S1, complete genome) position: , mismatch: 9, identity: 0.727

cgctttcgcctgtgcttcagcctctgcttttaa	CRISPR spacer
ggctttcgcctgtgcttccgcctcagcgacagc	Protospacer
 ***************** ***** **  . . 

11. spacer 1.4|4114114|33|NZ_CP013928|CRT matches to NZ_CP049912 (Diaphorobacter sp. HDW4A plasmid p_unnamed2, complete sequence) position: , mismatch: 9, identity: 0.727

cgctttcgcctgtgcttcagcctctgcttttaa	CRISPR spacer
gtgtcttgcctgtgcttccgcttctgctttttc	Protospacer
   *.*.*********** **.*********  

12. spacer 1.4|4114114|33|NZ_CP013928|CRT matches to MN693184 (Marine virus AFVG_25M66, complete genome) position: , mismatch: 9, identity: 0.727

cgctttcgcctgtgcttcagcctctgcttttaa	CRISPR spacer
agcagctacctgtgcttcatactctgcttttac	Protospacer
 **  ...***********  *********** 

13. spacer 1.5|4114168|33|NZ_CP013928|CRT matches to MN694374 (Marine virus AFVG_250M614, complete genome) position: , mismatch: 9, identity: 0.727

---ggctttcgcctgtgcttcagcctctgcttttaa	CRISPR spacer
ccgagc---agccggtgcttcagcctcggcttttcc	Protospacer
   .**    *** ************* ******  

14. spacer 1.5|4114168|33|NZ_CP013928|CRT matches to MN693184 (Marine virus AFVG_25M66, complete genome) position: , mismatch: 9, identity: 0.727

ggctttcgcctgtgcttcagcctctgcttttaa	CRISPR spacer
agcagctacctgtgcttcatactctgcttttac	Protospacer
.**  ...***********  *********** 

15. spacer 1.1|4113964|33|NZ_CP013928|CRT matches to MN693223 (Marine virus AFVG_25M158, complete genome) position: , mismatch: 10, identity: 0.697

ggctttcgcctgtgcttcagcctctgcctttag	CRISPR spacer
tttcatcacctctgcttcagcctctgccttggc	Protospacer
  .. **.*** ****************** . 

16. spacer 1.1|4113964|33|NZ_CP013928|CRT matches to MN693167 (Marine virus AFVG_25M344, complete genome) position: , mismatch: 10, identity: 0.697

ggctttcgcctgtgcttcagcctctgcctttag	CRISPR spacer
cttcatcacctctgcttcagcctctgccttggc	Protospacer
  .. **.*** ****************** . 

17. spacer 1.1|4113964|33|NZ_CP013928|CRT matches to MN693239 (Marine virus AFVG_25M159, complete genome) position: , mismatch: 10, identity: 0.697

ggctttcgcctgtgcttcagcctctgcctttag	CRISPR spacer
cttcatcacctctgcttcagcctctgccttggc	Protospacer
  .. **.*** ****************** . 

18. spacer 1.3|4114060|33|NZ_CP013928|CRT matches to MN693223 (Marine virus AFVG_25M158, complete genome) position: , mismatch: 10, identity: 0.697

ggctttcgcctgtgcttcagcctctgcctttag	CRISPR spacer
tttcatcacctctgcttcagcctctgccttggc	Protospacer
  .. **.*** ****************** . 

19. spacer 1.3|4114060|33|NZ_CP013928|CRT matches to MN693167 (Marine virus AFVG_25M344, complete genome) position: , mismatch: 10, identity: 0.697

ggctttcgcctgtgcttcagcctctgcctttag	CRISPR spacer
cttcatcacctctgcttcagcctctgccttggc	Protospacer
  .. **.*** ****************** . 

20. spacer 1.3|4114060|33|NZ_CP013928|CRT matches to MN693239 (Marine virus AFVG_25M159, complete genome) position: , mismatch: 10, identity: 0.697

ggctttcgcctgtgcttcagcctctgcctttag	CRISPR spacer
cttcatcacctctgcttcagcctctgccttggc	Protospacer
  .. **.*** ****************** . 

21. spacer 1.4|4114114|33|NZ_CP013928|CRT matches to MN694374 (Marine virus AFVG_250M614, complete genome) position: , mismatch: 10, identity: 0.697

cgctttcgcctgtgcttcagcctctgcttttaa	CRISPR spacer
ccgagcagccggtgcttcagcctcggcttttcc	Protospacer
*    . *** ************* ******  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 975878 : 987272 7 Liberibacter_phage(66.67%) transposase NA
DBSCAN-SWA_2 1014592 : 1023297 6 Streptococcus_phage(16.67%) NA NA
DBSCAN-SWA_3 1901599 : 1909898 12 Alteromonas_phage(28.57%) integrase attL 1896167:1896181|attR 1912155:1912169
DBSCAN-SWA_4 1925269 : 1936598 17 Vibrio_phage(37.5%) terminase NA
DBSCAN-SWA_5 4517980 : 4529023 7 Organic_Lake_phycodnavirus(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage