CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP005088	Sphingobium sp. TKS plasmid pTK4, complete sequence	1 crisprs	NA	1	1
NZ_CP005087	Sphingobium sp. TKS plasmid pTK3, complete sequence	1 crisprs	NA	1	1
NZ_CP005085	Sphingobium sp. TKS plasmid pTK1, complete sequence	0 crisprs	csa3,RT	0	4
NZ_CP005090	Sphingobium sp. TKS plasmid pTK6, complete sequence	0 crisprs	NA	0	0
NZ_CP005091	Sphingobium sp. TKS plasmid pTK7, complete sequence	0 crisprs	NA	0	0
NZ_CP005086	Sphingobium sp. TKS plasmid pTK2, complete sequence	0 crisprs	NA	0	0
NZ_CP005093	Sphingobium sp. TKS plasmid pTK9, complete sequence	0 crisprs	NA	0	0
NZ_CP005083	Sphingobium sp. TKS chromosome 1, complete sequence	1 crisprs	cas3,RT,csa3,WYL,DinG	0	9
NZ_CP005084	Sphingobium sp. TKS chromosome 2, complete sequence	0 crisprs	csa3,RT	0	2
NZ_CP005092	Sphingobium sp. TKS plasmid pTK8, complete sequence	0 crisprs	NA	0	0
NZ_CP005089	Sphingobium sp. TKS plasmid pTK5, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP005088_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP005088_1

56257-56346

Orphan

Consensus_repeat	Method
AAAAGTGAGTTTTGGGGTCGAGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP005088_1

>merge|NZ_CP005088|1|56257-56346|CRISPRCasFinder
AAAAGTGAGTTTTGGGGTCGAGTCGCGTGAGTGTTGGGGTAGCCTTCGGTGAGTTTTGGGGTCGGTAAAAGTGAGTTTTGGGGTCGAGTC

>NZ_CP005088|1|1|56257-56346|CRISPRCasFinder
AAAAGTGAGTTTTGGGGTCGAGTC	GCGTGAGTGTTGGGGTAGCCTTCGGTGAGTTTTGGGGTCGGT
AAAAGTGAGTTTTGGGGTCGAGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP005088.1\|WP_013038678.1\|44860_45796_+\|HEPN-domain-containing-protein	unknown	unknown	gnl\|CDD\|214800
NZ_CP005088.1\|WP_013038675.1\|44078_44315_+\|conjugal-transfer-protein-TraD	unknown	unknown	gnl\|CDD\|368890
NZ_CP005088.1\|WP_066564807.1\|59255_60206_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005088.1\|WP_162195970.1\|64471_64633_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005088.1\|WP_013038676.1\|44307_44583_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005088.1\|WP_013038681.1\|48214_48676_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005088.1\|WP_015460616.1\|57737_58373_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|222854
NZ_CP005088.1\|WP_015460617.1\|57430_57712_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005088.1\|WP_025547077.1\|64696_66217_-\|DNA-polymerase-Y-family-protein	unknown	unknown	gnl\|CDD\|176458
NZ_CP005088.1\|WP_015449228.1\|52393_53911_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP005088.1\|WP_013038680.1\|46515_48177_+\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl\|CDD\|226036
NZ_CP005088.1\|WP_025547075.1\|66131_66893_-\|damage-inducible-protein	unknown	unknown	gnl\|CDD\|226918
NZ_CP005088.1\|WP_006961816.1\|49478_50345_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP005088.1\|WP_025547078.1\|64104_64446_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005088.1\|WP_013038679.1\|45792_46509_+\|SIMPL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225516
NZ_CP005088.1\|WP_015460618.1\|56462_57374_+\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP005088.1\|WP_013038677.1\|44579_44864_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005088.1\|WP_025547079.1\|60580_63847_-\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235553
NZ_CP005088.1\|WP_001389365.1\|58472_59237_+\|IS6-like-element-IS6100-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP005088.1\|WP_015449229.1\|53897_54626_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760

Protein	Function_ID	Function_description	E-value
NZ_CP005088.1\|WP_013038678.1\|44860_45796_+\|HEPN-domain-containing-protein	gnl\|CDD\|214800	smart00748, HEPN, Higher Eukarytoes and Prokaryotes Nucleotide-binding domain.	9.36296e-13
NZ_CP005088.1\|WP_013038675.1\|44078_44315_+\|conjugal-transfer-protein-TraD	gnl\|CDD\|368890	pfam06412, TraD, Conjugal transfer protein TraD. This family contains bacterial TraD conjugal transfer proteins. Mutations in the TraD gene result in loss of transfer.	1.08604e-14
NZ_CP005088.1\|WP_015460616.1\|57737_58373_-\|AAA-family-ATPase	gnl\|CDD\|222854	PHA02518, PHA02518, ParA-like protein; Provisional.	3.43275e-46
NZ_CP005088.1\|WP_025547077.1\|64696_66217_-\|DNA-polymerase-Y-family-protein	gnl\|CDD\|176458	cd03468, PolY_like, DNA Polymerase Y-family. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in order to access the lesion. Because of their high error rates, TLS polymerases are potential targets for cancer treatment and prevention.	1.11248e-58
NZ_CP005088.1\|WP_015449228.1\|52393_53911_+\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.03875e-16
NZ_CP005088.1\|WP_013038680.1\|46515_48177_+\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl\|CDD\|226036	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion].	6.71463e-122
NZ_CP005088.1\|WP_025547075.1\|66131_66893_-\|damage-inducible-protein	gnl\|CDD\|226918	COG4544, COG4544, Uncharacterized conserved protein [Function unknown].	1.5913e-75
NZ_CP005088.1\|WP_006961816.1\|49478_50345_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	1.26226e-44
NZ_CP005088.1\|WP_013038679.1\|45792_46509_+\|SIMPL-domain-containing-protein	gnl\|CDD\|225516	COG2968, COG2968, Uncharacterized conserved protein [Function unknown].	7.48966e-34
NZ_CP005088.1\|WP_015460618.1\|56462_57374_+\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	1.07935e-25
NZ_CP005088.1\|WP_025547079.1\|60580_63847_-\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235553	PRK05672, dnaE2, error-prone DNA polymerase; Validated.	0
NZ_CP005088.1\|WP_001389365.1\|58472_59237_+\|IS6-like-element-IS6100-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.97603e-67
NZ_CP005088.1\|WP_015449229.1\|53897_54626_+\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	3.60063e-54

>NZ_CP005088.1|WP_015449229.1|53897_54626_+|ATP-binding-protein
MQRHEMLAALKGLGLKGMIAAFDDAVTNGIRRDRTAMEMLGDLLRAETAHREAASIRYRMTAARLPAIKDLDGFVFADTPINESLVRSLHAGSFLPERRNIVLVGGTGTGKTHLALAITAAVVRAGARGRFFNTVDLVNRLEEETRQAKAGSLAAQMARLDVVVLDELGYLPFARSGGQMLFHLISKLYEKTSVIITTNLAFGEWPSVFQDAKMTTALLDRVTHHCDIIETGNDSWRFKNRS
>NZ_CP005088.1|WP_015449228.1|52393_53911_+|IS21-family-transposase
MLIVETIAKIRREHRDGKPIKEIARDLRLSRNTVRKAIRAPEADFSYERKEQHRPQTGPFRERLDELLAENEERPRRERLRLTRIHDLLEREGFTGSYDAVRRYAARWKQERHAGGSGDMSKVFIPLMFRPGEAYQFDWSHEDVEIAGKPMRVKVAHMRLCWSRAPFVRAYPRETQEMVFDAHARGFAFLGGVPTRGIYDNMKTAVTTVFTGKERVFNRRFLIMTDHYGVEPVACSPAAGWEKGQVENQVQTGRERLFKPRLRFASMEELNAWLEAECRRWAERYAHPDMEDMTIAQALEMERPSLQPLTTPFDGFFESEHVASSTCLVSFDRNRYSVMAVAARHAVQLRAYADRVVIRCAGKVVAEHARLFGRNQTKFDPWHYLPVLIRKPGALRNGAPFQDWDLPPALAQLRRKLGKSDDADRRFVRVLAAVPEDGLEAVEAAVREAMAAGTANDEVILNILSRRREPQPVQAINVVVDLRLKHPPIADCARYDTVRGLNAAA
>NZ_CP005088.1|WP_006961816.1|49478_50345_-|recombinase-family-protein
MTRVGYARVSTIDQDLDIQVARLKAAGCEILRSETGSGASRTGRTELETIMQFLRADDELVVLRLDRLGRSTRDVLNLVHELDQKGASLRVLEPEVTTAGSMGRMVITILGMVADMELTFIKDRQRAGIEAARAEGVYKGRKKNIDDDEIRRRITAGASKASVARDLKISRMTVYRALDVIPSRIGLPEKPPSVTIALHLTIENFNKHGRGRKPARERIEAMLERDYQMQKTGNCDYTLTVAYDQGADGVSLDDEIASLQTEMFNIAESYRCSIETDVYEIGGQERAW
>NZ_CP005088.1|WP_013038681.1|48214_48676_+|hypothetical-protein
MPNERFEEFADRFMKSIGEPGCDLQALVDELIELHAVERDEFNRVRLISMHIALTNIAAEGLAKAQAPGSQIIGFLADNLSTYHLMLRQESLVDGQIDKAVLLRVTEREITAGRMKGNDPLRAFAEGGEYIRDNPMEGLFHADPSADDKPVLN
>NZ_CP005088.1|WP_013038680.1|46515_48177_+|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MEWFRQLGRAIRNLARLAREQPIWAITALTLSPLALIRHLFRTAILFLIVGIVLAGGMQFVLASLLGLARDSNLYQLGMMLTFLVIILVTLRALFQPLILRYGGPAGDDTHGSARFATDRETRPLAQNGDGLLIGRDRKSGKPLRYAGPAHLLTIAPTRTGKGVGTIIPNLLDYPGPVVCIDPKGENARITAHYRARFGPVHVLDPFGVTGMVGAAFNPLDRIDPAGLDLADDCMTLADALVYDAPGEAGEAHWNEEAKALIAGLILHIVCQEPAGTRTLATLRDRLTLAPQAFAAQLEAMQAQGGLTARAANRHLGKSDREAAGVLSAAQRHTHFLDSPRMTAVLGHSDFTFADVKAQPTSVYLVLPPDRLATYARWLRLMLAQGLTDLARAPASPARSVLFLLDEFAALGRLEPVERAMGLMAGYGIQLWPILQDVHQLRALYERRAGTFLSNAGVLQIFGVNDHDSAKLVSDLLGQETVVFESMSRAIDAEETGISFGSQHVGRPLLTPDEVRTLREDLQLLFLAGQRPIVAAKLRYFADREFAGKFDKV
>NZ_CP005088.1|WP_013038679.1|45792_46509_+|SIMPL-domain-containing-protein
MKPALFLTPLLGLAACTPAAPDPRGVDRDETVLTVTGTGRAEATPDQALFTAGLSSIAADAQAASARNAETMNKITAALARLDIPARDIQTRNLSVNRIDYGANKGRYEASNSVAVRVRDNKRVSEALAAVTAAGANIVSGPNLSVADPEKANLGAYGTAYKAARAKADAYAAAANLRVTRVLAISDGGQGGYMPQMADMEARIAAPPTVVPQAAPPVMAGTNMNIVTVRVDFALAAK
>NZ_CP005088.1|WP_013038678.1|44860_45796_+|HEPN-domain-containing-protein
MTMRADLDHLPAAKRRELERVARVLFDEFEDAVKTKLSDKRKGGRILKLILFGSYARGDWVEDRASGYISDYDLLVVVNSETFTDLQTWWAVADDHLVRELTVTRHLSTPVNFIVHSLMDVNDQLARGRPFFADIARDGIALYEAPGQGLAMPRQLDAQERHAEALRHRDHWFPLAAHALKLAQDSIADGVPRDAAFMLHQAVERAYNAVLLVLTLYAPKSHRLGILRSLAENLDPRLIEAWPRDTRAARRHFAQLQRAYVEARYSHAYEITPDELAWLVERVRHFHTIAAAICAEHLATIDTKNDPGGLP
>NZ_CP005088.1|WP_013038677.1|44579_44864_+|hypothetical-protein
MTRALDIGAIRAQVRALDYVRGTPAEVAMWREGDAEARANLAIEGMDLDADEHALFDMLRAEAVPPPLATAIVLKLLDHPDADPALAITPATIG
>NZ_CP005088.1|WP_013038676.1|44307_44583_+|hypothetical-protein
MTDTSRLSWQLLMVGPGIDRITPDIQDKLASLLDLLPATATINVQTDAGYVTVSRDWPSHRMETVDSLVDEIAAAPGITHIALPASEGQEP
>NZ_CP005088.1|WP_013038675.1|44078_44315_+|conjugal-transfer-protein-TraD
MQRRERTRHLIELGGLVQKAGLVELTDDDRATLYGAMLDLAARAQGDGNALALWKRRGKRAFDAEAEGQDNAEGNAHD
>NZ_CP005088.1|WP_015460618.1|56462_57374_+|replication-initiation-protein
MTRASSPVNNGKAKIALGDDTALTLSQKGRGNPFDPANYGEIVKPGELVDIVELSPLTLADRRIYNLLIANAWERISEPVIHRIAKTALKGTHQGNERIESSLLRLMGTIAIVTIRKGGKSYKRRVQLLGSSDESLEKDGFLHYRIPEELIEILRNSEVYARLKTQVMYCFESKYALCLYEMIERRIGLEYKQSEEFTIAELRGLLNVPEGKLERFADFNKYCLKVAQEEINKLCPFWVEFTPIKKGRKVERVSMMWLPKTMSGRRDAQNLIDQHSIVRRAKLRGDIPEMPVLVDFSAPAAQR
>NZ_CP005088.1|WP_015460617.1|57430_57712_-|hypothetical-protein
MAIARKPNSKPKSPMDEAAADAFIAGAAKPKAEPIATEADEAGQGAEPRKSPVMLRFDRALLAKVDAAAKRRGISRSAWIQFTVSRALDAGEG
>NZ_CP005088.1|WP_015460616.1|57737_58373_-|AAA-family-ATPase
MILAVGNTKGGVGKTTLAVNLAVARALAGRDLLLVDGDEQGTALTFTELRADRLGQAGYTAVALTGAALRSQVRQLAAKYDDIIIDVGGRDTGSLRAALTVADTLLVPVQPRSFDVWALDQVAALVAEAREINEGLRAVAVLNGADAQGADNEAALEMIGDIEGIEVLPTSIVRRKAFPNAAAEGRAVGEQSPRDAKAIDELAALVSAVFV
>NZ_CP005088.1|WP_001389365.1|58472_59237_+|IS6-like-element-IS6100-family-transposase
MTDFKWRHFQGDVILWAVRWYCRYPISYRDLEEMLAERGISVDHTTIYRWVQCYAPEMEKRLRWFWRRGFDPSWRLDETYVKVRGKWTYLYRAVDKRGDTIDFYLSPTRSAKAAKRFLGKALRGLKHWEKPATLNTDKAPSYGAAITELKREGKLDRETAHRQVKYLNNVIEADHGKLKILIKPVRGFKSIPTAYATIKGFEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHFAAAA
>NZ_CP005088.1|WP_066564807.1|59255_60206_-|hypothetical-protein
MLQIGDLHLPSAARTERSVDQKDRTFSVELRNVISRQPIKTVFKRIYRMCEAEEIDGILLMGDMTDFGKLDGYRAGAAYVANALQLGKGRRNALTFCGIVPGNHDIDRNLAKKPSMTAKFGPLNAALSAVGLEQIPVEQSLIRHVGPSDATCAVVLMNSCWGCGAVEYIPAEFRDSVGPAIEAAIAAGDPKVLSAYYDRQFDTPAFSDNSIAHLVETAGKMPREEQLVVVAHHNLLPQRMTRLAPYTELVNSGAVRASLMEAGRPILYLHGHIHTDPVEVLSVPGGDALVCISAPAAEDGFNIIEGSVAKIGGSQR
>NZ_CP005088.1|WP_025547079.1|60580_63847_-|DNA-polymerase-III-subunit-alpha
MRYAELQCASHFSFLRGASSCEELFTQAEACGLDALAITDRNSLAGIVRAHEAAKVTGVRLIVGCRLDLAEGQSLLVYPIDRSGYAHLCRLLSRGKKRGGKGKCIIGWDDVADFAEGLLAILLPGEVEEAQAVISRFARIFAGRGYLALTLRRRPGDQLRLHNLSNLAARHAVPTVITGDVLYHHPHRRVLQEVMTCTRHRCTIDELGARRELYADRYLMPAAEMHRLYGRYPQALARTLEIADRCRFSLDELKYQYPEEASITGLTPQAALEQMSWEAAKVRYPEGVPDKVARLLRHELGLIAELGYAPYFLTVNSIVRFARSRDILCQGRGSAANSAVCYVLGITSIDPERSDLLFERFISQERKEPPDIDVDFEHERREIVMQWVFDTYGRDHSALCSTVIRYRAKGAIKDVGKALGLSEDLIKALSGQVWGWSEEGVQERHAEELNLNLSDRRLRLALDLARELIGTPRHLSQHPGGFVLTHDRLDELVPIEPAAMADRQVIEWDKDDIDALKFMKVDCLALGMLTAMKRGFDFLEQHKGIRMDLASIPPEDPRTYAMIRAADTLGAFQIESRAQMAMLPHIKPRTFYDLVIEVAIVRPGPIQGDMVHPYLRRRAGKEKVEYPKPELEKVLGKTLGVPLFQEQAMRVAIECAGFTASEADQLRRAMATFKFTGGVSKFKEKLVSGMVERGYTAEFAEKTFGQLEGFGSYGFPESHAASFALIAYASCWLKCWHPEIFCASLLNAQPMGFYAPAQIVADARAHRVEVRPVCINASRWDCTLEPADGDRFAVRLGMRMVTGLKEADAARIIVARADEPFVSVEELWRRVGVGIGSLNRLAEADAFRGSMRLARREALWAIKALRDEQLPLFAAADARENGLVQEIVEQPVALRPMSEGREVVEDYGHVGLTLRQHPVSFLREELLRQKMVPCSALDRTKDGRYIWLAGLVLVRQRPGSAKGVMFITIEDESGIANLIIWPRMFEQNRRIVMGARMMGLYGQVQREGEVVHVIAKKLIDLSPLLGSLGQRWEAGPSSLGPDDRALSHVGPDTGAVLAGPPNPRDILVRDLHIDQVRDRPLIKSRNFH
>NZ_CP005088.1|WP_025547078.1|64104_64446_-|hypothetical-protein
MMRAVEIAVPALPLLAILMLMGSSAAQAVDHHKALRVVCAQGRSFGLRIEGRQAHVQLADSELVLVRKPSSLGQHFRNGDATLILDDDYVAFVQRGDWGWQDCHIDQPSGSDR
>NZ_CP005088.1|WP_162195970.1|64471_64633_-|hypothetical-protein
MKDQILRATERAPQWLRNDLASKDAGVRAQAEEILATTIANALANGTGAPAED
>NZ_CP005088.1|WP_025547077.1|64696_66217_-|DNA-polymerase-Y-family-protein
MRQVVSLFLPTWPTDRLRRRLGRNAPPPDAALVLVGMEGNRRVLTAANAAARAIGLHAGMAATQAQALVPDLLIMDADLEADRQALERLAIWSLRRYAPIIALDPPDGLMLDITGADHAHGGAMGVLRDILKRLAEVETAGRAVCAPAYGAAHALARYGADPFRVVDPLELADAIGDLPLAALRLDRATIMSLSKLGLETIADLEAMPRASLALRFGSKPGQRLDQAYGRASEPFEPIAAPERIEVERRFAEPIGAPETLARYTHKLVDQLCQQLEEAGVGARRLDLRFHRVDNGIEAIRAGLARPSRDRKQMGRLLCDRIETVDPGFGVERMLLAAPAVEPLRFRTISNLGDVPVPDVAALVDILGNRVGEERLYRYAARESDIPERSVTRIAPMADPTLLRWPERWPRPARLFARPEPIDTMALLPDHPPVHFIWRGIRRRVKRADGPERIYGEWHMSEAEWLSVRDYFLLEDETGARYWVFRQGDGMDSATGGQGWFLHGLFG
>NZ_CP005088.1|WP_025547075.1|66131_66893_-|damage-inducible-protein
MTERGARPHVAALRAKIAEIEGGDRRARSVLPFGIEVIDSKLPGGGLALGALHEVAGGAQGATDGAAAALFAAGIVGRISGSILWCMTQADLFAPAIAQAGLDPDRVIYVEARDETALLSCFEEGLRHGGLGGVVAEVARLSMTASRRLQLAAESTGTIGIAVRRWRRSAEASDLGQPTAAATRWRVTAVPSELLPVPGVGRHRWFVELIRCRAGESADFLVEACDATGCLALPADLADRSAASQAWAERAAS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP005088_1	1.1\|56281\|42\|NZ_CP005088\|CRISPRCasFinder	56281-56322	42	NZ_CP005192	Sphingobium sp. MI1205 plasmid pMI3, complete sequence	31147-31188	0	1.0
NZ_CP005088_1	1.1\|56281\|42\|NZ_CP005088\|CRISPRCasFinder	56281-56322	42	NZ_CP005087	Sphingobium sp. TKS plasmid pTK3, complete sequence	20315-20356	0	1.0
NZ_CP005088_1	1.1\|56281\|42\|NZ_CP005088\|CRISPRCasFinder	56281-56322	42	NC_020562	Sphingomonas sp. MM-1 plasmid pISP1, complete sequence	159529-159570	0	1.0
NZ_CP005088_1	1.1\|56281\|42\|NZ_CP005088\|CRISPRCasFinder	56281-56322	42	NZ_CP005193	Sphingobium sp. MI1205 plasmid pMI4, complete sequence	18238-18279	0	1.0
NZ_CP005088_1	1.1\|56281\|42\|NZ_CP005088\|CRISPRCasFinder	56281-56322	42	NC_020563	Sphingomonas sp. MM-1 plasmid pISP4, complete sequence	33102-33143	0	1.0
NZ_CP005088_1	1.1\|56281\|42\|NZ_CP005088\|CRISPRCasFinder	56281-56322	42	NZ_CP005088	Sphingobium sp. TKS plasmid pTK4, complete sequence	56281-56322	0	1.0
NZ_CP005088_1	1.1\|56281\|42\|NZ_CP005088\|CRISPRCasFinder	56281-56322	42	NZ_AP017658	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_4, complete sequence	34773-34814	1	0.976
NZ_CP005088_1	1.1\|56281\|42\|NZ_CP005088\|CRISPRCasFinder	56281-56322	42	NZ_CP047220	Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed3, complete sequence	56938-56979	2	0.952

1. spacer 1.1|56281|42|NZ_CP005088|CRISPRCasFinder matches to NZ_CP005192 (Sphingobium sp. MI1205 plasmid pMI3, complete sequence) position: , mismatch: 0, identity: 1.0

gcgtgagtgttggggtagccttcggtgagttttggggtcggt	CRISPR spacer
gcgtgagtgttggggtagccttcggtgagttttggggtcggt	Protospacer
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2. spacer 1.1|56281|42|NZ_CP005088|CRISPRCasFinder matches to NZ_CP005087 (Sphingobium sp. TKS plasmid pTK3, complete sequence) position: , mismatch: 0, identity: 1.0

gcgtgagtgttggggtagccttcggtgagttttggggtcggt	CRISPR spacer
gcgtgagtgttggggtagccttcggtgagttttggggtcggt	Protospacer
******************************************

3. spacer 1.1|56281|42|NZ_CP005088|CRISPRCasFinder matches to NC_020562 (Sphingomonas sp. MM-1 plasmid pISP1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgtgagtgttggggtagccttcggtgagttttggggtcggt	CRISPR spacer
gcgtgagtgttggggtagccttcggtgagttttggggtcggt	Protospacer
******************************************

4. spacer 1.1|56281|42|NZ_CP005088|CRISPRCasFinder matches to NZ_CP005193 (Sphingobium sp. MI1205 plasmid pMI4, complete sequence) position: , mismatch: 0, identity: 1.0

gcgtgagtgttggggtagccttcggtgagttttggggtcggt	CRISPR spacer
gcgtgagtgttggggtagccttcggtgagttttggggtcggt	Protospacer
******************************************

5. spacer 1.1|56281|42|NZ_CP005088|CRISPRCasFinder matches to NC_020563 (Sphingomonas sp. MM-1 plasmid pISP4, complete sequence) position: , mismatch: 0, identity: 1.0

gcgtgagtgttggggtagccttcggtgagttttggggtcggt	CRISPR spacer
gcgtgagtgttggggtagccttcggtgagttttggggtcggt	Protospacer
******************************************

6. spacer 1.1|56281|42|NZ_CP005088|CRISPRCasFinder matches to NZ_CP005088 (Sphingobium sp. TKS plasmid pTK4, complete sequence) position: , mismatch: 0, identity: 1.0

gcgtgagtgttggggtagccttcggtgagttttggggtcggt	CRISPR spacer
gcgtgagtgttggggtagccttcggtgagttttggggtcggt	Protospacer
******************************************

7. spacer 1.1|56281|42|NZ_CP005088|CRISPRCasFinder matches to NZ_AP017658 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_4, complete sequence) position: , mismatch: 1, identity: 0.976

gcgtgagtgttggggtagccttcggtgagttttggggtcggt	CRISPR spacer
gcgtgagttttggggtagccttcggtgagttttggggtcggt	Protospacer
******** *********************************

8. spacer 1.1|56281|42|NZ_CP005088|CRISPRCasFinder matches to NZ_CP047220 (Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed3, complete sequence) position: , mismatch: 2, identity: 0.952

gcgtgagtgttggggtagccttcggtgagttttggggtcggt	CRISPR spacer
gcgtgagttttagggtagccttcggtgagttttggggtcggt	Protospacer
******** **.******************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6822 : 59237

Escherichia_phage(38.89%)

integrase,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001389365.1\|6822_7587_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_013040175.1\|7650_8634_+	alpha-ketoacid dehydrogenase subunit beta	E3SJ83	Synechococcus_phage	3.3e-06	23.7
WP_007682525.1\|8630_8870_+	acyltransferase	NA	NA	NA	NA
WP_066564838.1\|8987_11522_+	TonB-dependent receptor	NA	NA	NA	NA
WP_007682022.1\|11692_12634_+	XdhC family protein	NA	NA	NA	NA
WP_007682023.1\|12630_13623_+	molybdopterin-binding protein	NA	NA	NA	NA
WP_007682024.1\|13661_15008_+	glutathione-disulfide reductase	NA	NA	NA	NA
WP_007682027.1\|15142_16381_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_007682029.1\|16748_17501_+	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	3.2e-17	31.3
WP_145907861.1\|17824_18067_+	hypothetical protein	NA	NA	NA	NA
WP_007682510.1\|17949_18522_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_013040172.1\|18582_19053_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_021319354.1\|19634_20639_+	FAD-binding protein	NA	NA	NA	NA
WP_001389365.1\|20657_21422_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_015460611.1\|21887_22640_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	4.3e-14	30.5
WP_007682394.1\|22661_23348_+	EthD domain-containing protein	NA	NA	NA	NA
WP_007682395.1\|23347_23710_+	hypothetical protein	NA	NA	NA	NA
WP_001389365.1\|23807_24572_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_007682496.1\|25859_26108_+	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_007682494.1\|26104_26494_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_007682492.1\|26493_26799_+	hypothetical protein	NA	NA	NA	NA
WP_007682491.1\|26795_27194_+	hypothetical protein	NA	NA	NA	NA
WP_007682488.1\|27193_28156_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_007683624.1\|28219_29317_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_004211466.1\|29767_30631_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.4e-29	33.2
WP_007684572.1\|31176_32373_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.9e-80	43.0
WP_001389365.1\|32757_33522_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_066564841.1\|33912_36285_+	TonB-dependent receptor	NA	NA	NA	NA
WP_001389365.1\|36455_37220_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_007685994.1\|37412_38105_+	hypothetical protein	NA	NA	NA	NA
WP_041386987.1\|39308_39503_-	helix-turn-helix domain-containing protein	Q786F1	Bacillus_phage	8.0e-05	39.7
WP_013038672.1\|39538_40276_-	hypothetical protein	NA	NA	NA	NA
WP_013038673.1\|40433_43559_-	Ti-type conjugative transfer relaxase TraA	V5UQN3	Mycobacterium_phage	7.3e-15	26.9
WP_013038674.1\|43735_44041_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_013038675.1\|44078_44315_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_013038676.1\|44307_44583_+	hypothetical protein	NA	NA	NA	NA
WP_013038677.1\|44579_44864_+	hypothetical protein	NA	NA	NA	NA
WP_013038678.1\|44860_45796_+	HEPN domain-containing protein	NA	NA	NA	NA
WP_013038679.1\|45792_46509_+	SIMPL domain-containing protein	NA	NA	NA	NA
WP_013038680.1\|46515_48177_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_013038681.1\|48214_48676_+	hypothetical protein	NA	NA	NA	NA
WP_006961816.1\|49478_50345_-	recombinase family protein	E5FFF9	Burkholderia_phage	4.8e-25	40.0
WP_015449228.1\|52393_53911_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	4.8e-12	26.2
WP_015449229.1\|53897_54626_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	5.6e-35	39.3
WP_015460618.1\|56462_57374_+	replication initiation protein	A0A1V0E006	Clostridioides_phage	3.1e-06	32.3
WP_015460617.1\|57430_57712_-	hypothetical protein	NA	NA	NA	NA
WP_015460616.1\|57737_58373_-	AAA family ATPase	A4JWV7	Burkholderia_virus	1.2e-44	52.6
WP_001389365.1\|58472_59237_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP005083

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP005083_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP005083_1

3607795-3607896

Orphan

Consensus_repeat	Method
AAGCCCCTCCCCTTCAGGGGAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP005083_1

>merge|NZ_CP005083|1|3607795-3607896|CRISPRCasFinder
AAGCCCCTCCCCTTCAGGGGAGGGGTTGGGGTGGGAGCCATCCATTTTGCACAGCGCTTGGGGCACTCCCCCACCCCCAACCCCTCCCCTTCAGGGGAGGGG

>NZ_CP005083|1|1|3607795-3607896|CRISPRCasFinder
AAGCCCCTCCCCTTCAGGGGAGGGG	TTGGGGTGGGAGCCATCCATTTTGCACAGCGCTTGGGGCACTCCCCCACCCC
CAACCCCTCCCCTTCAGGGGAGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP005083.1\|WP_066559928.1\|3603867_3605283_-\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|273037
NZ_CP005083.1\|WP_066559954.1\|3612917_3614621_+\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|234942
NZ_CP005083.1\|WP_066559926.1\|3603229_3603835_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|365914
NZ_CP005083.1\|WP_066559944.1\|3610942_3611713_+\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|239321
NZ_CP005083.1\|WP_066559942.1\|3609575_3610946_+\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|227122
NZ_CP005083.1\|WP_066559931.1\|3606109_3606922_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|234899
NZ_CP005083.1\|WP_021317369.1\|3611987_3612122_+\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|179004
NZ_CP005083.1\|WP_066559924.1\|3602353_3603004_+\|DUF4136-domain-containing-protein	unknown	unknown	gnl\|CDD\|379281
NZ_CP005083.1\|WP_066561960.1\|3614646_3615294_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_CP005083.1\|WP_066559933.1\|3607048_3607780_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|234689
NZ_CP005083.1\|WP_066559920.1\|3601150_3602155_+\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|234866
NZ_CP005083.1\|WP_066559930.1\|3605726_3605990_-\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP005083.1\|WP_066559919.1\|3599542_3601135_+\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|240528
NZ_CP005083.1\|WP_066559962.1\|3615609_3616164_-\|2'-5'-RNA-ligase	unknown	unknown	gnl\|CDD\|224431
NZ_CP005083.1\|WP_066559956.1\|3615300_3615603_+\|alkylphosphonate-utilization-protein	unknown	unknown	gnl\|CDD\|225380
NZ_CP005083.1\|WP_082748686.1\|3612669_3612882_+\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|376620
NZ_CP005083.1\|WP_066559939.1\|3607906_3609448_+\|2-polyprenylphenol-6-hydroxylase	unknown	unknown	gnl\|CDD\|273909
NZ_CP005083.1\|WP_066559918.1\|3598050_3598707_-\|Tim44-domain-containing-protein	unknown	unknown	gnl\|CDD\|367895
NZ_CP005083.1\|WP_066561959.1\|3598897_3599395_+\|protein-export-chaperone-SecB	unknown	unknown	gnl\|CDD\|376817
NZ_CP005083.1\|WP_066561961.1\|3616289_3616727_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|226389

Protein	Function_ID	Function_description	E-value
NZ_CP005083.1\|WP_066559928.1\|3603867_3605283_-\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|273037	TIGR00362, DnaA, chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP005083.1\|WP_066559954.1\|3612917_3614621_+\|membrane-protein-insertase-YidC	gnl\|CDD\|234942	PRK01318, PRK01318, membrane protein insertase; Provisional.	0
NZ_CP005083.1\|WP_066559926.1\|3603229_3603835_-\|peptidylprolyl-isomerase	gnl\|CDD\|365914	pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD. The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilized in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function.	1.69792e-34
NZ_CP005083.1\|WP_066559944.1\|3610942_3611713_+\|DsbA-family-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	1.52098e-54
NZ_CP005083.1\|WP_066559942.1\|3609575_3610946_+\|M48-family-metalloprotease	gnl\|CDD\|227122	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only].	4.30133e-83
NZ_CP005083.1\|WP_066559931.1\|3606109_3606922_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	3.77828e-152
NZ_CP005083.1\|WP_021317369.1\|3611987_3612122_+\|50S-ribosomal-protein-L34	gnl\|CDD\|179004	PRK00399, rpmH, 50S ribosomal protein L34; Reviewed.	6.21473e-11
NZ_CP005083.1\|WP_066559924.1\|3602353_3603004_+\|DUF4136-domain-containing-protein	gnl\|CDD\|379281	pfam13590, DUF4136, Domain of unknown function (DUF4136). This domain is found in bacterial lipoproteins. The function is not known.	7.17935e-16
NZ_CP005083.1\|WP_066561960.1\|3614646_3615294_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	1.76595e-99
NZ_CP005083.1\|WP_066559933.1\|3607048_3607780_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	8.77686e-109
NZ_CP005083.1\|WP_066559920.1\|3601150_3602155_+\|tryptophan--tRNA-ligase	gnl\|CDD\|234866	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.	0
NZ_CP005083.1\|WP_066559930.1\|3605726_3605990_-\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.48841e-25
NZ_CP005083.1\|WP_066559919.1\|3599542_3601135_+\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|240528	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	8.18612e-138
NZ_CP005083.1\|WP_066559962.1\|3615609_3616164_-\|2'-5'-RNA-ligase	gnl\|CDD\|224431	COG1514, LigT, 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis].	1.19254e-11
NZ_CP005083.1\|WP_066559956.1\|3615300_3615603_+\|alkylphosphonate-utilization-protein	gnl\|CDD\|225380	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism].	5.05658e-38
NZ_CP005083.1\|WP_082748686.1\|3612669_3612882_+\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|376620	pfam01809, Haemolytic, Haemolytic domain. This domain has haemolytic activity. It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.	5.58632e-35
NZ_CP005083.1\|WP_066559939.1\|3607906_3609448_+\|2-polyprenylphenol-6-hydroxylase	gnl\|CDD\|273909	TIGR01982, Probable_protein_kinase_UbiB, 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	0
NZ_CP005083.1\|WP_066559918.1\|3598050_3598707_-\|Tim44-domain-containing-protein	gnl\|CDD\|367895	pfam04280, Tim44, Tim44-like domain. Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region. This family includes the C-terminal region of Tim44 that has been shown to form a stable proteolytic fragment in yeast. This region is also found in a set of smaller bacterial proteins. The molecular function of the bacterial members of this family is unknown but transport seems likely. The crystal structure of the C terminal of Tim44 has revealed a large hydrophobic pocket which might play an important role in interacting with the acyl chains of lipid molecules in the mitochondrial membrane.	6.65723e-49
NZ_CP005083.1\|WP_066561959.1\|3598897_3599395_+\|protein-export-chaperone-SecB	gnl\|CDD\|376817	pfam02556, SecB, Preprotein translocase subunit SecB. This family consists of preprotein translocase subunit SecB. SecB is required for the normal export of envelope proteins out of the cell cytoplasm.	1.88649e-71
NZ_CP005083.1\|WP_066561961.1\|3616289_3616727_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|226389	COG3871, COG3871, Uncharacterized stress protein (general stress protein 26) [General function prediction only].	2.66793e-34

>NZ_CP005083.1|WP_066559933.1|3607048_3607780_+|class-I-SAM-dependent-methyltransferase
MSETASFGYRDVEATDKQGMVRAVFSNVASKYDLMNDAMSAGAHRLWKDQFVNRVKPRRDEQILDMAGGTGDIAFRMHKHGAQVTVSDINPEMLAVGVERAQKKGYEGLIWSEQNAEVLSFGERAFDAYTIAFGIRNVTHIDKALREAHRVLKFGGRFFCLEFSTTTWPGFSDVYDVYSHRLVPKLGKLLADDEDSYRYLIESIRRFPPMPEFERMIREAGFVQTKVEPILGGLVAIHSGWKI
>NZ_CP005083.1|WP_066559931.1|3606109_3606922_-|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVETTVAGLRSVLEGAVLTRVEPRRADLRFPIPVDLRQRLTGATITALSRRAKYGLIDTDRGDTLIFHLGMSGRWRIDPAEIGAHDHLLIETSGGRLLSLNDPRRFGSLDLVRSEVWESYSPFTRMGPEPLGPDFTAAALTARLHGKATSIKAALLDQRIVAGLGNIYVCEALNMAGIAPTREAGKISRPRLTLLVEAIREVLTAAIAAGGSTLRDYARPDGELGYFSKQWRVYGREGQPCHCGTPISRRVDGGRSTFFCPKCQR
>NZ_CP005083.1|WP_066559930.1|3605726_3605990_-|30S-ribosomal-protein-S20
MANTPQAKKRIRRNARRAEINGARISRIRTLVKKVETALAAGDKAAATTALQSVQPELARGVARGVLHKNTAARKFGRLTKRVGALG
>NZ_CP005083.1|WP_066559928.1|3603867_3605283_-|chromosomal-replication-initiator-protein-DnaA
MKDITAVIGSFSGLDTQQTARLETAWATIRAGLRRDIGARMFDQWLKAAQLGDYCPESQTLDLLFASDFTANFVSGQFGDRLRMAWRCAGASVREVRLLRAPNAVGPRILELHQAETAVSPDHAVADAQGPASNFQPRHSFDEFVTGDTNHLAFSAAQAMAGKSQPRFSPLFIHGGTGQGKTHLLHAIAQLFSSHSPSAPVLYMSAERFMMEFVNAMRANETMMFKARLRAARLLLIDDIQFIAGKGSTQEEFLHTINDLIDAGARIVVTADRAPQMLDAIDPRILSRLAGGLVADIRPAGLDLRLAILEAKRAIAGDPPVPDAVVDFLARSIRSNVRELEGAFNKLIAYGQLTGRSIDLEFAQGMLADAVRANARRITVDEIQKACAAHYKIDAAEMRSKRRARAVARPRQVAMYLAKKMTPRSLPEIGRIFGGRDHSTVIHAVRTIEELRQSNPDIDADIRALQRQLEG
>NZ_CP005083.1|WP_066559926.1|3603229_3603835_-|peptidylprolyl-isomerase
MIRQLSLFLAAFFCLGSAFAQTAAAPSPADVRVALETSVGRIVVAVHVAKAPVTATNFLRYVDQKRLDGTLFYRGVGTADYGFVQGGAQNDPKRVLPPIKHEPTSQTGLTHDDGALSMARYAPGSATGDFFIVLGKMPGMDAHPEAAGDNQGFAVFAHIVEGMEVVKAILAAPKSPTAGEGVMKGQMLEQPVKILTVRRMP
>NZ_CP005083.1|WP_066559924.1|3602353_3603004_+|DUF4136-domain-containing-protein
MTRFKKIGLIAAPALALVALSGCATSFKADVARFQQLPAPAGQSFTIVADDPRLAGGLEFSHYADLVGQRLTQTGYVAAGDPARADLIVRVSYGVDNGREKVRSTGVGAPDPFFYGGWGWRGRWGRPWGYGFYDPWLFGPGGYNDISSYTVYTSDLSMKIDRAADHRRLFEGKAQAQSLSNKLTYLVPNLIDAMFTGFPGQNGENVKITLPPEKKG
>NZ_CP005083.1|WP_066559920.1|3601150_3602155_+|tryptophan--tRNA-ligase
MRVLSGIQPTGNLHLGNYLGAIRNWVRMQDEMDADSQCFFFLADMHSITVHEGREQRIRNVRDMAAALVAAGIDPDRSVLFNQARVPAHAELCWLLNGTARIGWLNRMTQFKDKVGKDREGASIGLFVYPVLQAADILVYNATHVPVGEDQKQHLELARDIATKFNTDFGVELFTLPDPIIPKESARIMSLRDGTAKMSKSDPSDMSRINLTDDDDAIMQKVKKAKTDPEPLPETAAGLAGRPEANNLVGIYATLAGTTADAVCAEFAGKGFGAFKPALGELLVETLRPIRSRFMELRTDDAALDAILEKGAAKASTAAAPTLRAAYDAMGLMR
>NZ_CP005083.1|WP_066559919.1|3599542_3601135_+|murein-biosynthesis-integral-membrane-protein-MurJ
MKLARALGSVGGLTLASRILALVRDSLAARYVGAGFASDAFNGVAFRLPNMFRALFAEGAFSAAFIPMFNRKAAGPGGIAEGYHFAERALAVLLPVLVVFTALLIAAAWPITWALSGGFSRQHPTAEQFAFAVMLSRITLPYLALISLASLLGGILNSLDKFWVNAAAPILLNVAMIAGLWLFHGANEYETARVQAISVTVGGALQLLWLVWACRRAGVSMKLKRPRFDADVKELLRLIVPAAAGAGASQINLLISTALSGWLLASGSITYIYYADRLNQLPLGLIGIGLGTILLPTISRLLSTGQEQVAMDTQNRGIELALFLTLPATVAFIIVAEPIVRGLFQYGRFTVEDAQRCGWALSAFSIGLPSYVLVKVLTPGYYARGDTRTPVRYAMLSIVINIIGNFVLIPLLGQLGMGHVGPPLATALSSTVNVAMLYSTLVKRGHFAADAQLRRRLPRLAVAAVAMGAALYAGEGLLDPWLGGVMIQRYVALAVLVGVGIALYGVACFVTGAYRLSDLKALMRRKSATS
>NZ_CP005083.1|WP_066561959.1|3598897_3599395_+|protein-export-chaperone-SecB
MAEEADIIQTTGNGADTGPQIALISQYVKDLSFENPNAPAVYQWQDQPQIDVQFNIGADKVGEEVVEVSLKVEVKATAPQGTAFAVELVYAAIFGMRNVPEDQMQPFMLAEAPRLLFPFARRVLADAIRDGGFPPLLLDPIDFGGLYVQQANAMAQTTGEPAGHA
>NZ_CP005083.1|WP_066559918.1|3598050_3598707_-|Tim44-domain-containing-protein
MYVIVILAMIAGFLALRLYSVLGKRTGHEQEPALRPADERAKVTIVQPRPVAEMAGDSVRLSDGLIAPGGEAGVRALIAADRSFDVPQFVEGAKAAYKMVLEAFWRGDRQELEWLCDADVLASFEEAIAARQAEGHVLDNRLVRIEKAQIIDASVTGRMAEVSLRFEADIAAVTRDKDGHVVAGSLTDAVGTNDIWTFSRDLRSTDPNWRLSETDEAA
>NZ_CP005083.1|WP_066559939.1|3607906_3609448_+|2-polyprenylphenol-6-hydroxylase
MASHITHIWRLVKWSRILARHGALRGIERDPLTPTPVRRLIKVARFGARVPRQPRYADAFQSIGPAAIKLGQTLATRPDLVGDEAANDLLRLQDALPPVPFATIKAQIEQSFGRPLEALYSRFDEEPVGAASIAQVHRAVTTQGRDVAVKVIRPGVTDQFNRDIQTYEWAAAHVEMLGGELARLRPRLVIANMKRWTARELDLRREAASASELGEAMEAMPGYRVPAIDWDRTSGKVMTMEWIDGVKISDRDALIAAGHDVKEIASRLVNAFLRQAIAEGFFHADMHQGNLFVTANGDIVAIDFGIMGRIDRRARMWLAEILYGLITGNYKRVAEIHFEAQYVPGHHNVEEFATALRAVGEPMRGKPVRELSVGGMLDGLFAITRDFDMQTQPHLLLLQKTMVMVEGVATSLDPDINLWETSGPYVKEWLRSELGPEAKAADALIENWRILQRLPGLVKRIEEAFPEKGGAPPPPPLPEVRLIRVGAGWRYVVVALLAGAIGAGAMAAVTSFL
>NZ_CP005083.1|WP_066559942.1|3609575_3610946_+|M48-family-metalloprotease
MPNHDRMSARWLRVAAIAVASLALMARPAAAQQILRDAETEAFMADMSAPLAKAAGMEPRNVQVLVINDPDINAFVAGGQYVWVHSGLIAAADNVNQVQGVVAHEIGHIEGGHVIRYGEGMKEATGITLLSLVLGAAAIAAGGAEAGMGILGMGQQAAMGKFLAFSRAQESSADLAGARYLSKAGISGKGSLEFFKKLQNQEYRLAIPQDDSYGRTHPLSGERINVLREVYSVDPAWDKPMDPKLEARFERIKAKLVGFVSEPNQTLIKYPESDQSIPAHYARAYAWHKSAYPDKALSEVDALLTAAPHDPYFLELKGQVLLESGKPTDAIPPLREAVQLTNQPLIATLLGHALIATENDANFAEAEKVLRNAIARDRENPFAWYQLGVVYEHRGDLPRAALATAERYSMIGEDQMALRSADAAMQGLKPGTVDYLRAQDIAMVSRAAVEQKRKKK
>NZ_CP005083.1|WP_066559944.1|3610942_3611713_+|DsbA-family-protein
MTENSRPGFRAALSNRTILMTLGVFAFIAVTATGAALGTQSTGRVDASDKAAIEQIVHDYILEHPEIIPQAVEKLQTKRMAGTIDASRQTIETPYAGAWEGAAKGDVTVVEFFDYACGYCRASLPDLAKLVGEDKGVKVVYRELPILSDESINAAKVSLLAAEKNQYMPYHRALYAAGKVTRETILAAAAKVGIDAKAAQAAMADSKYNAEIQSNIGLAQKLQASGTPTFVIGGQVLNGAVGYDALKAAVASARGK
>NZ_CP005083.1|WP_021317369.1|3611987_3612122_+|50S-ribosomal-protein-L34
MKRTFQPSNLVRKRRHGFRARMATPGGRNVIRARRSRGRKSLSA
>NZ_CP005083.1|WP_082748686.1|3612669_3612882_+|membrane-protein-insertion-efficiency-factor-YidD
MIGRILILIARFWQLGPSRILPPSCRYAPSCSEYAIQAIRKYGAVKGSWLATKRLMRCHPWGGSGYDPVP
>NZ_CP005083.1|WP_066559954.1|3612917_3614621_+|membrane-protein-insertase-YidC
MDDKKNIILAVLLTAAILFGWPYVTKHFFPAANPPATKVESGKTTPLTPSGSTPAAEGSAAVRDLALVLKDSPRIPIRTPKITGSINLKGARIDDIVLPTYKETIAKDSPAIRLYSPSGTKDAYFAGFGWQGEGVKTPDGSSVWTAQSQELTPTSPVTLTWNNGAGQTFEIRYAIDENYMITAQQKVSNSSAGAVGVKSYGYVSRAHPSVDPDTWTIHVGPMGVFNGAANYDVNYKDLAKGPASQSFQSTGGWIGFTDKYWLSALVPDQKAAFSGQMRKGAGTQFQTDVSLAPVMLAPGKAVTQTNRLFVGAKEVKTLQAYERAGVPLFDRAIDWGWFYWFEQPIFALLHWLFTVIGNFGVAIICLTFVVRGLMFPVAQRQFASMAAMRAVQPKMKALQEKHKDDKQKLQQEMMELYKREKVNPLAGCLPIFIQIPIFFALYKVLQLTIEMRHQPFVLWIKDLSAPDPLHIVNLFGLLPFTPPAFLGIGLLALLLGISMYFQFKLNPAQMDPMQQQVFAIMPWMMMFIMAPFAAGLLVYWITNNCLSMLQQWFLYKRHPQLSAATAK
>NZ_CP005083.1|WP_066561960.1|3614646_3615294_+|YihA-family-ribosome-biogenesis-GTP-binding-protein
MTEQEQADLIEEARKVFAGPIAFLKSAPDLKFLPDMAVNEVAFAGRSNVGKSSLLNALTNRNGLARTSNTPGRTQELNFFDVGDPLRFRLVDMPGYGYAKAPKDMVRKWRFLVNDYLRGRAKLKRTLVLIDSRHGIKDADTDILDMLDAAAVSYRIVLTKADKVKASHLAEISQAVAEAIRKRPAAHPDIIATSSDKGMGIAELRAAVLESVMQG
>NZ_CP005083.1|WP_066559956.1|3615300_3615603_+|alkylphosphonate-utilization-protein
MTDDDYIYDEASGEWISAAEASSKASAADSIEVRDAVGNLLADGDQVTLIKDLAVKGAGQTLKRGTLIKSIRLTGDPQEIDCRYDGIKGLVLRAEFVRKR
>NZ_CP005083.1|WP_066559962.1|3615609_3616164_-|2'-5'-RNA-ligase
MESRSTQTLFRLFFALKPSPLIARQTDHFAETIAQGARRIAVDHQHVTLAISSDYVDYPNAVIKALIRAGTGVMAEPFDLRLDQLSIGNRSAALRPSHAMPLLNALQRQIVAGMKEAGVMLRPGWSFSPHQTLFYRNGRSEVRPVDGFSWHVDQFMLVCSHVGRTHHETLATWGLNGSGQYSLF
>NZ_CP005083.1|WP_066561961.1|3616289_3616727_+|pyridoxamine-5'-phosphate-oxidase-family-protein
MMQLTLASLAEKMKDIDFAMLSTHADDGQIGARPMSNNRDVAYGGDSYYFTTEDTLMVKDIERDPRVGLSFQGRTGLLKQNPLFIAVEGRADLIRDRDAFEAHWNSDLQGWFEEGPDTPGLVMIRVHAERAHVWDGENEAEMELG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

229205 : 274402

Escherichia_phage(22.22%)

integrase,transposase

attL 268579:268600|attR 274945:274966

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001389365.1\|229205_229970_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_066553228.1\|230418_231309_+	haloalkane dehalogenase	B9U1C3	Vaccinia_virus	2.9e-57	43.0
WP_001389365.1\|231468_232233_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_041386225.1\|232362_232914_-	recombinase family protein	A0A1S6L009	Salmonella_phage	1.5e-43	55.4
WP_031286075.1\|233052_236010_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.7e-234	44.2
WP_020819378.1\|239406_239697_-	hypothetical protein	NA	NA	NA	NA
WP_020819379.1\|239755_240166_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_020819380.1\|240162_240444_-	hypothetical protein	NA	NA	NA	NA
WP_066553233.1\|240787_242056_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_066553236.1\|242518_243706_+	hypothetical protein	NA	NA	NA	NA
WP_158511719.1\|243967_245173_-	hypothetical protein	NA	NA	NA	NA
WP_066553243.1\|245193_246036_-	AAA family ATPase	NA	NA	NA	NA
WP_066553245.1\|246032_246443_-	hypothetical protein	NA	NA	NA	NA
WP_007685994.1\|247088_247781_-	hypothetical protein	NA	NA	NA	NA
WP_145907457.1\|249638_250553_+	hypothetical protein	NA	NA	NA	NA
WP_020819382.1\|252491_253622_-	replication initiator protein A	A0A0K1Y6J9	Rhodobacter_phage	1.4e-24	30.4
WP_025160828.1\|253702_254773_-	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_015460581.1\|254769_255966_-	AAA family ATPase	A0A240F4U1	Ochrobactrum_phage	2.2e-44	31.5
WP_020819384.1\|256173_256356_-	hypothetical protein	NA	NA	NA	NA
WP_021224597.1\|256527_257376_+	virulence-associated protein E	A0A2I6UGE7	Salinibacter_virus	7.1e-05	27.3
WP_020819387.1\|257372_257816_+	hypothetical protein	NA	NA	NA	NA
WP_020819388.1\|257855_258149_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_020819389.1\|258145_258415_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_020819391.1\|258779_262229_-	AAA family ATPase	NA	NA	NA	NA
WP_037445509.1\|262232_263468_-	DNA repair exonuclease	NA	NA	NA	NA
WP_079640273.1\|263784_264138_+	hypothetical protein	NA	NA	NA	NA
WP_020819394.1\|264171_264783_+	hypothetical protein	NA	NA	NA	NA
WP_051146802.1\|264987_265827_-	arginase family protein	NA	NA	NA	NA
WP_020819396.1\|266006_268121_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_082748354.1\|268202_268952_+	DUF1738 domain-containing protein	A0A1V0EBY3	Caulobacter_phage	1.2e-48	50.5
268579:268600	attL	NA	NA	NA	NA
WP_066553252.1\|269109_270459_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_066553254.1\|270455_272243_+	hypothetical protein	NA	NA	NA	NA
WP_066553256.1\|272239_274402_+\|integrase	integrase	NA	NA	NA	NA
274945:274966	attR	NA	NA	NA	NA

DBSCAN-SWA_2

280594 : 338435

uncultured_Caudovirales_phage(33.33%)

integrase,transposase

attL 280483:280542|attR 334141:336649

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
280483:280542	attL	NA	NA	NA	NA
WP_061939592.1\|280594_282109_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_061939590.1\|282095_282824_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	3.8e-31	37.4
WP_100239852.1\|283223_283670_+	hypothetical protein	NA	NA	NA	NA
WP_020819413.1\|283723_284230_+	thermonuclease family protein	NA	NA	NA	NA
WP_020819414.1\|284265_284760_-	hypothetical protein	NA	NA	NA	NA
WP_020819415.1\|284788_285823_+	hypothetical protein	NA	NA	NA	NA
WP_020819416.1\|285884_286529_+	hypothetical protein	NA	NA	NA	NA
WP_048574961.1\|289269_290502_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_053085586.1\|290498_291866_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_048574814.1\|291862_292867_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_145907140.1\|293543_293801_+	hypothetical protein	NA	NA	NA	NA
WP_020819421.1\|293805_293976_+	hypothetical protein	NA	NA	NA	NA
WP_025160949.1\|294074_294341_+	hypothetical protein	NA	NA	NA	NA
WP_020819423.1\|294533_295874_+	hypothetical protein	NA	NA	NA	NA
WP_029986748.1\|296048_296351_+	hypothetical protein	NA	NA	NA	NA
WP_020819425.1\|296414_298559_+	TonB-dependent receptor	NA	NA	NA	NA
WP_020819426.1\|298943_299264_+	energy transducer TonB	NA	NA	NA	NA
WP_020819427.1\|299342_300044_+	VIT family protein	NA	NA	NA	NA
WP_025160951.1\|300124_300850_+	cytochrome b561	NA	NA	NA	NA
WP_020819429.1\|300935_301613_+	response regulator transcription factor	NA	NA	NA	NA
WP_020819430.1\|301609_302626_+	two-component sensor histidine kinase	NA	NA	NA	NA
WP_020819431.1\|302679_303804_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_021224265.1\|303813_306885_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	8.1e-75	25.5
WP_020819433.1\|306877_307177_+	DUF3240 family protein	NA	NA	NA	NA
WP_020819434.1\|307173_308421_+	TolC family protein	NA	NA	NA	NA
WP_020819435.1\|308428_309289_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_025160952.1\|309285_310812_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_020819437.1\|310808_311933_-	ABC transporter permease	NA	NA	NA	NA
WP_021223102.1\|311939_313097_-	ABC transporter permease	NA	NA	NA	NA
WP_020819439.1\|313093_314866_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.7e-19	28.9
WP_020819440.1\|314867_315899_-	secretion protein HlyD	NA	NA	NA	NA
WP_020819441.1\|315895_316504_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_025160953.1\|316735_317080_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020819443.1\|317090_317627_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	3.2e-27	42.6
WP_020819444.1\|317623_318070_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	5.1e-47	70.1
WP_025160954.1\|318083_319157_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_021223100.1\|319153_319936_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.7e-77	67.3
WP_020819447.1\|320348_320774_+	hypothetical protein	G9BWC3	Planktothrix_phage	9.9e-08	27.3
WP_020819448.1\|320973_321471_+	TIR domain-containing protein	NA	NA	NA	NA
WP_021224402.1\|321517_322072_+	TIR domain-containing protein	NA	NA	NA	NA
WP_025160956.1\|322088_322745_-	hypothetical protein	NA	NA	NA	NA
WP_020819451.1\|322747_323908_-	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_020819452.1\|323913_324402_-	TIR domain-containing protein	NA	NA	NA	NA
WP_025160957.1\|324605_325748_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_020819454.1\|325740_327558_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_025160958.1\|327562_329371_+\|integrase	integrase	NA	NA	NA	NA
WP_020819456.1\|329354_329813_+	hypothetical protein	NA	NA	NA	NA
WP_020818778.1\|330515_330869_+	DUF3768 domain-containing protein	NA	NA	NA	NA
WP_066553265.1\|330953_331748_+	ATP-binding protein	NA	NA	NA	NA
WP_061939590.1\|331858_332587_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	3.8e-31	37.4
WP_061939592.1\|332573_334088_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_145907142.1\|333993_334830_+	hypothetical protein	NA	NA	NA	NA
WP_021222964.1\|335046_335475_+	DoxX family protein	NA	NA	NA	NA
WP_062121841.1\|335540_335903_+	dioxygenase	NA	NA	NA	NA
WP_020818758.1\|336120_336930_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.5e-31	33.3
334141:336649	attR	NA	NA	NA	NA
WP_020818759.1\|336929_338435_-\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

399708 : 480321

Escherichia_phage(26.67%)

transposase,integrase

attL 398625:398639|attR 477954:477972

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
398625:398639	attL	NA	NA	NA	NA
WP_020818522.1\|399708_400623_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
398625:398639	attL	NA	NA	NA	NA
WP_021224259.1\|400633_401083_-	hypothetical protein	NA	NA	NA	NA
WP_020818524.1\|401323_401536_-	hypothetical protein	NA	NA	NA	NA
WP_048574958.1\|401703_403935_-	TonB-dependent receptor	NA	NA	NA	NA
WP_020818526.1\|404560_405088_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_025160754.1\|405150_405480_+	hypothetical protein	NA	NA	NA	NA
WP_020818528.1\|405521_405995_+	hypothetical protein	NA	NA	NA	NA
WP_158500939.1\|406117_406957_+	hypothetical protein	NA	NA	NA	NA
WP_020818598.1\|407457_407910_+	hypothetical protein	A0A1P8VVG0	Erythrobacter_phage	3.9e-26	50.4
WP_020818599.1\|407906_408335_+	hypothetical protein	NA	NA	NA	NA
WP_031293519.1\|408561_409935_-	hypothetical protein	NA	NA	NA	NA
WP_013849886.1\|409935_410505_-	recombinase family protein	I1ZBD6	Salisaeta_icosahedral_phage	1.2e-32	44.9
WP_062734670.1\|410645_413615_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	5.6e-198	39.7
WP_020820181.1\|416076_417246_-	ATP-binding protein	NA	NA	NA	NA
WP_013521170.1\|417374_418079_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA
WP_013521171.1\|418075_418690_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_013521172.1\|418753_419548_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_013521173.1\|419549_420266_-	glutathione S-transferase	NA	NA	NA	NA
WP_013521174.1\|420262_421252_-	DMT family transporter	NA	NA	NA	NA
WP_066553272.1\|422645_423533_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_008328818.1\|424099_425647_-\|transposase	IS91-like element ISPps1 family transposase	NA	NA	NA	NA
WP_066553278.1\|426979_427270_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_066553280.1\|427381_428047_-	DoxX family protein	NA	NA	NA	NA
WP_008328818.1\|428301_429849_-\|transposase	IS91-like element ISPps1 family transposase	NA	NA	NA	NA
WP_066553284.1\|430272_430899_-	glutathione S-transferase	NA	NA	NA	NA
WP_066553286.1\|430917_431523_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_066553288.1\|431562_431922_-	hypothetical protein	NA	NA	NA	NA
WP_066553291.1\|432087_433635_-\|transposase	IS91-like element ISPps1 family transposase	NA	NA	NA	NA
WP_021225953.1\|435231_435474_-	hypothetical protein	NA	NA	NA	NA
WP_020820182.1\|435470_436136_-	3-oxoacid CoA-transferase subunit B	NA	NA	NA	NA
WP_020820183.1\|436140_436839_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA
WP_020820184.1\|436838_437540_-	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_157838174.1\|437536_438676_-	TfdD	NA	NA	NA	NA
WP_020820186.1\|438687_439761_-	maleylacetate reductase	NA	NA	NA	NA
WP_020820187.1\|439772_440108_-	hypothetical protein	NA	NA	NA	NA
WP_082748360.1\|440040_440664_-	winged helix DNA-binding protein	NA	NA	NA	NA
WP_020820189.1\|440805_441438_+	glutathione S-transferase	NA	NA	NA	NA
WP_020820190.1\|441434_442049_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_020820191.1\|442090_443059_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_020820192.1\|443065_443704_+	glutathione S-transferase	NA	NA	NA	NA
WP_062121849.1\|443700_444858_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_066553298.1\|444862_445984_-	hypothetical protein	NA	NA	NA	NA
WP_066046204.1\|445980_446622_-	recombinase family protein	A0A0C4UR34	Shigella_phage	9.3e-34	47.2
WP_061939592.1\|452130_453645_+\|transposase	IS21 family transposase	NA	NA	NA	NA
453233:453247	attR	NA	NA	NA	NA
WP_061939590.1\|453631_454360_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	3.8e-31	37.4
453233:453247	attR	NA	NA	NA	NA
WP_066553301.1\|454470_455292_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_030092864.1\|455438_455819_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_008831331.1\|455943_456339_+	hypothetical protein	NA	NA	NA	NA
WP_008831330.1\|456335_457304_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_008831329.1\|457300_457921_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_008831328.1\|457927_458380_-	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_008831327.1\|458376_458595_-	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_008831326.1\|458741_458969_+	hypothetical protein	NA	NA	NA	NA
WP_008831325.1\|458940_459147_-	hypothetical protein	NA	NA	NA	NA
WP_015449421.1\|459159_459321_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_007685989.1\|459372_459792_-	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	4.5e-13	48.0
WP_007685988.1\|459827_460148_-	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_007685985.1\|460116_460398_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_066553303.1\|460859_461453_+	transcription elongation protein SprT	A0A193GYF0	Enterobacter_phage	1.6e-35	41.4
WP_007686145.1\|461579_462233_+	AAA family ATPase	D4HTX7	Vibrio_phage	1.1e-18	29.0
WP_007686146.1\|462229_462544_+	hypothetical protein	NA	NA	NA	NA
WP_145907148.1\|462607_463606_-	replication initiator protein A	A0A0K1LLD0	Rhodobacter_phage	3.6e-56	40.1
WP_001389365.1\|464095_464860_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_007687863.1\|465353_465557_-	hypothetical protein	NA	NA	NA	NA
WP_001389365.1\|467495_468260_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_007682395.1\|468536_468899_-	hypothetical protein	NA	NA	NA	NA
WP_007682394.1\|468898_469585_-	EthD domain-containing protein	NA	NA	NA	NA
WP_015460611.1\|469606_470359_-	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	1.7e-10	26.3
WP_001389365.1\|471729_472494_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_066561249.1\|473255_474269_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_081440685.1\|474374_475043_+	EthD domain-containing protein	NA	NA	NA	NA
WP_145907151.1\|474987_475281_-	hypothetical protein	NA	NA	NA	NA
WP_007682041.1\|475463_476138_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_007015766.1\|476306_477665_-	hypothetical protein	NA	NA	NA	NA
WP_026109404.1\|477661_478267_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	2.7e-35	46.6
WP_001389365.1\|479556_480321_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7

DBSCAN-SWA_4

705641 : 718331

Aureococcus_anophage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066553899.1\|705641_709955_-	methylase	A0A076FMQ0	Aureococcus_anophage	1.7e-14	25.7
WP_066553901.1\|710144_710420_+	HU family DNA-binding protein	B5TA87	Burkholderia_phage	3.9e-13	46.7
WP_066561338.1\|710462_711107_-	antitoxin of toxin-antitoxin stability system	K4JU95	Caulobacter_phage	4.5e-20	33.2
WP_066553904.1\|711099_711516_-	hypothetical protein	NA	NA	NA	NA
WP_066553909.1\|711605_711824_-	hypothetical protein	NA	NA	NA	NA
WP_066553912.1\|711883_714025_-	ParB N-terminal domain-containing protein	G8DH78	Emiliania_huxleyi_virus	1.6e-29	28.0
WP_066553916.1\|714157_715351_-	hypothetical protein	A0A1V0DX75	Synechococcus_virus	1.4e-78	44.9
WP_066553919.1\|715577_718331_+	class I SAM-dependent DNA methyltransferase	Q6NE04	Leptospira_phage	3.3e-120	34.4

DBSCAN-SWA_5

780171 : 838662

uncultured_Mediterranean_phage(21.43%)

transposase,integrase

attL 786181:786198|attR 845248:845264

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066554049.1\|780171_781458_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q8W6M6	Sinorhizobium_phage	1.3e-98	45.8
WP_066554051.1\|781513_782170_-	lytic transglycosylase domain-containing protein	A0A0H3V0Q1	Geobacillus_virus	4.9e-22	51.8
WP_006954973.1\|782466_783681_+\|transposase	IS256-like element ISSpma2 family transposase	A0A220NQR7	Corynebacterium_phage	3.2e-99	47.9
WP_066554061.1\|783774_784623_+	virulence protein	A0A0H5AWB1	Pseudomonas_phage	2.5e-10	30.6
WP_066554064.1\|784698_786915_+	methylase	A0A1Y0T2N3	Pseudomonas_phage	1.7e-10	27.6
786181:786198	attL	NA	NA	NA	NA
WP_009823939.1\|786959_787964_-\|integrase	site-specific integrase	NA	NA	NA	NA
786181:786198	attL	NA	NA	NA	NA
WP_009823940.1\|787960_789316_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_015449381.1\|789312_790545_-\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJ76	Virus_Rctr85	3.5e-05	26.8
WP_066554069.1\|791147_792695_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_082748754.1\|793090_793567_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_066554070.1\|794610_795447_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_066554072.1\|795532_796369_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_066554074.1\|796911_798747_+	methylase	A0A076FMQ0	Aureococcus_anophage	8.1e-14	30.7
797521:797538	attR	NA	NA	NA	NA
WP_066554077.1\|798809_799223_+	DUF2384 domain-containing protein	NA	NA	NA	NA
797521:797538	attR	NA	NA	NA	NA
WP_066554081.1\|799219_799954_+	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_066554084.1\|800025_800532_-	hypothetical protein	NA	NA	NA	NA
WP_066554087.1\|800915_802085_+	hypothetical protein	NA	NA	NA	NA
WP_066554096.1\|802081_802594_+	hypothetical protein	NA	NA	NA	NA
WP_066554099.1\|802593_804567_+	DUF3732 domain-containing protein	NA	NA	NA	NA
WP_145907178.1\|804792_805530_-	hypothetical protein	NA	NA	NA	NA
WP_066554101.1\|805520_806876_-	hypothetical protein	NA	NA	NA	NA
WP_066554108.1\|807138_809127_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_066554111.1\|810003_810996_-\|integrase	site-specific integrase	A0A142F1N9	Bacillus_phage	6.3e-21	26.9
WP_066554113.1\|810992_811934_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_066554115.1\|811930_813148_-\|integrase	tyrosine-type recombinase/integrase	W8EHC2	Mycobacterium_phage	5.0e-12	29.0
WP_066554117.1\|813247_813895_+	hypothetical protein	NA	NA	NA	NA
WP_066554124.1\|813899_814334_+	hypothetical protein	NA	NA	NA	NA
WP_066554126.1\|814768_816160_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_066554128.1\|816156_817944_+	hypothetical protein	NA	NA	NA	NA
WP_066554134.1\|817940_820166_+\|integrase	integrase	NA	NA	NA	NA
WP_066554136.1\|820210_821113_+	DUF1738 domain-containing protein	A0A1B1IWW8	uncultured_Mediterranean_phage	5.9e-34	35.9
WP_082748411.1\|821109_821406_+	antirestriction protein ArdC	A0A1B1IWW8	uncultured_Mediterranean_phage	1.1e-05	44.6
WP_066554144.1\|821417_821840_+	hypothetical protein	NA	NA	NA	NA
WP_066554145.1\|822144_823098_+	DUF2493 domain-containing protein	NA	NA	NA	NA
WP_066554146.1\|823220_823682_+	hypothetical protein	NA	NA	NA	NA
WP_066554149.1\|823692_824121_+	hypothetical protein	A0A1B1IUL8	uncultured_Mediterranean_phage	2.8e-34	62.1
WP_007688363.1\|824423_824813_+	single-stranded DNA-binding protein	A0A1P8L6D9	Staphylococcus_phage	8.5e-14	35.5
WP_066554152.1\|824928_825297_-	hypothetical protein	NA	NA	NA	NA
WP_066554157.1\|825482_825719_+	hypothetical protein	NA	NA	NA	NA
WP_066554159.1\|825821_826016_-	hypothetical protein	NA	NA	NA	NA
WP_066554166.1\|826455_826788_+	hypothetical protein	NA	NA	NA	NA
WP_066554168.1\|826777_829174_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_066554174.1\|829211_832139_+	conjugative relaxase	NA	NA	NA	NA
WP_030092562.1\|832209_832449_+	hypothetical protein	NA	NA	NA	NA
WP_066554176.1\|832473_832671_-	hypothetical protein	NA	NA	NA	NA
WP_066561351.1\|832670_832976_-	hypothetical protein	NA	NA	NA	NA
WP_007688341.1\|833410_834052_-	helix-turn-helix transcriptional regulator	A5X9F5	Aeromonas_virus	1.3e-19	39.4
WP_066554183.1\|834460_835357_+	WYL domain-containing protein	NA	NA	NA	NA
WP_066554185.1\|835349_835808_+	BREX-3 system P-loop-containing protein BrxF	NA	NA	NA	NA
WP_066554198.1\|837147_838662_+\|transposase	IS21 family transposase	NA	NA	NA	NA
845248:845264	attR	NA	NA	NA	NA

DBSCAN-SWA_6

875588 : 933364

Corynebacterium_phage(22.22%)

protease,integrase,transposase

attL 918946:918962|attR 939833:939849

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066554198.1\|875588_877103_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_006954973.1\|877158_878373_-\|transposase	IS256-like element ISSpma2 family transposase	A0A220NQR7	Corynebacterium_phage	3.2e-99	47.9
WP_066554269.1\|879098_879680_-	radical SAM protein	NA	NA	NA	NA
WP_082748417.1\|879676_881518_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A2L0V0F4	Agrobacterium_phage	4.1e-42	39.9
WP_066554273.1\|881514_882708_-	hypothetical protein	NA	NA	NA	NA
WP_158511724.1\|882704_884474_-	hypothetical protein	NA	NA	NA	NA
WP_145907184.1\|884581_889462_-	AAA family ATPase	NA	NA	NA	NA
WP_066554281.1\|889614_890046_-	hypothetical protein	NA	NA	NA	NA
WP_066554284.1\|890346_890775_+	DUF3293 domain-containing protein	NA	NA	NA	NA
WP_066554286.1\|890881_892084_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.2e-95	50.4
WP_145907468.1\|892467_893319_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	1.0e-43	53.8
WP_006954973.1\|893668_894883_+\|transposase	IS256-like element ISSpma2 family transposase	A0A220NQR7	Corynebacterium_phage	3.2e-99	47.9
WP_066554292.1\|895843_898681_-	TonB-dependent receptor	NA	NA	NA	NA
WP_066554293.1\|898925_900350_-	family 43 glycosylhydrolase	NA	NA	NA	NA
WP_082748423.1\|900443_901457_-	arabinan endo-1,5-alpha-L-arabinosidase	NA	NA	NA	NA
WP_066554295.1\|901616_903179_-	alpha-N-arabinofuranosidase	NA	NA	NA	NA
WP_066554297.1\|903196_904123_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_066554298.1\|904127_905120_-	FAH family protein	NA	NA	NA	NA
WP_066561357.1\|905453_906134_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_066554299.1\|906231_907536_-	sugar MFS transporter	NA	NA	NA	NA
WP_145907186.1\|907711_908809_+	galactose-1-epimerase	NA	NA	NA	NA
WP_066554304.1\|908819_909677_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_066554307.1\|909740_910046_-	hypothetical protein	NA	NA	NA	NA
WP_066554310.1\|910110_911100_-	LacI family transcriptional regulator	C6ZCU4	Enterobacteria_phage	4.5e-35	33.7
WP_066554315.1\|911803_912745_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	1.3e-28	35.9
WP_066561358.1\|912759_914052_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_066554316.1\|914196_914895_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.6e-26	35.1
WP_066554317.1\|914891_915293_-	PDZ domain-containing protein	NA	NA	NA	NA
WP_066554319.1\|915366_915651_-	hypothetical protein	NA	NA	NA	NA
WP_066554325.1\|915748_919078_-	glycosyltransferase	NA	NA	NA	NA
918946:918962	attL	NA	NA	NA	NA
WP_066554327.1\|919299_919479_+	hypothetical protein	NA	NA	NA	NA
WP_066554329.1\|919582_920176_+	nitroreductase family protein	NA	NA	NA	NA
WP_066554337.1\|920301_921036_-	anti-sigma factor	NA	NA	NA	NA
WP_066561363.1\|921028_921550_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_082748425.1\|921560_922802_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_066561367.1\|923174_923909_+	type IV secretion system protein VirJ	NA	NA	NA	NA
WP_066554341.1\|923952_924384_+	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_145907471.1\|924545_925802_+	virulence factor family protein	NA	NA	NA	NA
WP_140404649.1\|928568_929177_-	hypothetical protein	NA	NA	NA	NA
WP_007688625.1\|929282_929627_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_066554347.1\|929747_930950_+	cardiolipin synthase B	NA	NA	NA	NA
WP_066554352.1\|931262_932165_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	2.2e-25	29.1
WP_066554355.1\|932170_933364_+\|transposase	IS91 family transposase	NA	NA	NA	NA
939833:939849	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1462826 : 1479921

Staphylococcus_phage(14.29%)

portal,capsid,head,protease,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066555576.1\|1462826_1463558_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_087575270.1\|1463735_1463915_-	hypothetical protein	NA	NA	NA	NA
WP_066561479.1\|1464052_1464553_-	hypothetical protein	NA	NA	NA	NA
WP_066555579.1\|1464571_1465780_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	8.0e-95	47.8
WP_066555581.1\|1465838_1467443_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_066555583.1\|1467454_1468090_-	DedA family protein	NA	NA	NA	NA
WP_066555588.1\|1468117_1468624_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_066555590.1\|1468713_1468956_+	hypothetical protein	NA	NA	NA	NA
WP_066555592.1\|1469075_1469786_+	hypothetical protein	NA	NA	NA	NA
WP_066561480.1\|1469866_1470514_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_066561481.1\|1470661_1471234_+	hypothetical protein	NA	NA	NA	NA
WP_066555598.1\|1471359_1471806_-	acetyltransferase	NA	NA	NA	NA
WP_066555600.1\|1471869_1473186_+	DNA-packaging protein	A0A1V0DY66	Dinoroseobacter_phage	6.7e-71	41.2
WP_066561483.1\|1473273_1473612_+	hypothetical protein	NA	NA	NA	NA
WP_066555602.1\|1473715_1474846_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	3.7e-49	34.7
WP_066555604.1\|1474869_1475190_+	hypothetical protein	K4I011	Acidithiobacillus_phage	2.7e-10	43.7
WP_066555606.1\|1475182_1475602_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	9.8e-16	41.9
WP_066555608.1\|1475698_1476811_+\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	9.7e-79	43.9
WP_066555609.1\|1476935_1477421_+	hypothetical protein	NA	NA	NA	NA
WP_082748471.1\|1477387_1477609_+	hypothetical protein	NA	NA	NA	NA
WP_066555614.1\|1477605_1478001_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_066555616.1\|1478004_1478328_-	hypothetical protein	NA	NA	NA	NA
WP_066555617.1\|1478386_1478794_+\|tail	phage tail protein	NA	NA	NA	NA
WP_066555621.1\|1478790_1479102_+	gene transfer agent family protein	NA	NA	NA	NA
WP_066555623.1\|1479098_1479335_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_066555624.1\|1479378_1479921_+\|tail	tail tape measure protein	D6PEW0	uncultured_phage	1.8e-09	35.5

DBSCAN-SWA_8

3373024 : 3378701

uncultured_Mediterranean_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066561911.1\|3373024_3374020_-	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	9.0e-52	41.0
WP_066559406.1\|3374248_3375166_+	cell wall hydrolase	A0A1B0UXM4	Roseobacter_phage	1.4e-19	42.1
WP_025546951.1\|3375555_3375684_+	entericidin A/B family lipoprotein	NA	NA	NA	NA
WP_066559409.1\|3375721_3376498_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.4e-44	41.4
WP_066559412.1\|3376494_3376929_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_066559414.1\|3376958_3377210_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	9.3e-06	72.2
WP_066559416.1\|3377328_3377922_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	4.7e-40	44.1
WP_066559418.1\|3377918_3378701_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	6.2e-32	33.6

DBSCAN-SWA_9

3480891 : 3511062

Ralstonia_phage(50.0%)

integrase,transposase

attL 3494406:3494437|attR 3498200:3498231

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013039223.1\|3480891_3482262_-\|transposase	IS1380-like element ISSp1 family transposase	NA	NA	NA	NA
WP_066559647.1\|3482319_3482712_-	hypothetical protein	NA	NA	NA	NA
WP_082748664.1\|3483010_3484963_-	ATP-binding protein	NA	NA	NA	NA
WP_066559656.1\|3485273_3485747_+	hypothetical protein	NA	NA	NA	NA
WP_082748666.1\|3485749_3486040_+	excalibur calcium-binding domain-containing protein	NA	NA	NA	NA
WP_066559659.1\|3486039_3486240_+	hypothetical protein	NA	NA	NA	NA
WP_066559666.1\|3486236_3486425_+	hypothetical protein	NA	NA	NA	NA
WP_082748668.1\|3486428_3486914_-	thermonuclease family protein	NA	NA	NA	NA
WP_066559675.1\|3486949_3487549_-	hypothetical protein	NA	NA	NA	NA
WP_082748930.1\|3487558_3487810_-	hypothetical protein	NA	NA	NA	NA
WP_066559686.1\|3488252_3488444_-	hypothetical protein	NA	NA	NA	NA
WP_145907382.1\|3488658_3488949_-	hypothetical protein	NA	NA	NA	NA
WP_066561932.1\|3489037_3490198_-\|integrase	site-specific integrase	A0A221SAN4	Ralstonia_phage	3.4e-34	30.3
WP_066559692.1\|3490493_3491759_-	hypothetical protein	A0A088FVF8	Escherichia_phage	1.8e-84	43.4
WP_145907385.1\|3491764_3492109_-	hypothetical protein	NA	NA	NA	NA
WP_145907388.1\|3492228_3492561_-	hypothetical protein	NA	NA	NA	NA
WP_066559698.1\|3492951_3493188_-	hypothetical protein	NA	NA	NA	NA
WP_145907392.1\|3493178_3493394_-	hypothetical protein	NA	NA	NA	NA
3494406:3494437	attL	NA	NA	NA	NA
WP_048574961.1\|3494546_3495779_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_053085586.1\|3495775_3497143_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_048574814.1\|3497139_3498144_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_066559708.1\|3498598_3498829_+	hypothetical protein	NA	NA	NA	NA
3498200:3498231	attR	NA	NA	NA	NA
WP_066559711.1\|3498923_3499322_-	hypothetical protein	NA	NA	NA	NA
WP_066559714.1\|3499394_3499586_-	hypothetical protein	NA	NA	NA	NA
WP_082748670.1\|3499627_3500245_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_158511754.1\|3500740_3502483_+	hypothetical protein	NA	NA	NA	NA
WP_066559719.1\|3502597_3503242_+	UPF0149 family protein	NA	NA	NA	NA
WP_145907398.1\|3503670_3504069_+	hypothetical protein	NA	NA	NA	NA
WP_145907401.1\|3504074_3505232_+	hypothetical protein	NA	NA	NA	NA
WP_145907404.1\|3505344_3505683_-	hypothetical protein	NA	NA	NA	NA
WP_145907407.1\|3505943_3506390_+	hypothetical protein	NA	NA	NA	NA
WP_145907410.1\|3506389_3506683_+	excalibur calcium-binding domain-containing protein	NA	NA	NA	NA
WP_066559723.1\|3506682_3506883_+	hypothetical protein	NA	NA	NA	NA
WP_066559737.1\|3507128_3507728_-	hypothetical protein	NA	NA	NA	NA
WP_082748934.1\|3507736_3507988_-	hypothetical protein	NA	NA	NA	NA
WP_082748674.1\|3508103_3508427_-	hypothetical protein	NA	NA	NA	NA
WP_066559741.1\|3508430_3508622_-	hypothetical protein	NA	NA	NA	NA
WP_066559743.1\|3509452_3509773_-	hypothetical protein	NA	NA	NA	NA
WP_066561936.1\|3510030_3511062_-\|transposase	IS110 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP005087

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP005087_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP005087_1

20291-20380

Orphan

Consensus_repeat	Method
GACTCGACCCCAAAACTCACTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP005087_1

>merge|NZ_CP005087|1|20291-20380|CRISPRCasFinder
GACTCGACCCCAAAACTCACTTTTACCGACCCCAAAACTCACCGAAGGCTACCCCAACACTCACGCGACTCGACCCCAAAACTCACTTTT

>NZ_CP005087|1|1|20291-20380|CRISPRCasFinder
GACTCGACCCCAAAACTCACTTTT	ACCGACCCCAAAACTCACCGAAGGCTACCCCAACACTCACGC
GACTCGACCCCAAAACTCACTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP005087.1\|WP_066564812.1\|34951_35842_+\|haloalkane-dehalogenase	unknown	unknown	gnl\|CDD\|235135
NZ_CP005087.1\|WP_015460623.1\|29544_32679_+\|Ti-type-conjugative-transfer-relaxase-TraA	unknown	unknown	gnl\|CDD\|237546
NZ_CP005087.1\|WP_015460618.1\|19262_20174_-\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP005087.1\|WP_066564807.1\|16430_17381_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005087.1\|WP_006961816.1\|26291_27158_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP005087.1\|WP_015449228.1\|22725_24243_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP005087.1\|WP_007682112.1\|34611_34866_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005087.1\|WP_015460630.1\|32686_33409_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005087.1\|WP_015460622.1\|29066_29372_-\|conjugal-transfer-protein-TraD	unknown	unknown	gnl\|CDD\|368890
NZ_CP005087.1\|WP_015460621.1\|28804_29029_-\|conjugal-transfer-protein-TraD	unknown	unknown	gnl\|CDD\|368890
NZ_CP005087.1\|WP_015449229.1\|22010_22739_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_CP005087.1\|WP_015460616.1\|18263_18899_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|222854
NZ_CP005087.1\|WP_025547078.1\|12190_12532_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005087.1\|WP_025547075.1\|9743_10505_+\|damage-inducible-protein	unknown	unknown	gnl\|CDD\|226918
NZ_CP005087.1\|WP_015460617.1\|18924_19206_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005087.1\|WP_001389365.1\|17399_18164_-\|IS6-like-element-IS6100-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP005087.1\|WP_162195970.1\|12003_12165_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005087.1\|WP_025547079.1\|12789_16056_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235553
NZ_CP005087.1\|WP_001389365.1\|33818_34583_-\|IS6-like-element-IS6100-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP005087.1\|WP_025547077.1\|10419_11940_+\|DNA-polymerase-Y-family-protein	unknown	unknown	gnl\|CDD\|176458

Protein	Function_ID	Function_description	E-value
NZ_CP005087.1\|WP_066564812.1\|34951_35842_+\|haloalkane-dehalogenase	gnl\|CDD\|235135	PRK03592, PRK03592, haloalkane dehalogenase; Provisional.	2.35439e-170
NZ_CP005087.1\|WP_015460618.1\|19262_20174_-\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	1.07935e-25
NZ_CP005087.1\|WP_015449228.1\|22725_24243_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.03875e-16
NZ_CP005087.1\|WP_006961816.1\|26291_27158_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	1.26226e-44
NZ_CP005087.1\|WP_001389365.1\|33818_34583_-\|IS6-like-element-IS6100-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.97603e-67
NZ_CP005087.1\|WP_015460622.1\|29066_29372_-\|conjugal-transfer-protein-TraD	gnl\|CDD\|368890	pfam06412, TraD, Conjugal transfer protein TraD. This family contains bacterial TraD conjugal transfer proteins. Mutations in the TraD gene result in loss of transfer.	8.00175e-11
NZ_CP005087.1\|WP_015460621.1\|28804_29029_-\|conjugal-transfer-protein-TraD	gnl\|CDD\|368890	pfam06412, TraD, Conjugal transfer protein TraD. This family contains bacterial TraD conjugal transfer proteins. Mutations in the TraD gene result in loss of transfer.	6.89947e-14
NZ_CP005087.1\|WP_015449229.1\|22010_22739_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	3.60063e-54
NZ_CP005087.1\|WP_015460616.1\|18263_18899_+\|AAA-family-ATPase	gnl\|CDD\|222854	PHA02518, PHA02518, ParA-like protein; Provisional.	3.43275e-46
NZ_CP005087.1\|WP_025547075.1\|9743_10505_+\|damage-inducible-protein	gnl\|CDD\|226918	COG4544, COG4544, Uncharacterized conserved protein [Function unknown].	1.5913e-75
NZ_CP005087.1\|WP_001389365.1\|17399_18164_-\|IS6-like-element-IS6100-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.97603e-67
NZ_CP005087.1\|WP_015460623.1\|29544_32679_+\|Ti-type-conjugative-transfer-relaxase-TraA	gnl\|CDD\|237546	PRK13889, PRK13889, conjugal transfer relaxase TraA; Provisional.	0
NZ_CP005087.1\|WP_025547079.1\|12789_16056_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235553	PRK05672, dnaE2, error-prone DNA polymerase; Validated.	0
NZ_CP005087.1\|WP_025547077.1\|10419_11940_+\|DNA-polymerase-Y-family-protein	gnl\|CDD\|176458	cd03468, PolY_like, DNA Polymerase Y-family. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in order to access the lesion. Because of their high error rates, TLS polymerases are potential targets for cancer treatment and prevention.	1.11248e-58

>NZ_CP005087.1|WP_015460618.1|19262_20174_-|replication-initiation-protein
MTRASSPVNNGKAKIALGDDTALTLSQKGRGNPFDPANYGEIVKPGELVDIVELSPLTLADRRIYNLLIANAWERISEPVIHRIAKTALKGTHQGNERIESSLLRLMGTIAIVTIRKGGKSYKRRVQLLGSSDESLEKDGFLHYRIPEELIEILRNSEVYARLKTQVMYCFESKYALCLYEMIERRIGLEYKQSEEFTIAELRGLLNVPEGKLERFADFNKYCLKVAQEEINKLCPFWVEFTPIKKGRKVERVSMMWLPKTMSGRRDAQNLIDQHSIVRRAKLRGDIPEMPVLVDFSAPAAQR
>NZ_CP005087.1|WP_015460617.1|18924_19206_+|hypothetical-protein
MAIARKPNSKPKSPMDEAAADAFIAGAAKPKAEPIATEADEAGQGAEPRKSPVMLRFDRALLAKVDAAAKRRGISRSAWIQFTVSRALDAGEG
>NZ_CP005087.1|WP_015460616.1|18263_18899_+|AAA-family-ATPase
MILAVGNTKGGVGKTTLAVNLAVARALAGRDLLLVDGDEQGTALTFTELRADRLGQAGYTAVALTGAALRSQVRQLAAKYDDIIIDVGGRDTGSLRAALTVADTLLVPVQPRSFDVWALDQVAALVAEAREINEGLRAVAVLNGADAQGADNEAALEMIGDIEGIEVLPTSIVRRKAFPNAAAEGRAVGEQSPRDAKAIDELAALVSAVFV
>NZ_CP005087.1|WP_001389365.1|17399_18164_-|IS6-like-element-IS6100-family-transposase
MTDFKWRHFQGDVILWAVRWYCRYPISYRDLEEMLAERGISVDHTTIYRWVQCYAPEMEKRLRWFWRRGFDPSWRLDETYVKVRGKWTYLYRAVDKRGDTIDFYLSPTRSAKAAKRFLGKALRGLKHWEKPATLNTDKAPSYGAAITELKREGKLDRETAHRQVKYLNNVIEADHGKLKILIKPVRGFKSIPTAYATIKGFEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHFAAAA
>NZ_CP005087.1|WP_066564807.1|16430_17381_+|hypothetical-protein
MLQIGDLHLPSAARTERSVDQKDRTFSVELRNVISRQPIKTVFKRIYRMCEAEEIDGILLMGDMTDFGKLDGYRAGAAYVANALQLGKGRRNALTFCGIVPGNHDIDRNLAKKPSMTAKFGPLNAALSAVGLEQIPVEQSLIRHVGPSDATCAVVLMNSCWGCGAVEYIPAEFRDSVGPAIEAAIAAGDPKVLSAYYDRQFDTPAFSDNSIAHLVETAGKMPREEQLVVVAHHNLLPQRMTRLAPYTELVNSGAVRASLMEAGRPILYLHGHIHTDPVEVLSVPGGDALVCISAPAAEDGFNIIEGSVAKIGGSQR
>NZ_CP005087.1|WP_025547079.1|12789_16056_+|DNA-polymerase-III-subunit-alpha
MRYAELQCASHFSFLRGASSCEELFTQAEACGLDALAITDRNSLAGIVRAHEAAKVTGVRLIVGCRLDLAEGQSLLVYPIDRSGYAHLCRLLSRGKKRGGKGKCIIGWDDVADFAEGLLAILLPGEVEEAQAVISRFARIFAGRGYLALTLRRRPGDQLRLHNLSNLAARHAVPTVITGDVLYHHPHRRVLQEVMTCTRHRCTIDELGARRELYADRYLMPAAEMHRLYGRYPQALARTLEIADRCRFSLDELKYQYPEEASITGLTPQAALEQMSWEAAKVRYPEGVPDKVARLLRHELGLIAELGYAPYFLTVNSIVRFARSRDILCQGRGSAANSAVCYVLGITSIDPERSDLLFERFISQERKEPPDIDVDFEHERREIVMQWVFDTYGRDHSALCSTVIRYRAKGAIKDVGKALGLSEDLIKALSGQVWGWSEEGVQERHAEELNLNLSDRRLRLALDLARELIGTPRHLSQHPGGFVLTHDRLDELVPIEPAAMADRQVIEWDKDDIDALKFMKVDCLALGMLTAMKRGFDFLEQHKGIRMDLASIPPEDPRTYAMIRAADTLGAFQIESRAQMAMLPHIKPRTFYDLVIEVAIVRPGPIQGDMVHPYLRRRAGKEKVEYPKPELEKVLGKTLGVPLFQEQAMRVAIECAGFTASEADQLRRAMATFKFTGGVSKFKEKLVSGMVERGYTAEFAEKTFGQLEGFGSYGFPESHAASFALIAYASCWLKCWHPEIFCASLLNAQPMGFYAPAQIVADARAHRVEVRPVCINASRWDCTLEPADGDRFAVRLGMRMVTGLKEADAARIIVARADEPFVSVEELWRRVGVGIGSLNRLAEADAFRGSMRLARREALWAIKALRDEQLPLFAAADARENGLVQEIVEQPVALRPMSEGREVVEDYGHVGLTLRQHPVSFLREELLRQKMVPCSALDRTKDGRYIWLAGLVLVRQRPGSAKGVMFITIEDESGIANLIIWPRMFEQNRRIVMGARMMGLYGQVQREGEVVHVIAKKLIDLSPLLGSLGQRWEAGPSSLGPDDRALSHVGPDTGAVLAGPPNPRDILVRDLHIDQVRDRPLIKSRNFH
>NZ_CP005087.1|WP_025547078.1|12190_12532_+|hypothetical-protein
MMRAVEIAVPALPLLAILMLMGSSAAQAVDHHKALRVVCAQGRSFGLRIEGRQAHVQLADSELVLVRKPSSLGQHFRNGDATLILDDDYVAFVQRGDWGWQDCHIDQPSGSDR
>NZ_CP005087.1|WP_162195970.1|12003_12165_+|hypothetical-protein
MKDQILRATERAPQWLRNDLASKDAGVRAQAEEILATTIANALANGTGAPAED
>NZ_CP005087.1|WP_025547077.1|10419_11940_+|DNA-polymerase-Y-family-protein
MRQVVSLFLPTWPTDRLRRRLGRNAPPPDAALVLVGMEGNRRVLTAANAAARAIGLHAGMAATQAQALVPDLLIMDADLEADRQALERLAIWSLRRYAPIIALDPPDGLMLDITGADHAHGGAMGVLRDILKRLAEVETAGRAVCAPAYGAAHALARYGADPFRVVDPLELADAIGDLPLAALRLDRATIMSLSKLGLETIADLEAMPRASLALRFGSKPGQRLDQAYGRASEPFEPIAAPERIEVERRFAEPIGAPETLARYTHKLVDQLCQQLEEAGVGARRLDLRFHRVDNGIEAIRAGLARPSRDRKQMGRLLCDRIETVDPGFGVERMLLAAPAVEPLRFRTISNLGDVPVPDVAALVDILGNRVGEERLYRYAARESDIPERSVTRIAPMADPTLLRWPERWPRPARLFARPEPIDTMALLPDHPPVHFIWRGIRRRVKRADGPERIYGEWHMSEAEWLSVRDYFLLEDETGARYWVFRQGDGMDSATGGQGWFLHGLFG
>NZ_CP005087.1|WP_025547075.1|9743_10505_+|damage-inducible-protein
MTERGARPHVAALRAKIAEIEGGDRRARSVLPFGIEVIDSKLPGGGLALGALHEVAGGAQGATDGAAAALFAAGIVGRISGSILWCMTQADLFAPAIAQAGLDPDRVIYVEARDETALLSCFEEGLRHGGLGGVVAEVARLSMTASRRLQLAAESTGTIGIAVRRWRRSAEASDLGQPTAAATRWRVTAVPSELLPVPGVGRHRWFVELIRCRAGESADFLVEACDATGCLALPADLADRSAASQAWAERAAS
>NZ_CP005087.1|WP_015449229.1|22010_22739_-|ATP-binding-protein
MQRHEMLAALKGLGLKGMIAAFDDAVTNGIRRDRTAMEMLGDLLRAETAHREAASIRYRMTAARLPAIKDLDGFVFADTPINESLVRSLHAGSFLPERRNIVLVGGTGTGKTHLALAITAAVVRAGARGRFFNTVDLVNRLEEETRQAKAGSLAAQMARLDVVVLDELGYLPFARSGGQMLFHLISKLYEKTSVIITTNLAFGEWPSVFQDAKMTTALLDRVTHHCDIIETGNDSWRFKNRS
>NZ_CP005087.1|WP_015449228.1|22725_24243_-|IS21-family-transposase
MLIVETIAKIRREHRDGKPIKEIARDLRLSRNTVRKAIRAPEADFSYERKEQHRPQTGPFRERLDELLAENEERPRRERLRLTRIHDLLEREGFTGSYDAVRRYAARWKQERHAGGSGDMSKVFIPLMFRPGEAYQFDWSHEDVEIAGKPMRVKVAHMRLCWSRAPFVRAYPRETQEMVFDAHARGFAFLGGVPTRGIYDNMKTAVTTVFTGKERVFNRRFLIMTDHYGVEPVACSPAAGWEKGQVENQVQTGRERLFKPRLRFASMEELNAWLEAECRRWAERYAHPDMEDMTIAQALEMERPSLQPLTTPFDGFFESEHVASSTCLVSFDRNRYSVMAVAARHAVQLRAYADRVVIRCAGKVVAEHARLFGRNQTKFDPWHYLPVLIRKPGALRNGAPFQDWDLPPALAQLRRKLGKSDDADRRFVRVLAAVPEDGLEAVEAAVREAMAAGTANDEVILNILSRRREPQPVQAINVVVDLRLKHPPIADCARYDTVRGLNAAA
>NZ_CP005087.1|WP_006961816.1|26291_27158_+|recombinase-family-protein
MTRVGYARVSTIDQDLDIQVARLKAAGCEILRSETGSGASRTGRTELETIMQFLRADDELVVLRLDRLGRSTRDVLNLVHELDQKGASLRVLEPEVTTAGSMGRMVITILGMVADMELTFIKDRQRAGIEAARAEGVYKGRKKNIDDDEIRRRITAGASKASVARDLKISRMTVYRALDVIPSRIGLPEKPPSVTIALHLTIENFNKHGRGRKPARERIEAMLERDYQMQKTGNCDYTLTVAYDQGADGVSLDDEIASLQTEMFNIAESYRCSIETDVYEIGGQERAW
>NZ_CP005087.1|WP_015460621.1|28804_29029_-|conjugal-transfer-protein-TraD
MARRERTRHLIELGGLVQKAGLVELADDDRATLYGALLDCTARVQGDDAGNVLALWKRRGKRAFDAEAEGAGNG
>NZ_CP005087.1|WP_015460622.1|29066_29372_-|conjugal-transfer-protein-TraD
MRKVRDYDAELRALNDKAKALKARKVQQLGELVTSTGADALDLDTLAGALLAAVEAADANEKEAWRSRGAAFFQGRGRKAGRRTGGNGEGARQTGAGKEQA
>NZ_CP005087.1|WP_015460623.1|29544_32679_+|Ti-type-conjugative-transfer-relaxase-TraA
MAIYHFSAKVISRANGSSAVASAAYRAAERLHDDRLGRDHDFSNKAGVVHSEILAPEGAPERLNDRATLWNEVEAGEKRKDAQLAREVEFSIPRELNQQQGIQLARDFVEKQFVERGMVADMNVHWDMGKDGQPKPHAHVMLSMREVGPEGFGQKVREWNSTALLQEWRVAWADHVNERLAELDIDARIDHRTLEAQGIDLEPQHKIGPAASRMPEQGLEAERVEDHARIARENGEKIIARPEIALDAIARQQATFTRRDLAQFAFRHSDGKDQFDQVMSAVRSSPELVALGRDGKGEDRFTSRDMIAAEQRLERAAEGLAIDRGHGVADAHVTRALASAEGRGLDLSAEQRGALAHITGDKGLASVVGYAGSGKSAMLGVAREAWEAQGYQVRGAALSGIAAENLEGGSAIASRTIASMEYQWEQGRELLGPRDVLVIDEAGMIGTRQMECVLSHAEQAGAKVVLVGDPEQLQAIEAGAAFRAVTERHGWAEITEIRRQCEDWQRDATKALATGRAGEAIHAYEAHGMVQAAETRELARADLVDRWDAERIAAPDQSRIILTHTNAEVRDLNLAARDRLRDAGELGPDVRVSAERGARDFATGDRIMFLKNERGLGVRNGTLGKVEQVSPERMAVKLDDGRSVAFDLKDYAHVDHGYAATIHKSQGVTVDRAHVLATPGMDRHSAYVALSRHRDGVQLHYGRDDFGDDRRLVRTLSRERAKDMASDYGRDRDAEIRAFADRRGLSGEIRLPERAERSPVEILGPRAGTMRQMGEDPRTVRDAGDRGAGAGQAAAERQPRRGMFDGFRPAPQRPAPESTPAGEREKAAPKRGMFDGLKLSAAPLKGAERAPVPADRGQGRDYARAVERASRSAEAVLQARASGAPVLEHQKVALERTTQALDQIRPGASRDLASAMQRDPALLREAAAGRSGPMIEAMAQEARVRADPNLRADRFVERWQGLKQERDRLYRAGDMAGRERTGKEMAGMAKSLERDPQVELVLRNRTRELGLEIGMGRGRGMNSGDLGRELARDLGIGMGRGMSR
>NZ_CP005087.1|WP_015460630.1|32686_33409_+|hypothetical-protein
MMDEDNYRNNGRAGDDPQAAFEQLRGEVALVRLAVEGLARARESIEIPDYQPTLANTEKILLALTQRVDVIAKSPAMKLTPETMGERVNASVASATGELHNLVNSTRSDMSEAARELRGLIGTTRARWQQDRWLFWIGLGGVVLGILLYALLAGLIARAMPDSWQLPERMATRALAEPTLWDAGTHLMQRASPASWEGIVAAANLARDNRETIEACGAAAAKAKKTVRCTIEVKPANNDR
>NZ_CP005087.1|WP_001389365.1|33818_34583_-|IS6-like-element-IS6100-family-transposase
MTDFKWRHFQGDVILWAVRWYCRYPISYRDLEEMLAERGISVDHTTIYRWVQCYAPEMEKRLRWFWRRGFDPSWRLDETYVKVRGKWTYLYRAVDKRGDTIDFYLSPTRSAKAAKRFLGKALRGLKHWEKPATLNTDKAPSYGAAITELKREGKLDRETAHRQVKYLNNVIEADHGKLKILIKPVRGFKSIPTAYATIKGFEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHFAAAA
>NZ_CP005087.1|WP_007682112.1|34611_34866_+|hypothetical-protein
MLKLHDFCNRAGARILWCTPVFGQAVGTQHIDEILAVWYPTHKTFLDLSDAPGAKESYRLRGACVAYAVIHRCSGSNSPLDGNG
>NZ_CP005087.1|WP_066564812.1|34951_35842_+|haloalkane-dehalogenase
MSLGAKPFGEKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVVHDWGSVLGFDWARRHRERVQGIAYMEAVTMPLEWADFPEQARDLFQAFRSQAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAGWLSESPIPKLFINAEPGHLTTGRIRDFCRTWPNQTEITVAGAHFIQEDSPDEIGAAIAAFVRRLRPA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP005087_1	1.1\|20315\|42\|NZ_CP005087\|CRISPRCasFinder	20315-20356	42	NZ_CP005192	Sphingobium sp. MI1205 plasmid pMI3, complete sequence	31147-31188	0	1.0
NZ_CP005087_1	1.1\|20315\|42\|NZ_CP005087\|CRISPRCasFinder	20315-20356	42	NZ_CP005087	Sphingobium sp. TKS plasmid pTK3, complete sequence	20315-20356	0	1.0
NZ_CP005087_1	1.1\|20315\|42\|NZ_CP005087\|CRISPRCasFinder	20315-20356	42	NC_020562	Sphingomonas sp. MM-1 plasmid pISP1, complete sequence	159529-159570	0	1.0
NZ_CP005087_1	1.1\|20315\|42\|NZ_CP005087\|CRISPRCasFinder	20315-20356	42	NZ_CP005193	Sphingobium sp. MI1205 plasmid pMI4, complete sequence	18238-18279	0	1.0
NZ_CP005087_1	1.1\|20315\|42\|NZ_CP005087\|CRISPRCasFinder	20315-20356	42	NC_020563	Sphingomonas sp. MM-1 plasmid pISP4, complete sequence	33102-33143	0	1.0
NZ_CP005087_1	1.1\|20315\|42\|NZ_CP005087\|CRISPRCasFinder	20315-20356	42	NZ_CP005088	Sphingobium sp. TKS plasmid pTK4, complete sequence	56281-56322	0	1.0
NZ_CP005087_1	1.1\|20315\|42\|NZ_CP005087\|CRISPRCasFinder	20315-20356	42	NZ_AP017658	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_4, complete sequence	34773-34814	1	0.976
NZ_CP005087_1	1.1\|20315\|42\|NZ_CP005087\|CRISPRCasFinder	20315-20356	42	NZ_CP047220	Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed3, complete sequence	56938-56979	2	0.952

1. spacer 1.1|20315|42|NZ_CP005087|CRISPRCasFinder matches to NZ_CP005192 (Sphingobium sp. MI1205 plasmid pMI3, complete sequence) position: , mismatch: 0, identity: 1.0

accgaccccaaaactcaccgaaggctaccccaacactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaacactcacgc	Protospacer
******************************************

2. spacer 1.1|20315|42|NZ_CP005087|CRISPRCasFinder matches to NZ_CP005087 (Sphingobium sp. TKS plasmid pTK3, complete sequence) position: , mismatch: 0, identity: 1.0

accgaccccaaaactcaccgaaggctaccccaacactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaacactcacgc	Protospacer
******************************************

3. spacer 1.1|20315|42|NZ_CP005087|CRISPRCasFinder matches to NC_020562 (Sphingomonas sp. MM-1 plasmid pISP1, complete sequence) position: , mismatch: 0, identity: 1.0

accgaccccaaaactcaccgaaggctaccccaacactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaacactcacgc	Protospacer
******************************************

4. spacer 1.1|20315|42|NZ_CP005087|CRISPRCasFinder matches to NZ_CP005193 (Sphingobium sp. MI1205 plasmid pMI4, complete sequence) position: , mismatch: 0, identity: 1.0

accgaccccaaaactcaccgaaggctaccccaacactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaacactcacgc	Protospacer
******************************************

5. spacer 1.1|20315|42|NZ_CP005087|CRISPRCasFinder matches to NC_020563 (Sphingomonas sp. MM-1 plasmid pISP4, complete sequence) position: , mismatch: 0, identity: 1.0

accgaccccaaaactcaccgaaggctaccccaacactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaacactcacgc	Protospacer
******************************************

6. spacer 1.1|20315|42|NZ_CP005087|CRISPRCasFinder matches to NZ_CP005088 (Sphingobium sp. TKS plasmid pTK4, complete sequence) position: , mismatch: 0, identity: 1.0

accgaccccaaaactcaccgaaggctaccccaacactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaacactcacgc	Protospacer
******************************************

7. spacer 1.1|20315|42|NZ_CP005087|CRISPRCasFinder matches to NZ_AP017658 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_4, complete sequence) position: , mismatch: 1, identity: 0.976

accgaccccaaaactcaccgaaggctaccccaacactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaaaactcacgc	Protospacer
********************************* ********

8. spacer 1.1|20315|42|NZ_CP005087|CRISPRCasFinder matches to NZ_CP047220 (Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed3, complete sequence) position: , mismatch: 2, identity: 0.952

accgaccccaaaactcaccgaaggctaccccaacactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccctaaaactcacgc	Protospacer
******************************.** ********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1551 : 61350

Escherichia_phage(30.43%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011627729.1\|1551_4509_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.5e-235	44.6
WP_013039114.1\|4648_5242_+	recombinase family protein	A0A1S6L009	Salmonella_phage	2.2e-45	56.6
WP_082749261.1\|5303_5726_-	hypothetical protein	NA	NA	NA	NA
WP_066564794.1\|5909_6104_-	hypothetical protein	NA	NA	NA	NA
WP_066564796.1\|6100_6751_-	hypothetical protein	B7SYF4	Stenotrophomonas_phage	4.7e-09	27.8
WP_066564798.1\|6998_7658_-	hypothetical protein	NA	NA	NA	NA
WP_145907848.1\|7914_8175_+	hypothetical protein	NA	NA	NA	NA
WP_082749265.1\|8579_8831_-	hypothetical protein	NA	NA	NA	NA
WP_066564805.1\|8946_9282_-	hypothetical protein	NA	NA	NA	NA
WP_128830664.1\|9268_9460_-	hypothetical protein	NA	NA	NA	NA
WP_157846831.1\|9453_9615_-	hypothetical protein	NA	NA	NA	NA
WP_025547075.1\|9743_10505_+	damage-inducible protein	NA	NA	NA	NA
WP_025547077.1\|10419_11940_+	DNA polymerase Y family protein	NA	NA	NA	NA
WP_162195970.1\|12003_12165_+	hypothetical protein	NA	NA	NA	NA
WP_025547078.1\|12190_12532_+	hypothetical protein	NA	NA	NA	NA
WP_025547079.1\|12789_16056_+	DNA polymerase III subunit alpha	A0A0K1Y8T6	Streptomyces_phage	1.1e-85	27.8
WP_066564807.1\|16430_17381_+	hypothetical protein	NA	NA	NA	NA
WP_001389365.1\|17399_18164_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_015460616.1\|18263_18899_+	AAA family ATPase	A4JWV7	Burkholderia_virus	1.2e-44	52.6
WP_015460617.1\|18924_19206_+	hypothetical protein	NA	NA	NA	NA
WP_015460618.1\|19262_20174_-	replication initiation protein	A0A1V0E006	Clostridioides_phage	3.1e-06	32.3
WP_015449229.1\|22010_22739_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	5.6e-35	39.3
WP_015449228.1\|22725_24243_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	4.8e-12	26.2
WP_006961816.1\|26291_27158_+	recombinase family protein	E5FFF9	Burkholderia_phage	4.8e-25	40.0
WP_015460621.1\|28804_29029_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_015460622.1\|29066_29372_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_015460623.1\|29544_32679_+	Ti-type conjugative transfer relaxase TraA	V5UQN3	Mycobacterium_phage	2.9e-11	25.3
WP_015460630.1\|32686_33409_+	hypothetical protein	NA	NA	NA	NA
WP_001389365.1\|33818_34583_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_007682112.1\|34611_34866_+	hypothetical protein	NA	NA	NA	NA
WP_066564812.1\|34951_35842_+	haloalkane dehalogenase	B9U1C3	Vaccinia_virus	1.1e-56	43.0
WP_001389365.1\|36001_36766_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_029987071.1\|36810_37371_+	recombinase family protein	A0A0C4UR34	Shigella_phage	3.0e-36	51.2
WP_007682056.1\|37402_37711_+	BrnT family toxin	NA	NA	NA	NA
WP_007682049.1\|37691_38024_+	BrnA antitoxin family protein	NA	NA	NA	NA
WP_007682041.1\|38485_39160_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	4.3e-05	31.9
WP_145907151.1\|39342_39636_+	hypothetical protein	NA	NA	NA	NA
WP_081440685.1\|39580_40249_-	EthD domain-containing protein	NA	NA	NA	NA
WP_007682039.1\|40294_41056_-	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	8.8e-15	28.2
WP_001389365.1\|42129_42894_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_082749263.1\|42912_43353_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_013040178.1\|43419_44334_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA
WP_007686274.1\|44555_45314_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_059153310.1\|45773_47417_+	AMP-binding protein	A0A1V0SBX8	Catovirus	1.9e-14	25.3
WP_001389365.1\|48437_49202_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_066564816.1\|49220_49637_-	hypothetical protein	NA	NA	NA	NA
WP_145907851.1\|50079_50346_+	HTH domain-containing protein	NA	NA	NA	NA
WP_086400806.1\|51125_51419_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_030092291.1\|51445_51814_+	HEPN domain-containing protein	NA	NA	NA	NA
WP_066564817.1\|51892_52561_+	ParA family protein	D4HTX7	Vibrio_phage	7.0e-16	33.5
WP_021238836.1\|52553_52841_+	hypothetical protein	NA	NA	NA	NA
WP_030092293.1\|52873_53929_-	replication initiator protein A	A0A0K1Y6J9	Rhodobacter_phage	7.8e-62	38.8
WP_021238840.1\|54511_54748_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_030092294.1\|54842_55091_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_006953933.1\|57431_58298_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	6.7e-27	40.6
WP_021224283.1\|58440_61350_-\|transposase	Tn3 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP005085

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4927 : 56732

Escherichia_phage(20.0%)

integrase,transposase

attL 10650:10709|attR 41580:42461

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021224283.1\|4927_7837_-\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_013041559.1\|8196_8880_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_007686501.1\|8879_9278_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_007686500.1\|9374_10541_-	hypothetical protein	NA	NA	NA	NA
10650:10709	attL	NA	NA	NA	NA
WP_001389365.1\|10704_11469_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_014072606.1\|12090_12477_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_014072607.1\|12511_13261_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_014072608.1\|13280_14060_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_014072609.1\|14063_14501_-	membrane protein	NA	NA	NA	NA
WP_041393786.1\|14505_14931_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_014072611.1\|14933_15275_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014072612.1\|15501_16971_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_014072613.1\|17079_17586_+	DsrE family protein	NA	NA	NA	NA
WP_041393782.1\|17620_18388_-	membrane protein	NA	NA	NA	NA
WP_009824028.1\|18665_19544_-	AAA family ATPase	B5TA81	Burkholderia_phage	1.0e-06	25.4
WP_004212864.1\|19470_20871_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2H4JEQ4	uncultured_Caudovirales_phage	9.9e-12	29.4
WP_009824027.1\|21062_21635_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	9.5e-38	48.1
WP_013039112.1\|21924_23127_+	PDZ domain-containing protein	NA	NA	NA	NA
WP_007406847.1\|23120_23540_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004212870.1\|23615_24242_+	cation transporter	NA	NA	NA	NA
WP_004212871.1\|24241_26209_+	c-type cytochrome	NA	NA	NA	NA
WP_007406840.1\|26282_26579_+	hypothetical protein	NA	NA	NA	NA
WP_013039111.1\|26639_27917_+	TolC family protein	NA	NA	NA	NA
WP_004212877.1\|27916_29095_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004212878.1\|29098_32344_+	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_013849881.1\|32397_32886_+	SRPBCC domain-containing protein	NA	NA	NA	NA
WP_009824022.1\|32882_33260_+	hypothetical protein	NA	NA	NA	NA
WP_004212881.1\|33307_33721_+	hypothetical protein	NA	NA	NA	NA
WP_004212882.1\|33724_34411_+	hypothetical protein	NA	NA	NA	NA
WP_004212885.1\|34407_35016_+	cation transporter	NA	NA	NA	NA
WP_004212886.1\|35012_37514_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	7.7e-124	41.0
WP_004212890.1\|37510_38260_+	HAD-IIB family hydrolase	NA	NA	NA	NA
WP_013849879.1\|38456_41348_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	8.4e-191	38.8
WP_001389365.1\|41634_42399_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_082749201.1\|43159_43609_-	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	2.0e-19	45.0
41580:42461	attR	NA	NA	NA	NA
WP_145907753.1\|44549_45827_+	EAL domain-containing protein	NA	NA	NA	NA
WP_081659699.1\|45844_47617_+	response regulator	A0A1V0SGX0	Hokovirus	1.3e-05	23.6
WP_158511787.1\|47613_47994_-	hypothetical protein	NA	NA	NA	NA
WP_021244690.1\|48399_48828_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_021244689.1\|48897_50334_+	MFS transporter	NA	NA	NA	NA
WP_021244688.1\|50365_50821_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_031290939.1\|51023_51911_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_158511788.1\|51981_52146_-	hypothetical protein	NA	NA	NA	NA
WP_145907756.1\|52142_52613_-	hypothetical protein	NA	NA	NA	NA
WP_021244684.1\|52930_53203_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_021244683.1\|53189_53579_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_021244682.1\|53768_54107_+	hypothetical protein	NA	NA	NA	NA
WP_021244680.1\|54852_55158_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_145907759.1\|55369_56732_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	1.7e-08	28.5

DBSCAN-SWA_2

162577 : 207503

Caulobacter_phage(20.0%)

integrase

attL 203834:203872|attR 207595:207633

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066564154.1\|162577_163579_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_066564156.1\|163700_164096_-	cupin domain-containing protein	Q2I8C5	Bacillus_phage	2.0e-23	45.5
WP_066564159.1\|164405_165098_+	hypothetical protein	NA	NA	NA	NA
WP_145907781.1\|165097_166084_+	hypothetical protein	NA	NA	NA	NA
WP_066564328.1\|166551_169575_-	conjugative relaxase	NA	NA	NA	NA
WP_066564164.1\|169579_171874_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_066564166.1\|171863_172154_-	hypothetical protein	NA	NA	NA	NA
WP_021243667.1\|172835_173054_+	hypothetical protein	NA	NA	NA	NA
WP_066564168.1\|173175_173397_-	hypothetical protein	NA	NA	NA	NA
WP_066564174.1\|174866_175856_-	DUF2493 domain-containing protein	NA	NA	NA	NA
WP_066564177.1\|176990_177320_-	hypothetical protein	NA	NA	NA	NA
WP_021243545.1\|177372_177702_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_021243547.1\|178636_178963_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_046765019.1\|179417_180113_-	hypothetical protein	NA	NA	NA	NA
WP_046765018.1\|180276_180471_-	hypothetical protein	NA	NA	NA	NA
WP_046765017.1\|180737_181106_-	hypothetical protein	A0A1B1IUL8	uncultured_Mediterranean_phage	1.3e-32	58.9
WP_046765016.1\|181108_181582_-	hypothetical protein	NA	NA	NA	NA
WP_046765015.1\|181574_182087_-	hypothetical protein	NA	NA	NA	NA
WP_046765014.1\|182211_182688_-	DUF736 domain-containing protein	NA	NA	NA	NA
WP_046765013.1\|182835_183162_-	hypothetical protein	NA	NA	NA	NA
WP_157035819.1\|183191_183344_+	hypothetical protein	NA	NA	NA	NA
WP_145907784.1\|183543_184188_+	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_046765011.1\|184707_185352_-	hypothetical protein	NA	NA	NA	NA
WP_046765010.1\|185482_186505_-	hypothetical protein	NA	NA	NA	NA
WP_082749226.1\|186532_187009_+	hypothetical protein	NA	NA	NA	NA
WP_066564331.1\|187419_187683_+	hypothetical protein	NA	NA	NA	NA
WP_158511791.1\|187901_188930_-	hypothetical protein	NA	NA	NA	NA
WP_021243568.1\|190054_190489_-	antirestriction protein	I6WC98	Pseudomonas_phage	3.7e-18	40.2
WP_021243569.1\|190723_190930_-	hypothetical protein	NA	NA	NA	NA
WP_021243570.1\|190969_191581_-	hypothetical protein	NA	NA	NA	NA
WP_066564182.1\|191656_191941_-	hypothetical protein	K4JTS1	Caulobacter_virus	1.5e-07	41.0
WP_066553259.1\|192268_193135_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	2.8e-41	38.6
WP_066553256.1\|193304_195467_-\|integrase	integrase	NA	NA	NA	NA
WP_066553254.1\|195463_197251_-	hypothetical protein	NA	NA	NA	NA
WP_066553252.1\|197247_198597_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_046766322.1\|198754_199504_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	4.3e-46	46.6
WP_046766323.1\|199582_201670_-	ParB N-terminal domain-containing protein	G8DH78	Emiliania_huxleyi_virus	2.8e-31	27.3
WP_066564185.1\|201745_203815_-	methylase	A0A1Q3DLU0	Chionoecetes_opilio_bacilliform_virus	4.9e-07	25.9
203834:203872	attL	NA	NA	NA	NA
WP_009823939.1\|203917_204922_-\|integrase	site-specific integrase	S6C485	Thermus_phage	6.2e-08	26.9
WP_009823940.1\|204918_206274_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_007015824.1\|206270_207503_-\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	1.6e-05	22.2
207595:207633	attR	NA	NA	NA	NA

DBSCAN-SWA_3

375677 : 409819

Escherichia_phage(42.86%)

coat,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021244700.1\|375677_376151_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_021244699.1\|376155_376884_+	molecular chaperone	NA	NA	NA	NA
WP_059140381.1\|376963_379234_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_059140382.1\|379302_379701_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_001389365.1\|381514_382279_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_066564280.1\|382994_384557_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_066564284.1\|384553_385297_-	hypothetical protein	NA	NA	NA	NA
WP_017503343.1\|385293_385605_-	hypothetical protein	NA	NA	NA	NA
WP_017503342.1\|385601_385778_-	hypothetical protein	NA	NA	NA	NA
WP_026109654.1\|385774_386002_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_066564286.1\|386039_386345_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_017503339.1\|386518_389677_+	Ti-type conjugative transfer relaxase TraA	V5UQN3	Mycobacterium_phage	1.4e-13	26.9
WP_017503338.1\|389837_390572_+	hypothetical protein	NA	NA	NA	NA
WP_066564288.1\|390618_390867_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_017503336.1\|391126_392044_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	2.5e-11	28.9
WP_051035835.1\|392362_392575_+	hypothetical protein	NA	NA	NA	NA
WP_038293089.1\|392571_392955_+	response regulator	NA	NA	NA	NA
WP_017503332.1\|393222_393636_-	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_017503331.1\|393622_393871_-	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_017503330.1\|394068_394308_+	hypothetical protein	NA	NA	NA	NA
WP_062121909.1\|394346_394685_-	hypothetical protein	NA	NA	NA	NA
WP_158511798.1\|394869_395028_+	hypothetical protein	NA	NA	NA	NA
WP_007681980.1\|395040_395346_+	hypothetical protein	NA	NA	NA	NA
WP_001389365.1\|395620_396385_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_007684590.1\|398315_398519_-	hypothetical protein	NA	NA	NA	NA
WP_007684587.1\|398707_399385_+	hypothetical protein	NA	NA	NA	NA
WP_007684585.1\|399364_399997_-	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA
WP_007684583.1\|400136_401243_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_001389365.1\|401309_402074_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_013039076.1\|402909_403479_+	hypothetical protein	NA	NA	NA	NA
WP_007683381.1\|403413_404268_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_007683380.1\|404264_404528_-	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_021226801.1\|404775_406137_-	hypothetical protein	NA	NA	NA	NA
WP_021226800.1\|406133_406739_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	8.8e-34	45.5
WP_031298420.1\|406885_409819_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.1e-150	34.1

DBSCAN-SWA_4

453502 : 516462

uncultured_Caudovirales_phage(23.53%)

integrase,transposase

attL 512747:512785|attR 516508:516546

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001389365.1\|453502_454267_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_007683385.1\|454551_455298_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_007683387.1\|455372_455984_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_007683389.1\|455995_456928_+	phytanoyl-CoA dioxygenase	NA	NA	NA	NA
WP_009823965.1\|456991_457330_+	hypothetical protein	NA	NA	NA	NA
WP_007683393.1\|457326_457992_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_007683396.1\|457988_458327_+	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_007683398.1\|458323_458674_+	type VI secretion protein	NA	NA	NA	NA
WP_007683400.1\|458660_461078_+	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
WP_007683402.1\|461081_461795_+	type VI secretion protein	NA	NA	NA	NA
WP_150132838.1\|461791_462010_+	EexN family lipoprotein	NA	NA	NA	NA
WP_007683405.1\|462031_462976_+	type IV secretion system protein	NA	NA	NA	NA
WP_007683408.1\|463312_464011_+	conjugal transfer protein TraJ	NA	NA	NA	NA
WP_007683410.1\|464007_464865_+	P-type conjugative transfer protein VirB9	NA	NA	NA	NA
WP_014072617.1\|464868_466086_+	conjugal transfer protein TrbI	NA	NA	NA	NA
WP_007683413.1\|466089_467094_+	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA
WP_007683415.1\|467077_469042_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_073507149.1\|469031_469916_+	DNA transfer protein	NA	NA	NA	NA
WP_007683417.1\|469995_473466_+	DNA methyltransferase	Q6NE04	Leptospira_phage	8.4e-28	22.4
WP_007683419.1\|473557_474811_+	DNA repair exonuclease	NA	NA	NA	NA
WP_007683421.1\|474813_478254_+	AAA family ATPase	NA	NA	NA	NA
WP_007683423.1\|478413_480480_+	AAA family ATPase	NA	NA	NA	NA
WP_014072624.1\|480472_482245_+	ATP-dependent helicase	NA	NA	NA	NA
WP_009823952.1\|482576_482804_-	hypothetical protein	NA	NA	NA	NA
WP_007688041.1\|483043_484093_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_007688042.1\|484085_484694_-	hypothetical protein	NA	NA	NA	NA
WP_007688043.1\|484862_485984_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_007688044.1\|485976_486537_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_007688045.1\|486743_487691_-	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	4.6e-13	35.8
WP_007688046.1\|487690_488455_-	ParA family protein	B0ZSI1	Halomonas_phage	8.9e-07	28.9
WP_009823948.1\|488835_489204_-	DUF3768 domain-containing protein	L7TKV8	Rhizobium_phage	3.6e-14	44.0
WP_007688059.1\|489535_489763_-	hypothetical protein	NA	NA	NA	NA
WP_066553268.1\|490490_492356_+	RNA-directed DNA polymerase	A0A0U4J920	Pseudomonas_phage	2.4e-29	38.0
WP_007688063.1\|492521_493073_-	hypothetical protein	NA	NA	NA	NA
WP_009823947.1\|493150_493393_-	hypothetical protein	NA	NA	NA	NA
WP_007688066.1\|493620_494055_+	hypothetical protein	NA	NA	NA	NA
WP_007688067.1\|494130_494538_-	single-stranded DNA-binding protein	A0A0M3LP44	Mannheimia_phage	1.2e-13	35.9
WP_007688068.1\|494945_495614_-	hypothetical protein	NA	NA	NA	NA
WP_007688069.1\|495726_496668_-	DUF2493 domain-containing protein	A0A0D4DBJ6	Vibrio_phage	6.0e-05	35.3
WP_007688070.1\|497015_497756_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	3.7e-74	71.6
WP_007688071.1\|497755_498187_-	GNAT family N-acetyltransferase	A0A2H4J155	uncultured_Caudovirales_phage	1.8e-20	44.7
WP_007688072.1\|498183_499251_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_007688073.1\|499247_499688_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	7.0e-49	69.3
WP_007688074.1\|499684_500221_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	2.6e-21	36.9
WP_007688075.1\|500233_500653_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_066564295.1\|500624_500894_-	antirestriction protein ArdC	NA	NA	NA	NA
WP_066553259.1\|501221_502088_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	2.8e-41	38.6
WP_066553256.1\|502257_504420_-\|integrase	integrase	NA	NA	NA	NA
WP_066553254.1\|504416_506204_-	hypothetical protein	NA	NA	NA	NA
WP_066553252.1\|506200_507550_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_066564298.1\|507707_508454_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	4.4e-35	41.1
WP_007688079.1\|508546_510559_-	ParB N-terminal domain-containing protein	G8DH78	Emiliania_huxleyi_virus	4.5e-34	27.5
WP_009823943.1\|510670_512647_-	methylase	NA	NA	NA	NA
512747:512785	attL	NA	NA	NA	NA
WP_007015824.1\|512876_514109_+\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	1.6e-05	22.2
WP_009823940.1\|514105_515461_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_009823939.1\|515457_516462_+\|integrase	site-specific integrase	S6C485	Thermus_phage	6.2e-08	26.9
516508:516546	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP005084

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

443715 : 504583

Staphylococcus_phage(22.22%)

transposase,integrase

attL 436507:436523|attR 484182:484198

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
436507:436523	attL	NA	NA	NA	NA
WP_066563851.1\|443715_444747_+\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	2.0e-06	27.4
WP_046764605.1\|445160_446066_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.7e-20	28.6
WP_066562693.1\|446070_447264_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_082749187.1\|447772_450061_-	arylsulfatase	NA	NA	NA	NA
WP_082749019.1\|450138_452367_-	TonB-dependent receptor	NA	NA	NA	NA
WP_066562697.1\|452457_454839_-	arylsulfatase	NA	NA	NA	NA
WP_158511771.1\|455195_455828_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_066563853.1\|456157_458416_+	membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA	NA	NA	NA
WP_066562700.1\|458461_459646_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA
WP_066562702.1\|459657_460437_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_066563854.1\|460461_461124_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_066562704.1\|461468_462608_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_066562706.1\|462707_463301_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_066562711.1\|463355_464291_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_066562713.1\|464311_465157_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_066562715.1\|465204_466311_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_066562718.1\|466636_468289_+	acyl--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.3e-31	25.8
WP_066562720.1\|468316_469432_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	5.0e-51	35.0
WP_066562721.1\|469480_469969_-	flavin reductase family protein	NA	NA	NA	NA
WP_066562724.1\|469976_471233_-	cytochrome P450	NA	NA	NA	NA
WP_066562727.1\|471247_472330_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_066562729.1\|472663_473410_+	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	2.2e-18	35.2
WP_082749025.1\|473348_474197_+	crotonase	NA	NA	NA	NA
WP_066563857.1\|474696_477075_+	TonB-dependent receptor plug domain-containing protein	NA	NA	NA	NA
WP_066562735.1\|477394_478594_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.0e-94	46.7
WP_066563859.1\|478832_479864_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_066562739.1\|480621_480939_-	hypothetical protein	NA	NA	NA	NA
WP_066563862.1\|481326_482505_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA
WP_066562741.1\|482519_484595_-	hypothetical protein	NA	NA	NA	NA
484182:484198	attR	NA	NA	NA	NA
WP_066562743.1\|484609_486343_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_066562745.1\|486449_487520_-	phosphotransferase	NA	NA	NA	NA
WP_066562748.1\|487516_488686_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_066562749.1\|488710_489463_-	SDR family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	1.3e-10	25.0
WP_066562751.1\|489553_490219_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_066562752.1\|490332_491043_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_066563871.1\|491093_491675_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_082749029.1\|491841_492387_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_082749031.1\|492495_494199_+	VWA domain-containing protein	NA	NA	NA	NA
WP_066562754.1\|494336_495383_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_066562756.1\|495379_496168_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_066562758.1\|496164_496401_-	formate dehydrogenase subunit delta	NA	NA	NA	NA
WP_066562760.1\|496411_499258_-	formate dehydrogenase subunit alpha	A0A077SK27	Escherichia_phage	1.9e-22	24.1
WP_066562761.1\|499254_500844_-	formate dehydrogenase	NA	NA	NA	NA
WP_066562763.1\|500840_501320_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA
WP_066562765.1\|501306_501552_-	hypothetical protein	NA	NA	NA	NA
WP_066562769.1\|501853_502513_+	sigma-70 family RNA polymerase sigma factor	A0A076YQ50	Rhizobium_phage	5.1e-11	29.5
WP_066562770.1\|502697_503042_-	hypothetical protein	NA	NA	NA	NA
WP_066562771.1\|503557_504583_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

830588 : 849495

Bacillus_phage(40.0%)

transposase,integrase

attL 846410:846440|attR 851503:851533

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066563343.1\|830588_831497_+\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJJ6	Virus_Rctr41k	4.9e-28	28.8
WP_066563346.1\|831501_832698_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_145907689.1\|833368_834079_+	DNA-binding response regulator	NA	NA	NA	NA
WP_066563351.1\|834071_834659_+	hypothetical protein	NA	NA	NA	NA
WP_066563354.1\|834662_838067_+	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	5.1e-38	27.6
WP_066563357.1\|838154_838898_+	hypothetical protein	NA	NA	NA	NA
WP_066563361.1\|838897_839281_+	hypothetical protein	NA	NA	NA	NA
WP_066563365.1\|839277_840624_+	hypothetical protein	NA	NA	NA	NA
WP_145907692.1\|840620_841145_+	hypothetical protein	NA	NA	NA	NA
WP_145907695.1\|841322_843008_+	hypothetical protein	NA	NA	NA	NA
WP_145907697.1\|843318_844413_+	hypothetical protein	NA	NA	NA	NA
WP_066563377.1\|844652_844982_+\|transposase	transposase	NA	NA	NA	NA
WP_030541462.1\|844978_845326_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	8.3e-29	50.9
846410:846440	attL	NA	NA	NA	NA
WP_066563385.1\|846497_847514_-\|integrase	site-specific integrase	A0A0K2CP59	Brevibacillus_phage	1.0e-18	25.2
WP_066563387.1\|847510_848482_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_082749163.1\|848478_849495_-\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	1.9e-09	24.3
851503:851533	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage