CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP005190	Sphingobium sp. MI1205 plasmid pMI1, complete sequence	0 crisprs	NA	0	1
NZ_CP005189	Sphingobium sp. MI1205 chromosome 2, complete sequence	0 crisprs	NA	0	0
NZ_CP005188	Sphingobium sp. MI1205 chromosome 1, complete sequence	2 crisprs	cas3,csa3,WYL,DinG	2	9
NZ_CP005191	Sphingobium sp. MI1205 plasmid pMI2, complete sequence	0 crisprs	csa3,RT	0	4
NZ_CP005193	Sphingobium sp. MI1205 plasmid pMI4, complete sequence	1 crisprs	NA	1	0
NZ_CP005192	Sphingobium sp. MI1205 plasmid pMI3, complete sequence	1 crisprs	NA	1	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP005192_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP005192_1

31123-31212

Orphan

Consensus_repeat	Method
GACTCGACCCCAAAACTCACTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP005192_1

>merge|NZ_CP005192|1|31123-31212|CRISPRCasFinder
GACTCGACCCCAAAACTCACTTTTACCGACCCCAAAACTCACCGAAGGCTACCCCAACACTCACGCGACTCGACCCCAAAACTCACTTTT

>NZ_CP005192|1|1|31123-31212|CRISPRCasFinder
GACTCGACCCCAAAACTCACTTTT	ACCGACCCCAAAACTCACCGAAGGCTACCCCAACACTCACGC
GACTCGACCCCAAAACTCACTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP005192.1\|WP_062121710.1\|23379_23949_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005192.1\|WP_007685995.1\|28154_28607_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005192.1\|WP_007682112.1\|40941_41196_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005192.1\|WP_007685994.1\|27433_28126_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005192.1\|WP_001389365.1\|37965_38730_-\|IS6-like-element-IS6100-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP005192.1\|WP_015460618.1\|30094_31006_-\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP005192.1\|WP_015460622.1\|33213_33519_-\|conjugal-transfer-protein-TraD	unknown	unknown	gnl\|CDD\|368890
NZ_CP005192.1\|WP_015460621.1\|32951_33176_-\|conjugal-transfer-protein-TraD	unknown	unknown	gnl\|CDD\|368890
NZ_CP005192.1\|WP_015460616.1\|29095_29731_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|222854
NZ_CP005192.1\|WP_062121711.1\|22545_23220_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP005192.1\|WP_007685993.1\|26671_27268_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP005192.1\|WP_015460630.1\|36833_37556_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005192.1\|WP_007682112.1\|38758_39013_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005192.1\|WP_015460617.1\|29756_30038_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005192.1\|WP_001389365.1\|40148_40913_-\|IS6-like-element-IS6100-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP005192.1\|WP_007685992.1\|25026_26679_-\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP005192.1\|WP_007682110.1\|39098_39989_+\|haloalkane-dehalogenase	unknown	unknown	gnl\|CDD\|235135
NZ_CP005192.1\|WP_015460623.1\|33691_36826_+\|Ti-type-conjugative-transfer-relaxase-TraA	unknown	unknown	gnl\|CDD\|237546
NZ_CP005192.1\|WP_007682110.1\|41281_42172_+\|haloalkane-dehalogenase	unknown	unknown	gnl\|CDD\|235135
NZ_CP005192.1\|WP_007685991.1\|24049_25027_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|225806

Protein	Function_ID	Function_description	E-value
NZ_CP005192.1\|WP_001389365.1\|37965_38730_-\|IS6-like-element-IS6100-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.97603e-67
NZ_CP005192.1\|WP_015460618.1\|30094_31006_-\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	1.07935e-25
NZ_CP005192.1\|WP_015460622.1\|33213_33519_-\|conjugal-transfer-protein-TraD	gnl\|CDD\|368890	pfam06412, TraD, Conjugal transfer protein TraD. This family contains bacterial TraD conjugal transfer proteins. Mutations in the TraD gene result in loss of transfer.	8.00175e-11
NZ_CP005192.1\|WP_015460621.1\|32951_33176_-\|conjugal-transfer-protein-TraD	gnl\|CDD\|368890	pfam06412, TraD, Conjugal transfer protein TraD. This family contains bacterial TraD conjugal transfer proteins. Mutations in the TraD gene result in loss of transfer.	6.89947e-14
NZ_CP005192.1\|WP_015460616.1\|29095_29731_+\|AAA-family-ATPase	gnl\|CDD\|222854	PHA02518, PHA02518, ParA-like protein; Provisional.	3.43275e-46
NZ_CP005192.1\|WP_062121711.1\|22545_23220_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.40929e-08
NZ_CP005192.1\|WP_007685993.1\|26671_27268_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	1.5936e-58
NZ_CP005192.1\|WP_001389365.1\|40148_40913_-\|IS6-like-element-IS6100-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.97603e-67
NZ_CP005192.1\|WP_007685992.1\|25026_26679_-\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	3.92057e-10
NZ_CP005192.1\|WP_007682110.1\|39098_39989_+\|haloalkane-dehalogenase	gnl\|CDD\|235135	PRK03592, PRK03592, haloalkane dehalogenase; Provisional.	4.34345e-171
NZ_CP005192.1\|WP_015460623.1\|33691_36826_+\|Ti-type-conjugative-transfer-relaxase-TraA	gnl\|CDD\|237546	PRK13889, PRK13889, conjugal transfer relaxase TraA; Provisional.	0
NZ_CP005192.1\|WP_007682110.1\|41281_42172_+\|haloalkane-dehalogenase	gnl\|CDD\|235135	PRK03592, PRK03592, haloalkane dehalogenase; Provisional.	4.34345e-171
NZ_CP005192.1\|WP_007685991.1\|24049_25027_-\|AAA-family-ATPase	gnl\|CDD\|225806	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion].	9.36472e-45

>NZ_CP005192.1|WP_015460618.1|30094_31006_-|replication-initiation-protein
MTRASSPVNNGKAKIALGDDTALTLSQKGRGNPFDPANYGEIVKPGELVDIVELSPLTLADRRIYNLLIANAWERISEPVIHRIAKTALKGTHQGNERIESSLLRLMGTIAIVTIRKGGKSYKRRVQLLGSSDESLEKDGFLHYRIPEELIEILRNSEVYARLKTQVMYCFESKYALCLYEMIERRIGLEYKQSEEFTIAELRGLLNVPEGKLERFADFNKYCLKVAQEEINKLCPFWVEFTPIKKGRKVERVSMMWLPKTMSGRRDAQNLIDQHSIVRRAKLRGDIPEMPVLVDFSAPAAQR
>NZ_CP005192.1|WP_015460617.1|29756_30038_+|hypothetical-protein
MAIARKPNSKPKSPMDEAAADAFIAGAAKPKAEPIATEADEAGQGAEPRKSPVMLRFDRALLAKVDAAAKRRGISRSAWIQFTVSRALDAGEG
>NZ_CP005192.1|WP_015460616.1|29095_29731_+|AAA-family-ATPase
MILAVGNTKGGVGKTTLAVNLAVARALAGRDLLLVDGDEQGTALTFTELRADRLGQAGYTAVALTGAALRSQVRQLAAKYDDIIIDVGGRDTGSLRAALTVADTLLVPVQPRSFDVWALDQVAALVAEAREINEGLRAVAVLNGADAQGADNEAALEMIGDIEGIEVLPTSIVRRKAFPNAAAEGRAVGEQSPRDAKAIDELAALVSAVFV
>NZ_CP005192.1|WP_007685995.1|28154_28607_+|hypothetical-protein
MPRHGTLRGVGLTALGAVVVAGSFVALGLRPDGIASYYRDTLTPAGFAIWFCGFVAATLAPPAIAVLCWFGAMRFRYGWLLHILLVPATYAAVRGSIALMLAVASEPDSDGPTRWATDPAVMLMVVCPIVYFLILGSTKLREHRASANDC
>NZ_CP005192.1|WP_007685994.1|27433_28126_+|hypothetical-protein
MQVLDTVGWVGDGDDTDFFLAIERTFDLRLRSNLPWTTFGEVRDHVVAHVAAYSGGGTTCATQMTFYRLRRALGLGRHVGPDAPLAPLIGGKLRQAFSDLEADTDLKMPATRAGWLGIVSGLCFAVAVAILAFTTLAPPLRIFAAGASAYAGLWLRHLDRRRLPRRCDTIGDLARLVTEQNRGRLARDGARLTAPEIWRIIQQLAAEESGIDPDLIGSETTFFRAKVRAA
>NZ_CP005192.1|WP_007685993.1|26671_27268_-|recombinase-family-protein
MRVGYARVSTSDQNPELQLDALRRAGCERVFTEKASGARDDRPELARILEDVLRAGDTLVVWKLDRLARSLKKLIATAEDLEREKIGLVSLTESIDTTTPGGMLTFHVFGAIAQFERALIRERTTAGLVEARRQGRKGGRPSAMRPSDVAAARAMMKEGTLPVRDIAKRMGVSVATLYRYAGKRGSGASIKEAATAHG
>NZ_CP005192.1|WP_007685992.1|25026_26679_-|IS481-family-transposase
MADRAKRPPGEALIDLRRRLSLLPPRDPGRTEIIARAAEAYGISIWTLYRALRELNRPKSVRRSDHGATRVAPQAEMERYAEIVAALKIRTTNKKGRHVSTARAIEFLETDGVETPEGLVKVAPGLLKRATIDRLLRSSGLDYARVTRPHAAVRFQARRSNELWHFDMSPSDLKQVEAPLWIEQGRGKPTLMLFSAVDDCSGVVYQEYRSVYGEDAESALRFLFNAFAAKPEPELPFQGLPVTIYMDNGPVSRSRVFQSVMGSLGVRVLTHLPPKADDRHTAARAKGKVERPFRTVKEVHETLYHFHKPKDEAEANLWMRRALVTYNNGDHRSEPHARIEHWLRHLPGDGVRAMCSWERFCAFAREPERRTVAGDATVSVEGASYEVEPELAGETVTLLWGLFDQQLFVEHDGKRHGPYEPSRGAVPLYRYRKYQKSRAEERLDKVVRLADQLGLPRATVTGGDRPLPSLPPSTAGLAVRQTPFPEPAVETAYPTGLAARHAIVDQLRRPLGSLPEADRAFIDALLGETLDKTIIADRIRERFQSRRGTS
>NZ_CP005192.1|WP_007685991.1|24049_25027_-|AAA-family-ATPase
MLADVQSSYGLARPFQGVGNFETEHQRNLVREVCAAVQTGRLIVVSGLVGSGKTHLLRRIEDELARAGKVAVAKSLAVDKRRTSLPSLIEALFYDLSPGDRAQVKIPKQAERRERDLRDIMRKGKRPVVLVVDEAHDLHHKTLTGLKRLMEVVADAGVLLSVLLVGHPRLRNDLRRPQMEEIGYRTTTFDYEGIGAERRDYVAWLLGACAAEGVKVADLMNEDAIDLIAERLRTPLQIEMHLTLAFEQGFRFAAKPVTAEIVEQVLSRAIDDLEPTLTRNGYDAGALASQLNTRPSDIRAFLAGTLDAEHTRDLTERLREAGVPI
>NZ_CP005192.1|WP_062121710.1|23379_23949_-|hypothetical-protein
MNRHLTAASLSIVSLLSACSASAERRLEGRVFDIPRANDISDNDKPFFLPALDPSDGFSFYLNPSASLPERNLVGVASKKRMCARAAGTEALVNSTVCASRPLSWRGRTLRKVSDGVFWTYQLPAEAGQKRPPSLASCSAMGGGSRPGLCTANLPYDNLVLTIHFRDNQVGSLQALYDQSVASLRKWER
>NZ_CP005192.1|WP_062121711.1|22545_23220_+|TetR/AcrR-family-transcriptional-regulator
MVREQNKEERRSRILGAAEKLIRELGTVEFSMRELAARAHISHYTSYNLIGNKGTVLYTLLHRAIDRITNLPSQADPNFDPLSYAFDMGDLAVEFYVSDPDFFRPLLRFLFGVSDAELRPAFMNKGVRHWHAVALAIWQSGDLVGHVSPEDFASMINTYFGGALGLWSHDNIDAAVFFAHIRHAMAISLLACGNKQWEARLVAVGDCKDTGLCSQTARISAQIC
>NZ_CP005192.1|WP_015460621.1|32951_33176_-|conjugal-transfer-protein-TraD
MARRERTRHLIELGGLVQKAGLVELADDDRATLYGALLDCTARVQGDDAGNVLALWKRRGKRAFDAEAEGAGNG
>NZ_CP005192.1|WP_015460622.1|33213_33519_-|conjugal-transfer-protein-TraD
MRKVRDYDAELRALNDKAKALKARKVQQLGELVTSTGADALDLDTLAGALLAAVEAADANEKEAWRSRGAAFFQGRGRKAGRRTGGNGEGARQTGAGKEQA
>NZ_CP005192.1|WP_015460623.1|33691_36826_+|Ti-type-conjugative-transfer-relaxase-TraA
MAIYHFSAKVISRANGSSAVASAAYRAAERLHDDRLGRDHDFSNKAGVVHSEILAPEGAPERLNDRATLWNEVEAGEKRKDAQLAREVEFSIPRELNQQQGIQLARDFVEKQFVERGMVADMNVHWDMGKDGQPKPHAHVMLSMREVGPEGFGQKVREWNSTALLQEWRVAWADHVNERLAELDIDARIDHRTLEAQGIDLEPQHKIGPAASRMPEQGLEAERVEDHARIARENGEKIIARPEIALDAIARQQATFTRRDLAQFAFRHSDGKDQFDQVMSAVRSSPELVALGRDGKGEDRFTSRDMIAAEQRLERAAEGLAIDRGHGVADAHVTRALASAEGRGLDLSAEQRGALAHITGDKGLASVVGYAGSGKSAMLGVAREAWEAQGYQVRGAALSGIAAENLEGGSAIASRTIASMEYQWEQGRELLGPRDVLVIDEAGMIGTRQMECVLSHAEQAGAKVVLVGDPEQLQAIEAGAAFRAVTERHGWAEITEIRRQCEDWQRDATKALATGRAGEAIHAYEAHGMVQAAETRELARADLVDRWDAERIAAPDQSRIILTHTNAEVRDLNLAARDRLRDAGELGPDVRVSAERGARDFATGDRIMFLKNERGLGVRNGTLGKVEQVSPERMAVKLDDGRSVAFDLKDYAHVDHGYAATIHKSQGVTVDRAHVLATPGMDRHSAYVALSRHRDGVQLHYGRDDFGDDRRLVRTLSRERAKDMASDYGRDRDAEIRAFADRRGLSGEIRLPERAERSPVEILGPRAGTMRQMGEDPRTVRDAGDRGAGAGQAAAERQPRRGMFDGFRPAPQRPAPESTPAGEREKAAPKRGMFDGLKLSAAPLKGAERAPVPADRGQGRDYARAVERASRSAEAVLQARASGAPVLEHQKVALERTTQALDQIRPGASRDLASAMQRDPALLREAAAGRSGPMIEAMAQEARVRADPNLRADRFVERWQGLKQERDRLYRAGDMAGRERTGKEMAGMAKSLERDPQVELVLRNRTRELGLEIGMGRGRGMNSGDLGRELARDLGIGMGRGMSR
>NZ_CP005192.1|WP_015460630.1|36833_37556_+|hypothetical-protein
MMDEDNYRNNGRAGDDPQAAFEQLRGEVALVRLAVEGLARARESIEIPDYQPTLANTEKILLALTQRVDVIAKSPAMKLTPETMGERVNASVASATGELHNLVNSTRSDMSEAARELRGLIGTTRARWQQDRWLFWIGLGGVVLGILLYALLAGLIARAMPDSWQLPERMATRALAEPTLWDAGTHLMQRASPASWEGIVAAANLARDNRETIEACGAAAAKAKKTVRCTIEVKPANNDR
>NZ_CP005192.1|WP_001389365.1|37965_38730_-|IS6-like-element-IS6100-family-transposase
MTDFKWRHFQGDVILWAVRWYCRYPISYRDLEEMLAERGISVDHTTIYRWVQCYAPEMEKRLRWFWRRGFDPSWRLDETYVKVRGKWTYLYRAVDKRGDTIDFYLSPTRSAKAAKRFLGKALRGLKHWEKPATLNTDKAPSYGAAITELKREGKLDRETAHRQVKYLNNVIEADHGKLKILIKPVRGFKSIPTAYATIKGFEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHFAAAA
>NZ_CP005192.1|WP_007682112.1|38758_39013_+|hypothetical-protein
MLKLHDFCNRAGARILWCTPVFGQAVGTQHIDEILAVWYPTHKTFLDLSDAPGAKESYRLRGACVAYAVIHRCSGSNSPLDGNG
>NZ_CP005192.1|WP_007682110.1|39098_39989_+|haloalkane-dehalogenase
MSLGAKPFGEKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYTYAEHRDYLDALWEALDLGDRVVLVVHDWGSVLGFDWARRHRERVQGIAYMEAVTMPLEWADFPEQDRDLFQAFRSQAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAGWLSESPIPKLFINAEPGHLTTGRIRDFCRTWPNQTEITVAGAHFIQEDSPDEIGAAIAAFVRRLRPA
>NZ_CP005192.1|WP_001389365.1|40148_40913_-|IS6-like-element-IS6100-family-transposase
MTDFKWRHFQGDVILWAVRWYCRYPISYRDLEEMLAERGISVDHTTIYRWVQCYAPEMEKRLRWFWRRGFDPSWRLDETYVKVRGKWTYLYRAVDKRGDTIDFYLSPTRSAKAAKRFLGKALRGLKHWEKPATLNTDKAPSYGAAITELKREGKLDRETAHRQVKYLNNVIEADHGKLKILIKPVRGFKSIPTAYATIKGFEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHFAAAA
>NZ_CP005192.1|WP_007682112.1|40941_41196_+|hypothetical-protein
MLKLHDFCNRAGARILWCTPVFGQAVGTQHIDEILAVWYPTHKTFLDLSDAPGAKESYRLRGACVAYAVIHRCSGSNSPLDGNG
>NZ_CP005192.1|WP_007682110.1|41281_42172_+|haloalkane-dehalogenase
MSLGAKPFGEKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYTYAEHRDYLDALWEALDLGDRVVLVVHDWGSVLGFDWARRHRERVQGIAYMEAVTMPLEWADFPEQDRDLFQAFRSQAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAGWLSESPIPKLFINAEPGHLTTGRIRDFCRTWPNQTEITVAGAHFIQEDSPDEIGAAIAAFVRRLRPA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP005192_1	1.1\|31147\|42\|NZ_CP005192\|CRISPRCasFinder	31147-31188	42	NZ_CP005192	Sphingobium sp. MI1205 plasmid pMI3, complete sequence	31147-31188	0	1.0
NZ_CP005192_1	1.1\|31147\|42\|NZ_CP005192\|CRISPRCasFinder	31147-31188	42	NZ_CP005087	Sphingobium sp. TKS plasmid pTK3, complete sequence	20315-20356	0	1.0
NZ_CP005192_1	1.1\|31147\|42\|NZ_CP005192\|CRISPRCasFinder	31147-31188	42	NC_020562	Sphingomonas sp. MM-1 plasmid pISP1, complete sequence	159529-159570	0	1.0
NZ_CP005192_1	1.1\|31147\|42\|NZ_CP005192\|CRISPRCasFinder	31147-31188	42	NZ_CP005193	Sphingobium sp. MI1205 plasmid pMI4, complete sequence	18238-18279	0	1.0
NZ_CP005192_1	1.1\|31147\|42\|NZ_CP005192\|CRISPRCasFinder	31147-31188	42	NC_020563	Sphingomonas sp. MM-1 plasmid pISP4, complete sequence	33102-33143	0	1.0
NZ_CP005192_1	1.1\|31147\|42\|NZ_CP005192\|CRISPRCasFinder	31147-31188	42	NZ_CP005088	Sphingobium sp. TKS plasmid pTK4, complete sequence	56281-56322	0	1.0
NZ_CP005192_1	1.1\|31147\|42\|NZ_CP005192\|CRISPRCasFinder	31147-31188	42	NZ_AP017658	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_4, complete sequence	34773-34814	1	0.976
NZ_CP005192_1	1.1\|31147\|42\|NZ_CP005192\|CRISPRCasFinder	31147-31188	42	NZ_CP047220	Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed3, complete sequence	56938-56979	2	0.952

1. spacer 1.1|31147|42|NZ_CP005192|CRISPRCasFinder matches to NZ_CP005192 (Sphingobium sp. MI1205 plasmid pMI3, complete sequence) position: , mismatch: 0, identity: 1.0

accgaccccaaaactcaccgaaggctaccccaacactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaacactcacgc	Protospacer
******************************************

2. spacer 1.1|31147|42|NZ_CP005192|CRISPRCasFinder matches to NZ_CP005087 (Sphingobium sp. TKS plasmid pTK3, complete sequence) position: , mismatch: 0, identity: 1.0

accgaccccaaaactcaccgaaggctaccccaacactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaacactcacgc	Protospacer
******************************************

3. spacer 1.1|31147|42|NZ_CP005192|CRISPRCasFinder matches to NC_020562 (Sphingomonas sp. MM-1 plasmid pISP1, complete sequence) position: , mismatch: 0, identity: 1.0

accgaccccaaaactcaccgaaggctaccccaacactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaacactcacgc	Protospacer
******************************************

4. spacer 1.1|31147|42|NZ_CP005192|CRISPRCasFinder matches to NZ_CP005193 (Sphingobium sp. MI1205 plasmid pMI4, complete sequence) position: , mismatch: 0, identity: 1.0

accgaccccaaaactcaccgaaggctaccccaacactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaacactcacgc	Protospacer
******************************************

5. spacer 1.1|31147|42|NZ_CP005192|CRISPRCasFinder matches to NC_020563 (Sphingomonas sp. MM-1 plasmid pISP4, complete sequence) position: , mismatch: 0, identity: 1.0

accgaccccaaaactcaccgaaggctaccccaacactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaacactcacgc	Protospacer
******************************************

6. spacer 1.1|31147|42|NZ_CP005192|CRISPRCasFinder matches to NZ_CP005088 (Sphingobium sp. TKS plasmid pTK4, complete sequence) position: , mismatch: 0, identity: 1.0

accgaccccaaaactcaccgaaggctaccccaacactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaacactcacgc	Protospacer
******************************************

7. spacer 1.1|31147|42|NZ_CP005192|CRISPRCasFinder matches to NZ_AP017658 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_4, complete sequence) position: , mismatch: 1, identity: 0.976

accgaccccaaaactcaccgaaggctaccccaacactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaaaactcacgc	Protospacer
********************************* ********

8. spacer 1.1|31147|42|NZ_CP005192|CRISPRCasFinder matches to NZ_CP047220 (Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed3, complete sequence) position: , mismatch: 2, identity: 0.952

accgaccccaaaactcaccgaaggctaccccaacactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccctaaaactcacgc	Protospacer
******************************.** ********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

10064 : 55763

Escherichia_phage(30.43%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011627727.1\|10064_12956_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	3.5e-189	38.7
WP_001389365.1\|13249_14014_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_007682392.1\|14055_15426_+	TonB-dependent receptor	NA	NA	NA	NA
WP_015460611.1\|15465_16218_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	4.3e-14	30.5
WP_007682394.1\|16239_16926_+	EthD domain-containing protein	NA	NA	NA	NA
WP_007682395.1\|16925_17288_+	hypothetical protein	NA	NA	NA	NA
WP_001389365.1\|17385_18150_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_007687861.1\|18693_19452_-	esterase	NA	NA	NA	NA
WP_007687863.1\|19928_20132_+	hypothetical protein	NA	NA	NA	NA
WP_001389365.1\|20625_21390_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_062121711.1\|22545_23220_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_062121710.1\|23379_23949_-	hypothetical protein	NA	NA	NA	NA
WP_007685991.1\|24049_25027_-	AAA family ATPase	NA	NA	NA	NA
WP_007685992.1\|25026_26679_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_007685993.1\|26671_27268_-	recombinase family protein	E5FFF9	Burkholderia_phage	4.0e-39	47.8
WP_007685994.1\|27433_28126_+	hypothetical protein	NA	NA	NA	NA
WP_007685995.1\|28154_28607_+	hypothetical protein	NA	NA	NA	NA
WP_015460616.1\|29095_29731_+	AAA family ATPase	A4JWV7	Burkholderia_virus	1.2e-44	52.6
WP_015460617.1\|29756_30038_+	hypothetical protein	NA	NA	NA	NA
WP_015460618.1\|30094_31006_-	replication initiation protein	A0A1V0E006	Clostridioides_phage	3.1e-06	32.3
WP_015460621.1\|32951_33176_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_015460622.1\|33213_33519_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_015460623.1\|33691_36826_+	Ti-type conjugative transfer relaxase TraA	V5UQN3	Mycobacterium_phage	2.9e-11	25.3
WP_015460630.1\|36833_37556_+	hypothetical protein	NA	NA	NA	NA
WP_001389365.1\|37965_38730_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_007682112.1\|38758_39013_+	hypothetical protein	NA	NA	NA	NA
WP_007682110.1\|39098_39989_+	haloalkane dehalogenase	B9U1C3	Vaccinia_virus	3.7e-57	43.0
WP_001389365.1\|40148_40913_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_007682112.1\|40941_41196_+	hypothetical protein	NA	NA	NA	NA
WP_007682110.1\|41281_42172_+	haloalkane dehalogenase	B9U1C3	Vaccinia_virus	3.7e-57	43.0
WP_001389365.1\|42331_43096_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_029987071.1\|43140_43701_+	recombinase family protein	A0A0C4UR34	Shigella_phage	3.0e-36	51.2
WP_007682056.1\|43732_44041_+	BrnT family toxin	NA	NA	NA	NA
WP_007682049.1\|44021_44354_+	BrnA antitoxin family protein	NA	NA	NA	NA
WP_007682041.1\|44815_45490_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	4.3e-05	31.9
WP_145907151.1\|45672_45966_+	hypothetical protein	NA	NA	NA	NA
WP_081440685.1\|45910_46579_-	EthD domain-containing protein	NA	NA	NA	NA
WP_007682039.1\|46624_47386_-	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	8.8e-15	28.2
WP_145902397.1\|47432_47594_-	hypothetical protein	NA	NA	NA	NA
WP_011627729.1\|47650_50608_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.5e-235	44.6
WP_013039114.1\|50747_51341_+	recombinase family protein	A0A1S6L009	Salmonella_phage	2.2e-45	56.6
WP_001389365.1\|52245_53010_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_083536069.1\|53034_53586_+	recombinase family protein	E5FFF9	Burkholderia_phage	4.9e-31	48.0
WP_007686150.1\|53582_54113_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_083536070.1\|54130_54490_+	S24 family peptidase	A0A1W6JNS2	Morganella_phage	2.1e-06	34.1
WP_083536073.1\|54521_55763_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.5e-72	38.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP005193

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP005193_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP005193_1

18214-18303

Orphan

Consensus_repeat	Method
AAAAGTGAGTTTTGGGGTCGAGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP005193_1

>merge|NZ_CP005193|1|18214-18303|CRISPRCasFinder
AAAAGTGAGTTTTGGGGTCGAGTCGCGTGAGTGTTGGGGTAGCCTTCGGTGAGTTTTGGGGTCGGTAAAAGTGAGTTTTGGGGTCGAGTC

>NZ_CP005193|1|1|18214-18303|CRISPRCasFinder
AAAAGTGAGTTTTGGGGTCGAGTC	GCGTGAGTGTTGGGGTAGCCTTCGGTGAGTTTTGGGGTCGGT
AAAAGTGAGTTTTGGGGTCGAGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP005193.1\|WP_038293089.1\|9910_10294_-\|response-regulator	unknown	unknown	gnl\|CDD\|333815
NZ_CP005193.1\|WP_015460622.1\|15906_16212_+\|conjugal-transfer-protein-TraD	unknown	unknown	gnl\|CDD\|368890
NZ_CP005193.1\|WP_017503330.1\|8557_8797_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005193.1\|WP_017503331.1\|8994_9243_+\|DUF4160-domain-containing-protein	unknown	unknown	gnl\|CDD\|379344
NZ_CP005193.1\|WP_015460617.1\|19387_19669_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005193.1\|WP_059153299.1\|20584_21241_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP005193.1\|WP_051035835.1\|10290_10503_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005193.1\|WP_017503332.1\|9229_9643_+\|DUF2442-domain-containing-protein	unknown	unknown	gnl\|CDD\|378424
NZ_CP005193.1\|WP_015460623.1\|12599_15734_-\|Ti-type-conjugative-transfer-relaxase-TraA	unknown	unknown	gnl\|CDD\|237546
NZ_CP005193.1\|WP_015460618.1\|18419_19331_+\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP005193.1\|WP_059153298.1\|21496_22606_+\|TonB-dependent-receptor-plug-domain-containing-protein	unknown	unknown	gnl\|CDD\|238657
NZ_CP005193.1\|WP_007686010.1\|27220_27937_+\|esterase	unknown	unknown	gnl\|CDD\|223477
NZ_CP005193.1\|WP_015460616.1\|19694_20330_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|222854
NZ_CP005193.1\|WP_001389365.1\|22571_23336_+\|IS6-like-element-IS6100-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP005193.1\|WP_013041682.1\|26414_27224_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|131480
NZ_CP005193.1\|WP_007686007.1\|25424_26390_+\|chlorohydroquinone/hydroquinone-1,2-dioxygenase	unknown	unknown	gnl\|CDD\|319934
NZ_CP005193.1\|WP_001389365.1\|10695_11460_+\|IS6-like-element-IS6100-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP005193.1\|WP_015460621.1\|16249_16474_+\|conjugal-transfer-protein-TraD	unknown	unknown	gnl\|CDD\|368890
NZ_CP005193.1\|WP_013041683.1\|24381_25293_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176148
NZ_CP005193.1\|WP_015460630.1\|11869_12592_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP005193.1\|WP_038293089.1\|9910_10294_-\|response-regulator	gnl\|CDD\|333815	pfam00072, Response_reg, Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	1.33288e-14
NZ_CP005193.1\|WP_015460622.1\|15906_16212_+\|conjugal-transfer-protein-TraD	gnl\|CDD\|368890	pfam06412, TraD, Conjugal transfer protein TraD. This family contains bacterial TraD conjugal transfer proteins. Mutations in the TraD gene result in loss of transfer.	8.00175e-11
NZ_CP005193.1\|WP_001389365.1\|22571_23336_+\|IS6-like-element-IS6100-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.97603e-67
NZ_CP005193.1\|WP_017503331.1\|8994_9243_+\|DUF4160-domain-containing-protein	gnl\|CDD\|379344	pfam13711, DUF4160, Domain of unknown function (DUF4160).	2.09534e-06
NZ_CP005193.1\|WP_015460616.1\|19694_20330_-\|AAA-family-ATPase	gnl\|CDD\|222854	PHA02518, PHA02518, ParA-like protein; Provisional.	3.43275e-46
NZ_CP005193.1\|WP_059153299.1\|20584_21241_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.25903e-06
NZ_CP005193.1\|WP_017503332.1\|9229_9643_+\|DUF2442-domain-containing-protein	gnl\|CDD\|378424	pfam10387, DUF2442, Protein of unknown function (DUF2442). This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes the DUF3532 that was found to be related and was merged into this family. Members of this family also fall into the NE0471 N-terminal domain-like superfamily, a family of proteins with a unique fold in SCOP:143880.	2.17525e-13
NZ_CP005193.1\|WP_059153298.1\|21496_22606_+\|TonB-dependent-receptor-plug-domain-containing-protein	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	2.99169e-20
NZ_CP005193.1\|WP_015460618.1\|18419_19331_+\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	1.07935e-25
NZ_CP005193.1\|WP_007686010.1\|27220_27937_+\|esterase	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	9.94465e-08
NZ_CP005193.1\|WP_015460623.1\|12599_15734_-\|Ti-type-conjugative-transfer-relaxase-TraA	gnl\|CDD\|237546	PRK13889, PRK13889, conjugal transfer relaxase TraA; Provisional.	0
NZ_CP005193.1\|WP_013041682.1\|26414_27224_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	2.5407e-50
NZ_CP005193.1\|WP_007686007.1\|25424_26390_+\|chlorohydroquinone/hydroquinone-1,2-dioxygenase	gnl\|CDD\|319934	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.	2.25743e-59
NZ_CP005193.1\|WP_001389365.1\|10695_11460_+\|IS6-like-element-IS6100-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.97603e-67
NZ_CP005193.1\|WP_015460621.1\|16249_16474_+\|conjugal-transfer-protein-TraD	gnl\|CDD\|368890	pfam06412, TraD, Conjugal transfer protein TraD. This family contains bacterial TraD conjugal transfer proteins. Mutations in the TraD gene result in loss of transfer.	6.89947e-14
NZ_CP005193.1\|WP_013041683.1\|24381_25293_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176148	cd08459, PBP2_DntR_NahR_LinR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that are involved in the catabolism of dinitrotoluene, naphthalene and gamma-hexachlorohexane; contains the type 2 periplasmic binding fold. This CD includes LysR-like bacterial transcriptional regulators, DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. DntR from Burkholderia species controls genes encoding enzymes for oxidative degradation of the nitro-aromatic compound 2,4-dinitrotoluene. The active form of DntR is homotetrameric, consisting of a dimer of dimers. NahR is a salicylate-dependent transcription activator of the nah and sal operons for naphthalene degradation. Salicylic acid is an intermediate of the oxidative degradation of the aromatic ring in soil bacteria. LinR positively regulates expression of the genes (linD and linE) encoding enzymes for gamma-hexachlorocyclohexane (a haloorganic insecticide) degradation. Expression of linD and linE are induced by their substrates, 2,5-dichlorohydroquinone (2,5-DCHQ) and chlorohydroquinone (CHQ). The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.01084e-67

>NZ_CP005193.1|WP_015460621.1|16249_16474_+|conjugal-transfer-protein-TraD
MARRERTRHLIELGGLVQKAGLVELADDDRATLYGALLDCTARVQGDDAGNVLALWKRRGKRAFDAEAEGAGNG
>NZ_CP005193.1|WP_015460622.1|15906_16212_+|conjugal-transfer-protein-TraD
MRKVRDYDAELRALNDKAKALKARKVQQLGELVTSTGADALDLDTLAGALLAAVEAADANEKEAWRSRGAAFFQGRGRKAGRRTGGNGEGARQTGAGKEQA
>NZ_CP005193.1|WP_015460623.1|12599_15734_-|Ti-type-conjugative-transfer-relaxase-TraA
MAIYHFSAKVISRANGSSAVASAAYRAAERLHDDRLGRDHDFSNKAGVVHSEILAPEGAPERLNDRATLWNEVEAGEKRKDAQLAREVEFSIPRELNQQQGIQLARDFVEKQFVERGMVADMNVHWDMGKDGQPKPHAHVMLSMREVGPEGFGQKVREWNSTALLQEWRVAWADHVNERLAELDIDARIDHRTLEAQGIDLEPQHKIGPAASRMPEQGLEAERVEDHARIARENGEKIIARPEIALDAIARQQATFTRRDLAQFAFRHSDGKDQFDQVMSAVRSSPELVALGRDGKGEDRFTSRDMIAAEQRLERAAEGLAIDRGHGVADAHVTRALASAEGRGLDLSAEQRGALAHITGDKGLASVVGYAGSGKSAMLGVAREAWEAQGYQVRGAALSGIAAENLEGGSAIASRTIASMEYQWEQGRELLGPRDVLVIDEAGMIGTRQMECVLSHAEQAGAKVVLVGDPEQLQAIEAGAAFRAVTERHGWAEITEIRRQCEDWQRDATKALATGRAGEAIHAYEAHGMVQAAETRELARADLVDRWDAERIAAPDQSRIILTHTNAEVRDLNLAARDRLRDAGELGPDVRVSAERGARDFATGDRIMFLKNERGLGVRNGTLGKVEQVSPERMAVKLDDGRSVAFDLKDYAHVDHGYAATIHKSQGVTVDRAHVLATPGMDRHSAYVALSRHRDGVQLHYGRDDFGDDRRLVRTLSRERAKDMASDYGRDRDAEIRAFADRRGLSGEIRLPERAERSPVEILGPRAGTMRQMGEDPRTVRDAGDRGAGAGQAAAERQPRRGMFDGFRPAPQRPAPESTPAGEREKAAPKRGMFDGLKLSAAPLKGAERAPVPADRGQGRDYARAVERASRSAEAVLQARASGAPVLEHQKVALERTTQALDQIRPGASRDLASAMQRDPALLREAAAGRSGPMIEAMAQEARVRADPNLRADRFVERWQGLKQERDRLYRAGDMAGRERTGKEMAGMAKSLERDPQVELVLRNRTRELGLEIGMGRGRGMNSGDLGRELARDLGIGMGRGMSR
>NZ_CP005193.1|WP_015460630.1|11869_12592_-|hypothetical-protein
MMDEDNYRNNGRAGDDPQAAFEQLRGEVALVRLAVEGLARARESIEIPDYQPTLANTEKILLALTQRVDVIAKSPAMKLTPETMGERVNASVASATGELHNLVNSTRSDMSEAARELRGLIGTTRARWQQDRWLFWIGLGGVVLGILLYALLAGLIARAMPDSWQLPERMATRALAEPTLWDAGTHLMQRASPASWEGIVAAANLARDNRETIEACGAAAAKAKKTVRCTIEVKPANNDR
>NZ_CP005193.1|WP_001389365.1|10695_11460_+|IS6-like-element-IS6100-family-transposase
MTDFKWRHFQGDVILWAVRWYCRYPISYRDLEEMLAERGISVDHTTIYRWVQCYAPEMEKRLRWFWRRGFDPSWRLDETYVKVRGKWTYLYRAVDKRGDTIDFYLSPTRSAKAAKRFLGKALRGLKHWEKPATLNTDKAPSYGAAITELKREGKLDRETAHRQVKYLNNVIEADHGKLKILIKPVRGFKSIPTAYATIKGFEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHFAAAA
>NZ_CP005193.1|WP_051035835.1|10290_10503_-|hypothetical-protein
MFATLMARKGIESLEETANLLGIYAVLTDEIAPDEALILGCWAGMLRDAAEGISVESTNKGGDQQGDQAQ
>NZ_CP005193.1|WP_038293089.1|9910_10294_-|response-regulator
MTSPGTRVSHEAAVLIVEDGPLVRAFAADILMDAGYRVFEACEAADALTILEGRDDIGTVFTDIEMSGMTGLALAGVITEGWPEIAILVTSGRIQPDPGTLPAGAAFIAKPYKADALIGQLAELVAR
>NZ_CP005193.1|WP_017503332.1|9229_9643_+|DUF2442-domain-containing-protein
MAVTEQEFDQAEKRMTELRAAGHAVSARYDRRRARVVVALNTGVELTFPARLAEGLADAPPDALTDIEVSAAGLGLHWPKLDTDLYVPALLQGVFGSKQWMAQQLGAQGGRSRTAAKVAAARANGRKGGRPKKSANG
>NZ_CP005193.1|WP_017503331.1|8994_9243_+|DUF4160-domain-containing-protein
MPTVLRIDGLRVVIYPNDHRPAHVHVKGADGEAVFILHCTDGPPELRESYGFKLPALGGIKDALQAALAALCAEWSAIHGSY
>NZ_CP005193.1|WP_017503330.1|8557_8797_-|hypothetical-protein
MDRPPPSNDDDGSLEGNATARRLAAAKYLLHLMRDPEARQRAIDRLGFDPVEKAAELMREKLGFDPDDYQGQDELANDA
>NZ_CP005193.1|WP_015460618.1|18419_19331_+|replication-initiation-protein
MTRASSPVNNGKAKIALGDDTALTLSQKGRGNPFDPANYGEIVKPGELVDIVELSPLTLADRRIYNLLIANAWERISEPVIHRIAKTALKGTHQGNERIESSLLRLMGTIAIVTIRKGGKSYKRRVQLLGSSDESLEKDGFLHYRIPEELIEILRNSEVYARLKTQVMYCFESKYALCLYEMIERRIGLEYKQSEEFTIAELRGLLNVPEGKLERFADFNKYCLKVAQEEINKLCPFWVEFTPIKKGRKVERVSMMWLPKTMSGRRDAQNLIDQHSIVRRAKLRGDIPEMPVLVDFSAPAAQR
>NZ_CP005193.1|WP_015460617.1|19387_19669_-|hypothetical-protein
MAIARKPNSKPKSPMDEAAADAFIAGAAKPKAEPIATEADEAGQGAEPRKSPVMLRFDRALLAKVDAAAKRRGISRSAWIQFTVSRALDAGEG
>NZ_CP005193.1|WP_015460616.1|19694_20330_-|AAA-family-ATPase
MILAVGNTKGGVGKTTLAVNLAVARALAGRDLLLVDGDEQGTALTFTELRADRLGQAGYTAVALTGAALRSQVRQLAAKYDDIIIDVGGRDTGSLRAALTVADTLLVPVQPRSFDVWALDQVAALVAEAREINEGLRAVAVLNGADAQGADNEAALEMIGDIEGIEVLPTSIVRRKAFPNAAAEGRAVGEQSPRDAKAIDELAALVSAVFV
>NZ_CP005193.1|WP_059153299.1|20584_21241_-|TetR/AcrR-family-transcriptional-regulator
MVREQNKEERRSRILGAAEKLIRELGTVEFSMRELAARAHISHYTSYNLIGNKGTVLYTLLHRAIDRITNLPSQADPNFDPLSYAFDMGDLAVEFYVSDPDFFRPLLRFLFGVSDAELRPAFMNKGVRHWHAVALAIWQSGDLVGHVSPEDFASMINTYFGGALGLWSHDNIDAAVFFAHIRHAMAISLLACGNKQWEARLVAEVAAARAVIRPLSLT
>NZ_CP005193.1|WP_059153298.1|21496_22606_+|TonB-dependent-receptor-plug-domain-containing-protein
MSEVRSLALVTCAVSAALAVPAWGQDGPAAGSGDEIIVTANKRSQNLQDVGLSVSAISGDALKNQQISNLADVAQIVPGLTFSQTANDTPVYTLRGVGFFESTLAAYPDVSVYLDQVPLPFPTLTSLTAFDLDRLEVLKGPQGTLFGQNSTGGAINYIAAKPTSDLSAGGSLSYGRFDTVELEGFLSGPLTNTLRVRLAGRVARGDEWQKSHTRDDRLGKKDTKAIRFLADWKPSERLSFELNLNAWQNKSDPQAPQAIAIVQQNAAIPSDYPALNIAFAPANGRAADWSPGIRPFANNKFRQASLRSDWEVVDDITLTSLTSYVDYDHHQGIEGDGTGSVAKIVKLEHAWRRLDGRNDDGFQVAPFPG
>NZ_CP005193.1|WP_001389365.1|22571_23336_+|IS6-like-element-IS6100-family-transposase
MTDFKWRHFQGDVILWAVRWYCRYPISYRDLEEMLAERGISVDHTTIYRWVQCYAPEMEKRLRWFWRRGFDPSWRLDETYVKVRGKWTYLYRAVDKRGDTIDFYLSPTRSAKAAKRFLGKALRGLKHWEKPATLNTDKAPSYGAAITELKREGKLDRETAHRQVKYLNNVIEADHGKLKILIKPVRGFKSIPTAYATIKGFEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHFAAAA
>NZ_CP005193.1|WP_013041683.1|24381_25293_-|LysR-family-transcriptional-regulator
MNIDDLDFRHLVLLDALLKRHSVSAAARELDLPQPTASHGLARLRKALGDPLLVRARDGMEPTPRAEAIAGVVQQLLELRRDLAEGGQTFSPDRLKREFIIAGSDIAHLVVLTALHSAARFEAPHTSYRALTLSGDEMVSALETGHVDIAVGAYPSLVAGIKTQRLYQEEYLCFGKEGHPFIKSGETDDFMAADHIVVSTKGMAHAHRAVERALLDKIHPDRIRIVASSFLVALAACFESDLILTAPARVIGRLAEVYGLRAVRPPILMEAFEVRQYWHARNQDDPPHRWLRQLLHKVLSARM
>NZ_CP005193.1|WP_007686007.1|25424_26390_+|chlorohydroquinone/hydroquinone-1,2-dioxygenase
MMQLPERVEGLHHITVATGSAQGDVDLLVKTLGQRLVKKTMFYDGARPVYHLYFGNELGEPGTLYTTFPVRQAGYTGKRGAGQISAVSYNAPVGTLSWWQEHLIKRAVTVSEVRERFGQKYLSFEHPDCGVGFEIIEQDTDGQFEPWDSPYVPKEVALRGFHSWTATLNRNEEMDSFMRNAWNLKPQGRDGNYQRYAFGNGGAAKVLDVYIDEDERPGTWALGEGQVHHAAFEVADLDVQAALKFDVEGLGYTDFSDRKHRGYFESIYVRTPGGVLFEASVTLGFTHDESPEKLGSEVKVAPQLEGVKDELLRTMNDPIVI
>NZ_CP005193.1|WP_013041682.1|26414_27224_+|alpha/beta-fold-hydrolase
MKRMWRHRAVNSRNGARIGVHTTGLPSGEPILLLSSLLADWRSWNDVAGRLPSGVYAITMDLRGHGTSSPSAGDYSLAELAADVLNVMDNLAFARVHLVGTSVGSMVAQYLGATAGHRLISLTLVAAGSLVPEPAWPIWDKRVAAVRSGGLITQVPIVYPAWFSGAVDQGLLDLAESMILATTVAGFTGAVAAIKGHDARSLLPQVETPTLVIAGANDAAVPPEAVRATAALIPGAAFEVVTGAAHQVAMQHPVAFADRLCRHIAGAPR
>NZ_CP005193.1|WP_007686010.1|27220_27937_+|esterase
MTFSPEGPYGTIVTGPPVEQANAAIILLHGRGQRAQAMLELARQLDLPSVAWLALQAPAGAWYSPKYDGFDPDGDRSVADACTALAEISSRLEAAWVALDRQGIVGFSQGACLASHFMWCGAAKMGFLGSLTGSLPGFELPTAPVEPRFTGLKAIFTGGLNDDWVKAEHVRETAERFRLSGADVGEYIQPIKDHGIGADEIALLRDTLIARFELNPPVPTRGPRHQPLVPQSTPSLTD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP005193_1	1.1\|18238\|42\|NZ_CP005193\|CRISPRCasFinder	18238-18279	42	NZ_CP005192	Sphingobium sp. MI1205 plasmid pMI3, complete sequence	31147-31188	0	1.0
NZ_CP005193_1	1.1\|18238\|42\|NZ_CP005193\|CRISPRCasFinder	18238-18279	42	NZ_CP005087	Sphingobium sp. TKS plasmid pTK3, complete sequence	20315-20356	0	1.0
NZ_CP005193_1	1.1\|18238\|42\|NZ_CP005193\|CRISPRCasFinder	18238-18279	42	NC_020562	Sphingomonas sp. MM-1 plasmid pISP1, complete sequence	159529-159570	0	1.0
NZ_CP005193_1	1.1\|18238\|42\|NZ_CP005193\|CRISPRCasFinder	18238-18279	42	NZ_CP005193	Sphingobium sp. MI1205 plasmid pMI4, complete sequence	18238-18279	0	1.0
NZ_CP005193_1	1.1\|18238\|42\|NZ_CP005193\|CRISPRCasFinder	18238-18279	42	NC_020563	Sphingomonas sp. MM-1 plasmid pISP4, complete sequence	33102-33143	0	1.0
NZ_CP005193_1	1.1\|18238\|42\|NZ_CP005193\|CRISPRCasFinder	18238-18279	42	NZ_CP005088	Sphingobium sp. TKS plasmid pTK4, complete sequence	56281-56322	0	1.0
NZ_CP005193_1	1.1\|18238\|42\|NZ_CP005193\|CRISPRCasFinder	18238-18279	42	NZ_AP017658	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_4, complete sequence	34773-34814	1	0.976
NZ_CP005193_1	1.1\|18238\|42\|NZ_CP005193\|CRISPRCasFinder	18238-18279	42	NZ_CP047220	Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed3, complete sequence	56938-56979	2	0.952

1. spacer 1.1|18238|42|NZ_CP005193|CRISPRCasFinder matches to NZ_CP005192 (Sphingobium sp. MI1205 plasmid pMI3, complete sequence) position: , mismatch: 0, identity: 1.0

gcgtgagtgttggggtagccttcggtgagttttggggtcggt	CRISPR spacer
gcgtgagtgttggggtagccttcggtgagttttggggtcggt	Protospacer
******************************************

2. spacer 1.1|18238|42|NZ_CP005193|CRISPRCasFinder matches to NZ_CP005087 (Sphingobium sp. TKS plasmid pTK3, complete sequence) position: , mismatch: 0, identity: 1.0

gcgtgagtgttggggtagccttcggtgagttttggggtcggt	CRISPR spacer
gcgtgagtgttggggtagccttcggtgagttttggggtcggt	Protospacer
******************************************

3. spacer 1.1|18238|42|NZ_CP005193|CRISPRCasFinder matches to NC_020562 (Sphingomonas sp. MM-1 plasmid pISP1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgtgagtgttggggtagccttcggtgagttttggggtcggt	CRISPR spacer
gcgtgagtgttggggtagccttcggtgagttttggggtcggt	Protospacer
******************************************

4. spacer 1.1|18238|42|NZ_CP005193|CRISPRCasFinder matches to NZ_CP005193 (Sphingobium sp. MI1205 plasmid pMI4, complete sequence) position: , mismatch: 0, identity: 1.0

gcgtgagtgttggggtagccttcggtgagttttggggtcggt	CRISPR spacer
gcgtgagtgttggggtagccttcggtgagttttggggtcggt	Protospacer
******************************************

5. spacer 1.1|18238|42|NZ_CP005193|CRISPRCasFinder matches to NC_020563 (Sphingomonas sp. MM-1 plasmid pISP4, complete sequence) position: , mismatch: 0, identity: 1.0

gcgtgagtgttggggtagccttcggtgagttttggggtcggt	CRISPR spacer
gcgtgagtgttggggtagccttcggtgagttttggggtcggt	Protospacer
******************************************

6. spacer 1.1|18238|42|NZ_CP005193|CRISPRCasFinder matches to NZ_CP005088 (Sphingobium sp. TKS plasmid pTK4, complete sequence) position: , mismatch: 0, identity: 1.0

gcgtgagtgttggggtagccttcggtgagttttggggtcggt	CRISPR spacer
gcgtgagtgttggggtagccttcggtgagttttggggtcggt	Protospacer
******************************************

7. spacer 1.1|18238|42|NZ_CP005193|CRISPRCasFinder matches to NZ_AP017658 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_4, complete sequence) position: , mismatch: 1, identity: 0.976

gcgtgagtgttggggtagccttcggtgagttttggggtcggt	CRISPR spacer
gcgtgagttttggggtagccttcggtgagttttggggtcggt	Protospacer
******** *********************************

8. spacer 1.1|18238|42|NZ_CP005193|CRISPRCasFinder matches to NZ_CP047220 (Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed3, complete sequence) position: , mismatch: 2, identity: 0.952

gcgtgagtgttggggtagccttcggtgagttttggggtcggt	CRISPR spacer
gcgtgagttttagggtagccttcggtgagttttggggtcggt	Protospacer
******** **.******************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP005191

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5312 : 30230

Escherichia_phage(33.33%)

transposase,integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001389365.1\|5312_6077_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_007684554.1\|6844_7126_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_021246202.1\|7094_7415_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_007684557.1\|7519_7750_+	hypothetical protein	NA	NA	NA	NA
WP_007684562.1\|7779_8043_-	hypothetical protein	NA	NA	NA	NA
WP_013041473.1\|8195_8813_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_007684572.1\|8933_10130_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.9e-80	43.0
WP_004211466.1\|10675_11539_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.4e-29	33.2
WP_007683624.1\|11989_13087_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_007682488.1\|13150_14113_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_007682491.1\|14112_14511_-	hypothetical protein	NA	NA	NA	NA
WP_007682492.1\|14507_14813_-	hypothetical protein	NA	NA	NA	NA
WP_007682494.1\|14812_15202_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_007682496.1\|15198_15447_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_013038665.1\|15615_17019_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_021246208.1\|17011_18850_-	MMPL family transporter	NA	NA	NA	NA
WP_001389365.1\|18878_19643_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_031293519.1\|20003_21377_+	hypothetical protein	NA	NA	NA	NA
WP_020818599.1\|21603_22032_-	hypothetical protein	NA	NA	NA	NA
WP_020818598.1\|22028_22481_-	hypothetical protein	A0A1P8VVG0	Erythrobacter_phage	3.9e-26	50.4
WP_158500939.1\|22981_23821_-	hypothetical protein	NA	NA	NA	NA
WP_020818528.1\|23943_24417_-	hypothetical protein	NA	NA	NA	NA
WP_025160754.1\|24458_24788_-	hypothetical protein	NA	NA	NA	NA
WP_020818526.1\|24850_25378_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_048574958.1\|26003_28235_+	TonB-dependent receptor	NA	NA	NA	NA
WP_020818524.1\|28402_28615_+	hypothetical protein	NA	NA	NA	NA
WP_021224259.1\|28855_29305_+	hypothetical protein	I6NP90	Burkholderia_phage	8.3e-05	37.7
WP_020818522.1\|29315_30230_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA

DBSCAN-SWA_2

66363 : 114183

Lactococcus_phage(40.0%)

transposase,integrase

attL 61457:61471|attR 120099:120113

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
61457:61471	attL	NA	NA	NA	NA
WP_020818477.1\|66363_67563_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_020818476.1\|67583_68237_-	hypothetical protein	NA	NA	NA	NA
WP_020818475.1\|68308_68509_-	hypothetical protein	NA	NA	NA	NA
WP_020818474.1\|68558_71630_-	conjugative relaxase	NA	NA	NA	NA
WP_020818473.1\|71629_73936_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_025160433.1\|73925_74216_-	hypothetical protein	NA	NA	NA	NA
WP_020818471.1\|74770_74989_+	hypothetical protein	NA	NA	NA	NA
WP_020818470.1\|75108_75333_-	hypothetical protein	NA	NA	NA	NA
WP_025160434.1\|75699_76233_-	hypothetical protein	NA	NA	NA	NA
WP_015460598.1\|76786_77050_+	hypothetical protein	NA	NA	NA	NA
WP_020818468.1\|77052_77619_-	hypothetical protein	NA	NA	NA	NA
WP_020818467.1\|77800_78799_-	DUF2493 domain-containing protein	NA	NA	NA	NA
WP_020818466.1\|79469_80072_-	hypothetical protein	NA	NA	NA	NA
WP_020818465.1\|80104_80434_-	hypothetical protein	NA	NA	NA	NA
WP_007015553.1\|80487_80817_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_031297199.1\|81688_82003_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_015460591.1\|82171_82711_-	DUF736 domain-containing protein	NA	NA	NA	NA
WP_015460590.1\|83101_83386_-	hypothetical protein	NA	NA	NA	NA
WP_015460589.1\|83397_84093_-	hypothetical protein	NA	NA	NA	NA
WP_020818773.1\|84405_85077_+	hypothetical protein	NA	NA	NA	NA
WP_015460587.1\|85069_85942_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_015460586.1\|86081_86387_-	hypothetical protein	NA	NA	NA	NA
WP_015460585.1\|86391_86781_-	hypothetical protein	A0A1B1IUL8	uncultured_Mediterranean_phage	8.7e-35	58.7
WP_015460584.1\|86784_87258_-	hypothetical protein	NA	NA	NA	NA
WP_020818772.1\|87254_87773_-	hypothetical protein	NA	NA	NA	NA
WP_020818771.1\|87981_88395_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_020818770.1\|88391_88658_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_020818759.1\|88958_90464_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_020818758.1\|90463_91273_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.4e-26	34.7
WP_062121841.1\|91490_91853_-	dioxygenase	NA	NA	NA	NA
WP_021222964.1\|91918_92347_-	DoxX family protein	NA	NA	NA	NA
WP_020818768.1\|92563_93502_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_020818767.1\|94151_94754_+	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_020818766.1\|95010_95934_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_021222966.1\|96089_96404_+	hypothetical protein	NA	NA	NA	NA
WP_020818764.1\|96400_97567_+	muconate cycloisomerase family protein	Q6A202	Oenococcus_phage	7.7e-10	25.5
WP_020818763.1\|97665_99093_+	sodium:solute symporter family protein	NA	NA	NA	NA
WP_021224462.1\|99168_100050_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_021224463.1\|100385_101159_+	hypothetical protein	NA	NA	NA	NA
WP_020818760.1\|101326_102394_+	maleylacetate reductase	NA	NA	NA	NA
WP_021224464.1\|102472_102619_+	hypothetical protein	NA	NA	NA	NA
WP_020818759.1\|102804_104310_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_020818758.1\|104309_105119_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.4e-26	34.7
WP_020818775.1\|105490_105955_-	DUF736 domain-containing protein	NA	NA	NA	NA
WP_020818778.1\|107919_108273_-	DUF3768 domain-containing protein	L7TKV8	Rhizobium_phage	2.2e-13	43.2
WP_020819456.1\|108975_109434_-	hypothetical protein	NA	NA	NA	NA
WP_025160958.1\|109417_111226_-\|integrase	integrase	NA	NA	NA	NA
WP_020819454.1\|111230_113048_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_025160957.1\|113040_114183_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
120099:120113	attR	NA	NA	NA	NA

DBSCAN-SWA_3

145567 : 166842

Mycobacterium_phage(25.0%)

transposase,integrase

attL 145746:145761|attR 170492:170507

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020819418.1\|145567_146566_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	3.3e-09	28.6
145746:145761	attL	NA	NA	NA	NA
WP_020819416.1\|148405_149050_-	hypothetical protein	NA	NA	NA	NA
WP_020819415.1\|149111_150146_-	hypothetical protein	A0A2P1JZU1	Mycobacterium_phage	1.4e-10	31.3
WP_020819414.1\|150174_150669_+	hypothetical protein	NA	NA	NA	NA
WP_020819413.1\|150704_151211_-	thermonuclease family protein	NA	NA	NA	NA
WP_100239852.1\|151264_151711_-	hypothetical protein	NA	NA	NA	NA
WP_020819411.1\|151862_152069_-	hypothetical protein	NA	NA	NA	NA
WP_020819409.1\|152463_154386_-	hypothetical protein	A0A0U4J920	Pseudomonas_phage	3.7e-25	27.8
WP_020819407.1\|155432_156359_+	cysteine synthase family protein	A0A1W6JHY1	Lactococcus_phage	3.3e-32	35.9
WP_062118092.1\|156763_156988_+	hypothetical protein	NA	NA	NA	NA
WP_020818728.1\|156978_157842_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	2.5e-42	39.0
WP_020818727.1\|158011_160174_-\|integrase	integrase	NA	NA	NA	NA
WP_020818726.1\|160170_161958_-	hypothetical protein	NA	NA	NA	NA
WP_020818725.1\|161954_163304_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_020818724.1\|163697_164690_-\|integrase	site-specific integrase	A0A1P8DJ76	Virus_Rctr85	1.4e-12	32.3
WP_020818723.1\|164686_165628_-\|integrase	tyrosine-type recombinase/integrase	U3PCM7	Lactobacillus_phage	1.4e-06	30.6
WP_020818722.1\|165624_166842_-\|integrase	tyrosine-type recombinase/integrase	W8EHC2	Mycobacterium_phage	4.7e-10	27.4
170492:170507	attR	NA	NA	NA	NA

DBSCAN-SWA_4

188667 : 218263

Salmonella_phage(18.18%)

transposase,integrase

attL 182724:182739|attR 206640:206655

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
182724:182739	attL	NA	NA	NA	NA
WP_020819377.1\|188667_189795_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_031286075.1\|189914_192872_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.7e-234	44.2
WP_020817918.1\|193010_193562_+	recombinase family protein	A0A1S6L009	Salmonella_phage	2.0e-45	56.6
WP_020817919.1\|193558_194347_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_020820238.1\|194516_195326_-	hypothetical protein	NA	NA	NA	NA
WP_020820237.1\|195322_195571_-	hypothetical protein	NA	NA	NA	NA
WP_107395150.1\|195901_196658_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	9.4e-25	42.2
WP_020820236.1\|196753_198190_-	DUF4942 domain-containing protein	A0A1P8VVC9	Erythrobacter_phage	4.7e-25	41.6
WP_020820235.1\|198207_198468_-	hypothetical protein	A0A2I7S8R6	Vibrio_phage	1.9e-06	51.0
WP_020820234.1\|198809_199046_-	hypothetical protein	NA	NA	NA	NA
WP_020820233.1\|199515_200055_-	hypothetical protein	NA	NA	NA	NA
WP_020820232.1\|200051_200261_-	hypothetical protein	NA	NA	NA	NA
WP_020820231.1\|200273_200540_-	hypothetical protein	NA	NA	NA	NA
WP_020820230.1\|200536_200824_-	hypothetical protein	NA	NA	NA	NA
WP_020820229.1\|200835_201225_-	DUF3768 domain-containing protein	L7TKV8	Rhizobium_phage	3.1e-08	35.4
WP_025160929.1\|201552_202833_-	cell filamentation protein Fic	NA	NA	NA	NA
WP_020820227.1\|202836_203097_-	hypothetical protein	NA	NA	NA	NA
WP_139385176.1\|203704_204875_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.1e-35	37.6
WP_020820224.1\|204949_205321_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.3e-07	29.4
WP_020820223.1\|205317_205731_-\|transposase	transposase	NA	NA	NA	NA
WP_020820222.1\|205810_206302_+\|transposase	transposase	NA	NA	NA	NA
WP_021222989.1\|206434_207805_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	7.5e-89	39.6
206640:206655	attR	NA	NA	NA	NA
WP_079640072.1\|207924_208569_+\|transposase	transposase	NA	NA	NA	NA
WP_001389365.1\|208706_209471_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_013041683.1\|210540_211452_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_013041682.1\|212573_213383_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_007686010.1\|213379_214096_+	esterase	NA	NA	NA	NA
WP_007686013.1\|214103_214736_+	hypothetical protein	NA	NA	NA	NA
WP_013035740.1\|214795_215836_+	2,5-dichlorohydroquinone reductive dechlorinase	NA	NA	NA	NA
WP_013041681.1\|215949_216915_+	oxidoreductase	NA	NA	NA	NA
WP_145902396.1\|217187_217457_-	hypothetical protein	NA	NA	NA	NA
WP_001389365.1\|217498_218263_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP005190

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

140373 : 181043

Escherichia_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031291306.1\|140373_141186_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_007687848.1\|141271_141487_+	hypothetical protein	NA	NA	NA	NA
WP_020820199.1\|141725_142688_-	ring-cleaving dioxygenase	NA	NA	NA	NA
WP_007687852.1\|142909_143899_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_007687859.1\|144225_145284_+	maleylacetate reductase	NA	NA	NA	NA
WP_007687861.1\|145395_146154_-	esterase	NA	NA	NA	NA
WP_007687863.1\|146630_146834_+	hypothetical protein	NA	NA	NA	NA
WP_062121709.1\|146978_147350_+	glutathione S-transferase	NA	NA	NA	NA
WP_001389365.1\|147321_148086_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_013035740.1\|148489_149530_-	2,5-dichlorohydroquinone reductive dechlorinase	NA	NA	NA	NA
WP_007686013.1\|149589_150222_-	hypothetical protein	NA	NA	NA	NA
WP_007686010.1\|150229_150946_-	esterase	NA	NA	NA	NA
WP_013041682.1\|150942_151752_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_007686007.1\|151776_152742_-	chlorohydroquinone/hydroquinone 1,2-dioxygenase	NA	NA	NA	NA
WP_013041683.1\|152873_153785_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_007685998.1\|153879_156435_-	TonB-dependent receptor	NA	NA	NA	NA
WP_007685997.1\|156626_157151_-	hypothetical protein	NA	NA	NA	NA
WP_007685995.1\|157367_157820_-	hypothetical protein	NA	NA	NA	NA
WP_007685994.1\|157848_158541_-	hypothetical protein	NA	NA	NA	NA
WP_007685993.1\|158706_159303_+	recombinase family protein	E5FFF9	Burkholderia_phage	4.0e-39	47.8
WP_007685992.1\|159295_160948_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_007685991.1\|160947_161925_+	AAA family ATPase	NA	NA	NA	NA
WP_062121710.1\|162025_162595_+	hypothetical protein	NA	NA	NA	NA
WP_062121711.1\|162754_163429_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_062121712.1\|163684_164626_+	TonB-dependent receptor plug domain-containing protein	NA	NA	NA	NA
WP_001389365.1\|164591_165356_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_007687863.1\|165849_166053_-	hypothetical protein	NA	NA	NA	NA
WP_007687861.1\|166529_167288_+	esterase	NA	NA	NA	NA
WP_001389365.1\|167831_168596_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_007682395.1\|168693_169056_-	hypothetical protein	NA	NA	NA	NA
WP_007682394.1\|169055_169742_-	EthD domain-containing protein	NA	NA	NA	NA
WP_015460611.1\|169763_170516_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	4.3e-14	30.5
WP_007682392.1\|170555_171926_-	TonB-dependent receptor	NA	NA	NA	NA
WP_001389365.1\|171967_172732_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_007682039.1\|173805_174567_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	8.8e-15	28.2
WP_081440685.1\|174612_175281_+	EthD domain-containing protein	NA	NA	NA	NA
WP_145907151.1\|175225_175519_-	hypothetical protein	NA	NA	NA	NA
WP_007682041.1\|175701_176376_+\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	4.3e-05	31.9
WP_007682049.1\|176837_177170_-	BrnA antitoxin family protein	NA	NA	NA	NA
WP_007682056.1\|177150_177459_-	BrnT family toxin	NA	NA	NA	NA
WP_029987071.1\|177490_178051_-	recombinase family protein	A0A0C4UR34	Shigella_phage	3.0e-36	51.2
WP_001389365.1\|178095_178860_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_062121713.1\|179019_179910_-	haloalkane dehalogenase	B9U1C3	Vaccinia_virus	7.1e-56	42.3
WP_007682112.1\|179995_180250_-	hypothetical protein	NA	NA	NA	NA
WP_001389365.1\|180278_181043_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP005188

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP005188_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP005188_1

552110-552198

Orphan

Consensus_repeat	Method
CGCGAATATCGCAAGGATGTGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP005188_1

>merge|NZ_CP005188|1|552110-552198|CRISPRCasFinder
CGCGAATATCGCAAGGATGTGCGCGAAGCGCGGCGCGAACGGGACAAGGATCGCCGCGAATCCCGGCGCGAATATCGCAAGGACGTGCG

>NZ_CP005188|1|1|552110-552198|CRISPRCasFinder
CGCGAATATCGCAAGGATGTGCG	CGAAGCGCGGCGCGAACGGGACAAGGATCGCCGCGAATCCCGG
CGCGAATATCGCAAGGACGTGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP005188.1\|WP_081570365.1\|555721_555901_+\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|237038
NZ_CP005188.1\|WP_062113703.1\|542872_543379_+\|porin-family-protein	unknown	unknown	gnl\|CDD\|379226
NZ_CP005188.1\|WP_062113707.1\|544511_544916_-\|endonuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|238509
NZ_CP005188.1\|WP_037465527.1\|553539_553902_+\|ArsC-family-reductase	unknown	unknown	gnl\|CDD\|239333
NZ_CP005188.1\|WP_083535814.1\|555933_556992_+\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NZ_CP005188.1\|WP_037465524.1\|553954_554380_+\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NZ_CP005188.1\|WP_037465538.1\|550086_551142_+\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|236591
NZ_CP005188.1\|WP_062113738.1\|558081_558381_+\|integration-host-factor-subunit-alpha	unknown	unknown	gnl\|CDD\|178961
NZ_CP005188.1\|WP_145902216.1\|551175_551790_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005188.1\|WP_062120190.1\|549743_549998_-\|DUF2171-domain-containing-protein	unknown	unknown	gnl\|CDD\|370756
NZ_CP005188.1\|WP_062113729.1\|553153_553534_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100011
NZ_CP005188.1\|WP_062113735.1\|556988_557957_+\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NZ_CP005188.1\|WP_062113705.1\|543591_544509_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP005188.1\|WP_062113726.1\|552712_553018_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005188.1\|WP_062113715.1\|547744_549679_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236378
NZ_CP005188.1\|WP_062113700.1\|541729_542458_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226602
NZ_CP005188.1\|WP_062113710.1\|544989_546510_-\|fumarate-hydratase	unknown	unknown	gnl\|CDD\|224862
NZ_CP005188.1\|WP_062120194.1\|555080_555509_-\|GST-like-protein	unknown	unknown	gnl\|CDD\|226311
NZ_CP005188.1\|WP_062113713.1\|546572_547217_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NZ_CP005188.1\|WP_062113731.1\|554419_555076_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293823

Protein	Function_ID	Function_description	E-value
NZ_CP005188.1\|WP_081570365.1\|555721_555901_+\|50S-ribosomal-protein-L32	gnl\|CDD\|237038	PRK12286, rpmF, 50S ribosomal protein L32; Reviewed.	3.63345e-27
NZ_CP005188.1\|WP_062113703.1\|542872_543379_+\|porin-family-protein	gnl\|CDD\|379226	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	2.32597e-11
NZ_CP005188.1\|WP_062113707.1\|544511_544916_-\|endonuclease-domain-containing-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	2.43086e-34
NZ_CP005188.1\|WP_037465527.1\|553539_553902_+\|ArsC-family-reductase	gnl\|CDD\|239333	cd03035, ArsC_Yffb, Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.	1.8365e-52
NZ_CP005188.1\|WP_083535814.1\|555933_556992_+\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	4.66937e-162
NZ_CP005188.1\|WP_037465524.1\|553954_554380_+\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	5.02729e-42
NZ_CP005188.1\|WP_037465538.1\|550086_551142_+\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|236591	PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	6.49575e-150
NZ_CP005188.1\|WP_062113738.1\|558081_558381_+\|integration-host-factor-subunit-alpha	gnl\|CDD\|178961	PRK00285, ihfA, integration host factor subunit alpha; Reviewed.	2.41936e-51
NZ_CP005188.1\|WP_062120190.1\|549743_549998_-\|DUF2171-domain-containing-protein	gnl\|CDD\|370756	pfam09939, DUF2171, Uncharacterized protein conserved in bacteria (DUF2171). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.0914e-18
NZ_CP005188.1\|WP_062113729.1\|553153_553534_+\|RidA-family-protein	gnl\|CDD\|100011	cd06154, YjgF_YER057c_UK114_like_6, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	4.83892e-56
NZ_CP005188.1\|WP_062113735.1\|556988_557957_+\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	1.54876e-179
NZ_CP005188.1\|WP_062113705.1\|543591_544509_-\|EamA-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	0.000491719
NZ_CP005188.1\|WP_062113715.1\|547744_549679_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236378	PRK09102, PRK09102, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP005188.1\|WP_062113700.1\|541729_542458_-\|hypothetical-protein	gnl\|CDD\|226602	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion].	1.54778e-41
NZ_CP005188.1\|WP_062113710.1\|544989_546510_-\|fumarate-hydratase	gnl\|CDD\|224862	COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion].	5.39746e-134
NZ_CP005188.1\|WP_062120194.1\|555080_555509_-\|GST-like-protein	gnl\|CDD\|226311	COG3788, COG3788, Uncharacterized relative of glutathione S-transferase, MAPEG superfamily [General function prediction only].	2.82097e-19
NZ_CP005188.1\|WP_062113713.1\|546572_547217_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	2.70571e-33
NZ_CP005188.1\|WP_062113731.1\|554419_555076_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293823	cd07737, YcbL-like_MBL-fold, Salmonella enterica serovar typhimurium YcbL and related proteins; MBL-fold metallo hydrolase domain. This subgroup includes Salmonella enterica serovar typhimurium YcbL which has type II hydroxyacylglutathione hydrolase (EC 3.1.2.6, also known as glyoxalase II) activity, and has a single metal ion binding site, and Thermus thermophilus TTHA1623 which does not have GLX2 activity and has two metal ion binding sites with a glyoxalase II-type metal coordination. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	3.52619e-104

>NZ_CP005188.1|WP_145902216.1|551175_551790_+|hypothetical-protein
MAKVPAHCGHCGLQFYSENFIGGSGASGITLKGNRTNCPRCGGWANLADGIFNLHDDQLELVDGPPLTRAMMAQLRLIAEKAKLKAADAEELLAEVAEVSPELAEKIRGRGLPYFVIVLLIIWLIKSVNLNVTVDLNRLIDQAVGAEQSEKPDQLFDIPLPNQPELSPSGSLVYETEIAPLSRQVRRQLERQAHKAYWPKQRDA
>NZ_CP005188.1|WP_037465538.1|550086_551142_+|ribonucleotide-diphosphate-reductase-subunit-beta
MPLLQASKVYKPFEYPWAYEYWKRQQQLHWLPEEVPLGEDCRDWAQKLSDHERNLLTQIFRFFTQADVEVQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESEYSAFLQYKEMRDKHDYLQQFGVDTDEDIARTLAMFGGFTEGLQLFASFAMLMNFPRFNKMKGMGQIVTWSVRDETLHCEGIIKLFHAFCAERGCLTPAVKDDIMDMCQKTVRIEDAFVDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDDHPLPWLAPLLNGVEHANFFETRATEYSKGATRGQWNEVWDAFDRRKKLKSGDAANADEVADPDMFKAAGIAAE
>NZ_CP005188.1|WP_062120190.1|549743_549998_-|DUF2171-domain-containing-protein
MVDLSSIKEHADIIGADGVHVGTVDHVQGDRIKLVKADSGEGSHAGHHHYISEGLIAGIDEDGTVRLSATGANAVLFEEEEDER
>NZ_CP005188.1|WP_062113715.1|547744_549679_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MDFRDSEQTGASDVATVIDEVIETVAEKKKAAPAKEAPRSSSSIQARRFDVVTDESRDALLTEFGKDTLKDRYLLPGENYQDLFARVAAAYADDQGHAQRVYDYISRLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTYWGSVRGIGEPVGLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEIRKPSGDFNRKALNLHHGVLLTDEFMRAVHNGDEFQLKSPKDGSVRGKVDARSLFQKLVETRLATGEPYIVFSDTVNNTMPKHHRDLGLKVSTSNLCSEITLPTGRDHLGKDRTAVCCLSSLNLETWDEWNKDAVFVEDVMRFLDNVLQDYIDRAPDEMARAKYSAERERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRIFKHINEKVNEASMQLAVERGPCPDAADMGVMERFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFVVKNPYLEKILRDKSKDSTNVWNTILERGGSVQHLDFLSQEEKDTFKTSFEIDQRWLLELAADRTPYIDQAQSLNLFIPADVEKWDLLMLHYRAWELGIKSLYYLRSKSVQRAGFAGGVEADNTIDAPKFELAGGSTDYDECLACQ
>NZ_CP005188.1|WP_062113713.1|546572_547217_-|glutathione-S-transferase-family-protein
MILYYHPLSSYCWKALIALYENDVPFDRAMMENPGVADAWLALWPLGKFPVLRDQARDRTLAETSVIIEYLGQHCPGPFRAIPADPDDAIEVRLMDRLFDNYVMAPMQAIVADRLRPEEARDPYGVGEARLMLGKAYALLEERMKGRHWAAGNMFSLADCAAAPALFYADKVEPMRGGFPTLAAYLDRLETRPSFARVLEEKEPWWHMFPFAAG
>NZ_CP005188.1|WP_062113710.1|544989_546510_-|fumarate-hydratase
MTVIKTADLIESVADALQFISYYHPMDYIRALGKAYEAEANPAAKDAIAQILTNSRMCAEGHRPICQDTGIVNVFIKWGMDCRLDDNSRSMQDVVDEGVRRAYLNPENRLRASILRDPAFSRVNTKDNTPCVLNVEMVPGNKVTVDVAAKGGGSENKTKFKMMNPSDSIVDWVLDMVPQMGAGWCPPGMLGIGIGGTAEKAVALAKESLMEPIDMGELKARGPQNDIERLRIEIFDKVNALGIGAQGLGGLATVLDVKIYDYPCHAAGKPVAMIPNCAATRHAHFTLDGSGPAYLEAPKLSEWPQVDWKPSKEAIRVDLDTLTPEVVQSWKHGDRLLLNGKMLTGRDAAHKRIADMLERGEQLPVDFKGRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFMDMMLEQGLAACVGKAERGPAATDSIAKHKSAYLMAVGGAAYLVARAIKGAKVVGFEDLGMEAIYEFDVQDMPVTVAVDSDGQNVHRLAPLVWQEKIKREHLLEKA
>NZ_CP005188.1|WP_062113707.1|544511_544916_-|endonuclease-domain-containing-protein
MPPRRKTVEFARNLRRVMSPPEVALWQWLRSRPQGMKFRRQHPAGLYVLDFYCASARLAVEVDGSSHDQTSQIAQDERRDAWLKAQGIWMLRVKAADVLHDLDNVMLHILHHCRALPLHQPAAGPPPHAKHGED
>NZ_CP005188.1|WP_062113705.1|543591_544509_-|EamA-family-transporter
MITSSVWLPATLLAGATQAWRTAIQRRVSHRLSVNAAGLVRYLYGLPFALGLLGGYRLLVPGPLPSADPLFLLFCLGGGLAQIIATNLLILAFAHRNFVVGTAYSKTEAVQGAALSFLLMGERLNPLAWTGIGCGVIGVMLLSTGGKRMGPADFMKALGQPAALTGIASGFFFALTAVAIRRATQEVGGSDPILAALIVLVVTVALQTLMQGGYLLAREAGELRKVLATWRVSGQVGLLSALGSACWFTGFATAPVALVRIVGQIEVAFTLGFGHFYLGERMSRSEVAGLLLVVGGVVLALAGAL
>NZ_CP005188.1|WP_062113703.1|542872_543379_+|porin-family-protein
MKTVIFAAIAAAAVAAPAFAQDAAPFTGPRAGVTVGYDNLGNEGVSYGVSAGYDIALTPNVTFGPEVTLGDSSVDSAGTEVSRDLAASVRLGYILTPQVLAFGKVGYASTRLEASNSNLGFALEGVRFGGGLEYAINGNTYISAEYQRTEYEDNGSRDAGVVGIGFRF
>NZ_CP005188.1|WP_062113700.1|541729_542458_-|hypothetical-protein
MVGPSSHVAPPTSIVLRHRWPVRLWHWLNALLLYVLFTSGLGIFNAHPRLYWGQYGANFDHAWLQLERFGGWITLPGHYDLAMSRHWHLAAAPVFAFALLAYMLWALLKGHIARDLAFRREDLAPRHILRDIVNHARLRFPTGEAALRYNVLQKASYIAIIFVALPLLILTGLTMSPGMNAAWPWLVDLFGGRQSARSIHFIMAFALATFFLVHIIMVLLAGPVNELRSMITGRYRLPKERP
>NZ_CP005188.1|WP_062113726.1|552712_553018_-|hypothetical-protein
MNQDDKDRLPDQIEENDEQRDSGTQAQDVAGDARVRSTDLSEDSERGGRPNPAQIIPDDTPDLVERMEEMNRSGRIDNDAFAGEPQMDDEEEYLGRTENEE
>NZ_CP005188.1|WP_062113729.1|553153_553534_+|RidA-family-protein
MSRKLISSGSPFEAQVGYSRAVVQGDWCFVAGTTGTDPETKAMPESVVDQGVNALKVIGKALEDAGFSFADVVRVTYYITDPAYWDELGKATAPVFGDIRPAASCIVTGLIKPEMKIEIEVTAFKG
>NZ_CP005188.1|WP_037465527.1|553539_553902_+|ArsC-family-reductase
MITMYGIKNCDTIKKARNFLDNERVAYNFHDYKVSGVDKAKLEDWVMEHGWETILNRSGTTFKALDAGDKAHIDAEKAILLMTANPSMIKRPILDVGGQAIVGFKATTYETALAKAKTKA
>NZ_CP005188.1|WP_037465524.1|553954_554380_+|Rrf2-family-transcriptional-regulator
MLSQKTRYAIRALQHLADRYRQGPVPLNEIATRQNIPAKFLTVILSEMAREGLVATQRGRDGGYWLALAPVDISYGDIVRLTRGSLALTPCASRFAHETCTNCLPESECRLHRVMLRVRDETAKVLDSISLAEPLAMEEAG
>NZ_CP005188.1|WP_062113731.1|554419_555076_+|MBL-fold-metallo-hydrolase
MTMPPLKAALIPVTPLQQNCTLLWCTATNRGAFVDPGGDLPRLKAAAEQHGVTIEKILVTHGHIDHCGEAGVLAKELGVPIEGPHEADRFWISQLEEDGRKYGIQGQLFEPDRWLTDGDKVHVGDLELDVYHCPGHTPGHVVFHHAPSKLAIVGDVLFQGSIGRTDFPMGNHQQLIDAITGKLWPLGGDTAFVPGHGPMSNFAHERRSNPFVGDAVLG
>NZ_CP005188.1|WP_062120194.1|555080_555509_-|GST-like-protein
MLLPITLTLAAACALLNLWLAFRCARIRVGSKTLHGDGGNPLLARRIRAHANFTEYTPIVLILFALVELAIGSPLWLWIGALVYVVARAAHGIGMDADRPTVWRAGGALLSWAVTAALAATALYVAYHATRAVPAPPAMAAR
>NZ_CP005188.1|WP_081570365.1|555721_555901_+|50S-ribosomal-protein-L32
MAVPKRKTSPSRRGMRRSHDALRVEAFQECSNCGELKRPHNLCDACGHYNGREVVAVGA
>NZ_CP005188.1|WP_083535814.1|555933_556992_+|phosphate-acyltransferase-PlsX
MSSQPRIAIDAMGGDEGVRVMMAGVALARHRHEGLRFTLFGDETRIKAALDHHPNLRAASEVVHASDVVAAGDKPSAAIRKKASSMSMAIAAVKAGEAGAAVSSGNTGALMAMAKVALRTMPGVDRPALAALLPTLGANDVVMLDLGANTECDARNLVQFAVMGAAYARIAFDLERPRVRLMNIGTEDMKGTEEIRDAAAMLRAATNLPLSFDGFTEGDKIGRGEADVIVSDGFSGNVALKTAEGTARFVTDLLRTAFTSSIRSKIGFLISKPAMHLLKHHLDPNNHNGAVFLGLNGVVVKSHGSANDKGVANAVHVAARLLEEDITRRIAADMAGVRALSAVASKQELAAK
>NZ_CP005188.1|WP_062113735.1|556988_557957_+|ketoacyl-ACP-synthase-III
MIRRSILLGTGSALPARAVSNAELAQTVDTSDEWIVERTGIRNRHIAGEGETTASLATDAARAALDAAGLTGQDIDLIILATATPDQTFPASATLVQAALGIDDCVAFDVAAVCSGFLYAVTVADSMIRSGAANRALVIGSETFSRILDWEDRTTCVLFGDGAGAIVLGGEESADGARGILAAKLHADGRHNQLLYVDGGPSTTQTVGKLRMKGQEVFRHAVVNLAGVLTEVMAMADLSTADIDWLIPHQANARILDATARKLKLSPDRVVMTVDRHANTSAASVPLALDVAIRDGRVQAGDLLVLEAMGGGFTWGACVLRV
>NZ_CP005188.1|WP_062113738.1|558081_558381_+|integration-host-factor-subunit-alpha
MTGHATLTRADLAESVNRHIGLSRSEAAALIESILEHMTSALERGENVKISSFGTFVLRDKTQRMGRNPKTGVEVPIEPRRVLTFRASQTMRDRVAAAS

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Crispr_ID: NZ_CP005188_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP005188_2

2380574-2380762

Orphan

Consensus_repeat	Method
GGAAGCCACTTGCAAGGTCGCCTTGGA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP005188_2

>merge|NZ_CP005188|2|2380574-2380762|CRISPRCasFinder
GGATATAATTTGCAGCGTCGCTTTGGAAACTTCTAACAGGTCCAGATATGGGCCCGAAACCACTTGTAGCGTGGCCTTGGATATTGACATGAACCCAAAAGACGGCCCGGAAGCCACTTGCAAGGTCGCCTTGGAGACAAAGATTTTCTCGGACGGCGGGCTGGAAGCGACTTGCAAGGTCGCCTTGGA

>NZ_CP005188|2|2|2380574-2380762|CRISPRCasFinder
GGATATAATTTGCAGCGTCGCTTTGGA	AACTTCTAACAGGTCCAGATATGGGCC
CGAAACCACTTGTAGCGTGGCCTTGGA	TATTGACATGAACCCAAAAGACGGCCC
GGAAGCCACTTGCAAGGTCGCCTTGGA	GACAAAGATTTTCTCGGACGGCGGGCT
GGAAGCGACTTGCAAGGTCGCCTTGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP005188.1\|WP_062117625.1\|2390867_2391494_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005188.1\|WP_062120806.1\|2379339_2379825_-\|lysozyme	unknown	unknown	gnl\|CDD\|381599
NZ_CP005188.1\|WP_062120804.1\|2375880_2376600_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|237800
NZ_CP005188.1\|WP_145902265.1\|2392693_2392924_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005188.1\|WP_062117591.1\|2378956_2379343_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005188.1\|WP_062117608.1\|2382421_2385661_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379255
NZ_CP005188.1\|WP_145902332.1\|2375030_2375336_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005188.1\|WP_062117614.1\|2386102_2387173_-\|DUF2163-domain-containing-protein	unknown	unknown	gnl\|CDD\|378314
NZ_CP005188.1\|WP_062117583.1\|2376946_2377798_-\|DNA-adenine-methylase	unknown	unknown	gnl\|CDD\|223415
NZ_CP005188.1\|WP_037464161.1\|2375446_2375626_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005188.1\|WP_062117628.1\|2391501_2392665_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005188.1\|WP_062117588.1\|2378636_2378957_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005188.1\|WP_062117594.1\|2380014_2380455_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005188.1\|WP_062117585.1\|2378154_2378637_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005188.1\|WP_062117622.1\|2390547_2390742_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005188.1\|WP_062117617.1\|2387169_2387796_-\|DUF2460-domain-containing-protein	unknown	unknown	gnl\|CDD\|378152
NZ_CP005188.1\|WP_062117602.1\|2380773_2381745_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005188.1\|WP_083535887.1\|2381741_2382413_-\|DUF2793-domain-containing-protein	unknown	unknown	gnl\|CDD\|371324
NZ_CP005188.1\|WP_158511172.1\|2376748_2376904_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005188.1\|WP_062117619.1\|2387792_2390543_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377708

Protein	Function_ID	Function_description	E-value
NZ_CP005188.1\|WP_062120806.1\|2379339_2379825_-\|lysozyme	gnl\|CDD\|381599	cd00737, lyz_endolysin_autolysin, endolysin and autolysin. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.	1.37175e-51
NZ_CP005188.1\|WP_062120804.1\|2375880_2376600_+\|glycosyltransferase	gnl\|CDD\|237800	PRK14716, PRK14716, glycosyl transferase family protein.	4.51379e-87
NZ_CP005188.1\|WP_062117619.1\|2387792_2390543_-\|hypothetical-protein	gnl\|CDD\|377708	pfam06791, TMP_2, Prophage tail length tape measure protein. This family represents a conserved region located towards the N-terminal end of prophage tail length tape measure protein (TMP). TMP is important for assembly of phage tails and involved in tail length determination. Mutated forms TMP cause tail fibers to be shortened.	0.00153023
NZ_CP005188.1\|WP_062117617.1\|2387169_2387796_-\|DUF2460-domain-containing-protein	gnl\|CDD\|378152	pfam09343, DUF2460, Conserved hypothetical protein 2217 (DUF2460). This model represents a family of conserved hypothetical proteins. It is usually (but not always) found in apparent phage-derived regions of bacterial chromosomes.	2.87904e-68
NZ_CP005188.1\|WP_083535887.1\|2381741_2382413_-\|DUF2793-domain-containing-protein	gnl\|CDD\|371324	pfam10983, DUF2793, Protein of unknown function (DUF2793). This is a bacterial family of proteins with unknown function.	4.54327e-16
NZ_CP005188.1\|WP_062117608.1\|2382421_2385661_-\|hypothetical-protein	gnl\|CDD\|379255	pfam13550, Phage-tail_3, Putative phage tail protein. This putative domain is found in the large gene transfer agent protein. These produce defective phage like particles. This domain is similar to other phage-tail protein families.	4.3621e-14
NZ_CP005188.1\|WP_062117614.1\|2386102_2387173_-\|DUF2163-domain-containing-protein	gnl\|CDD\|378314	pfam09931, DUF2163, Uncharacterized conserved protein (DUF2163). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.36636e-30
NZ_CP005188.1\|WP_062117583.1\|2376946_2377798_-\|DNA-adenine-methylase	gnl\|CDD\|223415	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair].	3.07585e-23

>NZ_CP005188.1|WP_062117594.1|2380014_2380455_-|hypothetical-protein
MPDPGAGGISSGEVGGVLAGVVAMGVAVGKGLAWLINWRDVRASTRSAKLDKWHEELARREKDLDDKLDHRMNGLERQVGDLTVAVDKWRMAFHMVAAELLQRHPQSAALMQAQKILAEAFPIHLAVPEDMARALGRIDEADAGRL
>NZ_CP005188.1|WP_062120806.1|2379339_2379825_-|lysozyme
MKCSAAGVALIHSFEQLRLVAYPDPGSANGLPITNGWGTTRDENGGPIPRGAKWDKPKADRLFARDLVAVEIGVNTLLNGAPTTQTQFDALVSFAYNVGLDMDGDGKAEGLGDSTLLRKHKAGDYACAAAEFPKWDKNDGKVMAGLRRRRAAERAMYEGRS
>NZ_CP005188.1|WP_062117591.1|2378956_2379343_-|hypothetical-protein
MNEARKKAVYVGAPACFALEAECQLLNQAFPGSCYLVGSSLERPDWRDIDVRMIMDDEAFSGLFPHAKEHWEFDPRWIVMTVAISERLSKQTGLPVDFQFQPRTHANKRHSGPRNALGLIFARHGEEG
>NZ_CP005188.1|WP_062117588.1|2378636_2378957_-|hypothetical-protein
MTLLPDTAAWTARDWRRLVGIVFLGAGGIACTVIAWRALTLLAEKSTGPWPVAYFAYGCLILIGIVLTGLSAILGRRTFKLKVGGNTVESVGEEAADRIQAAAEKA
>NZ_CP005188.1|WP_062117585.1|2378154_2378637_-|hypothetical-protein
MGAFFSRIWPHLLVVAAVLGGLWYVDHRGYQRARKDFQMDQLKIRAMFDGLLRDSEGRMAGVIRFQDRDLADKIAAVKVYHRTIIQPAIEKEIAHDPALARPDARMSDGLWRQLNAALAGSACSRRADGGIECALPAAATVARPDVGDAGAGDVAERRTE
>NZ_CP005188.1|WP_062117583.1|2376946_2377798_-|DNA-adenine-methylase
MESSHLFDDFVQPVSPPAAYIGGKRRLSRMLVRAIERIPHHSYCEVFMGMGGVFLRRTRRPGAEYINDWSEDVSTFFRILQRHYVAFLDMLRFQLTTRSGFEKLLRVDPSTQTDLERAARFLYLQRLAFGGKVAGRNFGVDPMNSGGFDVTRLAPMLEQLHERLASVTIERLRWHDFIRRYDRPDTLFYLDPPYFGSEGDYGADLFDRSQFSTMAEQLSTIEGRFLLSINDCPEIRQLFGAFQMVEVDLLYSIGSGSPTDARELVISNVDMPLNRLLGASESG
>NZ_CP005188.1|WP_158511172.1|2376748_2376904_-|hypothetical-protein
MSDSREAEQAVAAFFHHTRAAKKKAAKARPKGEPPMHHRANTDWWNCINRS
>NZ_CP005188.1|WP_062120804.1|2375880_2376600_+|glycosyltransferase
MAQSLTAVLAIIYQEILLFAVVGLAIGGIDDFLVDIMFLVRRWWRNLTVYSRHTRMTTATLPPSETPGRIAVFIPAWGEAEVIGPMLRNALGQWSEGDYRIFVGVYPNDPATLAAVAKVADGDDRLVLCVNERPGPTTKADCLNLLWRTMVTQEDLSSTRFKAVVLHDAEDVVHADEIRLFDLLIDRFQLVQLPVLPLPGEGSWWSRSIANHYCDEFAEPRWPLAYLNDNEQKRPSKAA
>NZ_CP005188.1|WP_037464161.1|2375446_2375626_-|hypothetical-protein
MTGDMDVNYLLHRQQVSLIRAQMSRSKKGRAAYEGLARGYTDQIDAYREENARMVNIPH
>NZ_CP005188.1|WP_145902332.1|2375030_2375336_-|hypothetical-protein
MVALPAGALLLSSCATVSPESRLRTGLIEAGLSPRMARCMSQRMADRLSLIQLRRLQSLASIRKSRMEEMTVDRFLYKVRALEDPEIFMVTSKAAIVCAIS
>NZ_CP005188.1|WP_062117602.1|2380773_2381745_-|hypothetical-protein
MSIVFAATEASGVRIAGTMAEDTATTAARRTANSRASLASPDGTALGTIALGSALTECWLHAITYAGAWDDDQNDYIVLVKDTSANNVFRVYTTSPGVFWAQYWNGSAWTSVGSSWTITGGQSSYAIYLKTGASGANFIVLVDGVIKASGTMGTATVDVKTIVWGTPDNNLAGYFSELVVEDANLSTVGVVVETEAPTGAGGDATGTGAYTDVDEAPLNDTDIITFGAAGERNSFTSPARTSTLALVRGVGVAARAKRDASGPQNMKFYLKIGGTRYYSPDIALTTGFDAYQYVWALNPATSAAWTSTDANDAALEWGVEAVA
>NZ_CP005188.1|WP_083535887.1|2381741_2382413_-|DUF2793-domain-containing-protein
MTDFPNTGAPMWAASQASPWDAVNEASFIFDAFASRSIVEDRDLTAPPGSCANGARYLIAAAATGLWVGHDGELAIAIGTDASNGWYFANVARHGNQLLVKDEDLLIEYDGASWNPFWPGAAAALKTVPGTTYDAVRDDAGSYILFTNALPVAFTIPPEASVNWPVWSVLTFEQNGAGAVTVSPGSGVTINSHGSLYTSGGQHAVCQLKKVGTDIWTMTGDLT
>NZ_CP005188.1|WP_062117608.1|2382421_2385661_-|hypothetical-protein
MADPVSLGLTIALSAVQMGLQASRKIEGPRLTDRTVSLGDPGDAKNYFLGTRRFESCSFLFAEDLREVKKKRKTKGGKYNEYRYYGTWANHVADHPTDAITRIWLDKHLIFDATGVGPITVIAKGNWKDFLTFYLGGEDQEPDPRMAQTIDAKLGEGSCPAYRGQSYVMFKEVFLEKFGNRLPQPTIEATKNVSPNYPWETFSYVYGKPTNLTLDPSGTFAAWGGQSYEVYDLPSRTLLGSPTFSVPVAGDWKGITSDGRIYTVIGNDDSVDQFFNGNHHVGTFDAASGSLIGSSDTGGRFQDGCVVLKDGNGVEHVLTYGFTSWPIQYGMPLSGGSLGWYEYDFGWKITQYFVDGHGDIWAVGSAPSISPTTTMYLRRVVDTGVRSSAPSSAAFTVPLGAAYWTHVDGAHYGDHFVLQWNGAVLYLIDDETLTVSSSRSFGYAYATTNWVHHDPSQPTIWLGRDEISLIDLSTVRTIDYSDWKFEDVYFNTSAYIPSLHALFGSPQFSDVFTFRYLDRVGRGGVTVGAVIDMISDLCGVEVGDYDSSLCTDILDGFNFTAGAGKSILSPVLEAFDIDPVSEDFLVRFRPRGGASEGTITTGKLAISGDSRFRIPLVKDEDLPLQVTMTFADIDKDQQVNLAQSARAADAVRTKRITQIDMRNLAIDADAARHLADRFMRRQHAEKESHEFSLTDRFLKVTPGSVYTLQLGNLSRIGRCISARHGADRVTETRWVRDNPSLADRGSAAGAEMESRSPEVIRIPTPSRGFVLDVPLPQDALDSATPFMLIAAGPFSPDGYWVGADVYASDTGVADDYDAGWAAISAQSVASWGVCIDALGDALPWLPDNGNSITVDMRSGTLSSVSMDDLLLYPTLNLVLIGREYVQFANATLIAPNRYVLSGFLRGRRGTEQHLASHAIGDSLLVMDASVLSRVMGASEIGDTDYYKVVSQGREEETGFAVTVPFTAAAQKPYSPVHGALTHNMGTGDWSITATRRTRIGGGKIDGQDVPLGETAESWSCDIMDGAIVVHTITGVSLPLTYSSAQQTTDFGAPQTSLSVNLYQVSPVLSLRGFPLTIAA
>NZ_CP005188.1|WP_062117614.1|2386102_2387173_-|DUF2163-domain-containing-protein
MSRTIPVGYIAHLASSTRSLCWCLRIDAANGVSVGLTTHDRPLSIDLGDGALDYVGGLTMSEVSLSVGLGADNFQASGPLGPLFTAADVLGGRWNRARFRLFQVNHRGLVSGQIRMLGGKLGQPLVDGHTFNLEGLGHTASYNQEIGRVTSPYCAETFGSARCKYPLLPDVWTPGAAVAARGAWDAGAGNFVRPSVFNGYHYSCSAAGTTGGSEPSWPTTLGATVSDGGATWTCVKAATIEAVVASVTSGFRFTIAALPFSTIDDELAYGRVAFTSGVLADDLEIEIFRWAASTRSIELYASMADLPSVGDALVIRRPCLNTRVDCRDSWRNTWNFRGEPDQRGSDQILRAATGGA
>NZ_CP005188.1|WP_062117617.1|2387169_2387796_-|DUF2460-domain-containing-protein
MTDDVRLPEKWSKGSNGGFEFSTDAVLTDDGGVETNENWAVPLRRYEISHNVKTPEDIGLLRSFHAARRGAARPFLFKDWIDFTSKADGNSAAAMTDQPLGIGDGVTTAFQLVKRYADSVSPIDVPVLWPVTGTLLIAKDGVAAPTGWSVNRGTGIVTFTSAPPLGVILTAGFQFDVPVRFEDDLLRISWDTINSRSAGSVPLSEWRA
>NZ_CP005188.1|WP_062117619.1|2387792_2390543_-|hypothetical-protein
MAQTSRAVNLALRIVGIADAERDFKRVGDAGGRAFSDIEKEAISAEKAVIKLANAEKSAALVSDRRRTAHAEARALFPKGSGPAASVLQQRRSYVTDAVAKAQSVIDDAQGAQALENIAAKSAAAEARLLAFARAGGGAAIVITALAVASYKAAKAADEHNEALNAFHRQLELTGNVSAATSEELEHFADQAARTSIATEKAALQAATALARVPGLARETLNQALSVAGDLGDDPQAVVQWAEKMGSVLSALARNDIEALRSALADANPELQITVMRLAEAGKTAEAQQAYIQGLARAASGSGGLDEAAQSVGEAWDRMLARIGDSSGVSDAVIGMFNGIASAIDWTSDRVSAFGTKVANFYRWARGQQQETRSAFATPIDNMLAMGRQAQGMATDAAARALMAKPDTPKKSGGGRGGKSDAQREAERQAREAEQARQAADRIKQSNDQVIDSYKLRADEAQARLGLEGDALDAVVRQQAIDAAARRISTELVDKEVEARRRVAKGHFDEAQARAEATAVVSQQTDAVRKFAAAEYDAERAQKLFIERQRIATQMFDDTRTSLEMIAQEVANVQAAFDGGAISAFTFSRRMKQLAEDYVDLGRMGNKMWEGFGQDVGRTLTDIIRNGGSARDILSQLIDLPLQRLLQKNVEEPIAKLIDGLTGNDIEKNVAKAKSDILPGLPQQLGIQAEPEFLRLTTAAGMAADALTRVAAAGGSPVVDPLADVGSEAARAAEGMNAISDQSAQLGSAFNSLIAMATGGSVSGGGGLLGTVLSLGTSLIGPAIGGGAVTSAGTDAVYGGTLGGIYHDGGRVGPGGKQRVLPFDVSALPRLHSGTLRNDEFLSVLQTDEEVLNRSQASAFRTLLRGNSPAPPRGGGSQTIVNNWNVPATPDRRRTGAEVARRQAEQQDDFRRRGLA
>NZ_CP005188.1|WP_062117622.1|2390547_2390742_-|hypothetical-protein
MHPQYLVDDEVALIVRLARLWRDGVMPEEGGALAQSAWTVAAIMIVLKAWGDLQAARDRKNARD
>NZ_CP005188.1|WP_062117625.1|2390867_2391494_-|hypothetical-protein
MTTVLNDHRHVKTLGGVDYAFRRPDVYDLPAMRRRLRIARVRRPTIGEYRAIGAEGARRIGEAAGDAAEGARQAEIIERWYDLLLPFDEDSIDEPDLEARAKLFAQEQAERRQEMAKLYPDVLAIEANLDRHCQDWAELRADADFWEEISRIDSVRLLLTEIGGRVFPRDADGLMIEEGYQSIPAQHRLQLGTFALSLLTPDEATRKN
>NZ_CP005188.1|WP_062117628.1|2391501_2392665_-|hypothetical-protein
MGDFLIKNRLVLAKEETTSGTDASPTPSANAVLCEEPRVAPNMELERTNEVTGSLDSMQSIVGGGYVEHSQRIFAKGSGTPGTAPEMDPYLKAGALGLTTLAAASTGTAQAGAAAAITLAVGAPSTDLKGFVIVTTGGTGSGQTRVITAYDTTTKVADVYPDWDTEPDATTTYSVKAGNLYVPASTALKTITSYVYQKNSSTGNAILKKLLGGAANIAFAVQTRQTGRFTFTVRGMLSDPEDVANPAAGVFDATRPRPLRDADAFLDGTRVCFRNFTLDWGNVLTQADCPGAIYGYDPARVTDRRPTGRINPQMKTLSERNAWADMVAGTTKPIWLNWGEVDGNRISIFIPAIAYTGNEEEDLDGIAADGLPFEAVGPDSWIYLLFW
>NZ_CP005188.1|WP_145902265.1|2392693_2392924_-|hypothetical-protein
MGDKQGMSFTPRSGDTHVIGDDGAAVNVDAQARDVALADIVDTIKGPDGEAVTLPEVDLTDPPSPLAPASAGRKAK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP005188_2	2.1\|2380601\|27\|NZ_CP005188\|CRISPRCasFinder	2380601-2380627	27	NZ_CP041068	Bacillus megaterium strain KNU-01 plasmid pKNU_01_4, complete sequence	45019-45045	5	0.815
NZ_CP005188_2	2.1\|2380601\|27\|NZ_CP005188\|CRISPRCasFinder	2380601-2380627	27	NZ_CP018878	Bacillus megaterium strain JX285 plasmid 5, complete sequence	3200-3226	5	0.815
NZ_CP005188_2	2.1\|2380601\|27\|NZ_CP005188\|CRISPRCasFinder	2380601-2380627	27	CP041516	Bacillus aryabhattai strain KNU10 plasmid unnamed, complete sequence	9074-9100	5	0.815
NZ_CP005188_2	2.2\|2380655\|27\|NZ_CP005188\|CRISPRCasFinder	2380655-2380681	27	NC_029047	Verrucomicrobia phage P8625, complete genome	22404-22430	7	0.741

1. spacer 2.1|2380601|27|NZ_CP005188|CRISPRCasFinder matches to NZ_CP041068 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_4, complete sequence) position: , mismatch: 5, identity: 0.815

aacttctaacaggtccagatatgggcc	CRISPR spacer
catttgtaacaggtccagatatgagca	Protospacer
 *.** *****************.**

2. spacer 2.1|2380601|27|NZ_CP005188|CRISPRCasFinder matches to NZ_CP018878 (Bacillus megaterium strain JX285 plasmid 5, complete sequence) position: , mismatch: 5, identity: 0.815

aacttctaacaggtccagatatgggcc	CRISPR spacer
catttgtaacaggtccagatatgagca	Protospacer
 *.** *****************.**

3. spacer 2.1|2380601|27|NZ_CP005188|CRISPRCasFinder matches to CP041516 (Bacillus aryabhattai strain KNU10 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

aacttctaacaggtccagatatgggcc	CRISPR spacer
catttgtaacaggtccagatatgagca	Protospacer
 *.** *****************.**

4. spacer 2.2|2380655|27|NZ_CP005188|CRISPRCasFinder matches to NC_029047 (Verrucomicrobia phage P8625, complete genome) position: , mismatch: 7, identity: 0.741

tattgacatgaacccaaaagacggccc	CRISPR spacer
tattgacatgaacccaaaaatagaatt	Protospacer
*******************.  *. ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

300898 : 340587

Burkholderia_phage(24.14%)

terminase,head,plate,integrase,tail,protease,portal,capsid

attL 302715:302752|attR 340620:340657

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062113260.1\|300898_302341_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_037462865.1\|302403_302631_-	zinc-finger domain-containing protein	NA	NA	NA	NA
302715:302752	attL	NA	NA	NA	NA
WP_145902189.1\|302905_303652_-	hypothetical protein	NA	NA	NA	NA
WP_062113268.1\|304634_304958_+	hypothetical protein	NA	NA	NA	NA
WP_062113271.1\|305035_305935_+	hypothetical protein	NA	NA	NA	NA
WP_145902190.1\|305947_306682_-	hypothetical protein	NA	NA	NA	NA
WP_083535791.1\|306747_307797_-\|portal	phage portal protein	E5E3X1	Burkholderia_phage	4.4e-105	57.6
WP_062113280.1\|307793_309647_-	oxidoreductase	A4JWU9	Burkholderia_virus	1.5e-172	52.5
WP_083535945.1\|309811_310615_+\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	8.1e-51	46.4
WP_062113285.1\|310671_311754_+\|capsid	phage major capsid protein, P2 family	A0A2H4JCR7	uncultured_Caudovirales_phage	3.6e-86	49.9
WP_062113288.1\|311793_312603_+\|terminase	terminase	A4PE31	Ralstonia_virus	1.7e-32	42.3
WP_062113291.1\|312723_312984_+	hypothetical protein	NA	NA	NA	NA
WP_062113294.1\|312980_313463_+\|head	head completion/stabilization protein	K4NZV5	Burkholderia_phage	1.5e-23	45.1
WP_062113298.1\|313462_313687_+\|tail	phage tail protein	A0A2H4J946	uncultured_Caudovirales_phage	3.1e-08	44.1
WP_062113301.1\|313690_314023_+	hypothetical protein	NA	NA	NA	NA
WP_062113305.1\|314026_314479_+	hypothetical protein	A0A1B1IWJ5	uncultured_Mediterranean_phage	3.4e-38	54.4
WP_062113308.1\|314475_314871_+	hypothetical protein	NA	NA	NA	NA
WP_062120146.1\|314815_315001_+	hypothetical protein	NA	NA	NA	NA
WP_062113311.1\|315003_315522_+\|tail	phage tail protein	A0A077K8R3	Ralstonia_phage	3.3e-21	43.7
WP_062113314.1\|315518_316190_+	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	8.0e-12	30.0
WP_145902191.1\|316196_316742_-	hypothetical protein	NA	NA	NA	NA
WP_062120149.1\|316968_317862_+\|plate	baseplate assembly protein	V5YTH6	Pseudomonas_phage	2.1e-76	55.9
WP_062113322.1\|317858_318410_+\|tail	phage tail protein I	R4JET8	Burkholderia_phage	1.0e-44	48.6
WP_062113325.1\|318421_320407_+	hypothetical protein	V9IQX0	Stenotrophomonas_phage	9.0e-43	44.6
WP_062113328.1\|320410_320800_+	hypothetical protein	A0A291LAV4	Bordetella_phage	1.0e-14	40.5
WP_062113331.1\|320809_321055_+	hypothetical protein	NA	NA	NA	NA
WP_062113334.1\|321225_322044_+	DNA adenine methylase	A0A291AUP9	Sinorhizobium_phage	1.1e-87	58.7
WP_062113336.1\|322107_322881_-	TIR domain-containing protein	NA	NA	NA	NA
WP_062120152.1\|323051_323588_+\|plate	phage baseplate assembly protein V	A0A2H4JFJ8	uncultured_Caudovirales_phage	1.1e-35	43.4
WP_062113339.1\|323587_323938_+	oxidoreductase	V9IQW0	Stenotrophomonas_phage	2.8e-24	50.9
WP_062113343.1\|323953_325129_+\|tail	phage tail protein	F1BUU3	Erwinia_phage	5.4e-120	58.5
WP_062113346.1\|325167_325680_+\|tail	phage major tail tube protein	E5E3Q2	Burkholderia_phage	1.4e-45	51.5
WP_062113349.1\|325740_326049_+\|tail	phage tail assembly protein	Q9ZXK2	Pseudomonas_virus	3.1e-19	58.3
WP_062113351.1\|326057_326189_+\|tail	GpE family phage tail protein	E5E3Q0	Burkholderia_phage	3.1e-05	56.4
WP_062113355.1\|326188_328666_+\|tail	phage tail tape measure protein	U5P420	Shigella_phage	1.8e-85	43.4
WP_062113357.1\|328678_329092_+\|tail	phage tail protein	E5FFG4	Burkholderia_phage	3.4e-29	52.0
WP_083535792.1\|329088_330099_+	late control protein	R4JDM6	Burkholderia_phage	6.5e-74	45.9
WP_145902192.1\|330203_330842_-	hypothetical protein	NA	NA	NA	NA
WP_083535793.1\|330890_331313_-	hypothetical protein	NA	NA	NA	NA
WP_062113362.1\|331312_331987_-	helix-turn-helix transcriptional regulator	A0A0R6PFB5	Moraxella_phage	1.4e-11	28.0
WP_063619022.1\|332072_332402_+	hypothetical protein	NA	NA	NA	NA
WP_062113363.1\|332401_332644_+	hypothetical protein	NA	NA	NA	NA
WP_062113365.1\|332709_333042_+	hypothetical protein	NA	NA	NA	NA
WP_062113367.1\|333038_333557_+	hypothetical protein	NA	NA	NA	NA
WP_062113370.1\|333553_334042_+	hypothetical protein	NA	NA	NA	NA
WP_062113372.1\|334102_334339_+	hypothetical protein	NA	NA	NA	NA
WP_062113377.1\|334435_337147_+	toprim domain-containing protein	A0A077K8T2	Ralstonia_phage	2.9e-209	43.5
WP_083535946.1\|337203_337554_+	DUF2312 domain-containing protein	Q8W6H2	Sinorhizobium_phage	3.5e-11	49.3
WP_062113381.1\|337550_337754_+	hypothetical protein	NA	NA	NA	NA
WP_145902193.1\|337750_338218_+	hypothetical protein	NA	NA	NA	NA
WP_145902194.1\|338214_338658_+	hypothetical protein	NA	NA	NA	NA
WP_062113390.1\|338654_339344_+	hypothetical protein	A0A1P8VV97	Erythrobacter_phage	2.4e-51	52.3
WP_158511138.1\|339340_339640_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_062113394.1\|339525_340587_+\|integrase	site-specific integrase	A0A076G7B8	Sinorhizobium_phage	2.8e-43	35.1
340620:340657	attR	NA	NA	NA	NA

DBSCAN-SWA_2

409178 : 457401

Enterobacteria_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161626247.1\|409178_410651_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_004211466.1\|410647_411511_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.5e-34	34.4
WP_044661445.1\|413827_415060_-	exonuclease subunit SbcD	NA	NA	NA	NA
WP_083535948.1\|415131_415917_-	DUF2779 domain-containing protein	NA	NA	NA	NA
WP_044661447.1\|416684_417725_-	WYL domain-containing protein	NA	NA	NA	NA
WP_062113516.1\|417859_419344_-	hypothetical protein	A0A1S6UB21	Serratia_phage	4.2e-61	47.7
WP_020819327.1\|419514_419763_+	hypothetical protein	NA	NA	NA	NA
WP_083535799.1\|419876_420224_+	thermonuclease family protein	NA	NA	NA	NA
WP_083535800.1\|420393_420633_+	hypothetical protein	NA	NA	NA	NA
WP_083535801.1\|420637_421372_+	hypothetical protein	NA	NA	NA	NA
WP_043155119.1\|421968_423309_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_158511139.1\|423843_424407_-	hypothetical protein	NA	NA	NA	NA
WP_044661452.1\|424411_424804_-	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_044661453.1\|424832_425450_-	hypothetical protein	NA	NA	NA	NA
WP_044661454.1\|425573_425762_-	hypothetical protein	NA	NA	NA	NA
WP_062113527.1\|426041_426497_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_044661455.1\|426480_426750_-	hypothetical protein	NA	NA	NA	NA
WP_083535803.1\|426881_427394_-	hypothetical protein	NA	NA	NA	NA
WP_044663008.1\|427572_428913_-	dNTP triphosphohydrolase	NA	NA	NA	NA
WP_157009805.1\|429038_429206_-	hypothetical protein	NA	NA	NA	NA
WP_052628189.1\|429287_429857_+	hypothetical protein	NA	NA	NA	NA
WP_052628190.1\|429926_431180_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_044661457.1\|431176_432178_-	hypothetical protein	NA	NA	NA	NA
WP_145902201.1\|432187_432595_-	hypothetical protein	NA	NA	NA	NA
WP_044661459.1\|433252_436411_-	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_044661460.1\|436413_439101_-	hypothetical protein	NA	NA	NA	NA
WP_044661461.1\|439437_439974_+	hypothetical protein	NA	NA	NA	NA
WP_044661462.1\|439970_440330_+	hypothetical protein	NA	NA	NA	NA
WP_044661463.1\|440471_440969_+	hypothetical protein	NA	NA	NA	NA
WP_083535804.1\|440965_441541_+	hypothetical protein	NA	NA	NA	NA
WP_052628192.1\|442067_442499_+	hypothetical protein	NA	NA	NA	NA
WP_044663011.1\|442694_444656_+	hypothetical protein	NA	NA	NA	NA
WP_062113540.1\|444805_445543_+	hypothetical protein	NA	NA	NA	NA
WP_062113542.1\|445668_446502_+	EcsC family protein	NA	NA	NA	NA
WP_044661468.1\|447319_448852_+	cell division protein Fic	NA	NA	NA	NA
WP_044663013.1\|449184_449616_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_044661469.1\|449612_450098_+	RES domain-containing protein	NA	NA	NA	NA
WP_044661470.1\|450467_451550_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_158511140.1\|452725_453061_+	DUF2628 domain-containing protein	NA	NA	NA	NA
WP_062113545.1\|453104_453713_+	DUF559 domain-containing protein	NA	NA	NA	NA
WP_145902195.1\|453643_454401_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	2.0e-14	42.6
WP_062113549.1\|454507_454711_-	hypothetical protein	NA	NA	NA	NA
WP_044661470.1\|454850_455933_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_044661472.1\|456042_457401_+\|transposase	IS1182 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

958398 : 965813

Synechococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037461593.1\|958398_959052_+	fructose-6-phosphate aldolase	M1PR54	Cyanophage	2.8e-49	49.3
WP_062114622.1\|959193_959544_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_062120346.1\|959804_960524_+	queuosine precursor transporter	A0A2H4J2N7	uncultured_Caudovirales_phage	9.8e-16	33.6
WP_062114625.1\|960530_961277_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_062114627.1\|961403_962312_-\|tRNA	methionyl-tRNA formyltransferase	M4QRX9	Synechococcus_phage	5.8e-05	28.4
WP_062114630.1\|962365_962962_+	recombination protein RecR	NA	NA	NA	NA
WP_062114633.1\|962993_963524_+	peptide deformylase	E3SLL2	Synechococcus_phage	9.4e-24	43.5
WP_037461627.1\|963604_964306_-	phosphate regulon transcriptional regulatory protein PhoB	W8CYM9	Bacillus_phage	4.6e-34	36.2
WP_062114636.1\|964308_965004_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_062120349.1\|965024_965813_-	phosphate ABC transporter ATP-binding protein	M1IC18	Acanthocystis_turfacea_Chlorella_virus	2.8e-08	26.0

DBSCAN-SWA_4

2311539 : 2353409

uncultured_Mediterranean_phage(10.53%)

head,tail,tRNA,protease,portal,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062117387.1\|2311539_2312817_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.3e-95	46.3
WP_062117392.1\|2312912_2313677_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.1e-36	37.8
WP_062117396.1\|2313696_2314740_+	potassium channel family protein	NA	NA	NA	NA
WP_062120781.1\|2314809_2316177_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_062117400.1\|2316221_2317070_-	DUF3298 and DUF4163 domain-containing protein	NA	NA	NA	NA
WP_062120785.1\|2317069_2317270_-	hypothetical protein	NA	NA	NA	NA
WP_062117402.1\|2317409_2318813_+	leucyl aminopeptidase family protein	Q6GYZ8	Mycoplasma_phage	4.4e-28	29.1
WP_062117404.1\|2318868_2319276_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_062117407.1\|2319235_2320144_+	C40 family peptidase	A0A1J0GW44	Streptomyces_phage	1.3e-09	42.5
WP_062117409.1\|2320140_2321085_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_062120788.1\|2321118_2321322_-	hypothetical protein	NA	NA	NA	NA
WP_062117412.1\|2321462_2321717_+	hypothetical protein	NA	NA	NA	NA
WP_062117414.1\|2321759_2323088_+	sorbosone dehydrogenase family protein	NA	NA	NA	NA
WP_062117415.1\|2323088_2323907_-	ATP-binding protein	NA	NA	NA	NA
WP_062117417.1\|2324017_2324977_+	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	9.3e-38	38.7
WP_062117419.1\|2324983_2325214_-	hypothetical protein	NA	NA	NA	NA
WP_062117421.1\|2325359_2325893_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_062117424.1\|2325935_2327642_-	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	2.5e-25	24.1
WP_062117438.1\|2327768_2328452_-	DUF1013 domain-containing protein	NA	NA	NA	NA
WP_062117441.1\|2328566_2329595_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_062117444.1\|2329594_2330455_-	UDP-2,3-diacylglucosamine diphosphatase	A0A218MKA7	uncultured_virus	1.2e-65	49.0
WP_062117447.1\|2330555_2331560_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA
WP_062117449.1\|2331661_2331859_+	DUF1192 domain-containing protein	NA	NA	NA	NA
WP_062117452.1\|2332015_2334334_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	7.2e-177	43.7
WP_062117454.1\|2334685_2335315_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_062117458.1\|2335375_2336110_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_062120791.1\|2336228_2336774_+	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA
WP_062117461.1\|2336796_2337348_-	superoxide dismutase family protein	B6S2G0	Adoxophyes_orana_nucleopolyhedrovirus	3.4e-08	35.7
WP_062117464.1\|2337680_2338769_-	OmpA family protein	NA	NA	NA	NA
WP_062117467.1\|2338946_2339450_-	DUF2793 domain-containing protein	A0A1V0DY81	Dinoroseobacter_phage	1.8e-16	39.1
WP_062117470.1\|2339480_2341676_-	hypothetical protein	M4QNR6	Tetraselmis_viridis_virus	7.3e-54	29.4
WP_145902264.1\|2341663_2342074_-	peptidoglycan endopeptidase	NA	NA	NA	NA
WP_062117476.1\|2342082_2342898_-	DUF2163 domain-containing protein	Q5DN21	Alphaproteobacteria_virus	1.3e-11	41.4
WP_062117479.1\|2342894_2345225_-	DUF2460 domain-containing protein	A0A2H4P7I1	Pseudomonas_phage	7.6e-33	30.5
WP_062117482.1\|2345221_2345773_-	hypothetical protein	D6PEW0	uncultured_phage	8.9e-09	37.4
WP_037467282.1\|2345809_2346004_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_062117484.1\|2346000_2346312_-	gene transfer agent family protein	NA	NA	NA	NA
WP_062117488.1\|2346308_2346716_-\|tail	phage tail protein	NA	NA	NA	NA
WP_062117490.1\|2346771_2347089_+	hypothetical protein	NA	NA	NA	NA
WP_062117492.1\|2347217_2347616_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_083535884.1\|2347612_2347837_-	hypothetical protein	NA	NA	NA	NA
WP_083535885.1\|2347803_2348340_-	hypothetical protein	NA	NA	NA	NA
WP_062117499.1\|2348436_2349552_-\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	5.0e-75	41.8
WP_145902331.1\|2349687_2350074_-\|head,protease	HK97 family phage prohead protease	A0A2H4JAI0	uncultured_Caudovirales_phage	1.2e-12	36.0
WP_062117503.1\|2350097_2350418_-	hypothetical protein	K4I011	Acidithiobacillus_phage	1.2e-08	46.1
WP_062117507.1\|2350439_2351567_-\|portal	phage portal protein	W8ECU7	Geobacillus_phage	2.5e-50	35.4
WP_062117509.1\|2351676_2352015_-	hypothetical protein	NA	NA	NA	NA
WP_062117512.1\|2352074_2353409_-	DNA-packaging protein	A0A1V0DY66	Dinoroseobacter_phage	1.1e-73	40.4

DBSCAN-SWA_5

2489771 : 2495281

uncultured_Mediterranean_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062120829.1\|2489771_2490767_-	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	8.5e-50	40.3
WP_083535892.1\|2490811_2491864_+	cell wall hydrolase	A0A0S1WEP8	Vibrio_phage	2.2e-08	30.2
WP_062117899.1\|2492205_2492334_+	entericidin A/B family lipoprotein	NA	NA	NA	NA
WP_062117901.1\|2492392_2493178_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	6.9e-47	42.2
WP_062117904.1\|2493174_2493606_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_062117907.1\|2493637_2493880_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	6.9e-06	66.7
WP_062117909.1\|2493908_2494502_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	6.8e-39	43.9
WP_062117912.1\|2494498_2495281_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	7.4e-33	33.8

DBSCAN-SWA_6

2537563 : 2577218

Yellowstone_lake_phycodnavirus(14.29%)

integrase

attL 2567070:2567086|attR 2579249:2579265

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062118011.1\|2537563_2538601_+\|integrase	site-specific integrase	D6PF86	uncultured_phage	2.3e-26	28.1
WP_145902338.1\|2538699_2538981_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_062118016.1\|2539000_2539282_-	Killer protein	A0A222YWE2	Escherichia_phage	1.2e-06	38.0
WP_062118019.1\|2539554_2539926_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_062118022.1\|2540089_2541208_-	Fic family protein	D7RWK9	Brochothrix_phage	1.2e-07	24.6
WP_062118025.1\|2542683_2542911_+	transcriptional regulator	NA	NA	NA	NA
WP_062118028.1\|2542914_2543295_+	type II toxin-antitoxin system death-on-curing family toxin	A0A1B3AYM0	Gordonia_phage	8.0e-09	46.5
WP_062118031.1\|2543664_2544063_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_062118033.1\|2544062_2544746_+	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_083535896.1\|2544796_2545666_-	hypothetical protein	NA	NA	NA	NA
WP_062118038.1\|2545717_2547268_+	hypothetical protein	NA	NA	NA	NA
WP_062118040.1\|2547362_2548130_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_062118043.1\|2548123_2549203_+	CDP-glucose 4,6-dehydratase	A0A0P0YM09	Yellowstone_lake_phycodnavirus	1.8e-05	23.5
WP_062118046.1\|2549193_2550567_+	lipopolysaccharide biosynthesis protein RfbH	A0A0P0YLZ6	Yellowstone_lake_phycodnavirus	1.3e-48	34.2
WP_145902269.1\|2550611_2551724_+	N-acetylneuraminic acid synthase	NA	NA	NA	NA
WP_062120858.1\|2551791_2553630_+	thiamine pyrophosphate-binding protein	E5EQ70	Micromonas_sp._RCC1109_virus	6.9e-90	34.9
WP_062118051.1\|2553626_2554313_+	HAD hydrolase-like protein	NA	NA	NA	NA
WP_158511178.1\|2554327_2555299_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_062118055.1\|2555291_2556239_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_062118058.1\|2556242_2556683_+	GtrA family protein	NA	NA	NA	NA
WP_062118062.1\|2556672_2557743_+	FkbM family methyltransferase	H8ZJI6	Ostreococcus_tauri_virus	3.1e-05	32.6
WP_158511179.1\|2557777_2558671_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_062120861.1\|2559060_2561025_-	relaxase/mobilization nuclease and DUF3363 domain-containing protein	NA	NA	NA	NA
WP_062118068.1\|2561276_2561648_-	hypothetical protein	NA	NA	NA	NA
WP_145902339.1\|2561870_2562446_-	transglycosylase SLT domain-containing protein	A0A0H3V0Q1	Geobacillus_virus	1.2e-11	48.6
WP_062118074.1\|2562466_2563048_-	S26 family signal peptidase	NA	NA	NA	NA
WP_062118077.1\|2563044_2563275_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_062118080.1\|2563429_2563729_-	DUF736 domain-containing protein	NA	NA	NA	NA
WP_062118083.1\|2564482_2566246_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_062118086.1\|2566339_2566768_-	DUF2958 domain-containing protein	NA	NA	NA	NA
WP_062118088.1\|2566764_2567028_-	hypothetical protein	A0A1V0EEV1	Caulobacter_phage	5.0e-10	55.9
2567070:2567086	attL	NA	NA	NA	NA
WP_062118092.1\|2567139_2567364_+	hypothetical protein	NA	NA	NA	NA
WP_020818728.1\|2567354_2568218_-	DUF1738 domain-containing protein	A0A1B1IWW8	uncultured_Mediterranean_phage	2.3e-35	35.0
WP_020818727.1\|2568387_2570550_-\|integrase	integrase	NA	NA	NA	NA
WP_020818726.1\|2570546_2572334_-	hypothetical protein	NA	NA	NA	NA
WP_020818725.1\|2572330_2573680_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_020818724.1\|2574073_2575066_-\|integrase	site-specific integrase	A0A142F1N9	Bacillus_phage	2.3e-23	28.3
WP_020818723.1\|2575062_2576004_-\|integrase	tyrosine-type recombinase/integrase	U3PCM7	Lactobacillus_phage	1.4e-06	30.6
WP_020818722.1\|2576000_2577218_-\|integrase	tyrosine-type recombinase/integrase	W8EHC2	Mycobacterium_phage	4.7e-10	27.4
2579249:2579265	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2616818 : 2623063

Stx2-converting_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083535902.1\|2616818_2618414_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.2e-100	39.7
WP_051093233.1\|2618481_2618781_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.3e-22	57.0
WP_083535903.1\|2618834_2619227_-\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	7.0e-08	43.8
WP_062118189.1\|2619861_2621028_-	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A0E3G3R2	Synechococcus_phage	1.5e-45	31.2
WP_062118192.1\|2621024_2621954_-	NAD-dependent epimerase/dehydratase family protein	A0A1D8KU05	Synechococcus_phage	6.5e-52	37.8
WP_062120887.1\|2622004_2623063_-	GDP-mannose 4,6-dehydratase	M1HKY0	Acanthocystis_turfacea_Chlorella_virus	1.1e-124	62.7

DBSCAN-SWA_8

2987062 : 3006391

Rhodobacter_phage(16.67%)

head,terminase,tail,protease,portal,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_063619043.1\|2987062_2987623_-	hypothetical protein	D6QWP0	uncultured_phage	2.1e-29	45.0
WP_158511188.1\|2987622_2987934_-	hypothetical protein	I3UM16	Rhodobacter_phage	7.5e-13	52.3
WP_062119157.1\|2988003_2988258_-	hypothetical protein	NA	NA	NA	NA
WP_062119160.1\|2988254_2989226_-	hypothetical protein	NA	NA	NA	NA
WP_062119163.1\|2989222_2989879_-	DUF2793 domain-containing protein	A0A172PZV5	Pseudomonas_phage	2.7e-12	36.4
WP_062119166.1\|2989889_2993147_-	hypothetical protein	Q5DN19	Alphaproteobacteria_virus	7.3e-66	24.7
WP_062119170.1\|2993136_2993562_-	hypothetical protein	F4YXU4	Roseobacter_phage	5.6e-11	40.9
WP_062119172.1\|2993554_2994421_-	DUF2163 domain-containing protein	NA	NA	NA	NA
WP_062119177.1\|2994417_2995017_-	hypothetical protein	Q5DN22	Alphaproteobacteria_virus	3.3e-17	31.4
WP_062119179.1\|2995016_2997152_-	hypothetical protein	A0A0K1Y6G1	Rhodobacter_phage	3.7e-34	40.5
WP_158511189.1\|2997179_2997329_-	hypothetical protein	NA	NA	NA	NA
WP_062119182.1\|2997463_2997850_-	hypothetical protein	NA	NA	NA	NA
WP_062119185.1\|2997849_2998299_-	hypothetical protein	NA	NA	NA	NA
WP_062119188.1\|2998300_2998699_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_062119192.1\|2998702_2999113_-	hypothetical protein	NA	NA	NA	NA
WP_145902345.1\|2999112_2999409_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_062119199.1\|2999456_3000011_-	hypothetical protein	NA	NA	NA	NA
WP_062119202.1\|3000015_3000717_-	hypothetical protein	M1I6Y3	Paramecium_bursaria_Chlorella_virus	7.3e-24	33.9
WP_062119205.1\|3000791_3002009_-\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	2.2e-108	50.2
WP_063619044.1\|3002032_3002701_-\|head,protease	HK97 family phage prohead protease	Q6JIM8	Burkholderia_virus	7.5e-26	40.4
WP_063619071.1\|3002697_3003927_-\|portal	phage portal protein	B0VK31	Azospirillum_phage	1.4e-70	41.5
WP_062119221.1\|3004002_3005742_-\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	1.2e-75	33.9
WP_062119224.1\|3005743_3006391_-\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA

DBSCAN-SWA_9

3214363 : 3275754

Trichoplusia_ni_ascovirus(25.0%)

integrase,transposase

attL 3271785:3271805|attR 3283962:3283982

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062119711.1\|3214363_3215593_+\|integrase	tyrosine-type recombinase/integrase	B7SYF8	Stenotrophomonas_phage	2.5e-96	45.5
WP_062119714.1\|3215654_3215888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_062119717.1\|3215884_3216115_-	DUF2274 domain-containing protein	NA	NA	NA	NA
WP_062119721.1\|3216116_3217304_-	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_062119724.1\|3217300_3218137_-	P-type conjugative transfer protein TrbG	NA	NA	NA	NA
WP_062119727.1\|3218133_3218955_-	conjugal transfer protein TrbF	NA	NA	NA	NA
WP_062119730.1\|3218958_3220284_-	P-type conjugative transfer protein TrbL	NA	NA	NA	NA
WP_062119733.1\|3220449_3221205_-	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA
WP_062119735.1\|3221204_3223661_-	conjugal transfer protein TrbE	NA	NA	NA	NA
WP_062119738.1\|3223654_3223927_-	conjugal transfer protein	NA	NA	NA	NA
WP_062119740.1\|3223923_3224265_-	TrbC/VIRB2 family protein	NA	NA	NA	NA
WP_083535929.1\|3224267_3225254_-	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA
WP_062119745.1\|3225250_3225652_-	hypothetical protein	NA	NA	NA	NA
WP_062119748.1\|3225654_3227697_-	conjugal transfer protein TraG	NA	NA	NA	NA
WP_062120877.1\|3228865_3229435_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_083535902.1\|3229455_3231051_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.2e-100	39.7
WP_051093233.1\|3231118_3231418_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.3e-22	57.0
WP_024018734.1\|3231471_3231834_-\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	5.0e-08	43.8
WP_158511197.1\|3233118_3235377_-	TonB-dependent receptor	NA	NA	NA	NA
WP_062119757.1\|3235686_3236457_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_158511198.1\|3236491_3236881_-	EthD domain-containing protein	NA	NA	NA	NA
WP_062119763.1\|3236950_3237721_-	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	1.0e-18	31.1
WP_062119767.1\|3237756_3238926_-	amidohydrolase	NA	NA	NA	NA
WP_083535931.1\|3239118_3239568_+	EthD domain-containing protein	NA	NA	NA	NA
WP_062119774.1\|3239686_3240463_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_062119777.1\|3240476_3241466_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_062119780.1\|3241640_3242891_+	hypothetical protein	NA	NA	NA	NA
WP_158511199.1\|3243019_3243997_+	flavin reductase family protein	Q9KX93	Enterobacteria_phage	2.9e-10	45.1
WP_145902298.1\|3244157_3245888_+	FAD-monooxygenase	NA	NA	NA	NA
WP_062119786.1\|3245884_3246328_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_062119788.1\|3246331_3248362_+	acetoacetate--CoA ligase	NA	NA	NA	NA
WP_062119792.1\|3248411_3249239_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_062119795.1\|3249331_3250183_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_062119798.1\|3250283_3251327_+	NAD(P)-dependent alcohol dehydrogenase	NA	NA	NA	NA
WP_062119801.1\|3251411_3251810_+	SnoaL-like domain-containing protein	NA	NA	NA	NA
WP_062119804.1\|3251806_3252550_+	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	1.0e-15	32.9
WP_158511200.1\|3252640_3252814_+	hypothetical protein	NA	NA	NA	NA
WP_145902299.1\|3252785_3253370_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_062119814.1\|3253521_3254262_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.2e-13	26.7
WP_062119816.1\|3254269_3255421_-	CoA transferase	NA	NA	NA	NA
WP_062119825.1\|3255562_3256720_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_145902346.1\|3256716_3258843_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
WP_062119831.1\|3258856_3260062_-	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_083535979.1\|3260139_3262548_+	transketolase	NA	NA	NA	NA
WP_062121094.1\|3262550_3263834_+	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	NA	NA	NA	NA
WP_062119833.1\|3263982_3264663_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_062119837.1\|3264924_3265665_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_062119840.1\|3265766_3266984_+	amidohydrolase family protein	NA	NA	NA	NA
WP_145902347.1\|3267175_3267715_+	biphenyl 2,3-dioxygenase	NA	NA	NA	NA
WP_083535936.1\|3267877_3268618_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_062119845.1\|3268685_3269291_+	autoinducer synthase	NA	NA	NA	NA
WP_062119848.1\|3269287_3270151_+	phytanoyl-CoA dioxygenase	NA	NA	NA	NA
WP_062119851.1\|3270152_3270338_+	hypothetical protein	NA	NA	NA	NA
WP_158511201.1\|3270399_3270885_+	DUF2285 domain-containing protein	NA	NA	NA	NA
WP_062119854.1\|3270924_3271158_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
3271785:3271805	attL	NA	NA	NA	NA
WP_083535938.1\|3271853_3272567_+	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	1.8e-30	32.8
WP_020818724.1\|3272609_3273602_-\|integrase	site-specific integrase	A0A142F1N9	Bacillus_phage	2.3e-23	28.3
WP_020818723.1\|3273598_3274540_-\|integrase	tyrosine-type recombinase/integrase	U3PCM7	Lactobacillus_phage	1.4e-06	30.6
WP_020818722.1\|3274536_3275754_-\|integrase	tyrosine-type recombinase/integrase	W8EHC2	Mycobacterium_phage	4.7e-10	27.4
3283962:3283982	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage