CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014344	Campylobacter jejuni strain RM3194 chromosome, complete genome	2 crisprs	DEDDh,cas2,cas1,cas9,csa3	0	3	1	0
NZ_CP014345	Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0

1. NZ_CP014344

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014344_1

• CRISPR_ID: NZ_CP014344_1
• CRISPR_location: 1340068-1340147
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP014344_1

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

spacers of NZ_CP014344_1

>1.1|1340091|34|NZ_CP014344|CRISPRCasFinder
TTTTTTAGCTTTATACTCAGCCTTACTCATATAA

CRISPR arrays and Neighbor proteins around NZ_CP014344_1

CRISPR arrays

The CRISPR arrays of NZ_CP014344_1

>merge|NZ_CP014344|1|1340068-1340147|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTACTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NZ_CP014344|1|1|1340068-1340147|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTACTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014344.1|WP_032586852.1|1339093_1339639_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl|CDD|223985
NZ_CP014344.1|WP_057038148.1|1330356_1331697_+|MmgE/PrpD-family-protein	unknown	unknown	gnl|CDD|377179
NZ_CP014344.1|WP_002859678.1|1336162_1336834_-|triose-phosphate-isomerase	unknown	unknown	gnl|CDD|234589
NZ_CP014344.1|WP_002780436.1|1344597_1345719_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP014344.1|WP_061099847.1|1346972_1349042_-|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl|CDD|226093
NZ_CP014344.1|WP_010891933.1|1340448_1341837_-|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl|CDD|100091
NZ_CP014344.1|WP_002780441.1|1342475_1342823_+|holo-ACP-synthase	unknown	unknown	gnl|CDD|223807
NZ_CP014344.1|WP_002780442.1|1341939_1342476_+|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl|CDD|181433
NZ_CP014344.1|WP_002860379.1|1349038_1349551_-|adenylyl-sulfate-kinase	unknown	unknown	gnl|CDD|235498
NZ_CP014344.1|WP_002780440.1|1342823_1343243_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP014344.1|WP_002923484.1|1335334_1336159_-|enoyl-ACP-reductase-FabI	unknown	unknown	gnl|CDD|181416
NZ_CP014344.1|WP_002780434.1|1345791_1346976_-|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl|CDD|226092
NZ_CP014344.1|WP_002858238.1|1339666_1339993_+|ribosome-silencing-factor	unknown	unknown	gnl|CDD|223870
NZ_CP014344.1|WP_032586847.1|1333837_1335331_-|hydrogenase-small-subunit	unknown	unknown	gnl|CDD|224654
NZ_CP014344.1|WP_002783833.1|1336830_1338033_-|phosphoglycerate-kinase	unknown	unknown	gnl|CDD|234613
NZ_CP014344.1|WP_032586844.1|1331999_1333841_+|ferrous-iron-transport-protein-B	unknown	unknown	gnl|CDD|223447
NZ_CP014344.1|WP_002868484.1|1338035_1339034_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|223135
NZ_CP014344.1|WP_002780438.1|1343239_1344601_-|cytochrome-P450	unknown	unknown	gnl|CDD|225035
NZ_CP014344.1|WP_002779147.1|1331778_1332003_+|ferrous-iron-transport-protein-A	unknown	unknown	gnl|CDD|224830
NZ_CP014344.1|WP_002923509.1|1349540_1350302_-|NTP-transferase-domain-containing-protein	unknown	unknown	gnl|CDD|224134

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP014344.1|WP_032586852.1|1339093_1339639_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl|CDD|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	3.73912e-58
NZ_CP014344.1|WP_057038148.1|1330356_1331697_+|MmgE/PrpD-family-protein	gnl|CDD|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	4.97162e-119
NZ_CP014344.1|WP_002859678.1|1336162_1336834_-|triose-phosphate-isomerase	gnl|CDD|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	4.87196e-87
NZ_CP014344.1|WP_061099847.1|1346972_1349042_-|capsular-polysaccharide-biosynthesis-protein	gnl|CDD|226093	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP014344.1|WP_010891933.1|1340448_1341837_-|phosphoglucosamine-mutase-PgmL	gnl|CDD|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP014344.1|WP_002780441.1|1342475_1342823_+|holo-ACP-synthase	gnl|CDD|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	3.95652e-40
NZ_CP014344.1|WP_002780442.1|1341939_1342476_+|flagellar-basal-body-associated-protein-FliL	gnl|CDD|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	1.30474e-91
NZ_CP014344.1|WP_002860379.1|1349038_1349551_-|adenylyl-sulfate-kinase	gnl|CDD|235498	PRK05541, PRK05541, adenylylsulfate kinase; Provisional.	1.27859e-100
NZ_CP014344.1|WP_002923484.1|1335334_1336159_-|enoyl-ACP-reductase-FabI	gnl|CDD|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NZ_CP014344.1|WP_002780434.1|1345791_1346976_-|capsule-polysaccharide-modification-protein-KpsS	gnl|CDD|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP014344.1|WP_002858238.1|1339666_1339993_+|ribosome-silencing-factor	gnl|CDD|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	1.85906e-37
NZ_CP014344.1|WP_032586847.1|1333837_1335331_-|hydrogenase-small-subunit	gnl|CDD|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	3.41267e-157
NZ_CP014344.1|WP_002783833.1|1336830_1338033_-|phosphoglycerate-kinase	gnl|CDD|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP014344.1|WP_032586844.1|1331999_1333841_+|ferrous-iron-transport-protein-B	gnl|CDD|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NZ_CP014344.1|WP_002868484.1|1338035_1339034_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl|CDD|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	2.75115e-168
NZ_CP014344.1|WP_002780438.1|1343239_1344601_-|cytochrome-P450	gnl|CDD|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.85034e-79
NZ_CP014344.1|WP_002779147.1|1331778_1332003_+|ferrous-iron-transport-protein-A	gnl|CDD|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.69416e-22
NZ_CP014344.1|WP_002923509.1|1349540_1350302_-|NTP-transferase-domain-containing-protein	gnl|CDD|224134	COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane].	1.02897e-74

Protein sequences

>NZ_CP014344.1|WP_002858238.1|1339666_1339993_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAENIKTIDMSEQEYFVKYVIIAATLGERHALSLIDELKTRLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGRV
>NZ_CP014344.1|WP_032586852.1|1339093_1339639_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVVLEALGKLDIDKLIIMPTYINPFKQSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNTNEVCEEIKDEVKKYYEKLQKN
>NZ_CP014344.1|WP_002868484.1|1338035_1339034_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLTMAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAATTNLKGILMVDDDERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NZ_CP014344.1|WP_002783833.1|1336830_1338033_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NZ_CP014344.1|WP_002859678.1|1336162_1336834_-|triose-phosphate-isomerase
MIFAANLKCNHTRASFKIYAEILNKTMGAKCDDIIVFPPSVAFLENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGVSAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFIKLIKG
>NZ_CP014344.1|WP_002923484.1|1335334_1336159_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRSLLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NZ_CP014344.1|WP_032586847.1|1333837_1335331_-|hydrogenase-small-subunit
MAKLSNEELKNILENRIKKLENSTLKEDKVINEESVKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHETLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGASLVENYKKSFEKNYAFIEQNFDENPMPSKDFWKYLEMSFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAEKPKLDVSKSFRTTLIYLCGGLDFEGIAYSILKAFEDNITKISSLKAS
>NZ_CP014344.1|WP_032586844.1|1331999_1333841_+|ferrous-iron-transport-protein-B
MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSAELLSLNKKMLLALNMCDEAKKEGIELDTSILNQEFQSQVVEISAKTKENLELLLQKIIILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIHKFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNTLGEFVKNNISNTFIASALADGIIAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGFGCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGIYILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAGTFILLASLLIWFASNFPKNEENLNDFNAQERAIEQSYLGQFGKGIEPIFKPLELDWKLSVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIYNPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN
>NZ_CP014344.1|WP_002779147.1|1331778_1332003_+|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDTSCVILRSDEAKTIEVNLI
>NZ_CP014344.1|WP_057038148.1|1330356_1331697_+|MmgE/PrpD-family-protein
MLYSEILADFIFNLQYENIPDAVVQRAKELMLDSLGTAIAASKEECVLNAFKAFENLSTEKNTPVWVNDKKLDPIYAAMLNGIASHALDFDDTHTEAILHASAILTPLCLSYGFHISKDAKKIIKAFIVGWEVAARVGIASKGTFHKRGFHTTAIAGIFGSVSASAILLDLNKEQIINALGLAGSFASGINEFLSNGSNSKVLHIANAIKNGIIVAHFAKNHMSGPLSIFEGRNNIFKCFGIEEECDKTELGKALGEIWQTMQVSIKPYPSCHFAHGLIDCAIALKNDGLKADEIKSIHCFLDEVPISFICDPLEAKYTPNSAYEAKFSMPFLMALGFFDGKITLESYENLKREEVLEFAKKISYEKRKSQGFPKYFPGHLEASLQDGRTIQKDVFINKGNFDNPLSFEELKAKFLANAQIYLDNAKANKILDQIINLENLNHFSF
>NZ_CP014344.1|WP_010891933.1|1340448_1341837_-|phosphoglucosamine-mutase-PgmL
MNLKEKMLDVIFREYDIRGLYDKELNEKSVKAIGFCLGQTMLNRGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILNLYVKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKDIPNPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVFTLFNDIKARFKN
>NZ_CP014344.1|WP_002780442.1|1341939_1342476_+|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAKADKPKVSAPAQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NZ_CP014344.1|WP_002780441.1|1342475_1342823_+|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSISHDNGFAIAIVAVV
>NZ_CP014344.1|WP_002780440.1|1342823_1343243_-|hypothetical-protein
MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGIFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK
>NZ_CP014344.1|WP_002780438.1|1343239_1344601_-|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMSSKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDCKRAKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGVIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSKRKL
>NZ_CP014344.1|WP_002780436.1|1344597_1345719_-|hypothetical-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHVFNIKVDLSKIEKNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYELVLVAHSVGTIVCIEVLECILRQNLDLSLLRKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NZ_CP014344.1|WP_002780434.1|1345791_1346976_-|capsule-polysaccharide-modification-protein-KpsS
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK
>NZ_CP014344.1|WP_061099847.1|1346972_1349042_-|capsular-polysaccharide-biosynthesis-protein
MKYYSASKKLIANARNFYTISLYKKNLKIKKDDLFFGWGRKKSGLKAMNLAKKYKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATMSSKLENLLNTYEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDDYFQKDEKRILIITQTANDASLEFGLAKDFKTVDMIKDAIKENPDSKIYIKIHPDVLSGKKQSDLDIKSLPKECILITENFNPIALLKFFDKVYTKTSGMGFEALMQGCECVCYSMPFYAGWGLTKDKLECKRRMQKRSLEEVFYVAYILYAEYFNPYLNQKSNIFDTIQTLAKYKDIEKVNSNRLFMLGFTLWKRHFIKPFFNAKDNEIIFLNSLKSLAGYKLKENDKFFIWGKRIDYNALKTTLIKKAQDEDLLHFTPKISLVEDGFIRSISLGSDLTRPFSLIIDDKGLYIDPNKASKLEELLQNEIFDENMLNRAKNIIKILLENRFSKYNGLKHENLKINAKIGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRSKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRTRKLSLEELVAGALIAYPRYINPKTKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRFYEFLAKK
>NZ_CP014344.1|WP_002860379.1|1349038_1349551_-|adenylyl-sulfate-kinase
MINSPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDELREILGHYAYDKQGRIDMALKRAKFAKFLNDQGMIVIVTTISMFNEIYDYNRKQLKNYYEIYIECDMHELMQRDQKRLYTKALNKEIDNVVGVDIEFDKPEADLVIDNSCRNNLEEKVELIIKKLAL
>NZ_CP014344.1|WP_002923509.1|1349540_1350302_-|NTP-transferase-domain-containing-protein
MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSAGINEIAVVGGYLNDVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFMLKCIEEKQDLIISYADIVYFQDCVQKLINAKEELAIVVDKSWRKLWSKRFANPLEDAETLKMINGYIIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSFLQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIDK

Crispr_ID: NZ_CP014344_2

• CRISPR_ID: NZ_CP014344_2
• CRISPR_location: 1466396-1466563
• CRISPR_type: TypeII
• Repeat_type: NA
• Spacer_info: 2 spacers
• Cas_protein_info: cas2,cas1,cas9

Consensus repeat of NZ_CP014344_2

Consensus_repeat	Method
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder

spacers of NZ_CP014344_2

>2.1|1466432|30|NZ_CP014344|CRISPRCasFinder
CCATCAAGTCGTGCAATTTTAATACACTGG
>2.2|1466498|30|NZ_CP014344|CRISPRCasFinder
TTAGCAACTTATAATAACTCTAATGTTATT

CRISPR arrays and Neighbor proteins around NZ_CP014344_2

CRISPR arrays

The CRISPR arrays of NZ_CP014344_2

>merge|NZ_CP014344|2|1466396-1466563|CRISPRCasFinder
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCCATCAAGTCGTGCAATTTTAATACACTGGGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTAGCAACTTATAATAACTCTAATGTTATTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP014344|2|2|1466396-1466563|CRISPRCasFinder
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CCATCAAGTCGTGCAATTTTAATACACTGG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTAGCAACTTATAATAACTCTAATGTTATT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014344.1|WP_052782196.1|1465089_1466280_+|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl|CDD|223380
NZ_CP014344.1|WP_052823203.1|1475222_1475828_+|dephospho-CoA-kinase	unknown	unknown	gnl|CDD|234620
NZ_CP014344.1|WP_061099863.1|1475824_1476574_+|diaminopimelate-epimerase	unknown	unknown	gnl|CDD|234768
NZ_CP014344.1|WP_079757851.1|1457205_1460010_-|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl|CDD|239153
NZ_CP014344.1|WP_002779488.1|1464008_1464230_+|MoaD/ThiS-family-protein	unknown	unknown	gnl|CDD|224888
NZ_CP014344.1|WP_002867223.1|1464230_1464674_+|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl|CDD|223391
NZ_CP014344.1|WP_002860682.1|1478955_1480176_-|glucose-6-phosphate-isomerase	unknown	unknown	gnl|CDD|235168
NZ_CP014344.1|WP_002867225.1|1461193_1462342_-|carboxynorspermidine-decarboxylase	unknown	unknown	gnl|CDD|273414
NZ_CP014344.1|WP_002851546.1|1478378_1478828_-|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl|CDD|223854
NZ_CP014344.1|WP_002869804.1|1464670_1465087_+|GyrI-like-domain-containing-protein	unknown	unknown	gnl|CDD|214874
NZ_CP014344.1|WP_002860687.1|1474172_1475162_-|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl|CDD|235439
NZ_CP014344.1|WP_052949008.1|1467129_1468020_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|187851
NZ_CP014344.1|WP_002851264.1|1456567_1457209_-|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl|CDD|319893
NZ_CP014344.1|WP_002855377.1|1476548_1477280_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	unknown	unknown	gnl|CDD|225539
NZ_CP014344.1|WP_002851502.1|1460175_1460889_-|hypothetical-protein	unknown	unknown	gnl|CDD|225916
NZ_CP014344.1|WP_061099861.1|1462465_1464007_+|multicopper-oxidase-CueO	unknown	unknown	gnl|CDD|225043
NZ_CP014344.1|WP_002803269.1|1460009_1460201_-|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl|CDD|236534
NZ_CP014344.1|WP_038814334.1|1468006_1470970_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226044
NZ_CP014344.1|WP_002860683.1|1477276_1478314_-|ATP-binding-protein	unknown	unknown	gnl|CDD|224292
NZ_CP014344.1|WP_002780988.1|1466705_1467137_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226043

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP014344.1|WP_002780988.1|1466705_1467137_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	5e-59	192.3	1.5
NZ_CP014344.1|WP_052949008.1|1467129_1468020_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	9.6e-99	324.7	9.9
NZ_CP014344.1|WP_038814334.1|1468006_1470970_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	0	1174.8	70.5

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP014344.1|WP_052782196.1|1465089_1466280_+|molybdopterin-molybdotransferase-MoeA	gnl|CDD|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	2.50059e-143
NZ_CP014344.1|WP_052823203.1|1475222_1475828_+|dephospho-CoA-kinase	gnl|CDD|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	1.90669e-69
NZ_CP014344.1|WP_061099863.1|1475824_1476574_+|diaminopimelate-epimerase	gnl|CDD|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	1.38307e-92
NZ_CP014344.1|WP_079757851.1|1457205_1460010_-|formate-dehydrogenase-subunit-alpha	gnl|CDD|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP014344.1|WP_002779488.1|1464008_1464230_+|MoaD/ThiS-family-protein	gnl|CDD|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
NZ_CP014344.1|WP_002867223.1|1464230_1464674_+|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl|CDD|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	2.25273e-43
NZ_CP014344.1|WP_002860682.1|1478955_1480176_-|glucose-6-phosphate-isomerase	gnl|CDD|235168	PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP014344.1|WP_002867225.1|1461193_1462342_-|carboxynorspermidine-decarboxylase	gnl|CDD|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP014344.1|WP_002851546.1|1478378_1478828_-|DNA-starvation/stationary-phase-protection-protein	gnl|CDD|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51
NZ_CP014344.1|WP_002869804.1|1464670_1465087_+|GyrI-like-domain-containing-protein	gnl|CDD|214874	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators.and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.	2.37716e-11
NZ_CP014344.1|WP_002860687.1|1474172_1475162_-|phosphoribosylformylglycinamidine-cyclo-ligase	gnl|CDD|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP014344.1|WP_052949008.1|1467129_1468020_-|type-II-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	6.94076e-121
NZ_CP014344.1|WP_002851264.1|1456567_1457209_-|4Fe-4S-dicluster-domain-containing-protein	gnl|CDD|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NZ_CP014344.1|WP_002855377.1|1476548_1477280_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	gnl|CDD|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	1.57422e-98
NZ_CP014344.1|WP_002851502.1|1460175_1460889_-|hypothetical-protein	gnl|CDD|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.00059716
NZ_CP014344.1|WP_061099861.1|1462465_1464007_+|multicopper-oxidase-CueO	gnl|CDD|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	1.14273e-119
NZ_CP014344.1|WP_002803269.1|1460009_1460201_-|twin-arginine-translocation-signal-domain-containing-protein	gnl|CDD|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00537271
NZ_CP014344.1|WP_038814334.1|1468006_1470970_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl|CDD|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP014344.1|WP_002860683.1|1477276_1478314_-|ATP-binding-protein	gnl|CDD|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	4.14058e-33
NZ_CP014344.1|WP_002780988.1|1466705_1467137_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	6.96465e-59

Protein sequences

>NZ_CP014344.1|WP_052782196.1|1465089_1466280_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENVRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILITTGGVSMGDFDFLKKAVKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>NZ_CP014344.1|WP_002869804.1|1464670_1465087_+|GyrI-like-domain-containing-protein
MIQEIEEFSIYGVSVKTDEELESDLNSSLIFPLWKKFHSIFGAPDEIYSVYYDYKNTHKLEYKICVGMKNPHEKGEKICIKGGKYMLFEDSGKPEIIAPKLWQNINEFFKNSSLQRKFDTDFEFYTTNKTQIYISMKE
>NZ_CP014344.1|WP_002867223.1|1464230_1464674_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAVHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLK
>NZ_CP014344.1|WP_002779488.1|1464008_1464230_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>NZ_CP014344.1|WP_061099861.1|1462465_1464007_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFILINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGEFRLESAYYDRDKMMVEEEPNTLFLASISLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGKSENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP014344.1|WP_002867225.1|1461193_1462342_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAIEGLHFHALCEESADALEAVLKAFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKENEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>NZ_CP014344.1|WP_002851502.1|1460175_1460889_-|hypothetical-protein
MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_CP014344.1|WP_002803269.1|1460009_1460201_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWEKYYIKAE
>NZ_CP014344.1|WP_079757851.1|1457205_1460010_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQKGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGIMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NZ_CP014344.1|WP_002851264.1|1456567_1457209_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NZ_CP014344.1|WP_002780988.1|1466705_1467137_-|CRISPR-associated-endonuclease-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF
>NZ_CP014344.1|WP_052949008.1|1467129_1468020_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIILESLQASLSSALFNAFAKHKIILLTCDETHSINGIFTPFLGHFQSAKIAKEQINVSAQKKAILWQKIIKNKILNQAFVLKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP014344.1|WP_038814334.1|1468006_1470970_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNTLLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGDHSLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNYSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCVYSGEKIKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSTKWQKIEVLAKNLPEKKQKRILDKNYKDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSTKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPELVYFNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKNELR
>NZ_CP014344.1|WP_002860687.1|1474172_1475162_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIGDKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE
>NZ_CP014344.1|WP_052823203.1|1475222_1475828_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFNLKNLLTKEKKIDRKILGEIVFNNKEAKKTLENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKVRLNSQIDIEEKLKKADFIIKNTNSYVDFRQECVKVIQEISKGKM
>NZ_CP014344.1|WP_061099863.1|1475824_1476574_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGGDGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQDKVEVSLGKIKSMQNTFEELGKTWQLCDTGVPHLVHFCQNLDEFDTILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYNFS
>NZ_CP014344.1|WP_002855377.1|1476548_1477280_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase
MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQTNLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVYSYVLNLNRHFAYEKFRDARAKFASEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NZ_CP014344.1|WP_002860683.1|1477276_1478314_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKIKIPIILSTNIKDLNINGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEDFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDSFFEQGVKFEVISFDKFSLGF
>NZ_CP014344.1|WP_002851546.1|1478378_1478828_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM
>NZ_CP014344.1|WP_002860682.1|1478955_1480176_-|glucose-6-phosphate-isomerase
MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNLIDESLAFIKDKEHIKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFNKTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLHQEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKKDEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIALIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELLNAQCNATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPGVEVGKLILKNILNS

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014344_2	2.1|1466432|30|NZ_CP014344|CRISPRCasFinder	1466432-1466461	30	MN530981	Campylobacter phage DA10, complete genome	33579-33608	0	1.0
NZ_CP014344_2	2.1|1466432|30|NZ_CP014344|CRISPRCasFinder	1466432-1466461	30	KF751794	Campylobacter phage CJIE4-2, complete genome	13669-13698	0	1.0
NZ_CP014344_2	2.1|1466432|30|NZ_CP014344|CRISPRCasFinder	1466432-1466461	30	KF751795	Campylobacter phage CJIE4-3, complete genome	11997-12026	0	1.0
NZ_CP014344_2	2.1|1466432|30|NZ_CP014344|CRISPRCasFinder	1466432-1466461	30	KF751796	Campylobacter phage CJIE4-4, complete genome	12035-12064	0	1.0
NZ_CP014344_2	2.2|1466498|30|NZ_CP014344|CRISPRCasFinder	1466498-1466527	30	MN530981	Campylobacter phage DA10, complete genome	3548-3577	0	1.0
NZ_CP014344_2	2.1|1466432|30|NZ_CP014344|CRISPRCasFinder	1466432-1466461	30	KF751797	Campylobacter phage CJIE4-5, complete genome	13919-13948	1	0.967
NZ_CP014344_2	2.1|1466432|30|NZ_CP014344|CRISPRCasFinder	1466432-1466461	30	KF751793	Campylobacter phage CJIE4-1, complete genome	14946-14975	1	0.967
NZ_CP014344_1	1.1|1340091|34|NZ_CP014344|CRISPRCasFinder	1340091-1340124	34	MH752385	Bacillus phage Ray17, complete genome	8509-8542	10	0.706

1. spacer 2.1|1466432|30|NZ_CP014344|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

ccatcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccatcaagtcgtgcaattttaatacactgg	Protospacer
******************************

2. spacer 2.1|1466432|30|NZ_CP014344|CRISPRCasFinder matches to KF751794 (Campylobacter phage CJIE4-2, complete genome) position: , mismatch: 0, identity: 1.0

ccatcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccatcaagtcgtgcaattttaatacactgg	Protospacer
******************************

3. spacer 2.1|1466432|30|NZ_CP014344|CRISPRCasFinder matches to KF751795 (Campylobacter phage CJIE4-3, complete genome) position: , mismatch: 0, identity: 1.0

ccatcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccatcaagtcgtgcaattttaatacactgg	Protospacer
******************************

4. spacer 2.1|1466432|30|NZ_CP014344|CRISPRCasFinder matches to KF751796 (Campylobacter phage CJIE4-4, complete genome) position: , mismatch: 0, identity: 1.0

ccatcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccatcaagtcgtgcaattttaatacactgg	Protospacer
******************************

5. spacer 2.2|1466498|30|NZ_CP014344|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

ttagcaacttataataactctaatgttatt	CRISPR spacer
ttagcaacttataataactctaatgttatt	Protospacer
******************************

6. spacer 2.1|1466432|30|NZ_CP014344|CRISPRCasFinder matches to KF751797 (Campylobacter phage CJIE4-5, complete genome) position: , mismatch: 1, identity: 0.967

ccatcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccttcaagtcgtgcaattttaatacactgg	Protospacer
** ***************************

7. spacer 2.1|1466432|30|NZ_CP014344|CRISPRCasFinder matches to KF751793 (Campylobacter phage CJIE4-1, complete genome) position: , mismatch: 1, identity: 0.967

ccatcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccttcaagtcgtgcaattttaatacactgg	Protospacer
** ***************************

8. spacer 1.1|1340091|34|NZ_CP014344|CRISPRCasFinder matches to MH752385 (Bacillus phage Ray17, complete genome) position: , mismatch: 10, identity: 0.706

ttttttagctttatactcagccttactcatataa	CRISPR spacer
cttacaagctttatactcagccttattgatcgtt	Protospacer
.** . *******************.* **    

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1368783 : 1374719	6	Acanthamoeba_polyphaga_mimivirus(16.67%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP014344|1368783:1374719|DBSCAN-SWA
ATCATATCTGAGAATTATAAAAAAACCTATAATCCTCAGGCACGCCTATATCTATAAAATAATCATCAAAAATATGAGCTTTAGCTTTTAGTTTTTCATAATTTTCTTGCAAAAATTCTTCAAAAGAAAATTTTTCCTGCAAAGCAAAATCTTTAAAAATATCTTTATCTAAAAGATAAATTCCACCATTGATTAAACCCTGATTTTTAAATATTTTTTCCTCAAAAGAAATCACAAAACCTTGCTCATTAACATTTACTGTGCCATATCTATCAAAATCATTCATTTGTTTTAAAGCAAGGCAAATTTTACTTCTATTTAGCTTTAATTTACTTAAATCTATGTCAAAAAAAGTATCGCCATTTAAAACATAAGCCTCGTTTTTTATAAATTTCAAAGCCTCTTTTATAGCTCCACCCGTTCCTAGAGGCTCTTTTTCTATACTGTATTTTATTTTTATGCCTAAAAACTCATCTTTAAAATATTCTTGCATCACTTCATATTTGTATGATACTGCTAAGATAACTTCTTTTATGCCTTGCTTTTTAAGATATTCAAAAATAAATTCTAAAAAAGGCTTATCATTTATCGGTGCCATAGGTTTTGGAATGTCTTTTATAATACTTTTAAGTCTTGTTCCTAAGCCGCCACAAAGTATTATTGCTTGCAAGAAAAACCTTTACCGAAAAGCTCTTCTTCGACAATAGCACAAATAATATGTCCTATTAAAATATGCGCTTCTTGAATTCTTGGCGTGCAAGTTGAAGGCACTTTTATACAATAATCACAAAGTTCATTCATAGCCCCGCCACTAGCTCCACTTAAGCCTATACTTGTGATTCCTTTTTGCCTGCAAAGATCTAGAGCTTTTAAGATATTTTTACTATTTCCACTTGTTGAAATGCCTATAAAAACATCTCCCTTAACACCTTGAGCTTGCACTTGTCTAGCAAACAAATTTTCATAACCATAGTCATTACCAATAGCTGTTAATATGCTAGTATCTGTAGTAAGTGCAATACTTGCGATACCGGGTCTATCAAAATAAAACCTACTTACAAATTCCCCTGCAATATGCTGTGCATCAGCTGCACTACCACCGTTTCCTGCTAGTAAGGTTTTATTGCCATTTCGATAAGCTTTTATGACTTCTAATGAAGCATTTTTAATAAGAGTTATTAAATTCTCATCTTTTAAAATTTGCTCTTTTACCAAAATCGATTCTTGAAAATGTTCTTTTATATAAGAATTTAAATTCTCCATGATTTAACTCCCTCTTTTGTAAATGAAAAATCTTGTACATAACCTTGTTCTTTGTTTAAAGCTTTGATTAAATTATATTTTTTAGTAGGATCTACGAAGAAAAACATAAATCCACCTGCTCCTGCTCCACTGGTTTTGCCACTATAGGCTCCGTTATCTATAGCAAGTTTATAAATTCTTTCAAGCTCATCATTACTAACGATTTCTGAGATGATTTTTTTTGACTGCCAAGACTTACCTAAAATTTGCGCCAAAGTATCAAAATCCGCCTTAAATAAAGCTTCTTTCATCTTTATAGCATCTTGCTTTATAGCATGCATTGCCTCTAAAGACTTTTCATCTCCAAGCTTTCCTTTTTTATGTTCTTCTATATCTTTTGCTTCTCTTGTGATATTTGTAAAATAAAGCACAGTTCTAGCTTCAAGCTCACTAGCTATCCAGTTTTTAATACGCAAAGGATTAACAATGACTCTTTTATTCTCATAAAATTCCATAAAATTAAAGCCACCAAAAGTTGCGGCGTATTGATCTTGTGCTCCACCTACTATGCCTAAATCTTCTCTTTCTATCTCATAAGCAAGTTTAGCGATTTCATATTCCCCTAAAGGTAAATTAAGCCATTCTGAAAAAGCCTTTATAACCCCTACAACTAAGGTTGAGCTTCCACCTAGCCCACTACCACTTGGTACATCTGAGTATGTATGCAAAGAAAAACTCAAAGGTTTTTTTGTAAAATCTTTTACAATACGATTATAAATGCTCTTAAAAATATCTAATTTTCCATCATTTTCTAAATGCTCTTTACTTTCATACTCAGAGTAAGAATTTGTATCAGGAGAATCAAAGATGATTTTTCCATCTTCTCTTTCGATCAAAGTGCAATGTATATATAAAGATATAGTTGCATTTAAAACATAACCTGTATATTTATCACAATATAAATTTATATCAGTTCCACCGCCTGCTAGACCGAGACGAAGAGGAGTTTGTGTGCGTATAGTTTTCATTGAATTACTACTTATTTTGCTATAATTTATTATAAAAATTATAGCAAAATATACTTAACTTCTATATAATATTATTTAAACATTTGCAAAGCGATTAACTTTCATCATTTTAAACGCCCTTAAAAGTTCTTCAATACCATCTTCTAAAGTATTATCTGGTTTCCAACCTGTAGCCTCTAATTTAGCATTTGAAACCAAATAATCTCTTTTATCCGGATCTTCACCTATACTGGCTGAATGGATATAAAAATCAGGAATATACTTTTTAATCGTTTCAGCAAGCTGTCTTTTAGTCAAATTTGCAGAACTTAATCCCATGTTATAAGCCTGACCCTTCATCTTATCATAATTCTCAATTCCATGAATAAATCCTTTAACCACATCGCGAACATGAATATAATTGCGTCTAAAATGCTCTTCAAAAAGCACTATAAATTTATCTTTATATGCACGATAGGTAAAATCATTAACAAGTAAATCAAGTCTCATTCTAGGTGAAATTCCAAAAACAGTAGCCAAACGAAAAGTTACACAATTTCCTTTATCAAGCAAATATTGCTCCGCGTGCACTTTATCGATCCCATATTCTGAGATAGGACGCAAGGGAGATTCTTCAGTGCACATTGCATCTTTTTCTCCTATACCATAACCGCTATTTGTATTGGGATAAATAAATATTTGAGAAGGACTTGCAAAATCACTTATCATTTTTACAGCTTCATAATTGATCATTTTAGCTAATTTTGGATTTCTTTTACAAAGTGGAGCTCCAACCAAAGCAGCTAGGGGAATAATAATATCAGCTTTTGCTACCTCTTGCTTAATGAGATTTTCATCCATAGCGTCACCATTTATAAAAGTAAAATTTTTATTATGAGAACAAGATAAAAGAGAGATTTGATCAAACATCAAATTATCAATCACACAAACTTCATAACCTTTTTCAAGTAAAATCGGTGTTAAAACCGAACCTATATAACCTGCACCACCTGTAATTAAAACTTTTTTTGACATATTTTTCCTTTAAATCGATGGTTTTATCGATTTAAAGGAATTCTGCCTCTCTTAATTTCATTTCTCCAATGATTTAGCAAATCTTTAAGCATTTGTCTAACAGGAATTTCAGCTTTCCAATCGATAAAACTCTTTATTTTACTATTATCAAACATTTGATAGTCAGCATCAATAGGACGCATCCTATCTTCAACTTGTCTTACCTCAATACCCCCCCCCCATATCACTAAAATTTAGCAATATATCTATAACTTCAGGAAGTTTAAAAGCCTCTTCTCCTGCTATATTAAAAGCTTCTCCGCAAGGAATATTACCCTTTTGACTCTCAAGAGAAAGTAGATAATAAGCCCTTATAGCATCACGACAATCTTGAAAGGTTCTTACACTCGAAAGATTTCCAACCTTGATAACAGGCTCTTGATAACCCGCTTCAATTAAAGCAATTTGTTTTGCAACTGTGCTTTCAAAAAACACATCGCTTCTTCTTGGGCCACTATGCGTTCCCATTCTTGTAACAAAAGTGCGAATGTTATAAGCTTCGCCATAAAATCTTCCCAAATAATCAGTGCCAATTTTGCTTATGCTATAAGGACTTGCACCGTGAAAAGCTGTTTCTTCATTAAGTTTAATCCCTACTTTTGCTTTACCATAAACTTCACTTGAAGAGCAGATATGCACTACAGGGTCATATCCATCTTTTGCCTTTAAAATTCTAATGTTTTCCAAAATATTTGCTGTGCCTATGATATTTGTTTGTAATGTTTCTATAGGTATGTCAAAAGAAGTTTTTGGGTAAGACTGTGCGGCCAAATGAAAGATCACATCCGGTCTTTGACTCTCAAAAAGTTTTTGAAGACTAGAGTAATCATTTAAATCTGCATAAAAAATACTGATTCTATCTTTTTTATTGATCCTATCACTTAAATGATAGATATTGTCCATAGGTTCTTGCCAACGCATCATACCTATAACATCATAATCCGTATTTTCTAGCAAAAAATCTGCCATTTGTGAGCCAACTTGCCCTGTAAATCCTGTAATTAACGCTGTTTTTTTCATGATTTTTCCCATTGTCTTATATTTTGCTCTTTTAAATACCATTCATACATCATCTTAATGCCGTCTTCAAGCTTGATTTTTGCCTTCCAGCCTAAATTTTGCAATCTTGAACTATCTAATATTCTATCCATTGTAGAATCTGGCTTTGAATCGTTAAACACAATTCCACCCTTAAATCCAACAATATTTTTAATCAAACAAGCAAGTTCTTTTATGCTTAAAAATTCCCCACTTCCTACATTAAGATGCGGTTCATTAGATGAAACAATATCTTTAAAATCTATATTTTTCATCACATAAATAGAAGCATCGGCTAAATCTTTTGCATGAATAAATTCCCTAATTACACTACCGCCACCCCAAATTTCTACGCTATCTTTACTTACACCAAATTTTTGTAAATATTCCATTGCTTGCTCTAAGGAATTCATTTGCAAATCCTTTAAAACCTCATCAATTTTATTTTCATCTAAAAGTTTTGCTAAATGAAATTTGCGAAGCAAAGCTGGTAAAACTTTTGCTTTTTGCAAATCAAACTCGGTTGTCTCTCCATACAAATTTGCAAGATACAAAGTGATAAAATTTGTTCTATATTGCAAATTATAACTTTCACACATTTTTGTTCCTATAATTTTTGGTAAACCATATGCAACGGCTTTTAAATCTAGCTTTCCATCTAATAAATTCTCTTCTTTAATGGGATTTATAGCTTTTTGAGGGTAAGCCCAAGCAGAGCCATAAAAAATAAGCTTTTTGACATCATTCTGGTAAGATGAATGAATAATATTTGCTTGAAGTACGCTATTTTCATAGATTACATCAGCTGGAGTAAAAAGCCCTAAAGTATCAAGCTTGGCAGCACATAAAAAAACATATTCTGGTTTTTCTTTTGCAAAAAAATCAGCCACAGCTTTTTGATCTACTAAATCTAATTCTTTTCTTGTTTTTACGATAATATTATTAAAACCCTCATCTATGAGTGTATTATAAAGAGTTTTTCCTAAAGTGCCACCATGCCCTGTTATATAAATTTTAGAATCTTTTTGCATCATTTATCCCTACTCATTGCTAAAATATCACGCTCTGAAAGGATAGGAGAATTTGTTGGCCAATCTATGCCTATTCTTTCATCATTCCATGCATAAGTAAATTGATCAGGAGCATCCATATACTCTCCTAAATAAGCACATTTATAATAATAAACTGCAGTTTCACTACTAACATAATGAGCATTTCCAAAACCCGCTGGAACTAAGATAATTTTTTGATTATCTTGATTTATGATGAATCTTTCATGCTTTAAATAAGTTGGGGAATCTTTTCTGCAATCAACCACAACTTGATGCACTTCTCCATAGACACAAGTGGCTAACTTATAAGTTTTTACATCACCATGGATACCGCGGATAACATTATGTTTAGAATGTATGAATTTATCGTGTATAAATTTTAATCCATTTGGCAAGAGTTTATCTACAGCCTCGCTTGTAAAAGCTGTCCAAATTTCACCTCTTAAATCTCTAAATTTGTTAGGAGTTATGATATATACTCCTTTTAAAATTTTTGATTCTTGTATATCAAATTCTATTGCCAT

Protein sequences of DBSCAN-SWA_1

>NZ_CP014344|1368783:1374719|1373121_1374174_-|WP_002895073.1|DBSCAN-SWA
MQKDSKIYITGHGGTLGKTLYNTLIDEGFNNIIVKTRKELDLVDQKAVADFFAKEKPEYVFLCAAKLDTLGLFTPADVIYENSVLQANIIHSSYQNDVKKLIFYGSAWAYPQKAINPIKEENLLDGKLDLKAVAYGLPKIIGTKMCESYNLQYRTNFITLYLANLYGETTEFDLQKAKVLPALLRKFHLAKLLDENKIDEVLKDLQMNSLEQAMEYLQKFGVSKDSVEIWGGGSVIREFIHAKDLADASIYVMKNIDFKDIVSSNEPHLNVGSGEFLSIKELACLIKNIVGFKGGIVFNDSKPDSTMDRILDSSRLQNLGWKAKIKLEDGIKMMYEWYLKEQNIRQWEKS
>NZ_CP014344|1368783:1374719|1371127_1372066_-|WP_002858841.1|DBSCAN-SWA
MSKKVLITGGAGYIGSVLTPILLEKGYEVCVIDNLMFDQISLLSCSHNKNFTFINGDAMDENLIKQEVAKADIIIPLAALVGAPLCKRNPKLAKMINYEAVKMISDFASPSQIFIYPNTNSGYGIGEKDAMCTEESPLRPISEYGIDKVHAEQYLLDKGNCVTFRLATVFGISPRMRLDLLVNDFTYRAYKDKFIVLFEEHFRRNYIHVRDVVKGFIHGIENYDKMKGQAYNMGLSSANLTKRQLAETIKKYIPDFYIHSASIGEDPDKRDYLVSNAKLEATGWKPDNTLEDGIEELLRAFKMMKVNRFANV
>NZ_CP014344|1368783:1374719|1368783_1369452_-|WP_002895301.1|DBSCAN-SWA
MQAIILCGGLGTRLKSIIKDIPKPMAPINDKPFLEFIFEYLKKQGIKEVILAVSYKYEVMQEYFKDEFLGIKIKYSIEKEPLGTGGAIKEALKFIKNEAYVLNGDTFFDIDLSKLKLNRSKICLALKQMNDFDRYGTVNVNEQGFVISFEEKIFKNQGLINGGIYLLDKDIFKDFALQEKFSFEEFLQENYEKLKAKAHIFDDYFIDIGVPEDYRFFYNSQI
>NZ_CP014344|1368783:1374719|1374173_1374719_-|WP_002895072.1|DBSCAN-SWA
MAIEFDIQESKILKGVYIITPNKFRDLRGEIWTAFTSEAVDKLLPNGLKFIHDKFIHSKHNVIRGIHGDVKTYKLATCVYGEVHQVVVDCRKDSPTYLKHERFIINQDNQKIILVPAGFGNAHYVSSETAVYYYKCAYLGEYMDAPDQFTYAWNDERIGIDWPTNSPILSERDILAMSRDK
>NZ_CP014344|1368783:1374719|1370032_1371052_-|WP_002895298.1|DBSCAN-SWA
MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNATISLYIHCTLIEREDGKIIFDSPDTNSYSEYESKEHLENDGKLDIFKSIYNRIVKDFTKKPLSFSLHTYSDVPSGSGLGGSSTLVVGVIKAFSEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQDQYAATFGGFNFMEFYENKRVIVNPLRIKNWIASELEARTVLYFTNITREAKDIEEHKKGKLGDEKSLEAMHAIKQDAIKMKEALFKADFDTLAQILGKSWQSKKIISEIVSNDELERIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKALNKEQGYVQDFSFTKEGVKSWRI
>NZ_CP014344|1368783:1374719|1369439_1370045_-|WP_002895299.1|DBSCAN-SWA
MENLNSYIKEHFQESILVKEQILKDENLITLIKNASLEVIKAYRNGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSILTAIGNDYGYENLFARQVQAQGVKGDVFIGISTSGNSKNILKALDLCRQKGITSIGLSGASGGAMNELCDYCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFSCKQ

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002895301.1|1368783_1369452_-	NTP transferase domain-containing protein	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	7.8e-07	26.6
WP_002895299.1|1369439_1370045_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	4.9e-16	35.0
WP_002895298.1|1370032_1371052_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	2.1e-59	40.2
WP_002858841.1|1371127_1372066_-	NAD-dependent epimerase/dehydratase	A0A0F7LC08	uncultured_marine_virus	7.9e-74	46.3
WP_002895073.1|1373121_1374174_-	NAD-dependent epimerase/dehydratase family protein	M1HKX0	Paramecium_bursaria_Chlorella_virus	9.2e-63	39.4
WP_002895072.1|1374173_1374719_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D7XFA9	Escherichia_phage	2.2e-15	30.4